Query 030739
Match_columns 172
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 05:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vg5_A RSGI RUH-014, rhomboid 97.0 0.00089 3E-08 46.8 4.7 41 119-159 26-66 (73)
2 2g3q_A Protein YBL047C; endocy 96.3 0.002 7E-08 39.4 2.4 36 124-159 6-41 (43)
3 2jy5_A Ubiquilin-1; UBA, alter 96.2 0.0039 1.3E-07 40.3 3.4 42 118-159 8-50 (52)
4 2ooa_A E3 ubiquitin-protein li 96.0 0.0035 1.2E-07 42.6 2.5 40 121-160 10-49 (52)
5 1ify_A HHR23A, UV excision rep 95.9 0.0046 1.6E-07 39.4 2.7 39 121-159 7-45 (49)
6 2dak_A Ubiquitin carboxyl-term 95.8 0.0075 2.6E-07 39.8 3.4 40 121-160 8-47 (63)
7 2knz_A Ubiquilin-4; cytoplasm, 95.6 0.0063 2.1E-07 39.3 2.5 43 119-161 8-51 (53)
8 2ekk_A UBA domain from E3 ubiq 95.5 0.0098 3.4E-07 37.1 2.8 37 122-159 9-45 (47)
9 2cpw_A CBL-interacting protein 95.4 0.019 6.6E-07 38.4 4.3 38 123-160 20-58 (64)
10 1wji_A Tudor domain containing 95.4 0.008 2.7E-07 40.4 2.4 38 123-160 10-47 (63)
11 1veg_A NEDD8 ultimate buster-1 95.1 0.04 1.4E-06 39.5 5.3 39 122-160 29-67 (83)
12 1vej_A Riken cDNA 4931431F19; 95.0 0.042 1.4E-06 38.5 5.2 40 120-159 27-67 (74)
13 2d9s_A CBL E3 ubiquitin protei 94.9 0.017 5.8E-07 39.3 2.8 42 121-162 8-49 (53)
14 1wiv_A UBP14, ubiquitin-specif 94.7 0.018 6.1E-07 39.6 2.6 40 121-160 28-67 (73)
15 1dv0_A DNA repair protein HHR2 94.7 0.0079 2.7E-07 38.3 0.7 36 124-159 6-41 (47)
16 2crn_A Ubash3A protein; compac 94.5 0.026 8.8E-07 38.0 3.0 39 122-160 9-48 (64)
17 2dag_A Ubiquitin carboxyl-term 94.5 0.021 7.3E-07 39.3 2.6 40 121-160 8-48 (74)
18 2juj_A E3 ubiquitin-protein li 94.4 0.035 1.2E-06 38.3 3.4 45 119-163 4-48 (56)
19 1vek_A UBP14, ubiquitin-specif 94.3 0.025 8.7E-07 39.8 2.6 39 122-160 29-68 (84)
20 1whc_A RSGI RUH-027, UBA/UBX 3 94.2 0.035 1.2E-06 37.0 3.1 38 123-160 10-48 (64)
21 1z96_A DNA-damage, UBA-domain 94.2 0.027 9.1E-07 33.1 2.2 36 123-158 5-40 (40)
22 2dkl_A Trinucleotide repeat co 94.0 0.039 1.3E-06 39.2 3.2 38 123-160 22-59 (85)
23 4ae4_A Ubiquitin-associated pr 94.0 0.029 9.8E-07 41.7 2.6 37 124-160 10-46 (118)
24 1wgn_A UBAP1, ubiquitin associ 93.6 0.036 1.2E-06 38.9 2.3 37 124-160 21-57 (63)
25 2dai_A Ubadc1, ubiquitin assoc 93.4 0.045 1.6E-06 38.6 2.6 40 121-160 28-67 (83)
26 2oo9_A E3 ubiquitin-protein li 93.4 0.049 1.7E-06 36.3 2.6 42 120-161 2-43 (46)
27 2lbc_A Ubiquitin carboxyl-term 92.4 0.074 2.5E-06 38.5 2.6 40 121-160 77-116 (126)
28 2dah_A Ubiquilin-3; UBA domain 91.4 0.12 4.1E-06 33.8 2.5 42 121-162 8-50 (54)
29 2bwb_A Ubiquitin-like protein 91.3 0.076 2.6E-06 33.6 1.4 40 120-159 5-45 (46)
30 1wr1_B Ubiquitin-like protein 91.0 0.12 3.9E-06 34.5 2.2 41 119-159 14-55 (58)
31 1oqy_A HHR23A, UV excision rep 87.6 0.73 2.5E-05 39.5 5.1 39 121-159 167-205 (368)
32 2lbc_A Ubiquitin carboxyl-term 86.9 0.26 8.9E-06 35.6 1.7 38 123-160 4-42 (126)
33 4ae4_A Ubiquitin-associated pr 82.1 0.8 2.7E-05 33.8 2.6 38 122-159 76-113 (118)
34 1oqy_A HHR23A, UV excision rep 79.5 0.73 2.5E-05 39.5 1.8 37 124-160 327-363 (368)
35 2cwb_A Chimera of immunoglobul 77.8 1.4 4.8E-05 32.7 2.7 40 121-160 65-105 (108)
36 2qsf_X RAD23, UV excision repa 76.2 1.4 4.8E-05 34.9 2.4 37 124-160 132-168 (171)
37 2dna_A Unnamed protein product 74.6 1.2 4E-05 30.8 1.4 43 119-161 16-59 (67)
38 1wj7_A Hypothetical protein (R 64.9 4 0.00014 30.4 2.6 40 122-161 39-79 (104)
39 3k9o_A Ubiquitin-conjugating e 61.3 4.4 0.00015 31.1 2.3 37 123-159 164-200 (201)
40 1q02_A Sequestosome 1; helical 49.1 4 0.00014 27.6 0.2 18 118-135 6-23 (52)
41 3pzp_A DNA polymerase kappa; D 36.9 67 0.0023 28.1 6.1 57 12-68 7-82 (517)
42 2cp8_A NEXT to BRCA1 gene 1 pr 34.4 38 0.0013 22.5 3.2 41 121-161 8-49 (54)
43 4fp9_B Mterf domain-containing 33.0 14 0.00047 31.0 1.1 43 122-164 46-92 (335)
44 1jfi_B DR1 protein, transcript 32.0 36 0.0012 27.0 3.3 41 54-96 114-157 (179)
45 3bhp_A UPF0291 protein YNZC; N 31.2 24 0.00082 24.1 1.9 20 55-76 21-40 (60)
46 3dob_A Heat shock 70 kDa prote 31.0 24 0.00081 26.2 2.0 21 55-77 118-138 (152)
47 3ota_A Holo-[acyl-carrier-prot 30.5 49 0.0017 24.2 3.6 42 23-76 13-54 (129)
48 2jvd_A UPF0291 protein YNZC; s 30.0 27 0.00091 23.5 1.9 25 55-83 21-45 (54)
49 1l1c_A Transcription antitermi 28.7 7.4 0.00025 25.5 -1.0 22 8-29 24-45 (55)
50 3dqg_A Heat shock 70 kDa prote 27.1 25 0.00086 26.0 1.5 23 53-77 115-137 (151)
51 2ahq_A Sigma-54, RNA polymeras 26.6 93 0.0032 21.4 4.3 15 20-34 13-27 (76)
52 1auu_A SACY; antitermination, 25.7 7.2 0.00025 25.6 -1.5 21 9-29 24-44 (55)
53 3rgc_A Possible periplasmic pr 24.6 51 0.0017 24.8 2.8 12 22-33 11-22 (252)
54 1q7l_B Aminoacylase-1; catalys 23.6 50 0.0017 21.2 2.3 31 5-35 36-71 (88)
55 2hep_A UPF0291 protein YNZC; S 21.9 39 0.0013 24.4 1.7 25 55-83 21-45 (85)
56 3nrk_A LIC12922; NC domain, pa 20.9 64 0.0022 25.6 2.9 16 130-145 192-207 (325)
57 3h0x_A 78 kDa glucose-regulate 20.3 41 0.0014 24.7 1.5 16 54-69 117-132 (152)
No 1
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.00 E-value=0.00089 Score=46.80 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=37.4
Q ss_pred ccccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 119 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 119 ~~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
.......++.|..|||+--+|+.|+...+.|||.-+-||++
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33466789999999999999999999999999999999997
No 2
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.34 E-value=0.002 Score=39.35 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=33.8
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
..++.|.+|||+--+++.|+...+.|++.-+-||++
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 568999999999999999999999999999999986
No 3
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.23 E-value=0.0039 Score=40.28 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHhch-hHHHHHHHhhhhccCccchhhhhhh
Q 030739 118 SDTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 118 ~~~~lsssm~mlLsMGF-sY~qv~EAysIFgddvdsMvcYllE 159 (172)
|.......++.|..||| +--+++.|...-+-||+.-+-||+.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44556778999999999 9999999999999999999999975
No 4
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=96.01 E-value=0.0035 Score=42.57 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=35.2
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
...+.+..|.+|||+.-+|+.|-.|...|||----.|+|-
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4457999999999999999999999999999777788874
No 5
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.93 E-value=0.0046 Score=39.41 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=36.0
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
.....++.|.+|||+--+++.|....+-|||.-+-||++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 345678999999999999999999999999999999997
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0075 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=36.0
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
+-...++.|..|||+--+++.|....+-||+.-+-||++-
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456789999999999999999999999999999999973
No 7
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.65 E-value=0.0063 Score=39.32 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=37.9
Q ss_pred ccccchhhHHHHHhch-hHHHHHHHhhhhccCccchhhhhhhcC
Q 030739 119 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG 161 (172)
Q Consensus 119 ~~~lsssm~mlLsMGF-sY~qv~EAysIFgddvdsMvcYllEtg 161 (172)
.......++.|..||| +--+++.|...-+-||+.-+-||++-+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3445677999999999 999999999999999999999999844
No 8
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.0098 Score=37.07 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=33.6
Q ss_pred cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
-...++.|++|||+--++..|+..-| ||+.-+-||++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 35678999999999999999999998 99999999986
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.42 E-value=0.019 Score=38.44 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=34.7
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 160 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt 160 (172)
...++.|+.|||+--+++.|+..-+. ||+.-+-||++-
T Consensus 20 e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 20 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 45699999999999999999999986 999999999973
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.39 E-value=0.008 Score=40.39 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=35.3
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
...++.|..|||+--+++.|+...+.||+.-+-||++-
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 46789999999999999999999999999999999974
No 11
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.06 E-value=0.04 Score=39.47 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=36.2
Q ss_pred cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
-...++.|+.|||+--+|+.|....+.||+--+-||+.-
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456899999999999999999999999999999999974
No 12
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.02 E-value=0.042 Score=38.53 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=35.4
Q ss_pred cccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739 120 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 120 ~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE 159 (172)
......++.|..|||+ .-+++.|...-+-||+.-|-||+.
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456789999999994 788899999999999999999997
No 13
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.91 E-value=0.017 Score=39.29 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=37.1
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcCC
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS 162 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg~ 162 (172)
..++.+..|.+|||+.-+|+-|-.|...|||--.-.|+|-.+
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 456679999999999999999999999999987778888653
No 14
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.73 E-value=0.018 Score=39.58 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=36.6
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
+-...++.|..|||+--++..|+..-+-||+.-+-||++-
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4566799999999999999999999999999999999973
No 15
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.67 E-value=0.0079 Score=38.29 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=33.2
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
..++.|.+|||+--+|++||.--|-|++.-+-||++
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999999999999999999999999986
No 16
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.53 E-value=0.026 Score=37.98 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=35.1
Q ss_pred cchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 160 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt 160 (172)
....++.|++|||+--++..|...-|. ||+.-+-||++-
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 445789999999999999999999876 999999999985
No 17
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.52 E-value=0.021 Score=39.26 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=35.6
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt 160 (172)
+-...++.|+.|||+--++..|+..-+. ||+.-+-||++-
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999985 899999999984
No 18
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=94.39 E-value=0.035 Score=38.33 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=39.0
Q ss_pred ccccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcCCc
Q 030739 119 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 163 (172)
Q Consensus 119 ~~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg~s 163 (172)
+..+.+.+..|.+||||.-.|+.|-.|=..||+----.|+|-.+-
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHcc
Confidence 445677999999999999999999999999999777788997653
No 19
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.26 E-value=0.025 Score=39.79 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=34.4
Q ss_pred cchhhHHHHHhchhHHHHHHHhhhhc-cCccchhhhhhhc
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET 160 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAysIFg-ddvdsMvcYllEt 160 (172)
-...++.|++|||+--+++.|...-+ -||+.-+-||++-
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45678999999999999999988776 5999999999984
No 20
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.22 E-value=0.035 Score=37.04 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=34.4
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhc-cCccchhhhhhhc
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET 160 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFg-ddvdsMvcYllEt 160 (172)
...++.|++|||+--++..|+..-| .||+.-+-||++-
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4578999999999999999999995 8999999999984
No 21
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.19 E-value=0.027 Score=33.07 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=31.7
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhh
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL 158 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYll 158 (172)
...++.|.+|||+--+++.|+...+-||+.-+-||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 346899999999999999999999999998887774
No 22
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.03 E-value=0.039 Score=39.18 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=35.4
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
...++.|+.|||+--+++.|+...+-|++.-+-||++-
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 66789999999999999999999999999999999985
No 23
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.00 E-value=0.029 Score=41.68 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=33.5
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
.-++.|++|||+.-++.=|.--.|.|++..+-||++-
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3478999999999999999999999999999999874
No 24
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.61 E-value=0.036 Score=38.93 Aligned_cols=37 Identities=27% Similarity=0.595 Sum_probs=33.7
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
..+.+|.+|||++=|++=|---=|.||+.-+-||.--
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4589999999999999999999999999999998754
No 25
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.41 E-value=0.045 Score=38.58 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=35.9
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
+-...++.|+.|||+--++..|+..-+.||+.-+-||++-
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3456789999999999999999999999999999999984
No 26
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=93.41 E-value=0.049 Score=36.30 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=35.9
Q ss_pred cccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcC
Q 030739 120 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG 161 (172)
Q Consensus 120 ~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg 161 (172)
..|++.+.+|.||||++=.|+-|-.|=..||+-----|+|-.
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 468899999999999999999999999999986555666654
No 27
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.43 E-value=0.074 Score=38.49 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=36.2
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
+....++.|.+|||+--++..|+...+.|++.-+-||+..
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4556799999999999999999999999999999999873
No 28
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.40 E-value=0.12 Score=33.77 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=35.8
Q ss_pred ccchhhHHHHHhchhHHH-HHHHhhhhccCccchhhhhhhcCC
Q 030739 121 VLSNSMQMVLSMGFSYLQ-VIEAYSIFGDDVDSMVCYLLETGS 162 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~q-v~EAysIFgddvdsMvcYllEtg~ 162 (172)
...+.++.|..|||+--+ ++.|...-+-||+.-|-||+.-+.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 345689999999996655 699999999999999999998653
No 29
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.30 E-value=0.076 Score=33.63 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=34.2
Q ss_pred cccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739 120 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 120 ~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE 159 (172)
....+.++.|..|||+ --+++.|...-+-||+.-|-||+.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3456789999999996 566899999999999999999974
No 30
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.05 E-value=0.12 Score=34.50 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739 119 DTVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 119 ~~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE 159 (172)
.....+.++.|..|||+ --+++.|...-+-||+.-|-||+.
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34567789999999996 667799999999999999999986
No 31
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=87.56 E-value=0.73 Score=39.47 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
.....++.|++|||+.-+|.-|-..-+.|+|.-|-||+.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 455679999999999999999999888899999999974
No 32
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=86.88 E-value=0.26 Score=35.58 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 160 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt 160 (172)
...++.|++|||+--++-+|.-.-|. ||+.-+.||++-
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 35678999999999999999999976 999999999884
No 33
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=82.09 E-value=0.8 Score=33.84 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
-...+.+|..|||+-=++-+|--..+.|+|.-+=||+=
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999873
No 34
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=79.51 E-value=0.73 Score=39.46 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=34.3
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
..++.|.+|||+--+|++||-..+.|++--+-||++-
T Consensus 327 eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 327 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 4789999999999999999999999999999999873
No 35
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=77.83 E-value=1.4 Score=32.68 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=35.3
Q ss_pred ccchhhHHHHHhchhH-HHHHHHhhhhccCccchhhhhhhc
Q 030739 121 VLSNSMQMVLSMGFSY-LQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 121 ~lsssm~mlLsMGFsY-~qv~EAysIFgddvdsMvcYllEt 160 (172)
...+.++.|..|||+- -+++.|...-+-||+.-|-||+.-
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4567899999999954 699999999999999999999974
No 36
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=76.16 E-value=1.4 Score=34.92 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=34.3
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 160 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt 160 (172)
..++-|..|||+.-+||+||---+.|++--.-||++-
T Consensus 132 eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 132 QAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3689999999999999999999999999999999973
No 37
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.64 E-value=1.2 Score=30.85 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHhchhHHHH-HHHhhhhccCccchhhhhhhcC
Q 030739 119 DTVLSNSMQMVLSMGFSYLQV-IEAYSIFGDDVDSMVCYLLETG 161 (172)
Q Consensus 119 ~~~lsssm~mlLsMGFsY~qv-~EAysIFgddvdsMvcYllEtg 161 (172)
.......++.|.+|||.--+. +.|--.-+-||+.-|-||+.-.
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 345677899999999965544 8999888999999999999853
No 38
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.92 E-value=4 Score=30.45 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=36.6
Q ss_pred cchhhHHHHHh-chhHHHHHHHhhhhccCccchhhhhhhcC
Q 030739 122 LSNSMQMVLSM-GFSYLQVIEAYSIFGDDVDSMVCYLLETG 161 (172)
Q Consensus 122 lsssm~mlLsM-GFsY~qv~EAysIFgddvdsMvcYllEtg 161 (172)
.-..++.|.-| ||+--+|++|.+-.+-|++.-+-||+|-.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 45678999999 99999999999999999999999999853
No 39
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=61.32 E-value=4.4 Score=31.10 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=34.6
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
..-++-|..|||+=-+|++|.+-.+-|++.-+-||++
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5689999999999999999999999999999999985
No 40
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=49.13 E-value=4 Score=27.62 Aligned_cols=18 Identities=50% Similarity=0.724 Sum_probs=14.7
Q ss_pred CccccchhhHHHHHhchh
Q 030739 118 SDTVLSNSMQMVLSMGFS 135 (172)
Q Consensus 118 ~~~~lsssm~mlLsMGFs 135 (172)
+|.-+-.++..+++|||+
T Consensus 6 ~D~rl~~al~qMl~MGF~ 23 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFS 23 (52)
T ss_dssp SCHHHHHHHHHHHTTTCC
T ss_pred cChHHHHHHHHHHHcCCC
Confidence 345577889999999997
No 41
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=36.88 E-value=67 Score=28.08 Aligned_cols=57 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred ccccCCccCC--ccCHHHHHHHHHH----------------hHHHHHHHHHHhcccc-ccchHhhHHHHHHHHHHH
Q 030739 12 DISFTFSVQT--NVDKDQVKAAIKA----------------QQDQQIDNALLAEGRF-YSDLELTEKEIECMVMEV 68 (172)
Q Consensus 12 GLGF~~~~~~--~vDk~qvkaAIKa----------------qqdqqi~~aLlaEgrf-ySDlelTE~EIE~~Vmea 68 (172)
-+||.+.--| .|||+.|++-|.. +-.|.|++-+-.-..+ -.||...+.+++++|++-
T Consensus 7 ~~~~~~~kag~~~~d~~~i~~ii~~~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (517)
T 3pzp_A 7 HMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMEL 82 (517)
T ss_dssp -------CCSCCSCCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 3567777777 5999999998842 1134465543333333 346777778888888764
No 42
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.37 E-value=38 Score=22.51 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=35.1
Q ss_pred ccchhhHHHHHhch-hHHHHHHHhhhhccCccchhhhhhhcC
Q 030739 121 VLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG 161 (172)
Q Consensus 121 ~lsssm~mlLsMGF-sY~qv~EAysIFgddvdsMvcYllEtg 161 (172)
.-.+-|+.|..||| .-=.-++|-.=-+.||+.-|-.||..+
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 34567899999999 777788888889999999999999765
No 43
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=33.02 E-value=14 Score=31.00 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=35.8
Q ss_pred cchhhHHHHHhchhHHHHHHHh----hhhccCccchhhhhhhcCCcc
Q 030739 122 LSNSMQMVLSMGFSYLQVIEAY----SIFGDDVDSMVCYLLETGSSS 164 (172)
Q Consensus 122 lsssm~mlLsMGFsY~qv~EAy----sIFgddvdsMvcYllEtg~s~ 164 (172)
+-..++-|+.|||+--|+-++. +|+..++.++|-||+..|-+.
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~ 92 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCH
Confidence 5567888999999999999875 467888899999999888543
No 44
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=31.97 E-value=36 Score=27.04 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=21.6
Q ss_pred hHhhHHHHHHH---HHHHHHHhhhhcCchhhhcccccCCCCCCCCC
Q 030739 54 LELTEKEIECM---VMEVSRAEYLAGDNLKQQLGHKESSTSGAEPS 96 (172)
Q Consensus 54 lelTE~EIE~~---VmeaSRAEYla~~~fk~ql~~~essts~aepS 96 (172)
..+||.|+.++ ..+.+|+++...+ .++...--+....+.|+
T Consensus 114 sg~~~Eel~~~Qqelf~~Ar~~~~~~~--~~~~~~~~~~~~~~~~~ 157 (179)
T 1jfi_B 114 LGIPEEELLRQQQELFAKARQQQAELA--QQEWLQMQQAAQQAQLA 157 (179)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHH--HHHTTC-----------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhcccc
Confidence 34788888765 6788999999885 34544333333333333
No 45
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=31.22 E-value=24 Score=24.12 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=15.9
Q ss_pred HhhHHHHHHHHHHHHHHhhhhc
Q 030739 55 ELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 55 elTE~EIE~~VmeaSRAEYla~ 76 (172)
.||+.|.++. +.-|.|||+.
T Consensus 21 gLT~eEk~EQ--~~LR~eYl~~ 40 (60)
T 3bhp_A 21 VITEEEKAEQ--QKLRQEYLKG 40 (60)
T ss_dssp CCCHHHHHHH--HHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHHHHH
Confidence 4788888776 5679999986
No 46
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=31.04 E-value=24 Score=26.16 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHhhhhcC
Q 030739 55 ELTEKEIECMVMEVSRAEYLAGD 77 (172)
Q Consensus 55 elTE~EIE~~VmeaSRAEYla~~ 77 (172)
+|++.||++|+-+|. +|-+++
T Consensus 118 ~Ls~~ei~~~~~~a~--~~~~~D 138 (152)
T 3dob_A 118 RLTQSDIDRMVHEAK--QFEKED 138 (152)
T ss_dssp --CHHHHHHHHHHHH--HTHHHH
T ss_pred CCCHHHHHHHHHHHH--HHHHhh
Confidence 599999999999885 344443
No 47
>3ota_A Holo-[acyl-carrier-protein] synthase; structural genomics, center for structural genomics of infec diseases, csgid; HET: COA; 1.85A {Vibrio cholerae o1 biovar el tor} PDB: 3qmn_A*
Probab=30.50 E-value=49 Score=24.24 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHHhhhhc
Q 030739 23 VDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 23 vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRAEYla~ 76 (172)
|+-+-|++++...-+.-+++ =+|+.||+..--...+++|||.
T Consensus 13 v~i~Ri~~~l~r~g~~F~~R------------ift~~E~~~~~~~~~~~~~lA~ 54 (129)
T 3ota_A 13 AEIERVEKALARSGENFARR------------ILTDSELEQFHASKQQGRFLAK 54 (129)
T ss_dssp EEHHHHHHHHHHHHHHHHHH------------HSCHHHHHHHHHCSCHHHHHHH
T ss_pred eEHHHHHHHHHhhCHHHHHH------------CCCHHHHHHHHhccchHHHHHH
Confidence 78888999988766555555 2688898876555567888875
No 48
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=30.05 E-value=27 Score=23.54 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHHHHHhhhhcCchhhhc
Q 030739 55 ELTEKEIECMVMEVSRAEYLAGDNLKQQL 83 (172)
Q Consensus 55 elTE~EIE~~VmeaSRAEYla~~~fk~ql 83 (172)
.||+.|.++. +.-|.|||+. ||.++
T Consensus 21 gLT~eEk~EQ--~~LR~eYl~~--fR~~~ 45 (54)
T 2jvd_A 21 VITEEEKAEQ--QKLRQEYLKG--FRSSM 45 (54)
T ss_dssp CCCHHHHHHH--HHHHHHHHTT--CCCTT
T ss_pred CCCHHHHHHH--HHHHHHHHHH--HHHHH
Confidence 5788888776 5679999986 55554
No 49
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=28.68 E-value=7.4 Score=25.54 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.0
Q ss_pred ccccccccCCccCCccCHHHHH
Q 030739 8 DLLADISFTFSVQTNVDKDQVK 29 (172)
Q Consensus 8 svGaGLGF~~~~~~~vDk~qvk 29 (172)
-+|-|+||.--.|..+|.+.++
T Consensus 24 v~GkGIGF~kk~Gd~id~~~ie 45 (55)
T 1l1c_A 24 VMGRGLAFQKKSGDDVDEARIE 45 (55)
T ss_dssp EECSSSSTTCCTTSCCCGGGCS
T ss_pred EEeccceeCCcCCCccChHHcc
Confidence 3689999999888899987654
No 50
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=27.07 E-value=25 Score=26.00 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=17.3
Q ss_pred chHhhHHHHHHHHHHHHHHhhhhcC
Q 030739 53 DLELTEKEIECMVMEVSRAEYLAGD 77 (172)
Q Consensus 53 DlelTE~EIE~~VmeaSRAEYla~~ 77 (172)
+-.|++.||++|+-+|- +|-+++
T Consensus 115 ~~~Ls~~ei~~~~~~a~--~~~~~D 137 (151)
T 3dqg_A 115 SGGLSKDQIENMIKEAE--KNAAED 137 (151)
T ss_dssp SSSSCHHHHHHHHHHHH--HHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--HHHHHh
Confidence 46799999999999874 344443
No 51
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=26.59 E-value=93 Score=21.43 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=11.9
Q ss_pred CCccCHHHHHHHHHH
Q 030739 20 QTNVDKDQVKAAIKA 34 (172)
Q Consensus 20 ~~~vDk~qvkaAIKa 34 (172)
|+.+..+.||+.||.
T Consensus 13 g~~~S~~~Ik~~Ik~ 27 (76)
T 2ahq_A 13 AEGLTQGELMKLIKE 27 (76)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHH
Confidence 556788889988886
No 52
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=25.71 E-value=7.2 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.4
Q ss_pred cccccccCCccCCccCHHHHH
Q 030739 9 LLADISFTFSVQTNVDKDQVK 29 (172)
Q Consensus 9 vGaGLGF~~~~~~~vDk~qvk 29 (172)
+|-|+||.--.|..+|.+.++
T Consensus 24 ~GkGIGF~kk~Gd~id~~~ie 44 (55)
T 1auu_A 24 LGAGIAFNKKKNDIVDPSKIE 44 (55)
T ss_dssp ECTTSSTTCCTTSCCCTTTCC
T ss_pred EeccceeCCcCCCccChHHcc
Confidence 689999999888888887553
No 53
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=24.59 E-value=51 Score=24.84 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=5.4
Q ss_pred ccCHHHHHHHHH
Q 030739 22 NVDKDQVKAAIK 33 (172)
Q Consensus 22 ~vDk~qvkaAIK 33 (172)
.+..+++..+++
T Consensus 11 ~It~~el~~~~~ 22 (252)
T 3rgc_A 11 PITTYDIDQTMK 22 (252)
T ss_dssp EEEHHHHHHHHH
T ss_pred eecHHHHHHHHH
Confidence 344444444444
No 54
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=23.57 E-value=50 Score=21.21 Aligned_cols=31 Identities=3% Similarity=-0.105 Sum_probs=24.9
Q ss_pred cccccccccccC---CccCC--ccCHHHHHHHHHHh
Q 030739 5 SIYDLLADISFT---FSVQT--NVDKDQVKAAIKAQ 35 (172)
Q Consensus 5 s~psvGaGLGF~---~~~~~--~vDk~qvkaAIKaq 35 (172)
.+|.|+.|.|+. ..|+. .++.+++.++++--
T Consensus 36 gip~v~fGPg~~~~~~~H~~dE~v~i~~l~~~~~iy 71 (88)
T 1q7l_B 36 GVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIY 71 (88)
T ss_dssp TCCEEEECCCCSCCCCTTSTTCEEEHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCcccccCCCCeeEHHHHHHHHHHH
Confidence 578999999884 36777 69999999998754
No 55
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=21.89 E-value=39 Score=24.43 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHhhhhcCchhhhc
Q 030739 55 ELTEKEIECMVMEVSRAEYLAGDNLKQQL 83 (172)
Q Consensus 55 elTE~EIE~~VmeaSRAEYla~~~fk~ql 83 (172)
.||+.|.++. +.-|.|||+. ||.++
T Consensus 21 GLT~eEk~EQ--~~LR~eYl~~--fR~~~ 45 (85)
T 2hep_A 21 VITEEEKAEQ--QKLRQEYLKG--FRSSM 45 (85)
T ss_dssp CCCHHHHHHH--HHHHHHHHHH--CC---
T ss_pred CCCHHHHHHH--HHHHHHHHHH--HHHHH
Confidence 4788888776 5679999986 44443
No 56
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=20.87 E-value=64 Score=25.61 Aligned_cols=16 Identities=13% Similarity=-0.025 Sum_probs=10.8
Q ss_pred HHhchhHHHHHHHhhh
Q 030739 130 LSMGFSYLQVIEAYSI 145 (172)
Q Consensus 130 LsMGFsY~qv~EAysI 145 (172)
|.-|=++-.+...||.
T Consensus 192 l~~g~~F~~lA~~~S~ 207 (325)
T 3nrk_A 192 LADPSSFALIAGSPRN 207 (325)
T ss_dssp HHCTTHHHHHHHSTTS
T ss_pred HhCCCCHHHHHHHhCC
Confidence 5567677777777763
No 57
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=20.27 E-value=41 Score=24.71 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.8
Q ss_pred hHhhHHHHHHHHHHHH
Q 030739 54 LELTEKEIECMVMEVS 69 (172)
Q Consensus 54 lelTE~EIE~~VmeaS 69 (172)
-.|++.||++|+-+|-
T Consensus 117 ~~ls~~ei~~~~~~a~ 132 (152)
T 3h0x_A 117 GRLTQEEIDRMVEEAE 132 (152)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4689999999999874
Done!