Query 030744
Match_columns 172
No_of_seqs 118 out of 632
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxp_A Transcription initiatio 88.7 0.38 1.3E-05 35.2 3.7 98 45-144 50-148 (156)
2 2dna_A Unnamed protein product 56.6 6.9 0.00024 24.5 2.2 26 13-38 33-60 (67)
3 2j49_A Transcription initiatio 55.8 0.51 1.7E-05 34.4 -3.7 46 46-94 34-79 (148)
4 3iko_C Nucleoporin NUP84; NPC, 55.5 12 0.00042 31.9 4.4 31 6-36 173-203 (460)
5 2j4b_A TAF5, transcription ini 55.1 19 0.00065 25.5 4.7 47 45-94 31-77 (138)
6 3ej9_B Beta-subunit of trans-3 54.3 14 0.00048 23.3 3.3 27 110-136 11-37 (70)
7 3sxm_A Transcriptional regulat 53.1 21 0.00071 24.1 4.6 33 7-39 96-128 (140)
8 4a18_Q RPL36, 60S ribosomal pr 52.6 17 0.00059 24.7 3.9 45 49-93 51-98 (104)
9 3mkr_B Coatomer subunit alpha; 49.3 1E+02 0.0036 24.9 9.3 35 2-36 6-42 (320)
10 1whc_A RSGI RUH-027, UBA/UBX 3 48.0 19 0.00066 21.9 3.3 25 14-38 23-50 (64)
11 2vxg_A LD41624, GE-1, CG6181-P 47.5 19 0.00065 25.7 3.7 27 13-39 3-30 (139)
12 3izc_k 60S ribosomal protein R 46.9 9 0.00031 25.9 1.7 42 52-93 53-94 (100)
13 3m20_A 4-oxalocrotonate tautom 43.2 27 0.00092 20.6 3.4 26 110-135 10-35 (62)
14 2cp9_A EF-TS, EF-TSMT, elongat 41.6 16 0.00053 22.6 2.1 15 23-37 35-49 (64)
15 1gyx_A YDCE, B1461, hypothetic 41.2 29 0.00098 21.4 3.4 26 110-135 12-37 (76)
16 2vgx_A Chaperone SYCD; alterna 40.7 81 0.0028 21.2 6.4 54 16-77 27-83 (148)
17 2bwb_A Ubiquitin-like protein 40.7 28 0.00097 19.7 3.0 22 13-34 21-44 (46)
18 2wpv_A GET4, UPF0363 protein Y 39.8 99 0.0034 24.8 7.3 62 12-73 15-77 (312)
19 3sjr_A Uncharacterized protein 39.6 1E+02 0.0034 22.6 6.4 58 37-95 105-163 (175)
20 3ma5_A Tetratricopeptide repea 39.5 67 0.0023 19.9 6.2 72 18-94 15-88 (100)
21 3ry0_A Putative tautomerase; o 38.8 33 0.0011 20.3 3.3 26 110-135 11-36 (65)
22 3lpz_A GET4 (YOR164C homolog); 38.2 1.6E+02 0.0055 23.9 8.7 79 14-93 39-146 (336)
23 2knz_A Ubiquilin-4; cytoplasm, 37.1 32 0.0011 20.1 2.9 24 13-36 25-50 (53)
24 1otf_A 4-oxalocrotonate tautom 37.1 36 0.0012 19.5 3.3 25 111-135 12-36 (62)
25 1wr1_B Ubiquitin-like protein 36.4 29 0.00098 20.8 2.7 23 13-35 31-55 (58)
26 2x4k_A 4-oxalocrotonate tautom 36.0 37 0.0013 19.3 3.2 24 111-134 15-38 (63)
27 2xcb_A PCRH, regulatory protei 35.7 85 0.0029 20.6 5.5 54 16-77 24-80 (142)
28 3mb2_B 4-oxalocrotonate tautom 34.6 45 0.0015 21.0 3.4 26 110-135 13-38 (72)
29 2opa_A Probable tautomerase YW 34.3 44 0.0015 19.1 3.3 24 111-134 12-35 (61)
30 1vek_A UBP14, ubiquitin-specif 33.9 40 0.0014 21.7 3.3 25 14-38 43-70 (84)
31 1wgn_A UBAP1, ubiquitin associ 33.8 82 0.0028 19.3 4.4 23 14-36 33-57 (63)
32 3m21_A Probable tautomerase HP 33.6 47 0.0016 19.7 3.5 27 109-135 13-39 (67)
33 2jy5_A Ubiquilin-1; UBA, alter 32.2 45 0.0015 19.3 3.0 21 14-34 27-49 (52)
34 1vej_A Riken cDNA 4931431F19; 31.2 37 0.0013 21.5 2.7 24 13-36 43-68 (74)
35 3ej9_A Alpha-subunit of trans- 30.8 50 0.0017 20.3 3.3 26 110-135 12-37 (76)
36 3mv2_A Coatomer subunit alpha; 30.5 61 0.0021 26.4 4.5 41 15-62 33-73 (325)
37 3r8n_T 30S ribosomal protein S 30.2 57 0.002 21.2 3.6 28 15-42 31-58 (85)
38 3op1_A Macrolide-efflux protei 29.6 24 0.00082 28.5 2.0 23 15-37 168-190 (308)
39 3abf_A 4-oxalocrotonate tautom 29.5 68 0.0023 18.4 3.7 26 110-135 12-37 (64)
40 3mb2_A 4-oxalocrotonate tautom 29.4 55 0.0019 19.7 3.3 26 110-135 12-37 (72)
41 3mf7_A CIS-3-chloroacrylic aci 29.2 57 0.002 23.2 3.8 27 108-134 10-36 (149)
42 2pm7_A Protein WEB1, protein t 27.5 40 0.0014 28.1 3.1 23 14-36 147-169 (399)
43 1ify_A HHR23A, UV excision rep 27.5 37 0.0013 19.4 2.1 24 14-37 22-47 (49)
44 2kc7_A BFR218_protein; tetratr 26.9 1E+02 0.0036 18.3 8.1 60 16-79 6-65 (99)
45 3hkz_Y DNA-directed RNA polyme 26.3 36 0.0012 22.5 2.0 35 6-40 39-75 (104)
46 3mlc_A FG41 malonate semialdeh 26.1 54 0.0018 22.8 3.1 26 110-135 11-36 (136)
47 1hw1_A FADR, fatty acid metabo 26.0 66 0.0023 23.9 3.9 26 53-78 193-218 (239)
48 2crn_A Ubash3A protein; compac 25.7 69 0.0024 19.4 3.2 25 14-38 23-50 (64)
49 2wpv_A GET4, UPF0363 protein Y 25.4 2.6E+02 0.0088 22.3 9.1 31 13-43 36-66 (312)
50 2jpq_A UPF0352 protein VP2129; 25.2 1E+02 0.0035 19.9 4.0 25 109-133 48-72 (83)
51 2dak_A Ubiquitin carboxyl-term 25.0 49 0.0017 19.9 2.4 26 14-39 23-50 (63)
52 1z96_A DNA-damage, UBA-domain 24.9 66 0.0022 16.9 2.7 11 23-33 29-39 (40)
53 3upv_A Heat shock protein STI1 24.9 1.3E+02 0.0045 18.8 6.8 57 16-77 10-66 (126)
54 2vqe_T 30S ribosomal protein S 24.4 87 0.003 21.2 3.7 27 16-42 39-65 (106)
55 2x0k_A Riboflavin biosynthesis 24.3 39 0.0013 27.5 2.4 23 15-37 165-187 (338)
56 4ae4_A Ubiquitin-associated pr 24.3 58 0.002 22.4 2.9 24 13-36 89-114 (118)
57 3dwl_G Actin-related protein 2 24.0 11 0.00038 27.4 -0.9 21 59-80 46-66 (152)
58 1u5t_A Appears to BE functiona 23.8 2E+02 0.0069 22.1 6.2 66 66-132 41-109 (233)
59 2dah_A Ubiquilin-3; UBA domain 23.7 48 0.0017 19.4 2.1 23 14-36 24-48 (54)
60 3uq3_A Heat shock protein STI1 23.3 1.8E+02 0.0063 20.2 5.8 58 16-78 145-202 (258)
61 3gw4_A Uncharacterized protein 22.3 1.7E+02 0.0059 19.7 5.3 50 20-77 2-54 (203)
62 3u4t_A TPR repeat-containing p 22.3 2.1E+02 0.0073 20.3 7.2 17 19-35 46-62 (272)
63 3hym_B Cell division cycle pro 22.1 2.3E+02 0.0079 20.6 6.7 58 15-77 27-84 (330)
64 2ekk_A UBA domain from E3 ubiq 21.8 87 0.003 17.4 2.9 22 14-35 23-45 (47)
65 4b4t_Q 26S proteasome regulato 21.7 2.6E+02 0.0089 21.6 6.8 87 1-97 1-105 (434)
66 2dag_A Ubiquitin carboxyl-term 21.7 88 0.003 19.5 3.2 26 14-39 23-51 (74)
67 1wiv_A UBP14, ubiquitin-specif 21.3 98 0.0033 19.2 3.3 24 14-37 43-68 (73)
68 3c1q_A General secretion pathw 21.3 44 0.0015 22.2 1.8 22 16-37 20-42 (123)
69 1wji_A Tudor domain containing 21.2 1.1E+02 0.0037 18.4 3.5 24 14-37 23-48 (63)
70 2xev_A YBGF; tetratricopeptide 20.9 1.6E+02 0.0054 18.2 7.8 59 17-79 9-69 (129)
71 3n4h_A Putative tautomerase; C 20.8 85 0.0029 21.8 3.3 26 109-134 11-36 (148)
72 2cwb_A Chimera of immunoglobul 20.6 79 0.0027 21.5 2.9 24 13-36 80-105 (108)
73 2cpw_A CBL-interacting protein 20.4 91 0.0031 18.8 3.0 23 14-36 33-58 (64)
74 1mww_A Hypothetical protein HI 20.3 70 0.0024 21.5 2.7 25 111-135 11-35 (128)
75 3na8_A Putative dihydrodipicol 20.2 3.2E+02 0.011 21.5 8.4 34 89-123 276-310 (315)
76 2dkl_A Trinucleotide repeat co 20.1 92 0.0031 20.0 3.1 24 14-37 35-60 (85)
77 1z7l_A Ubiquitin-activating en 20.0 3.2E+02 0.011 21.4 7.4 20 25-44 25-44 (276)
No 1
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=88.72 E-value=0.38 Score=35.25 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=67.8
Q ss_pred CcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHHhHhcccCCCCCcchh-cCCHHHHHHHHHHHH
Q 030744 45 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFH-LLSLEYRQHVADNLN 123 (172)
Q Consensus 45 ~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~~-ll~~~~r~~la~~vn 123 (172)
..+.|=+-+.=|++||.+|...+|-.|-.++-..+. +.+.+.++.+.++.--....+.++.. +-+...+-.+.....
T Consensus 50 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~ 127 (156)
T 2nxp_A 50 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY 127 (156)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHH
Confidence 467888999999999999999999999998766664 56778888887554433334555443 334445555666666
Q ss_pred HHHHHhcCCCCchHHHHHHHH
Q 030744 124 RAILAHAERPRYAAMERLIQQ 144 (172)
Q Consensus 124 ~aIL~~~g~~~~s~Le~l~~~ 144 (172)
..++.++.....+.|-.++++
T Consensus 128 ~lL~~fL~~~~~~~ll~Iin~ 148 (156)
T 2nxp_A 128 QLLKRHLQEKQNNQIWNIVQE 148 (156)
T ss_dssp HHHHHHHTTSTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHH
Confidence 666677655566666666653
No 2
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.59 E-value=6.9 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=19.6
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHhcH
Q 030744 13 MRKRILHFAL--EGNALKAIELTEELAQ 38 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~~p 38 (172)
+|....++++ .||++.|++|+-++-+
T Consensus 33 d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 33 NYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4667566665 5899999999987654
No 3
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=55.81 E-value=0.51 Score=34.39 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=34.6
Q ss_pred cceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHHh
Q 030744 46 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (172)
Q Consensus 46 ~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~ 94 (172)
.+.|=+-+.=|++||.+| ..+|-.|-.++-..+. +.+.+.++.+.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhc
Confidence 468888899999999999 9999999887655553 345555655553
No 4
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=55.53 E-value=12 Score=31.91 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=24.8
Q ss_pred hcHHhHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 030744 6 NCLEDMEMRKRILHFALEGNALKAIELTEEL 36 (172)
Q Consensus 6 ~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~ 36 (172)
+..+.-.--+.|..+|++|++++|++||++.
T Consensus 173 D~~~e~~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 173 DKEEDHIFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 3344455567889999999999999999875
No 5
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=55.12 E-value=19 Score=25.47 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=36.0
Q ss_pred CcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHHh
Q 030744 45 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (172)
Q Consensus 45 ~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~ 94 (172)
..+.|=+-+.=|++||.+|...+|-+|-.++-..+. .. .+.++.+.+
T Consensus 31 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~ 77 (138)
T 2j4b_A 31 LPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFES 77 (138)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhc
Confidence 357888999999999999999999999987766654 23 566666553
No 6
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=54.28 E-value=14 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCch
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRYA 136 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~s 136 (172)
.+.+++.+|...|..++.+++|.|+++
T Consensus 11 RT~EQK~~lI~~VT~a~~eslgap~es 37 (70)
T 3ej9_B 11 LSVARKQQLIRDVIDVTNKSIGSDPKI 37 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 467899999999999999999998754
No 7
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=53.09 E-value=21 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.6
Q ss_pred cHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHH
Q 030744 7 CLEDMEMRKRILHFALEGNALKAIELTEELAQD 39 (172)
Q Consensus 7 ~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ 39 (172)
...++..=..|.++|.+||.+.|.+.+..|.-.
T Consensus 96 ~~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~~ 128 (140)
T 3sxm_A 96 YVVSNREHKELIERIISGDKEGAIEKLKEHLKN 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566677888888888888888888777543
No 8
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=52.59 E-value=17 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=31.8
Q ss_pred ehhhHHHHHHHHhhcC---hHHHHHHHHhhccCcCCchhhHHHHHHHH
Q 030744 49 FDLLSLHFVELVCSRK---CTEALEFAQTKLTPFGKVQKYVEKLEDFM 93 (172)
Q Consensus 49 F~L~~q~fIELir~~~---~~eAi~~ar~~l~~~~~~~~~~~~l~~~~ 93 (172)
|-=+..+-+||++.+. --.|++|+++.+..+..-....++++.+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl 98 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAV 98 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4445678999999999 79999999999887652122334444443
No 9
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.28 E-value=1e+02 Score=24.93 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.4
Q ss_pred CCchhcHHhHHHH--HHHHHHHHcCCHHHHHHHHHHh
Q 030744 2 KQPANCLEDMEMR--KRILHFALEGNALKAIELTEEL 36 (172)
Q Consensus 2 ~~~~~~~~~~~~R--~~I~~~I~~G~i~~Ai~~i~~~ 36 (172)
|.|.......=.| ...-++|..|+++.|+.++++.
T Consensus 6 p~~g~~~~~~W~~nS~laadhvaAGsFe~A~~lLnrQ 42 (320)
T 3mkr_B 6 PTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQ 42 (320)
T ss_dssp CCCCCCHHHHHHHHCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCcHHHHHHccCHHHHHHHHHHH
Confidence 3444444443333 4578999999999999999986
No 10
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.96 E-value=19 Score=21.93 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=19.0
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHhcH
Q 030744 14 RKRILHFAL---EGNALKAIELTEELAQ 38 (172)
Q Consensus 14 R~~I~~~I~---~G~i~~Ai~~i~~~~p 38 (172)
|...+.+++ +|+++.|++|+-++.+
T Consensus 23 ~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 23 RGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 556666665 5789999999987754
No 11
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=47.55 E-value=19 Score=25.66 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHHhcHH
Q 030744 13 MRKRILHFALEGNALKAI-ELTEELAQD 39 (172)
Q Consensus 13 ~R~~I~~~I~~G~i~~Ai-~~i~~~~p~ 39 (172)
-|.+|.++|.+|++++|. .|+....-.
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~aL~ssd~~ 30 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQALLANDLG 30 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhCcHH
Confidence 467799999999999995 555554433
No 12
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=46.88 E-value=9 Score=25.91 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHH
Q 030744 52 LSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFM 93 (172)
Q Consensus 52 ~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~ 93 (172)
+..+-+||++.++--.|++|+++.+..+..-....++++.+.
T Consensus 53 YErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl 94 (100)
T 3izc_k 53 YERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNII 94 (100)
T ss_dssp SCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999887764234455555554
No 13
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=43.21 E-value=27 Score=20.57 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.++..+|+..|..++-..+|.|+.
T Consensus 10 rt~eqK~~L~~~it~~~~~~lg~~~~ 35 (62)
T 3m20_A 10 LDVGKKREFVERLTSVAAEIYGMDRS 35 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 46789999999999999999999864
No 14
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=41.62 E-value=16 Score=22.65 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHhc
Q 030744 23 EGNALKAIELTEELA 37 (172)
Q Consensus 23 ~G~i~~Ai~~i~~~~ 37 (172)
+||++.|++|++...
T Consensus 35 ~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 35 GGDLKQAEIWLHKEA 49 (64)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999998653
No 15
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=41.16 E-value=29 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
++.+++.+++..|..++-..+|.|+.
T Consensus 12 ls~eqk~~L~~~l~~~l~~~lgip~~ 37 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHLNSKDS 37 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 47899999999999999999999863
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=40.74 E-value=81 Score=21.20 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=32.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCC---cceehhhHHHHHHHHhhcChHHHHHHHHhhcc
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLEKNK---DLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~---~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~ 77 (172)
.-..+...|++++|++.++.. +..++ ...+.+ =.-+...|+.++|+++.++-+.
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~l----g~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQAL----CVLDHYDSRFFLGL----GACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHH----HHcCcccHHHHHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 345677889999999887642 22222 222221 1123456788888888776554
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=40.71 E-value=28 Score=19.72 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=14.7
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHH
Q 030744 13 MRKRILHFAL--EGNALKAIELTE 34 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~ 34 (172)
+|..++.++. .||++.|++|+-
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3555555544 488999998873
No 18
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=39.78 E-value=99 Score=24.81 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCC-cceehhhHHHHHHHHhhcChHHHHHHHH
Q 030744 12 EMRKRILHFALEGNALKAIELTEELAQDLLEKNK-DLHFDLLSLHFVELVCSRKCTEALEFAQ 73 (172)
Q Consensus 12 ~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~-~l~F~L~~q~fIELir~~~~~eAi~~ar 73 (172)
+...+++..|.+|++-+|...++..+-+....+. +-.-.|..+--..+++.|....|.+.|.
T Consensus 15 r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 15 KTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 4466888888899999988888888777766643 1112222333333444455555555444
No 19
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=39.59 E-value=1e+02 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=39.8
Q ss_pred cHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCC-chhhHHHHHHHHhH
Q 030744 37 AQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMAL 95 (172)
Q Consensus 37 ~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~-~~~~~~~l~~~~~L 95 (172)
|+.--+.|+++.+.=....|+++|+ |-++.-.+-|+..|.-+.- +...-..+..+..|
T Consensus 105 F~~yq~qhPd~~~ee~L~~Fm~lIg-GGiEqGF~EArdIL~GL~VleG~IA~~IdkTY~L 163 (175)
T 3sjr_A 105 MELYRQQHPDWTAPAIRQAFAPLAR-AGLERGYQEACQVLRQLNVYTPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHTCSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHhHHHHHHHHhhccccCcHHHHhHHHHHHH
Confidence 4444457899999999999999999 4566667777777666542 44555555555443
No 20
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=39.48 E-value=67 Score=19.86 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=40.3
Q ss_pred HHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcC--CchhhHHHHHHHHh
Q 030744 18 LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG--KVQKYVEKLEDFMA 94 (172)
Q Consensus 18 ~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~--~~~~~~~~l~~~~~ 94 (172)
.-....|+++.|++.+++.- .+...+....+.| =.-+...|+.++|+++.++-+.-.. .+.....++..++.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELV-ETDPDYVGTYYHL----GKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 34567899999999886532 1111122222222 1223466899999998887654322 13344555555554
No 21
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=38.83 E-value=33 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.+++.+|++.|..++...+|.|+.
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 47899999999999999999999864
No 22
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.23 E-value=1.6e+02 Score=23.92 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcC----------------------------h
Q 030744 14 RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRK----------------------------C 65 (172)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~----------------------------~ 65 (172)
|...-+.+.++++++|++++-+-.-.+++.+-.-.=-=.+..+||-..+.. +
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi 118 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFV 118 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q ss_pred HHHHHHHHhhccCcCC-chhhHHHHHHHH
Q 030744 66 TEALEFAQTKLTPFGK-VQKYVEKLEDFM 93 (172)
Q Consensus 66 ~eAi~~ar~~l~~~~~-~~~~~~~l~~~~ 93 (172)
.+||+|..+ ..++.. +|++...+...+
T Consensus 119 ~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~ 146 (336)
T 3lpz_A 119 KEMIDWSKK-FGDYPAGDPELHHVVGTLY 146 (336)
T ss_dssp HHHHHHHHH-HSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhh-cCCCCCCCHHHHHHHHHHH
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=37.08 E-value=32 Score=20.05 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=16.6
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 13 MRKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
+|...+.++. .||++.|++|+-.+
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3555555554 47899999998664
No 24
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=37.06 E-value=36 Score=19.48 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 111 SLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 111 ~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
+.+++.+++..|..++-..+|.|+.
T Consensus 12 s~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 12 TDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 6789999999999999999999763
No 25
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=36.38 E-value=29 Score=20.85 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=16.0
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHH
Q 030744 13 MRKRILHFAL--EGNALKAIELTEE 35 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~ 35 (172)
+|...+.++. .||++.|++|+-.
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3656555554 4889999998854
No 26
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=35.97 E-value=37 Score=19.34 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCC
Q 030744 111 SLEYRQHVADNLNRAILAHAERPR 134 (172)
Q Consensus 111 ~~~~r~~la~~vn~aIL~~~g~~~ 134 (172)
+.+++.++++.+..++-..+|.|+
T Consensus 15 s~e~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 15 SDEQLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCc
Confidence 778899999999999999999975
No 27
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=35.75 E-value=85 Score=20.57 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=33.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCC---cceehhhHHHHHHHHhhcChHHHHHHHHhhcc
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLEKNK---DLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~---~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~ 77 (172)
.-..+...|++++|++.+... +..++ ...+.+ =.-+.+.|+.++|+.+.++-+.
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~l----g~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQAL----CMLDHYDARYFLGL----GACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHH----HHhCCccHHHHHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 345677899999999888652 22222 222222 1123467888888888876554
No 28
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=34.58 E-value=45 Score=21.00 Aligned_cols=26 Identities=12% Similarity=-0.026 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.+++.++|+++.++..+.+|.|+.
T Consensus 13 RT~EQKralaeE~T~if~evLGcpPg 38 (72)
T 3mb2_B 13 PDRTRKQAFAAEASAIFQRVIGTPPG 38 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999874
No 29
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.33 E-value=44 Score=19.09 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCC
Q 030744 111 SLEYRQHVADNLNRAILAHAERPR 134 (172)
Q Consensus 111 ~~~~r~~la~~vn~aIL~~~g~~~ 134 (172)
+.+++.+++..|..++-..+|.|+
T Consensus 12 s~eqk~~l~~~i~~~l~~~lg~~~ 35 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVKETTGASE 35 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCc
Confidence 678999999999999999999976
No 30
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.93 E-value=40 Score=21.69 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=19.5
Q ss_pred HHHHHHHHH-c--CCHHHHHHHHHHhcH
Q 030744 14 RKRILHFAL-E--GNALKAIELTEELAQ 38 (172)
Q Consensus 14 R~~I~~~I~-~--G~i~~Ai~~i~~~~p 38 (172)
|.+.+.++. . |+++.|++|+-+|.+
T Consensus 43 ~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 43 QLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 677778855 3 589999999988754
No 31
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.83 E-value=82 Score=19.29 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=16.3
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 14 RKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
+...+.++. .||++.|++||=.|
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 555555554 47899999998554
No 32
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=33.57 E-value=47 Score=19.68 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 109 LLSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 109 ll~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
-.+.++..+++..|..++-..+|.|+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 357789999999999999999999863
No 33
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=32.24 E-value=45 Score=19.30 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q 030744 14 RKRILHFAL--EGNALKAIELTE 34 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~ 34 (172)
|...+.++. .|+++.|++|+-
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554 378999999874
No 34
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.23 E-value=37 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 13 MRKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
+|..++.++. .||++.|++|+-.+
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3667666665 48999999998654
No 35
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=30.84 E-value=50 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.+++.+++..|..++...+|.|+.
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~ 37 (76)
T 3ej9_A 12 RTDEQKRALSAGLLRVISEATGEPRE 37 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 47899999999999999999999864
No 36
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.48 E-value=61 Score=26.42 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhh
Q 030744 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62 (172)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~ 62 (172)
...-++|..|+++.|+.++++.. .-+.|.-.+..|+++...
T Consensus 33 ~laadhvAAGsFetAm~lLnrQv-------Givnf~PLk~~F~~~y~~ 73 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQV-------GVVKLEPLKKYFTNIYEG 73 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHH-------CBCCCGGGHHHHHHHHHH
T ss_pred CcHHHHHHccCHHHHHHHHHHHh-------CccCchhhHHHHHHHHHH
Confidence 45779999999999999999876 467899999999999653
No 37
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=30.15 E-value=57 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcHHHHc
Q 030744 15 KRILHFALEGNALKAIELTEELAQDLLE 42 (172)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~ 42 (172)
+.++.+|..||.+.|.+.+..-+|.|-.
T Consensus 31 Kk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 31 KKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455788889999999998887776544
No 38
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=29.60 E-value=24 Score=28.48 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q 030744 15 KRILHFALEGNALKAIELTEELA 37 (172)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~ 37 (172)
..||++|.+|+++.|-+++-..|
T Consensus 168 T~IR~~L~~G~v~~A~~lLGrpy 190 (308)
T 3op1_A 168 TRIRQAILDGNVKEAGKLLGAPL 190 (308)
T ss_dssp HHHHHHHHHTCHHHHHHHHSSCC
T ss_pred HHHHHHHHcCCHHHHHhhcCcce
Confidence 57999999999999999997665
No 39
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=29.49 E-value=68 Score=18.38 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.++..+++..+..++-..+|.|+.
T Consensus 12 ~s~eqk~~l~~~lt~~l~~~lg~~~~ 37 (64)
T 3abf_A 12 RPPEKKRELVRRLTEMASRLLGEPYE 37 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46788999999999999999999753
No 40
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=29.36 E-value=55 Score=19.71 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.++..+++..|..++-..+|.|+.
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~ 37 (72)
T 3mb2_A 12 RSTEQKAELARALSAAAAAAFDVPLA 37 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 47789999999999999999999863
No 41
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=29.18 E-value=57 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 030744 108 HLLSLEYRQHVADNLNRAILAHAERPR 134 (172)
Q Consensus 108 ~ll~~~~r~~la~~vn~aIL~~~g~~~ 134 (172)
.-++++++..|++.|..++....|.|+
T Consensus 10 ~~~t~eqK~aLa~~It~a~~e~~~vP~ 36 (149)
T 3mf7_A 10 DRLTPSAKHAVAKAITDAHRGLTGTQH 36 (149)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCcCh
Confidence 356789999999999999999999986
No 42
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=27.55 E-value=40 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Q 030744 14 RKRILHFALEGNALKAIELTEEL 36 (172)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~i~~~ 36 (172)
=..|+++|+.||++.|+++|-+.
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Confidence 45689999999999999998543
No 43
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.50 E-value=37 Score=19.38 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhc
Q 030744 14 RKRILHFALE--GNALKAIELTEELA 37 (172)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~i~~~~ 37 (172)
|...+.+++. ||++.|++|+-..-
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 6667777764 68999999986543
No 44
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.89 E-value=1e+02 Score=18.29 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=35.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCc
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 79 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~ 79 (172)
.-...+..|+++.|++.+++. ++.+++-.-..+...=.-+...|+.++|+++.++-+.-.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF----LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677899999999988653 222222111011111222346689999999998766543
No 45
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=26.25 E-value=36 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=29.3
Q ss_pred hcHHhHHHHHHHHHHHHcCC--HHHHHHHHHHhcHHH
Q 030744 6 NCLEDMEMRKRILHFALEGN--ALKAIELTEELAQDL 40 (172)
Q Consensus 6 ~~~~~~~~R~~I~~~I~~G~--i~~Ai~~i~~~~p~l 40 (172)
+|++.+-.+..|++-+++|. |++|..++.+++...
T Consensus 39 qDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~~y 75 (104)
T 3hkz_Y 39 QDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEY 75 (104)
T ss_dssp CCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 56777888999999999996 678999888887654
No 46
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=26.07 E-value=54 Score=22.77 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 110 LSLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 110 l~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
.+.+++..|++.|..++.+.+|.|+.
T Consensus 11 rs~e~k~~L~~~it~al~e~~~vP~~ 36 (136)
T 3mlc_A 11 RSREQRRAIADAVHDALVEVLAIPAR 36 (136)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 57799999999999999999999863
No 47
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=26.03 E-value=66 Score=23.86 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcChHHHHHHHHhhccC
Q 030744 53 SLHFVELVCSRKCTEALEFAQTKLTP 78 (172)
Q Consensus 53 ~q~fIELir~~~~~eAi~~ar~~l~~ 78 (172)
....++.|+.++.+.|-+..+.|+..
T Consensus 193 H~~I~~Ai~~~D~~~A~~~m~~Hl~~ 218 (239)
T 1hw1_A 193 YHKLSALCSEGAHDQVYETVRRYGHE 218 (239)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35567777777777777777777653
No 48
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.65 E-value=69 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHHHHHHHHc-C--CHHHHHHHHHHhcH
Q 030744 14 RKRILHFALE-G--NALKAIELTEELAQ 38 (172)
Q Consensus 14 R~~I~~~I~~-G--~i~~Ai~~i~~~~p 38 (172)
|.+.+.++.. | +++.|++|+-++-+
T Consensus 23 ~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 5566666663 3 79999999988754
No 49
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.38 E-value=2.6e+02 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcHHHHcc
Q 030744 13 MRKRILHFALEGNALKAIELTEELAQDLLEK 43 (172)
Q Consensus 13 ~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~ 43 (172)
.|...-+.+.++++++|++++.+-.-.+++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~ 66 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGALSFLKA 66 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 4777778889999999999997766666654
No 50
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=25.16 E-value=1e+02 Score=19.86 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCC
Q 030744 109 LLSLEYRQHVADNLNRAILAHAERP 133 (172)
Q Consensus 109 ll~~~~r~~la~~vn~aIL~~~g~~ 133 (172)
-+.+++|..+|+.+-.|+..+...+
T Consensus 48 ~V~~~qR~~iAe~Fa~AL~~Svk~~ 72 (83)
T 2jpq_A 48 RVAASQRKLIAEKFAQALMSSLETP 72 (83)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3467899999999999999997664
No 51
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.98 E-value=49 Score=19.85 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhcHH
Q 030744 14 RKRILHFAL--EGNALKAIELTEELAQD 39 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~p~ 39 (172)
|...+.+++ .|+++.|++|+-.+.++
T Consensus 23 ~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 23 RDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 455555554 46899999999887653
No 52
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.94 E-value=66 Score=16.90 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.2
Q ss_pred cCCHHHHHHHH
Q 030744 23 EGNALKAIELT 33 (172)
Q Consensus 23 ~G~i~~Ai~~i 33 (172)
.|+++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 57899999886
No 53
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.87 E-value=1.3e+02 Score=18.77 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=32.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhcc
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~ 77 (172)
.=..+...|+++.|++..++- +..+++- ...+...=.-+.+.|+..+|+.+.++-+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~a----l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEM----IKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH----HHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344567889999998887542 2222211 11222222234466788888888776554
No 54
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=24.36 E-value=87 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHc
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLE 42 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~ 42 (172)
.++.+|..||.+.|.+.+..-++.|-.
T Consensus 39 kv~~Ai~~gdk~~A~~~l~~a~s~iDk 65 (106)
T 2vqe_T 39 KAVQLAQEGKAEEALKIMRKAESLIDK 65 (106)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 355677889999988888887776555
No 55
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=24.29 E-value=39 Score=27.47 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q 030744 15 KRILHFALEGNALKAIELTEELA 37 (172)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~ 37 (172)
..||++|.+|+++.|-+++-..|
T Consensus 165 T~IR~~L~~G~i~~a~~lLGrpy 187 (338)
T 2x0k_A 165 TTVREFLSEGDVARANWALGRHF 187 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSCC
T ss_pred chHHHHHhcCcHHHHHHhcceee
Confidence 45999999999999999996654
No 56
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=24.26 E-value=58 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=18.7
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 13 MRKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
.+..++.+++ +||++.|++|+-..
T Consensus 89 ~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 89 ELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3677888874 47999999998653
No 57
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=23.96 E-value=11 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=10.4
Q ss_pred HHhhcChHHHHHHHHhhccCcC
Q 030744 59 LVCSRKCTEALEFAQTKLTPFG 80 (172)
Q Consensus 59 Lir~~~~~eAi~~ar~~l~~~~ 80 (172)
+++.|+..+|++.+=+. .||.
T Consensus 46 lL~~g~~~~ALk~aL~~-pP~~ 66 (152)
T 3dwl_G 46 AIQTGNALQGLKTLLSY-VPYG 66 (152)
T ss_dssp HHHHSCCHHHHHHHTSS-CCCS
T ss_pred HHHCCCHHHHHHHHHhC-CCCC
Confidence 44455555555555432 4554
No 58
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.84 E-value=2e+02 Score=22.10 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=49.5
Q ss_pred HHHHHHHHhhccCcCCchhhHHHHHHHHhHhcccCCCC-Ccc-hhcCC-HHHHHHHHHHHHHHHHHhcCC
Q 030744 66 TEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEK-SPM-FHLLS-LEYRQHVADNLNRAILAHAER 132 (172)
Q Consensus 66 ~eAi~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~-sp~-~~ll~-~~~r~~la~~vn~aIL~~~g~ 132 (172)
..-.+||++|-.+...||.+..++++.|..|--+ |-. +.- +..+. .+.-.+||-.|-...+.....
T Consensus 41 ~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVD-PLa~s~kg~~~lg~gdfy~eLavqIvEvC~~tr~~ 109 (233)
T 1u5t_A 41 ERLVEFAKKHNSELQASPEFRSKFMHMCSSIGID-PLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDM 109 (233)
T ss_dssp HHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCC-HHHHTTSSGGGTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCC-CCccCCccccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 4557899999888878999999999999988877 322 322 34443 456688999999888888643
No 59
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.74 E-value=48 Score=19.41 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 14 RKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
+...+.++. .||++.|++|+-.+
T Consensus 24 ~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 24 REANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 444445544 58999999999664
No 60
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=23.34 E-value=1.8e+02 Score=20.21 Aligned_cols=58 Identities=10% Similarity=0.003 Sum_probs=32.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccC
Q 030744 16 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTP 78 (172)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~ 78 (172)
.-.-....|+++.|++.+++.. +.++.- .......-.-+.+.|+.++|+.+.++-+.-
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMI----KRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH----hcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3345677899999988886542 222211 111111122234668888888888776553
No 61
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=22.35 E-value=1.7e+02 Score=19.65 Aligned_cols=50 Identities=8% Similarity=-0.247 Sum_probs=23.8
Q ss_pred HHHcCCHHHHHH---HHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhcc
Q 030744 20 FALEGNALKAIE---LTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (172)
Q Consensus 20 ~I~~G~i~~Ai~---~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~ 77 (172)
++..|+++.|.+ ++.. ++.........-=.-....|+..+|+.+.++-+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 467888888888 5522 1212222222222223455777777777776554
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=22.29 E-value=2.1e+02 Score=20.25 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=9.7
Q ss_pred HHHHcCCHHHHHHHHHH
Q 030744 19 HFALEGNALKAIELTEE 35 (172)
Q Consensus 19 ~~I~~G~i~~Ai~~i~~ 35 (172)
-....|+++.|++.+++
T Consensus 46 ~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIET 62 (272)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 34455666666666544
No 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=22.09 E-value=2.3e+02 Score=20.57 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhcc
Q 030744 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (172)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~ 77 (172)
.....+...|+++.|++.+++.. +.++.- .........-+...|+..+|+.+.++.+.
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l----~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVM----EKDPFH-ASCLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH----HHCTTC-TTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-hhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44566778899999998876632 222211 11111122223556777777777776554
No 64
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.79 E-value=87 Score=17.38 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=14.6
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHH
Q 030744 14 RKRILHFAL-EGNALKAIELTEE 35 (172)
Q Consensus 14 R~~I~~~I~-~G~i~~Ai~~i~~ 35 (172)
|...+.++. .|+++.|++|+-.
T Consensus 23 ~~~a~~AL~~~~n~e~A~~~L~~ 45 (47)
T 2ekk_A 23 REHAMEALLNTSTMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHc
Confidence 344444433 5799999999854
No 65
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.74 E-value=2.6e+02 Score=21.64 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=45.1
Q ss_pred CCCchhcHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCC---cceeh-------hh-----HHHHHHHH-hhcC
Q 030744 1 MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNK---DLHFD-------LL-----SLHFVELV-CSRK 64 (172)
Q Consensus 1 ~~~~~~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~---~l~F~-------L~-----~q~fIELi-r~~~ 64 (172)
|-.|...++ .-+.++.+|++++|++...+. ++..+ +.... +. ..++.++. ..|+
T Consensus 1 ~s~p~~~l~------~a~~l~~~~~y~eA~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~ 70 (434)
T 4b4t_Q 1 MSLPGSKLE------EARRLVNEKQYNEAEQVYLSL----LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA 70 (434)
T ss_dssp CCSTTHHHH------HHHHHHHHTCHHHHHHHHHHH----HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHH------HHHHHHHCCCHHHHHHHHHHH----HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 455655444 345678899999999887542 23211 11110 00 11233333 4588
Q ss_pred hHHHHHHHHhhccCcCC--chhhHHHHHHHHhHhc
Q 030744 65 CTEALEFAQTKLTPFGK--VQKYVEKLEDFMALLA 97 (172)
Q Consensus 65 ~~eAi~~ar~~l~~~~~--~~~~~~~l~~~~~LLa 97 (172)
.++|+++-++.+.-+.. +......+...++.+.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (434)
T 4b4t_Q 71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFE 105 (434)
T ss_dssp HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 89998887765443222 1222334444555443
No 66
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.68 E-value=88 Score=19.47 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=18.8
Q ss_pred HHHHHHHHHc--C-CHHHHHHHHHHhcHH
Q 030744 14 RKRILHFALE--G-NALKAIELTEELAQD 39 (172)
Q Consensus 14 R~~I~~~I~~--G-~i~~Ai~~i~~~~p~ 39 (172)
|.+.+.+++. | +++.|++|+-++.++
T Consensus 23 ~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 23 MDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 5666666654 3 699999999887653
No 67
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.34 E-value=98 Score=19.20 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=17.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhc
Q 030744 14 RKRILHFAL--EGNALKAIELTEELA 37 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~ 37 (172)
|...+.+++ .|+++.|++|+-.+.
T Consensus 43 ~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 43 EDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 566666665 478999999996653
No 68
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=21.31 E-value=44 Score=22.25 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=13.4
Q ss_pred HHHHHHHcC-CHHHHHHHHHHhc
Q 030744 16 RILHFALEG-NALKAIELTEELA 37 (172)
Q Consensus 16 ~I~~~I~~G-~i~~Ai~~i~~~~ 37 (172)
.+-.++.+| .+.+|++.+.+..
T Consensus 20 ~La~ll~sGv~l~~aL~~~~~~~ 42 (123)
T 3c1q_A 20 QLATLVQSGMPLEECLRAVAEQS 42 (123)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHc
Confidence 444566666 6777777665543
No 69
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.22 E-value=1.1e+02 Score=18.40 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=15.7
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhc
Q 030744 14 RKRILHFAL--EGNALKAIELTEELA 37 (172)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~ 37 (172)
|...+.++. .|+++.|++|+-.+.
T Consensus 23 ~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 23 KEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 344444444 468999999987664
No 70
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.87 E-value=1.6e+02 Score=18.19 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhcHHHHccCCccee--hhhHHHHHHHHhhcChHHHHHHHHhhccCc
Q 030744 17 ILHFALEGNALKAIELTEELAQDLLEKNKDLHF--DLLSLHFVELVCSRKCTEALEFAQTKLTPF 79 (172)
Q Consensus 17 I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F--~L~~q~fIELir~~~~~eAi~~ar~~l~~~ 79 (172)
-......|+++.|++.++.. +..+++-.+ ......-.-..+.|+..+|+++.++.+...
T Consensus 9 a~~~~~~~~~~~A~~~~~~~----~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSF----LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHH----HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34567899999999888653 232222111 111111222356789999999988766544
No 71
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=20.81 E-value=85 Score=21.76 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 030744 109 LLSLEYRQHVADNLNRAILAHAERPR 134 (172)
Q Consensus 109 ll~~~~r~~la~~vn~aIL~~~g~~~ 134 (172)
-++.+++..+++.+..++...+|.|+
T Consensus 11 ~~s~e~k~~L~~~it~al~~~lg~p~ 36 (148)
T 3n4h_A 11 RISREAKQRIAEAITDAHHELAHAPK 36 (148)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCc
Confidence 35789999999999999999999985
No 72
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=20.58 E-value=79 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=17.7
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030744 13 MRKRILHFAL--EGNALKAIELTEEL 36 (172)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (172)
+|...+.++. .||++.|++++-+.
T Consensus 80 d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 80 DDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4666666665 58999999998654
No 73
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.38 E-value=91 Score=18.79 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=16.5
Q ss_pred HHHHHHHHH--cC-CHHHHHHHHHHh
Q 030744 14 RKRILHFAL--EG-NALKAIELTEEL 36 (172)
Q Consensus 14 R~~I~~~I~--~G-~i~~Ai~~i~~~ 36 (172)
|...+.++. .| +++.|++|+-++
T Consensus 33 ~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 33 RARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 556666665 34 899999999664
No 74
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=20.31 E-value=70 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCc
Q 030744 111 SLEYRQHVADNLNRAILAHAERPRY 135 (172)
Q Consensus 111 ~~~~r~~la~~vn~aIL~~~g~~~~ 135 (172)
+.+++..+++.+..++...+|.|+.
T Consensus 11 s~e~~~~l~~~i~~al~~~lg~p~~ 35 (128)
T 1mww_A 11 LAPRREKLAEVIYNSLHLGLDIPKG 35 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCcChH
Confidence 5688999999999999999999863
No 75
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.19 E-value=3.2e+02 Score=21.51 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=16.1
Q ss_pred HHHHHhHhcccC-CCCCcchhcCCHHHHHHHHHHHH
Q 030744 89 LEDFMALLAYEE-PEKSPMFHLLSLEYRQHVADNLN 123 (172)
Q Consensus 89 l~~~~~LLay~~-~~~sp~~~ll~~~~r~~la~~vn 123 (172)
++.++.++-+.. +-..|+.. ++.+.++++.+.+.
T Consensus 276 ~K~al~~~G~~~g~~R~Pl~~-l~~~~~~~l~~~l~ 310 (315)
T 3na8_A 276 IKAGLGLSGLEVGAPRLPVQA-LDTEGCRYLQGLLE 310 (315)
T ss_dssp HHHHHHHTTCCCCCCCTTSCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCC-CCHHHHHHHHHHHH
Confidence 444444444432 22345433 56666666665543
No 76
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.07 E-value=92 Score=20.05 Aligned_cols=24 Identities=17% Similarity=-0.082 Sum_probs=17.0
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhc
Q 030744 14 RKRILHFALE--GNALKAIELTEELA 37 (172)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~i~~~~ 37 (172)
|...+.++.. |+++.|++|+-.+.
T Consensus 35 ~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 35 REPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 5556666654 57889999987764
No 77
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=20.04 E-value=3.2e+02 Score=21.38 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHhcHHHHccC
Q 030744 25 NALKAIELTEELAQDLLEKN 44 (172)
Q Consensus 25 ~i~~Ai~~i~~~~p~ll~~~ 44 (172)
.++..|.|++..|.++|...
T Consensus 25 ~i~HcI~WAr~lFe~lF~~~ 44 (276)
T 1z7l_A 25 AIEHTLQWARDEFEGLFKQP 44 (276)
T ss_dssp SHHHHHHHHHHHHHHHHTHH
T ss_pred ChhHHHHHHHHHHHHHHcCC
Confidence 57788999999999988863
Done!