BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030741
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
 pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
          Length = 474

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 99  EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW 143
           E +R  +E   V+LDVRP   F + H  G++N+   +    W  W
Sbjct: 278 ERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGW 321


>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
           3-Mercaptopyruvate Sulfotransferases: Crystal Structure
           Of Ssea From Escherichia Coli
 pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
           3-Mercaptopyruvate Sulfotransferases: Crystal Structure
           Of Ssea From Escherichia Coli
          Length = 280

 Score = 30.4 bits (67), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKE 139
           V+  + L    EN   I+D RP A F           +  H PGA+NV    L++E
Sbjct: 154 VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE 209


>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
           BINDING Protein From Clostridium Difficile 630
 pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
           BINDING Protein From Clostridium Difficile 630
          Length = 134

 Score = 30.0 bits (66), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYR 135
           ++ ++AL+L K    + +DVR E E++E H   AIN  +++
Sbjct: 7   IKIEKALKLDK---VIFVDVRTEGEYEEDHILNAINXPLFK 44


>pdb|2K0Z|A Chain A, Solution Nmr Structure Of Protein Hp1203 From Helicobacter
           Pylori 26695. Northeast Structural Genomics Consortium
           (Nesg) Target Pt1ONTARIO CENTER FOR STRUCTURAL
           PROTEOMICS TARGET HP1203
          Length = 110

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 107 NNFVILDVRPEAEFKEAHPPGAINVQI 133
           N+F+++DVR   E++E H P A  + +
Sbjct: 15  NDFIVVDVRELDEYEELHLPNATLISV 41


>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
           Arabidosis Thaliana
          Length = 129

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 112 LDVRPEAEFKEAHPPGAINV 131
           LDVR   EF + H  GAINV
Sbjct: 36  LDVRTPEEFSQGHACGAINV 55


>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
           From Saccharomyces Cerevisiae
          Length = 139

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 94  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 131
           S E  + +  + + N V++DVR  +E+   H P +INV
Sbjct: 26  SFEDXKRIVGKHDPNVVLVDVREPSEYSIVHIPASINV 63


>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
           Phosphatase Mu Ectodomain
          Length = 731

 Score = 26.2 bits (56), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 66  NAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQ---KENNFVILDVRPEAEFKE 122
           N  TKP   P    W      +L       E + A  L    KEN+   +D       K 
Sbjct: 32  NTLTKPTSDP----WMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKS 87

Query: 123 AHPPGAINVQI 133
             PPG +NV +
Sbjct: 88  NSPPGLLNVYV 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,802,805
Number of Sequences: 62578
Number of extensions: 111145
Number of successful extensions: 209
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 12
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)