Query 030741
Match_columns 172
No_of_seqs 208 out of 1189
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2897 SseA Rhodanese-related 99.5 1.6E-15 3.4E-20 129.7 2.4 111 22-138 89-211 (285)
2 PLN02723 3-mercaptopyruvate su 99.3 2.3E-13 5E-18 117.6 0.9 112 22-137 102-245 (320)
3 PRK09629 bifunctional thiosulf 99.3 6E-13 1.3E-17 124.0 1.1 110 22-136 80-198 (610)
4 PRK11493 sseA 3-mercaptopyruva 99.2 3.9E-12 8.5E-17 107.7 0.3 107 23-138 87-209 (281)
5 KOG1530 Rhodanese-related sulf 99.1 1.4E-10 3.1E-15 88.8 4.7 63 90-171 20-82 (136)
6 KOG1529 Mercaptopyruvate sulfu 99.0 2.7E-10 5.8E-15 97.1 3.5 104 24-138 87-213 (286)
7 cd01518 RHOD_YceA Member of th 99.0 4.1E-10 8.9E-15 80.9 3.8 45 93-137 2-46 (101)
8 cd01534 4RHOD_Repeat_3 Member 99.0 9.5E-10 2E-14 78.3 4.9 44 95-138 1-46 (95)
9 cd01533 4RHOD_Repeat_2 Member 98.9 1.4E-09 3E-14 79.3 5.2 49 91-139 8-57 (109)
10 PRK00162 glpE thiosulfate sulf 98.9 9.1E-10 2E-14 80.1 3.4 51 91-141 3-53 (108)
11 cd01523 RHOD_Lact_B Member of 98.9 1.5E-09 3.4E-14 77.6 3.7 44 95-138 1-45 (100)
12 cd01443 Cdc25_Acr2p Cdc25 enzy 98.8 3.8E-09 8.2E-14 77.6 4.7 46 93-139 2-53 (113)
13 cd01525 RHOD_Kc Member of the 98.8 3.9E-09 8.5E-14 75.8 4.4 43 95-137 1-45 (105)
14 cd01520 RHOD_YbbB Member of th 98.8 3.6E-09 7.7E-14 79.7 4.1 42 95-137 1-42 (128)
15 cd01526 RHOD_ThiF Member of th 98.8 5.4E-09 1.2E-13 77.9 4.9 48 92-139 7-55 (122)
16 cd01527 RHOD_YgaP Member of th 98.8 5E-09 1.1E-13 74.7 4.3 45 93-138 2-46 (99)
17 cd01530 Cdc25 Cdc25 phosphatas 98.8 7.8E-09 1.7E-13 77.5 5.2 48 93-140 2-56 (121)
18 cd01531 Acr2p Eukaryotic arsen 98.8 1.1E-08 2.5E-13 74.9 5.5 49 93-142 2-52 (113)
19 cd01519 RHOD_HSP67B2 Member of 98.8 9E-09 2E-13 73.9 4.7 43 96-138 2-45 (106)
20 PF00581 Rhodanese: Rhodanese- 98.8 8.3E-09 1.8E-13 73.8 4.2 41 96-136 1-41 (113)
21 cd01524 RHOD_Pyr_redox Member 98.7 1.4E-08 3E-13 71.5 4.9 44 95-139 1-44 (90)
22 cd01528 RHOD_2 Member of the R 98.7 1.6E-08 3.4E-13 72.6 4.9 45 95-139 2-48 (101)
23 cd01447 Polysulfide_ST Polysul 98.7 2.2E-08 4.7E-13 71.3 4.5 43 95-137 1-44 (103)
24 cd01522 RHOD_1 Member of the R 98.7 1.7E-08 3.7E-13 74.9 3.9 43 95-137 1-45 (117)
25 cd01444 GlpE_ST GlpE sulfurtra 98.7 3.4E-08 7.3E-13 69.5 5.0 45 95-139 2-49 (96)
26 cd01521 RHOD_PspE2 Member of t 98.6 3.9E-08 8.4E-13 71.9 4.5 45 93-137 8-54 (110)
27 cd01448 TST_Repeat_1 Thiosulfa 98.6 5.7E-08 1.2E-12 71.7 4.4 44 95-138 2-52 (122)
28 cd01449 TST_Repeat_2 Thiosulfa 98.6 4.9E-08 1.1E-12 71.4 3.7 43 95-137 1-54 (118)
29 cd01446 DSP_MapKP N-terminal r 98.5 1.6E-07 3.4E-12 70.7 4.8 43 95-137 2-46 (132)
30 cd01532 4RHOD_Repeat_1 Member 98.4 1.8E-07 3.8E-12 66.4 3.5 35 103-137 5-39 (92)
31 PRK07411 hypothetical protein; 98.4 3E-07 6.4E-12 81.8 5.5 49 90-138 279-329 (390)
32 PRK01415 hypothetical protein; 98.4 2.2E-07 4.9E-12 78.3 4.1 45 93-137 112-156 (247)
33 cd00158 RHOD Rhodanese Homolog 98.4 2.7E-07 5.9E-12 63.1 3.6 39 101-139 3-41 (89)
34 cd01529 4RHOD_Repeats Member o 98.4 2.7E-07 5.9E-12 65.5 3.7 32 106-137 10-41 (96)
35 PRK00142 putative rhodanese-re 98.4 5E-07 1.1E-11 78.4 5.1 46 92-137 111-156 (314)
36 PLN02160 thiosulfate sulfurtra 98.4 3.6E-07 7.8E-12 70.0 3.5 42 91-133 13-56 (136)
37 PRK05320 rhodanese superfamily 98.3 5.5E-07 1.2E-11 76.1 4.8 46 92-137 109-160 (257)
38 smart00450 RHOD Rhodanese Homo 98.3 4.2E-07 9E-12 62.8 2.9 34 106-139 2-35 (100)
39 PRK08762 molybdopterin biosynt 98.3 1E-06 2.2E-11 77.8 5.0 46 92-138 2-47 (376)
40 TIGR02981 phageshock_pspE phag 98.3 8.5E-07 1.8E-11 64.9 3.6 35 107-141 17-51 (101)
41 PRK11493 sseA 3-mercaptopyruva 98.2 1.3E-06 2.7E-11 74.1 4.5 44 94-137 6-59 (281)
42 PRK11784 tRNA 2-selenouridine 98.2 1.3E-06 2.9E-11 76.7 4.3 42 96-138 4-45 (345)
43 cd01445 TST_Repeats Thiosulfat 98.2 1.8E-06 3.9E-11 66.3 4.5 43 95-137 1-67 (138)
44 PRK10287 thiosulfate:cyanide s 98.2 1.4E-06 3.1E-11 64.1 3.7 35 106-140 18-52 (104)
45 PRK05600 thiamine biosynthesis 98.2 1.8E-06 3.9E-11 76.4 4.4 45 94-138 272-319 (370)
46 TIGR03865 PQQ_CXXCW PQQ-depend 98.2 2E-06 4.4E-11 67.8 4.2 43 91-133 34-89 (162)
47 cd01535 4RHOD_Repeat_4 Member 98.1 2.1E-06 4.6E-11 66.4 3.7 41 101-141 3-44 (145)
48 PRK07878 molybdopterin biosynt 98.1 3.5E-06 7.6E-11 74.9 5.0 48 91-138 285-333 (392)
49 TIGR03167 tRNA_sel_U_synt tRNA 98.1 1.9E-06 4.1E-11 74.8 3.1 31 108-138 2-32 (311)
50 PRK09629 bifunctional thiosulf 98.1 3.1E-06 6.7E-11 79.4 4.6 42 94-135 10-51 (610)
51 COG0607 PspE Rhodanese-related 98.0 6.8E-06 1.5E-10 58.7 4.1 39 101-139 13-52 (110)
52 PRK05597 molybdopterin biosynt 97.9 1E-05 2.3E-10 71.1 4.3 47 92-140 260-306 (355)
53 PLN02723 3-mercaptopyruvate su 97.9 1.4E-05 3E-10 69.2 4.7 46 93-138 22-76 (320)
54 KOG3772 M-phase inducer phosph 97.8 1.9E-05 4.1E-10 68.8 4.1 50 90-139 153-208 (325)
55 KOG2017 Molybdopterin synthase 97.8 1.2E-05 2.6E-10 70.9 2.8 48 93-140 317-365 (427)
56 PRK01269 tRNA s(4)U8 sulfurtra 97.4 7.6E-05 1.7E-09 68.1 2.5 35 107-141 406-444 (482)
57 COG1054 Predicted sulfurtransf 96.6 0.0015 3.3E-08 56.5 3.0 46 93-138 113-158 (308)
58 cd01445 TST_Repeats Thiosulfat 96.6 0.00024 5.1E-09 54.5 -2.0 39 23-65 95-136 (138)
59 COG2897 SseA Rhodanese-related 96.5 0.0045 9.8E-08 53.3 5.4 49 93-141 11-66 (285)
60 TIGR03167 tRNA_sel_U_synt tRNA 95.9 0.0013 2.9E-08 57.1 -1.1 92 26-126 77-172 (311)
61 COG5105 MIH1 Mitotic inducer, 94.3 0.028 6E-07 49.6 2.2 44 92-135 241-290 (427)
62 COG2603 Predicted ATPase [Gene 93.8 0.054 1.2E-06 47.2 3.0 42 107-148 14-55 (334)
63 PRK00142 putative rhodanese-re 90.6 0.076 1.7E-06 46.2 0.0 42 95-137 16-57 (314)
64 PRK11784 tRNA 2-selenouridine 89.6 0.036 7.8E-07 48.9 -2.8 90 23-121 88-178 (345)
65 TIGR03865 PQQ_CXXCW PQQ-depend 89.2 0.056 1.2E-06 42.5 -1.7 47 21-71 114-161 (162)
66 cd01449 TST_Repeat_2 Thiosulfa 88.8 0.047 1E-06 39.4 -2.3 39 23-65 78-116 (118)
67 smart00450 RHOD Rhodanese Homo 88.0 0.073 1.6E-06 36.1 -1.7 44 21-68 54-97 (100)
68 cd01525 RHOD_Kc Member of the 85.5 0.12 2.6E-06 36.5 -1.7 39 23-65 65-103 (105)
69 cd01448 TST_Repeat_1 Thiosulfa 83.9 0.16 3.5E-06 36.9 -1.6 41 22-66 78-119 (122)
70 PRK08762 molybdopterin biosynt 83.2 0.94 2E-05 40.0 2.6 45 22-70 56-100 (376)
71 cd01519 RHOD_HSP67B2 Member of 80.7 0.22 4.7E-06 35.1 -2.0 40 22-65 65-104 (106)
72 cd01447 Polysulfide_ST Polysul 80.2 0.19 4.1E-06 35.1 -2.4 40 22-65 60-99 (103)
73 cd01520 RHOD_YbbB Member of th 79.6 0.26 5.7E-06 36.7 -1.9 39 22-65 85-124 (128)
74 cd00158 RHOD Rhodanese Homolog 79.3 0.38 8.2E-06 32.1 -1.0 42 20-65 47-88 (89)
75 cd01529 4RHOD_Repeats Member o 79.2 0.3 6.5E-06 34.1 -1.6 40 22-65 55-94 (96)
76 KOG1093 Predicted protein kina 78.7 0.57 1.2E-05 44.3 -0.3 47 89-138 618-664 (725)
77 cd01444 GlpE_ST GlpE sulfurtra 78.6 0.39 8.4E-06 33.1 -1.2 40 22-65 55-94 (96)
78 KOG1529 Mercaptopyruvate sulfu 78.2 2.6 5.5E-05 36.6 3.5 44 94-137 6-58 (286)
79 cd01532 4RHOD_Repeat_1 Member 77.7 0.37 8.1E-06 33.6 -1.5 40 22-65 49-90 (92)
80 cd01535 4RHOD_Repeat_4 Member 71.4 0.66 1.4E-05 35.7 -1.6 45 23-71 49-93 (145)
81 cd01524 RHOD_Pyr_redox Member 71.0 0.66 1.4E-05 32.0 -1.6 38 23-65 51-88 (90)
82 cd01533 4RHOD_Repeat_2 Member 68.1 0.91 2E-05 32.4 -1.4 42 21-66 64-106 (109)
83 cd01521 RHOD_PspE2 Member of t 67.6 0.86 1.9E-05 32.7 -1.6 43 22-69 63-107 (110)
84 cd01534 4RHOD_Repeat_3 Member 67.5 0.91 2E-05 31.6 -1.5 40 22-66 55-94 (95)
85 cd01528 RHOD_2 Member of the R 64.9 1 2.2E-05 31.7 -1.7 39 23-65 58-96 (101)
86 cd01446 DSP_MapKP N-terminal r 64.8 0.84 1.8E-05 33.8 -2.2 42 22-67 74-126 (132)
87 cd01522 RHOD_1 Member of the R 64.4 2 4.2E-05 31.4 -0.3 43 23-69 64-106 (117)
88 PLN02160 thiosulfate sulfurtra 64.1 1.3 2.8E-05 33.7 -1.4 49 22-74 80-128 (136)
89 cd01527 RHOD_YgaP Member of th 57.1 1.7 3.6E-05 30.3 -1.7 42 23-68 54-95 (99)
90 KOG1717 Dual specificity phosp 56.9 8.1 0.00018 33.7 2.1 40 94-137 5-44 (343)
91 PRK07688 thiamine/molybdopteri 52.2 11 0.00024 33.1 2.3 35 92-127 276-316 (339)
92 cd01518 RHOD_YceA Member of th 50.9 2.1 4.6E-05 30.0 -2.0 40 22-65 60-99 (101)
93 cd01526 RHOD_ThiF Member of th 45.1 3.5 7.7E-05 30.1 -1.6 43 23-69 72-115 (122)
94 cd01530 Cdc25 Cdc25 phosphatas 39.6 5.3 0.00012 29.5 -1.4 34 23-56 68-114 (121)
95 KOG3636 Uncharacterized conser 39.4 17 0.00036 34.0 1.4 43 94-136 308-354 (669)
96 PRK09444 pntB pyridine nucleot 38.8 22 0.00047 32.9 2.1 17 122-138 348-371 (462)
97 PRK00162 glpE thiosulfate sulf 37.8 5.7 0.00012 28.1 -1.5 43 24-70 59-101 (108)
98 PF13350 Y_phosphatase3: Tyros 32.1 51 0.0011 25.2 3.0 45 90-134 25-74 (164)
99 PRK07878 molybdopterin biosynt 31.4 9.1 0.0002 34.1 -1.5 42 23-68 343-384 (392)
100 PRK05597 molybdopterin biosynt 30.3 8.3 0.00018 33.9 -2.0 39 23-65 314-352 (355)
101 PF04343 DUF488: Protein of un 29.8 48 0.001 24.3 2.4 20 97-116 2-22 (122)
102 COG1282 PntB NAD/NADP transhyd 23.3 59 0.0013 29.6 2.1 10 121-130 349-358 (463)
103 TIGR01244 conserved hypothetic 21.4 1E+02 0.0022 23.0 2.9 28 93-120 13-40 (135)
No 1
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.6e-15 Score=129.70 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=79.7
Q ss_pred CCCCceecCCCCc-cccceeeeeeecccCeeeecccccCCceeeeecccCCCCCCchhhHHHHHHHHhhc-CCCcccHHH
Q 030741 22 RSSPLILAPKTNQ-DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQK-RVRSVEAKE 99 (172)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~~~~~~~~~~~~~~~~-~~~~Is~~e 99 (172)
+...+|.|-+.+. .++|+||++|++||++|++|+| |+..|..++.|....... . ....+..+. .-..++.++
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdG----G~~~W~~~g~p~~~~~~~-~-~~~~f~~~~~~~~~~~~~~ 162 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDG----GLPAWKAAGLPLETEPPE-P-PPTTFSAKYNVKAVVDATL 162 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecC----CHHHHHHcCCCccCCCCC-C-CCccccccCCccccCCHHH
Confidence 4456788887666 9999999999999999999999 666665554443321000 0 000111111 112467788
Q ss_pred HHHHhcCCCeEEEEeCChhhhhh----------CCCCCcEeechhhHHh
Q 030741 100 ALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIK 138 (172)
Q Consensus 100 l~~~l~~~~~~lIDVR~~~Ey~~----------ghIPgAinIP~~~l~~ 138 (172)
++..++.+..+|||+|++++|.. ||||||+|||+.++.+
T Consensus 163 ~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~ 211 (285)
T COG2897 163 VADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVD 211 (285)
T ss_pred HHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhc
Confidence 88877777889999999999987 9999999999998876
No 2
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.33 E-value=2.3e-13 Score=117.56 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCCCceecCCCCc-cccceeeeeeecccCeeeecccccCCceeeeecccCCCCCCch--------hhHHHH---------
Q 030741 22 RSSPLILAPKTNQ-DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAE--------EDWKTK--------- 83 (172)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~~~--------~~~~~~--------- 83 (172)
...++|.+..++. .++|+||+|+++||++|++|+| |+..|..++.|...... .+-+..
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdG----G~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDG----GLPKWRASGYDVESSASGDAILKASAASEAIEKVYQGQTV 177 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCC----CHHHHHHcCCCcccCCCccccccccccccccccccccCCC
Confidence 4567888876654 7889999999999999999999 66666554433222100 000000
Q ss_pred --HHHHhh-cCCCcccHHHHHHHhcCCCeEEEEeCChhhh-----------hhCCCCCcEeechhhHH
Q 030741 84 --RELLLQ-KRVRSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLI 137 (172)
Q Consensus 84 --~~~~~~-~~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey-----------~~ghIPgAinIP~~~l~ 137 (172)
..+... ..-..++.+++.+.+++++.+|||+|++.|| ..||||||+|||+..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~ 245 (320)
T PLN02723 178 SPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQML 245 (320)
T ss_pred CCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhc
Confidence 000000 0112368889988887767899999999888 46999999999997654
No 3
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.29 E-value=6e-13 Score=124.00 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=78.0
Q ss_pred CCCCceecCCCC-ccccceeeeeeecccCeeeecccccCCceeeeecccCCCCCCchhhHHHHHHHHhhcCCCcccHHHH
Q 030741 22 RSSPLILAPKTN-QDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEA 100 (172)
Q Consensus 22 ~~~~~~~~~~~~-~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~Is~~el 100 (172)
...++|.+..++ ..++|+||+|+++||++|++|+| |+..|..++.|..+............ ....-..++.+++
T Consensus 80 ~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdG----G~~aW~~ag~p~~~~~~~~~~~~~~~-~~~~~~~v~~e~v 154 (610)
T PRK09629 80 PDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDG----GVLAWEAQALPLSTDVPPVAGGPVTL-TLHDEPTATREYL 154 (610)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCC----CHHHHHHcCCccccCCCCCCCcceee-ccCCcccccHHHH
Confidence 456788888766 48899999999999999999999 77777665544322110000000000 1111235789999
Q ss_pred HHHhcCCCeEEEEeCChhhhh--------hCCCCCcEeechhhH
Q 030741 101 LRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRL 136 (172)
Q Consensus 101 ~~~l~~~~~~lIDVR~~~Ey~--------~ghIPgAinIP~~~l 136 (172)
.+.+++++++|||+|+++||. .||||||+|||+.++
T Consensus 155 ~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~ 198 (610)
T PRK09629 155 QSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAG 198 (610)
T ss_pred HHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHh
Confidence 988877778999999999994 699999999998654
No 4
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.18 E-value=3.9e-12 Score=107.69 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=73.1
Q ss_pred CCCceecCCCCc-cccceeeeeeecccCeeeecccccCCceeeeecccCCCCC----CchhhHHHHHHHHhhcCCCcccH
Q 030741 23 SSPLILAPKTNQ-DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKS----PAEEDWKTKRELLLQKRVRSVEA 97 (172)
Q Consensus 23 ~~~~~~~~~~~~-~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s----~~~~~~~~~~~~~~~~~~~~Is~ 97 (172)
..++|.+..++. .++|+||+++++||++|++++| |+..|..++.|-.. +....+.. .. ..-...+.
T Consensus 87 d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~G----G~~~W~~~g~p~~~~~~~~~~~~~~~----~~-~~~~~~~~ 157 (281)
T PRK11493 87 DKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAG----GLAGWQRDDLLLEEGAVELPEGEFNA----AF-NPEAVVRL 157 (281)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCC----CHHHHHHcCCCccCCCCCCCCCcccc----cC-CccceecH
Confidence 456888887755 7899999999999999999999 66665544333211 10011111 00 01113455
Q ss_pred HHHHHHhcCCCeEEEEeCChhhhh-----------hCCCCCcEeechhhHHh
Q 030741 98 KEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIK 138 (172)
Q Consensus 98 ~el~~~l~~~~~~lIDVR~~~Ey~-----------~ghIPgAinIP~~~l~~ 138 (172)
+++...+++++.+|||+|++.||. .||||||+|+|+.++..
T Consensus 158 ~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~ 209 (281)
T PRK11493 158 TDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR 209 (281)
T ss_pred HHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC
Confidence 676666666678999999999984 69999999999887753
No 5
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.07 E-value=1.4e-10 Score=88.80 Aligned_cols=63 Identities=33% Similarity=0.557 Sum_probs=52.3
Q ss_pred cCCCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhhhhHHHHHhhhhhcccCCCCccChhHHHh
Q 030741 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS 169 (172)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~~~d~~k~~~f~~~g~~~g~~~Np~F~~~ 169 (172)
.....++.++++++++.++.++||||+++||..||||.+||||+..... .|+..||+|..+
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-------------------~~~l~~~eF~kq 80 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-------------------AGALKNPEFLKQ 80 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-------------------ccccCCHHHHHH
Confidence 3456789999999998888999999999999999999999999965432 356778888777
Q ss_pred hh
Q 030741 170 IA 171 (172)
Q Consensus 170 v~ 171 (172)
|.
T Consensus 81 vg 82 (136)
T KOG1530|consen 81 VG 82 (136)
T ss_pred hc
Confidence 64
No 6
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.99 E-value=2.7e-10 Score=97.11 Aligned_cols=104 Identities=21% Similarity=0.274 Sum_probs=67.7
Q ss_pred CCceecCC--CCc-cccceeeeeeecccCeeeecccccCCceeeeecccCCCCCC--------chhhHHHHHHHHhhcCC
Q 030741 24 SPLILAPK--TNQ-DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSP--------AEEDWKTKRELLLQKRV 92 (172)
Q Consensus 24 ~~~~~~~~--~~~-~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~--------~~~~~~~~~~~~~~~~~ 92 (172)
-|+|.|.. ++- .++|.||++|+|||+.|.||+| |+..|...+.|..+. .+..|..-...+
T Consensus 87 d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~G----G~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il----- 157 (286)
T KOG1529|consen 87 DHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNG----GFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSIL----- 157 (286)
T ss_pred CeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecC----cHHHHHHcCCccccccccCCCCCccchhhcchHHH-----
Confidence 35888877 333 9999999999999999999999 555555555444332 111111100000
Q ss_pred CcccHHHHHHH-hcCCCeEEEEeCChhhh-----------hhCCCCCcEeechhhHHh
Q 030741 93 RSVEAKEALRL-QKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 93 ~~Is~~el~~~-l~~~~~~lIDVR~~~Ey-----------~~ghIPgAinIP~~~l~~ 138 (172)
..-+++... +...++.+||.|...+| ..||||||+|+|+.++..
T Consensus 158 --~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~ 213 (286)
T KOG1529|consen 158 --ATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLD 213 (286)
T ss_pred --HHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcc
Confidence 112222211 23456899999988877 359999999999988754
No 7
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=98.98 E-value=4.1e-10 Score=80.89 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=40.3
Q ss_pred CcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
+.|+++++.+++++++.+|||||++.||+.||||||+|||+.++.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~ 46 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR 46 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh
Confidence 358999999988777789999999999999999999999988764
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=98.96 E-value=9.5e-10 Score=78.27 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=38.0
Q ss_pred ccHHHHHHHhcCC--CeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
|+++|+.++++++ +++|||||++.||..||||||+|+|+.++..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~ 46 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQ 46 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHH
Confidence 5788998887654 5789999999999999999999999987754
No 9
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=98.94 E-value=1.4e-09 Score=79.25 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=42.1
Q ss_pred CCCcccHHHHHHHhcCC-CeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 91 ~~~~Is~~el~~~l~~~-~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
..+.++++++.++++++ +.+|||||++.||..||||||+|+|+.++...
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~ 57 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR 57 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH
Confidence 34679999999988654 57899999999999999999999999887654
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=98.91 E-value=9.1e-10 Score=80.11 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=43.8
Q ss_pred CCCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhh
Q 030741 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141 (172)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~ 141 (172)
..+.++++|+.+++++++.+|||||++.||..||||||+|+|+..+.....
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~ 53 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMR 53 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHH
Confidence 356799999999886667899999999999999999999999988765443
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=98.88 E-value=1.5e-09 Score=77.62 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=37.9
Q ss_pred ccHHHHHHHhcC-CCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 95 VEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
|+++|+.+++++ ++.+|||||++.||+.||||||+|+|+.++..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~ 45 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYF 45 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchH
Confidence 578899988765 45899999999999999999999999877643
No 12
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=98.84 E-value=3.8e-09 Score=77.62 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=40.1
Q ss_pred CcccHHHHHHHhcCC------CeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 93 ~~Is~~el~~~l~~~------~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
+.|+++|++++++++ +.+|||||++ ||..||||||+|||+..+...
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~ 53 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT 53 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH
Confidence 568999999988754 5889999999 999999999999999887654
No 13
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=98.83 E-value=3.9e-09 Score=75.79 Aligned_cols=43 Identities=21% Similarity=0.543 Sum_probs=37.5
Q ss_pred ccHHHHHHHhcCC--CeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
|+++|+.+++.++ +++|||||++.||..||||||+|+|+.++.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~ 45 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVF 45 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhc
Confidence 6789999988643 589999999999999999999999997653
No 14
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=98.82 E-value=3.6e-09 Score=79.67 Aligned_cols=42 Identities=38% Similarity=0.555 Sum_probs=37.0
Q ss_pred ccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
|+++|+.++++ ++.+|||||++.||..||||||+|||+..+.
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~ 42 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDE 42 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChh
Confidence 67899998886 5689999999999999999999999996543
No 15
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=98.82 E-value=5.4e-09 Score=77.88 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=41.5
Q ss_pred CCcccHHHHHHHhcC-CCeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 92 ~~~Is~~el~~~l~~-~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
...|+++|+.+++++ ++.+|||||++.||..+|||||+|||+..+...
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~ 55 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK 55 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh
Confidence 457899999998865 568899999999999999999999999887643
No 16
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=98.81 E-value=5e-09 Score=74.72 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=40.0
Q ss_pred CcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
..|+++|+.++++++ .+|||+|++.||..+|||||+|+|+.++..
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~ 46 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLES 46 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcc
Confidence 468999999988764 899999999999999999999999988754
No 17
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=98.80 E-value=7.8e-09 Score=77.54 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=40.5
Q ss_pred CcccHHHHHHHhcC------CCeEEEEeCChhhhhhCCCCCcEeechh-hHHhhh
Q 030741 93 RSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIY-RLIKEW 140 (172)
Q Consensus 93 ~~Is~~el~~~l~~------~~~~lIDVR~~~Ey~~ghIPgAinIP~~-~l~~~~ 140 (172)
..|+++|+.+++++ ++++|||||++.||..||||||+|||+. .+...+
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~ 56 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF 56 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH
Confidence 46899999998864 3689999999999999999999999997 465543
No 18
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=98.78 E-value=1.1e-08 Score=74.95 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=41.5
Q ss_pred CcccHHHHHHHhcC--CCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhhh
Q 030741 93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142 (172)
Q Consensus 93 ~~Is~~el~~~l~~--~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~~ 142 (172)
+.|+++|+.+++.+ ++.+|||||++ ||..||||||+|+|+.++......
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~ 52 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQ 52 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHH
Confidence 56899999998865 35789999999 999999999999999987655443
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=98.77 E-value=9e-09 Score=73.88 Aligned_cols=43 Identities=35% Similarity=0.493 Sum_probs=37.6
Q ss_pred cHHHHHHHhc-CCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 96 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 96 s~~el~~~l~-~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
+++++.++++ +++.+|||+|++.||..||||||+|+|+.++.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~ 45 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPD 45 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhh
Confidence 5778888776 667999999999999999999999999987653
No 20
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=98.76 E-value=8.3e-09 Score=73.77 Aligned_cols=41 Identities=27% Similarity=0.570 Sum_probs=36.3
Q ss_pred cHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhH
Q 030741 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRL 136 (172)
Q Consensus 96 s~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l 136 (172)
|++|+++++.+++++|||+|++.+|..||||||+|+|...+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~ 41 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSL 41 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGG
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccc
Confidence 58899998866789999999999999999999999999544
No 21
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=98.75 E-value=1.4e-08 Score=71.51 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=38.0
Q ss_pred ccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
++++|+.+++ .++.++||+|++.+|..||||||+|+|..++.+.
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~ 44 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR 44 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH
Confidence 4688888887 4567899999999999999999999999887654
No 22
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=98.73 E-value=1.6e-08 Score=72.62 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=39.0
Q ss_pred ccHHHHHHHhcCC--CeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
|+++|+.++++.+ +.+|||||++.||..+|||||+|+|+.++...
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~ 48 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER 48 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH
Confidence 6889999888654 57899999999999999999999999877543
No 23
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=98.69 E-value=2.2e-08 Score=71.29 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=37.1
Q ss_pred ccHHHHHHHhcCCCeEEEEeCChhhh-hhCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~~Ey-~~ghIPgAinIP~~~l~ 137 (172)
|+++|+.+++++++.+|||+|++.+| ..||||||+|+|+..+.
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~ 44 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLE 44 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhh
Confidence 57889988887667899999999998 57999999999987664
No 24
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=98.68 E-value=1.7e-08 Score=74.90 Aligned_cols=43 Identities=33% Similarity=0.388 Sum_probs=37.6
Q ss_pred ccHHHHHHHhcC-CCeEEEEeCChhhhh-hCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDVR~~~Ey~-~ghIPgAinIP~~~l~ 137 (172)
|+++|+.+++++ ++.+|||||++.||+ .||||||+|+|+.++.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~ 45 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYP 45 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcc
Confidence 578899998866 578999999999999 9999999999987553
No 25
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=98.67 E-value=3.4e-08 Score=69.54 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=39.2
Q ss_pred ccHHHHHHHhcC-CCeEEEEeCChhhhhh--CCCCCcEeechhhHHhh
Q 030741 95 VEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKE 139 (172)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDVR~~~Ey~~--ghIPgAinIP~~~l~~~ 139 (172)
|+++++.+++++ .+.+|||||++.||.. ||||||+|+|+.++.+.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~ 49 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW 49 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH
Confidence 678899888765 4689999999999999 99999999999887654
No 26
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=98.63 E-value=3.9e-08 Score=71.88 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=39.5
Q ss_pred CcccHHHHHHHhcC--CCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 93 ~~Is~~el~~~l~~--~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
..++++|+.+++.+ ++.+|||||++.||..||||||+|+|...+.
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~ 54 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC 54 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh
Confidence 35899999998864 3589999999999999999999999998875
No 27
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=98.59 E-value=5.7e-08 Score=71.71 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=39.2
Q ss_pred ccHHHHHHHhcCCCeEEEEeCCh-------hhhhhCCCCCcEeechhhHHh
Q 030741 95 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~-------~Ey~~ghIPgAinIP~~~l~~ 138 (172)
++++++.+++.+++.+|||+|++ .+|..||||||+|+|+.++..
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~ 52 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLD 52 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccc
Confidence 68899999887667899999999 999999999999999987754
No 28
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=98.58 E-value=4.9e-08 Score=71.42 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=37.3
Q ss_pred ccHHHHHHHhcCCCeEEEEeCChhhhhh-----------CCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~~Ey~~-----------ghIPgAinIP~~~l~ 137 (172)
++++++.+++++++.+|||||+..||.. ||||||+|+|+.++.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~ 54 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLL 54 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhc
Confidence 4788888888766689999999999976 999999999998765
No 29
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=98.50 E-value=1.6e-07 Score=70.66 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=38.3
Q ss_pred ccHHHHHHHhcC--CCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~--~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
|+++++.++++. ++.+|||||+..+|..+|||||+|+|+..+.
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~ 46 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTIL 46 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHH
Confidence 789999998864 4689999999999999999999999998754
No 30
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=98.44 E-value=1.8e-07 Score=66.38 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=30.6
Q ss_pred HhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 103 ~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
++++++++|||||++.||..+|||||+|+|...+.
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~ 39 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLE 39 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHH
Confidence 34556789999999999999999999999998764
No 31
>PRK07411 hypothetical protein; Validated
Probab=98.43 E-value=3e-07 Score=81.78 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=41.9
Q ss_pred cCCCcccHHHHHHHhcCC--CeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 90 ~~~~~Is~~el~~~l~~~--~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
.....|+++|+.++++.+ +.+|||||++.||+.||||||+|||+.++..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~ 329 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIEN 329 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhc
Confidence 445689999999987643 4789999999999999999999999987753
No 32
>PRK01415 hypothetical protein; Validated
Probab=98.42 E-value=2.2e-07 Score=78.25 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=41.0
Q ss_pred CcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
+.|+|+++.+++++++++|||||++.||+.||||||+|+|+..+.
T Consensus 112 ~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~ 156 (247)
T PRK01415 112 EYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK 156 (247)
T ss_pred cccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh
Confidence 579999999999888899999999999999999999999987654
No 33
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=98.40 E-value=2.7e-07 Score=63.11 Aligned_cols=39 Identities=36% Similarity=0.602 Sum_probs=33.2
Q ss_pred HHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 101 LRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 101 ~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
.+++++++..|||+|++.||..+|||||+|+|...+...
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~ 41 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEER 41 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhH
Confidence 444555679999999999999999999999999887654
No 34
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=98.40 E-value=2.7e-07 Score=65.51 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=28.4
Q ss_pred CCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 106 ~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
+++.+|||||++.||..||||||+|+|+.++.
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~ 41 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALV 41 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhc
Confidence 45689999999999999999999999987664
No 35
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=98.36 E-value=5e-07 Score=78.39 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
...++++|+.+++++++++|||||++.||+.||||||+|+|+..+.
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~ 156 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR 156 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh
Confidence 3568999999988877899999999999999999999999998775
No 36
>PLN02160 thiosulfate sulfurtransferase
Probab=98.35 E-value=3.6e-07 Score=70.01 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=37.0
Q ss_pred CCCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCc--Eeech
Q 030741 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQI 133 (172)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgA--inIP~ 133 (172)
.+..++++|+.+++++ +.+|||||++.||..|||||| +|+|+
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~ 56 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPY 56 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccc
Confidence 4678999999988865 468999999999999999999 89997
No 37
>PRK05320 rhodanese superfamily protein; Provisional
Probab=98.34 E-value=5.5e-07 Score=76.08 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCcccHHHHHHHhcC------CCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 92 VRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 92 ~~~Is~~el~~~l~~------~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
.+.++++|+.+++++ ++.+|||||++.||+.||||||+|+|+.++.
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~ 160 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT 160 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh
Confidence 467999999887754 2478999999999999999999999997753
No 38
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=98.32 E-value=4.2e-07 Score=62.81 Aligned_cols=34 Identities=35% Similarity=0.743 Sum_probs=30.0
Q ss_pred CCCeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 106 ~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
+++.+|||+|++.||..+|||||+|+|...+...
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~ 35 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDR 35 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccC
Confidence 3468999999999999999999999999877643
No 39
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=98.27 E-value=1e-06 Score=77.75 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=40.3
Q ss_pred CCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
++.|+++|+.+++++ +.+|||||++.||..||||||+|+|+..+.+
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~ 47 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLEL 47 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHH
Confidence 456899999998865 4899999999999999999999999987754
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=98.26 E-value=8.5e-07 Score=64.87 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhh
Q 030741 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141 (172)
Q Consensus 107 ~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~ 141 (172)
....+||+|+++||..||||||+|||+.++...+.
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~ 51 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIA 51 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHH
Confidence 35679999999999999999999999988865443
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.23 E-value=1.3e-06 Score=74.10 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=38.7
Q ss_pred cccHHHHHHHhcCCCeEEEEeCC----------hhhhhhCCCCCcEeechhhHH
Q 030741 94 SVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDVR~----------~~Ey~~ghIPgAinIP~~~l~ 137 (172)
.++++++.+.+++++++|||+|+ +.+|..||||||+|+|+..+.
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~ 59 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALS 59 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhc
Confidence 58999999999888899999996 678999999999999976653
No 42
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=98.21 E-value=1.3e-06 Score=76.74 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=34.4
Q ss_pred cHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 96 s~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
...++.+++. ++.+|||||++.||..||||||+|+|+.+..+
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~e 45 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEE 45 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhH
Confidence 4566666653 46899999999999999999999999976544
No 43
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=98.21 E-value=1.8e-06 Score=66.28 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=36.3
Q ss_pred ccHHHHHHHhc----CCCeEEEEeCCh--------hhhhh------------CCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~----~~~~~lIDVR~~--------~Ey~~------------ghIPgAinIP~~~l~ 137 (172)
++++++.+.++ +++++|||+|.. .+|.. ||||||+|+|+.++.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~ 67 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECL 67 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhh
Confidence 57888888876 467999999987 88987 999999999987653
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=98.20 E-value=1.4e-06 Score=64.09 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCCeEEEEeCChhhhhhCCCCCcEeechhhHHhhh
Q 030741 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW 140 (172)
Q Consensus 106 ~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~ 140 (172)
..+-+|||+|++.||+.+|||||+|+|+.++.+.+
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l 52 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERI 52 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccEECCHHHHHHHH
Confidence 34567999999999999999999999998876543
No 45
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=98.17 E-value=1.8e-06 Score=76.41 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=40.2
Q ss_pred cccHHHHHHHhcCCCeEEEEeCChhhhhhCCCC---CcEeechhhHHh
Q 030741 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIK 138 (172)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIP---gAinIP~~~l~~ 138 (172)
.++++|+.+++++++.+|||||++.||+.+||| ||+|||+.++.+
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~ 319 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITD 319 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhc
Confidence 689999999887767899999999999999998 599999988853
No 46
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=98.17 E-value=2e-06 Score=67.77 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHhcCCCeEEEEeCChh----hhhhC---------CCCCcEeech
Q 030741 91 RVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQI 133 (172)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDVR~~~----Ey~~g---------hIPgAinIP~ 133 (172)
....|+++|+.+++++++.+|||||++. ||..| |||||+|+|+
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~ 89 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPN 89 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecc
Confidence 3567999999999987788999999866 45444 9999999995
No 47
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=98.14 E-value=2.1e-06 Score=66.44 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHhc-CCCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhh
Q 030741 101 LRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141 (172)
Q Consensus 101 ~~~l~-~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~ 141 (172)
.+++. +.+++|||||++.+|+.||||||+|+|..++.+.+.
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~ 44 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALE 44 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHH
Confidence 34443 335899999999999999999999999888765443
No 48
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=98.11 E-value=3.5e-06 Score=74.93 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHhcCC-CeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 91 ~~~~Is~~el~~~l~~~-~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
....|+++|+.++++++ +.+|||||++.||+.+|||||+|+|+.++..
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~ 333 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILS 333 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcc
Confidence 34579999999988644 5789999999999999999999999987753
No 49
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=98.10 E-value=1.9e-06 Score=74.78 Aligned_cols=31 Identities=42% Similarity=0.569 Sum_probs=27.3
Q ss_pred CeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 108 ~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
+.+|||||++.||..||||||+|||+.+..+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~e 32 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEE 32 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchh
Confidence 4589999999999999999999999965544
No 50
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.10 E-value=3.1e-06 Score=79.39 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=38.7
Q ss_pred cccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhh
Q 030741 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYR 135 (172)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~ 135 (172)
.|+++++.+++++++++|||||++.+|..||||||+|+|+..
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~ 51 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKR 51 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhH
Confidence 589999999998878999999999999999999999998754
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.01 E-value=6.8e-06 Score=58.71 Aligned_cols=39 Identities=36% Similarity=0.555 Sum_probs=32.9
Q ss_pred HHHhcCCCeEEEEeCChhhhhhCCCCC-cEeechhhHHhh
Q 030741 101 LRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKE 139 (172)
Q Consensus 101 ~~~l~~~~~~lIDVR~~~Ey~~ghIPg-AinIP~~~l~~~ 139 (172)
......++.+|||||++.||+.+|||+ ++|+|+.++...
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~ 52 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAA 52 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhh
Confidence 333445679999999999999999999 999999888764
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.92 E-value=1e-05 Score=71.09 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHhhh
Q 030741 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW 140 (172)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~ 140 (172)
...++++++.+.. .+.+|||||+++||+.+|||||+|+|+.++...+
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~ 306 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGA 306 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcc
Confidence 4467888887543 3578999999999999999999999998886654
No 53
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=97.90 E-value=1.4e-05 Score=69.19 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=38.7
Q ss_pred CcccHHHHHHHhcCCCeEEEEeC--------C-hhhhhhCCCCCcEeechhhHHh
Q 030741 93 RSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR--------~-~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
..|+++++.+++++++++|||+| + ..+|..||||||+|+++.++..
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~ 76 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISD 76 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcC
Confidence 46999999999887789999996 3 3689999999999999876543
No 54
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=1.9e-05 Score=68.83 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=42.1
Q ss_pred cCCCcccHHHHHHHhcCC------CeEEEEeCChhhhhhCCCCCcEeechhhHHhh
Q 030741 90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 139 (172)
Q Consensus 90 ~~~~~Is~~el~~~l~~~------~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~ 139 (172)
..++.|+++.++.++.+. .++|||+|-+-||..|||+||+||+..+..+.
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~ 208 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQD 208 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhh
Confidence 357899999999987542 26799999999999999999999998777653
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=97.81 E-value=1.2e-05 Score=70.90 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=42.0
Q ss_pred CcccHHHHHHHhcC-CCeEEEEeCChhhhhhCCCCCcEeechhhHHhhh
Q 030741 93 RSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW 140 (172)
Q Consensus 93 ~~Is~~el~~~l~~-~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~ 140 (172)
.+|+..|+++++++ ...++||||++.||+..|+|+|+|||+.++....
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~ 365 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS 365 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh
Confidence 46899999998865 5689999999999999999999999999887543
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.43 E-value=7.6e-05 Score=68.12 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCeEEEEeCChhhhhhCCCCC----cEeechhhHHhhhh
Q 030741 107 NNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWT 141 (172)
Q Consensus 107 ~~~~lIDVR~~~Ey~~ghIPg----AinIP~~~l~~~~~ 141 (172)
++.++||||+++||+.+|||| |+|+|+.++...+.
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~ 444 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFG 444 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHh
Confidence 468999999999999999999 99999999876544
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=96.63 E-value=0.0015 Score=56.52 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=42.3
Q ss_pred CcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
..|+|+|+.+++.++++++||+|..-||+.||..||++.+...+.+
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre 158 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE 158 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh
Confidence 4689999999999999999999999999999999999999887765
No 58
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=96.58 E-value=0.00024 Score=54.48 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=33.4
Q ss_pred CCCceecCCC---CccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKT---NQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~---~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+..+ +..++|.||+++++||++|++++| |+..|
T Consensus 95 ~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildG----G~~~W 136 (138)
T cd01445 95 DKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDG----GFFEW 136 (138)
T ss_pred CCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCC----CHHHh
Confidence 4678888875 668999999999999999999999 76554
No 59
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0045 Score=53.34 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=37.7
Q ss_pred CcccHHHHHHHhcCC-----CeEEEEeCCh--hhhhhCCCCCcEeechhhHHhhhh
Q 030741 93 RSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWT 141 (172)
Q Consensus 93 ~~Is~~el~~~l~~~-----~~~lIDVR~~--~Ey~~ghIPgAinIP~~~l~~~~~ 141 (172)
..|+++.+.+.++++ +..+++++.. .+|..+|||||++++++.....-.
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~ 66 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV 66 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC
Confidence 358999999988755 4555555555 789999999999999988765443
No 60
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.93 E-value=0.0013 Score=57.11 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=62.7
Q ss_pred ceecC-CCCccccceeeeeeecccCeeeecccccCCceeeeecccCCCCCCchhhHHHHHHHHhhcCCCcccHHHHHHHh
Q 030741 26 LILAP-KTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQ 104 (172)
Q Consensus 26 ~~~~~-~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~Is~~el~~~l 104 (172)
+|.+- .++..+.+++|.|+..|+ ++.+++| |+..|.....+........+.. .... ....+..+++.+.+
T Consensus 77 vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~G----G~~aw~~~~~~~~~~~~~~~~~---~vl~-g~tg~gKt~Ll~~L 147 (311)
T TIGR03167 77 PLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEG----GYKAYRRFVIDQLEELPQPFPL---IVLG-GMTGSGKTELLHAL 147 (311)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC-CEEEecC----hHHHHHHhhhhhhhccCCCCce---eccC-CCCCcCHHHHHHHH
Confidence 56666 467788888999999999 5888999 7766644332111110011111 1122 24668889999888
Q ss_pred cCCCeEEEEeCChhhhhh---CCCC
Q 030741 105 KENNFVILDVRPEAEFKE---AHPP 126 (172)
Q Consensus 105 ~~~~~~lIDVR~~~Ey~~---ghIP 126 (172)
.+.+..|||+|+..+|.. ||||
T Consensus 148 ~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 148 ANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred hcCCCeEEECCchHHhcCcccCCCC
Confidence 777789999999999987 8888
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=94.32 E-value=0.028 Score=49.63 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=37.1
Q ss_pred CCcccHHHHHHHhcCC------CeEEEEeCChhhhhhCCCCCcEeechhh
Q 030741 92 VRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYR 135 (172)
Q Consensus 92 ~~~Is~~el~~~l~~~------~~~lIDVR~~~Ey~~ghIPgAinIP~~~ 135 (172)
+++|+++.++.++++. +.+|||.|-+-||..|||-+|+||.-.+
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~ 290 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK 290 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH
Confidence 6789999999877532 3679999999999999999999997543
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=93.78 E-value=0.054 Score=47.16 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCeEEEEeCChhhhhhCCCCCcEeechhhHHhhhhhhHHHHH
Q 030741 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148 (172)
Q Consensus 107 ~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~~~~~~d~~k~ 148 (172)
.+..+||||.|.||..|+.|+++|+|...-.+...-....|+
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk 55 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKK 55 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhh
Confidence 467899999999999999999999997655554443333333
No 63
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=90.62 E-value=0.076 Score=46.18 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=33.5
Q ss_pred ccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 95 Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
-+++++.+.+.. ...++|+|....+..+||||++|+|...+.
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~~ 57 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQTE 57 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHHH
Confidence 356777766543 467899999999999999999999985554
No 64
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=89.59 E-value=0.036 Score=48.88 Aligned_cols=90 Identities=10% Similarity=-0.015 Sum_probs=56.7
Q ss_pred CCCceecC-CCCccccceeeeeeecccCeeeecccccCCceeeeecccCCCCCCchhhHHHHHHHHhhcCCCcccHHHHH
Q 030741 23 SSPLILAP-KTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEAL 101 (172)
Q Consensus 23 ~~~~~~~~-~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~Is~~el~ 101 (172)
..+.|.+- .++.-+.+++|+++..|++ +.++.| |+..|.....+....... ...++.-.......-.++.
T Consensus 88 ~~~ivvyC~rgG~RS~~aa~~L~~~G~~-v~~L~G----G~~awr~~~~~~~~~~~~----~~~~ivl~G~TGsGKT~iL 158 (345)
T PRK11784 88 NPRGLLYCWRGGLRSGSVQQWLKEAGID-VPRLEG----GYKAYRRFVIDTLEEAPA----QFPLVVLGGNTGSGKTELL 158 (345)
T ss_pred CCeEEEEECCCChHHHHHHHHHHHcCCC-cEEEcC----CHHHHHHhhHHHHhhhcc----cCceEecCCCCcccHHHHH
Confidence 45577777 4667788889999999995 888999 777775432111110000 0011111223445566677
Q ss_pred HHhcCCCeEEEEeCChhhhh
Q 030741 102 RLQKENNFVILDVRPEAEFK 121 (172)
Q Consensus 102 ~~l~~~~~~lIDVR~~~Ey~ 121 (172)
..+.+.+..+||+|+..+|.
T Consensus 159 ~~L~~~~~~vlDlE~~aehr 178 (345)
T PRK11784 159 QALANAGAQVLDLEGLANHR 178 (345)
T ss_pred HHHHhcCCeEEECCchhhhc
Confidence 76666678899999999997
No 65
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=89.22 E-value=0.056 Score=42.48 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=39.2
Q ss_pred CCCCCceecCCCCc-cccceeeeeeecccCeeeecccccCCceeeeecccCC
Q 030741 21 YRSSPLILAPKTNQ-DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKP 71 (172)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p 71 (172)
.+..++|.+-.++. .+.+++++++.+||++|.+++| |+..|..++.|
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~G----G~~aW~~aG~P 161 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPD----GTDGWQAAGLP 161 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecC----CHHHHHHcCCC
Confidence 46678899988876 7888999999999999999999 88888666543
No 66
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=88.76 E-value=0.047 Score=39.44 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+..++..+.+.||+++..|++++.++.| |+..|
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~G----G~~~W 116 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDG----SWSEW 116 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCC----hHHHh
Confidence 5679999988889999999999999999999999 76554
No 67
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=87.98 E-value=0.073 Score=36.11 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecc
Q 030741 21 YRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAA 68 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~ 68 (172)
....++|.+..++..+.++++.++..|++++.++.| |+..|...
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~G----G~~~w~~~ 97 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDG----GYKEWSAA 97 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecC----CHHHHHhc
Confidence 345568888888888999999999999999999999 77766443
No 68
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=85.48 E-value=0.12 Score=36.52 Aligned_cols=39 Identities=5% Similarity=0.139 Sum_probs=32.6
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+..++..+.+.+++|+.+|+++|.++.| |+..|
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~G----G~~a~ 103 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDG----GINAL 103 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeC----cHHHh
Confidence 5578888888777788888999999999999999 77655
No 69
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=83.89 E-value=0.16 Score=36.94 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCCCceecCCC-CccccceeeeeeecccCeeeecccccCCceeeee
Q 030741 22 RSSPLILAPKT-NQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQN 66 (172)
Q Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~ 66 (172)
...++|++-.+ +..+.+.+++++..|++++.++.| |+..|.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~G----G~~~W~ 119 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDG----GLQAWK 119 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecC----CHHHHH
Confidence 35568888888 588999999999999999999999 766553
No 70
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.24 E-value=0.94 Score=40.00 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=36.3
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecccC
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATK 70 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~ 70 (172)
...++|.+-.++..+.++++.|+..|++++.+++| |+..|.....
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~G----G~~~W~~~g~ 100 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAG----GFSAWKDAGL 100 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecC----cHHHHHhcCC
Confidence 45678999998888888999999999999999999 6655554433
No 71
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=80.70 E-value=0.22 Score=35.15 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+..++..+.+.+++++..|++++.++.| |+..|
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~G----g~~~W 104 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPG----SWLDW 104 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCC----cHHHH
Confidence 35578888888888889999999999999999998 66544
No 72
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=80.25 E-value=0.19 Score=35.10 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=33.2
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+-.++..+.+++++++..|++++.++.| |+..|
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~G----g~~~w 99 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEG----GFKDW 99 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecC----cHHHH
Confidence 34578888888777889999999999999999999 66555
No 73
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=79.65 E-value=0.26 Score=36.66 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=32.0
Q ss_pred CCCCceecCC-CCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPK-TNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~-~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+-. ++..++++||+++.+|+ ++.+++| |+..|
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~G----G~~aw 124 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEG----GYKAY 124 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCC----cHHHH
Confidence 3567888886 67788999999999999 5999999 76554
No 74
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=79.26 E-value=0.38 Score=32.15 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=35.3
Q ss_pred CCCCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 20 NYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..+..++|.+...+..+.+.++.++..|+.++.++.| |+..|
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~g----G~~~w 88 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEG----GMLAW 88 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecC----Chhhc
Confidence 3456678888888889999999999999999999999 66544
No 75
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.16 E-value=0.3 Score=34.10 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=31.0
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+..++..+.+..+.++.+|++++.+++| |+..|
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~G----G~~~W 94 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDG----GTSAW 94 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCC----CHHHh
Confidence 45678888888776666666679999999999999 66544
No 76
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=78.70 E-value=0.57 Score=44.33 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=38.7
Q ss_pred hcCCCcccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHHh
Q 030741 89 QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138 (172)
Q Consensus 89 ~~~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~~ 138 (172)
+.-+++|+++++..+ ....++|.|...||..+|+++++|+|...-++
T Consensus 618 se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea 664 (725)
T KOG1093|consen 618 SEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEA 664 (725)
T ss_pred hhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHH
Confidence 345678999988765 45789999999999999999999999884443
No 77
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=78.57 E-value=0.39 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+..++..+++..+.++.+|++++.++.| |+..|
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~g----G~~~w 94 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAG----GFEAW 94 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCC----CHHHh
Confidence 35678999998889999999999999999999999 66544
No 78
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=78.21 E-value=2.6 Score=36.56 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=34.8
Q ss_pred cccHHHHHHHhcCCCeEEEEeC---------ChhhhhhCCCCCcEeechhhHH
Q 030741 94 SVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDVR---------~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
.++++.+.+.+.+....|||.- ...||...|||||.++.++.+.
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~ 58 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIIS 58 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccc
Confidence 4677788888777779999973 2347888999999999988774
No 79
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=77.68 E-value=0.37 Score=33.61 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCceecCCCCc-c-ccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQ-D-TTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~-~-~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...|+|.+..++. + +.+.+++|+..|++++..+.| |+..|
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G----G~~~W 90 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG----GLQGW 90 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC----CHHHH
Confidence 3567888888865 3 689999999999999999999 77655
No 80
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=71.38 E-value=0.66 Score=35.65 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=34.9
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecccCC
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKP 71 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p 71 (172)
..++|.+..++..+++.++.|+..|++++.++.| |+..|..++.|
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~G----G~~aW~~~g~p 93 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAALTVKPVFVLEG----GTAAWIAAGLP 93 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecC----cHHHHHHCCCC
Confidence 3457777777888888889999999999999999 66666554443
No 81
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=71.03 E-value=0.66 Score=32.00 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=31.7
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+..++..++++..+|+..|+ ++.+++| |+..|
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~G----G~~~w 88 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDG----GYKTY 88 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecC----CHHHh
Confidence 34688888888888888889999999 8999999 76555
No 82
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=68.10 E-value=0.91 Score=32.44 Aligned_cols=42 Identities=7% Similarity=0.020 Sum_probs=34.0
Q ss_pred CCCCCceecCCCCccccceeeeeeecccCe-eeecccccCCceeeee
Q 030741 21 YRSSPLILAPKTNQDTTICCLTVRSFTFSR-RRLSSQSVPRGLIIQN 66 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~r~~g~~~-~~~~~g~~~~GL~~~~ 66 (172)
....++|.+-.++..+.++++.|+..|+++ +..+.| |+..|.
T Consensus 64 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~g----G~~~W~ 106 (109)
T cd01533 64 DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRN----GTQGWT 106 (109)
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecC----CHHHHH
Confidence 345678999888888888899999999987 888899 665553
No 83
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=67.58 E-value=0.86 Score=32.74 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=33.3
Q ss_pred CCCCceecCCCCc--cccceeeeeeecccCeeeecccccCCceeeeeccc
Q 030741 22 RSSPLILAPKTNQ--DTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAAT 69 (172)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~ 69 (172)
...++|.+-.++. .+.+.++.++..|++ +.+++| |+..|..++
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~G----G~~~W~~~g 107 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIG----GLDWWKREG 107 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecC----CHHHHHHCC
Confidence 3566888877653 688899999999996 889999 777775544
No 84
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=67.53 E-value=0.91 Score=31.61 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQN 66 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~ 66 (172)
++.++|.+-.++..+.+....++..|++ +.++.| |+..|.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~G----G~~~W~ 94 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWE-VYVLEG----GLAAAL 94 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecC----cHHHhc
Confidence 4567888888887666666777999999 999999 776553
No 85
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=64.91 E-value=1 Score=31.66 Aligned_cols=39 Identities=5% Similarity=-0.060 Sum_probs=31.2
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+-.++..+.+.++.++.+|++++.++.| |+..|
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~G----G~~~w 96 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQG----GIDAW 96 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecC----CHHHH
Confidence 4578888888876667777777799999999999 77665
No 86
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=64.76 E-value=0.84 Score=33.82 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=34.0
Q ss_pred CCCCceecCCCCc------cccceeeeeeeccc-----CeeeecccccCCceeeeec
Q 030741 22 RSSPLILAPKTNQ------DTTICCLTVRSFTF-----SRRRLSSQSVPRGLIIQNA 67 (172)
Q Consensus 22 ~~~~~~~~~~~~~------~~~~~~~~~r~~g~-----~~~~~~~g~~~~GL~~~~~ 67 (172)
...++|.+.+++. .+++++|+++.+++ .+|.+|+| |+..|+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~G----G~~~w~~ 126 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKG----GFEQFSS 126 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcc----hHHHHHh
Confidence 4567888877664 58899999999998 68999999 8877754
No 87
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=64.36 E-value=2 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeeccc
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAAT 69 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~ 69 (172)
..++|.+-.++..+.+.+++++.+|++++..+.| |++-|+.+.
T Consensus 64 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~g----G~~~~~~~~ 106 (117)
T cd01522 64 DRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLE----GFEGDLDAA 106 (117)
T ss_pred CCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcC----ceecCCCCC
Confidence 4568888888888888999999999999998999 888887764
No 88
>PLN02160 thiosulfate sulfurtransferase
Probab=64.10 E-value=1.3 Score=33.65 Aligned_cols=49 Identities=6% Similarity=0.122 Sum_probs=40.3
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecccCCCCC
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKS 74 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~p~~s 74 (172)
...++|.+-.++..+.+++..|...|++++.++.| |+..|...+.|-..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~G----G~~~W~~~g~p~~~ 128 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGG----GYLAWVDHSFPINQ 128 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCC----cHHHHhhCCCCccc
Confidence 34579999999998889999999999999999999 77777666655443
No 89
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=57.13 E-value=1.7 Score=30.31 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=33.2
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecc
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAA 68 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~ 68 (172)
..++|.+..++..++.....|+..|+.++.++.| |+..|...
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~g----G~~~W~~~ 95 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEG----GLDAWKAA 95 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeC----CHHHHHHC
Confidence 3468888888877778888899999999999999 77666443
No 90
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=56.86 E-value=8.1 Score=33.67 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=29.5
Q ss_pred cccHHHHHHHhcCCCeEEEEeCChhhhhhCCCCCcEeechhhHH
Q 030741 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLI 137 (172)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDVR~~~Ey~~ghIPgAinIP~~~l~ 137 (172)
.++.+++.+.+..++.+++|.|+ +..||.+|+|+-+-.+.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalm 44 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALM 44 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHH
Confidence 35677777777777899999999 55688888886554443
No 91
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=52.15 E-value=11 Score=33.08 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHhc------CCCeEEEEeCChhhhhhCCCCC
Q 030741 92 VRSVEAKEALRLQK------ENNFVILDVRPEAEFKEAHPPG 127 (172)
Q Consensus 92 ~~~Is~~el~~~l~------~~~~~lIDVR~~~Ey~~ghIPg 127 (172)
...++++++.+++. ..+..+||||++. |+..++|+
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 45789999988763 2368899999988 98888875
No 92
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=50.87 E-value=2.1 Score=30.01 Aligned_cols=40 Identities=5% Similarity=0.040 Sum_probs=29.4
Q ss_pred CCCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 22 RSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
...++|.+-.++.-.....+.|+..|++++..+.| |+..|
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~G----G~~~W 99 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKG----GILKY 99 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeech----hHHHH
Confidence 45578888887764444555678999999999999 65544
No 93
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=45.12 E-value=3.5 Score=30.10 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=33.8
Q ss_pred CCCceecCCCCccccceeeeeeeccc-CeeeecccccCCceeeeeccc
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTF-SRRRLSSQSVPRGLIIQNAAT 69 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~-~~~~~~~g~~~~GL~~~~~~~ 69 (172)
..++|.+..++..+.....+++..|+ +++..+.| |+..|....
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~G----G~~~W~~~~ 115 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIG----GLKAWADKV 115 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccceeeecc----hHHHHHHHh
Confidence 45688888887766677778999999 78999999 777775443
No 94
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=39.61 E-value=5.3 Score=29.45 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCCceecCC-CCccccceeeeeeec------------ccCeeeeccc
Q 030741 23 SSPLILAPK-TNQDTTICCLTVRSF------------TFSRRRLSSQ 56 (172)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~r~~------------g~~~~~~~~g 56 (172)
.-++|++-. ++.-+.++.+.|+.+ |+.+|.+|.|
T Consensus 68 ~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~G 114 (121)
T cd01530 68 RRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEG 114 (121)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcC
Confidence 456888886 777788888888885 9999999999
No 95
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=39.44 E-value=17 Score=34.02 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=31.1
Q ss_pred cccHHHHHHH--hcCC--CeEEEEeCChhhhhhCCCCCcEeechhhH
Q 030741 94 SVEAKEALRL--QKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRL 136 (172)
Q Consensus 94 ~Is~~el~~~--l~~~--~~~lIDVR~~~Ey~~ghIPgAinIP~~~l 136 (172)
.|+..|+.+. +..+ ...|||.|+.++|..||+-.|.|+.-.-+
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lm 354 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLM 354 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHH
Confidence 4666666542 1222 36799999999999999999999875433
No 96
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=38.75 E-value=22 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=11.6
Q ss_pred hCCCCCcEe-------echhhHHh
Q 030741 122 EAHPPGAIN-------VQIYRLIK 138 (172)
Q Consensus 122 ~ghIPgAin-------IP~~~l~~ 138 (172)
.|+.||-.| +|++++.+
T Consensus 348 AGRMPGHMNVLLAEA~VPYd~v~e 371 (462)
T PRK09444 348 AGRLPGHMNVLLAEAKVPYDIVLE 371 (462)
T ss_pred cccCCCcceeEEeecCCCHHHHHh
Confidence 588888776 56665543
No 97
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.77 E-value=5.7 Score=28.14 Aligned_cols=43 Identities=7% Similarity=-0.010 Sum_probs=30.7
Q ss_pred CCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecccC
Q 030741 24 SPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATK 70 (172)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~~~ 70 (172)
.++|.+-.++..+.+.-..|+..|++++.++.| |+..|.....
T Consensus 59 ~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~G----G~~~w~~~~~ 101 (108)
T PRK00162 59 TPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDG----GFEAWRRTFP 101 (108)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHCCchheEEecC----CHHHHHhcCC
Confidence 346666666664455555788999999999999 7777765543
No 98
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=32.09 E-value=51 Score=25.25 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=21.4
Q ss_pred cCCCcccHHHHHHHhcCCCeEEEEeCChhhhhhC---CCCCc--Eeechh
Q 030741 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGA--INVQIY 134 (172)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDVR~~~Ey~~g---hIPgA--inIP~~ 134 (172)
+.+..+++++...+.+-+=..|||.|++.|.... .++|. +|+|+.
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~ 74 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIF 74 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccc
Confidence 3456688888776654333589999999997642 34454 455543
No 99
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=31.43 E-value=9.1 Score=34.12 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=36.0
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeeeecc
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAA 68 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~~~~ 68 (172)
..++|.+-.++..+.+.++.|+..|++++..+.| |+..|...
T Consensus 343 d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~G----G~~~W~~~ 384 (392)
T PRK07878 343 DRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQG----GVVAWAKQ 384 (392)
T ss_pred CCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecC----cHHHHHHh
Confidence 4568889988888899999999999999999999 87777544
No 100
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.30 E-value=8.3 Score=33.94 Aligned_cols=39 Identities=3% Similarity=-0.026 Sum_probs=33.1
Q ss_pred CCCceecCCCCccccceeeeeeecccCeeeecccccCCceeee
Q 030741 23 SSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQ 65 (172)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~~~~g~~~~GL~~~ 65 (172)
..++|.+-.++..+.+++++|+..|++++..+.| |+..|
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~G----Gi~~W 352 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDG----GIEGW 352 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecC----cHHHH
Confidence 3467888888888889999999999999999999 77655
No 101
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=29.76 E-value=48 Score=24.29 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCC-eEEEEeCC
Q 030741 97 AKEALRLQKENN-FVILDVRP 116 (172)
Q Consensus 97 ~~el~~~l~~~~-~~lIDVR~ 116 (172)
.+++.+.+...+ -+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 456666665445 48999996
No 102
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=23.34 E-value=59 Score=29.65 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=7.1
Q ss_pred hhCCCCCcEe
Q 030741 121 KEAHPPGAIN 130 (172)
Q Consensus 121 ~~ghIPgAin 130 (172)
..|+.||-.|
T Consensus 349 VAGRmPGHMN 358 (463)
T COG1282 349 VAGRMPGHMN 358 (463)
T ss_pred cccCCCcchh
Confidence 3588888765
No 103
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=21.37 E-value=1e+02 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=19.8
Q ss_pred CcccHHHHHHHhcCCCeEEEEeCChhhh
Q 030741 93 RSVEAKEALRLQKENNFVILDVRPEAEF 120 (172)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDVR~~~Ey 120 (172)
..++++++..+.+-+=..|||.|+..|-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 3578888877654444589999987663
Done!