BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030747
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BBO|O Chain O, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 135

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 95  GSGSPSFAIAVVLACIVMYDASGV 118
           G GSP + +AVV    ++Y+ SGV
Sbjct: 86  GKGSPEYWVAVVKPGRILYEISGV 109


>pdb|2H2W|A Chain A, Crystal Structure Of Homoserine O-Succinyltransferase (Ec
           2.3.1.46) (Homoserine O-Transsuccinylase) (Hts) (Tm0881)
           From Thermotoga Maritima At 2.52 A Resolution
          Length = 312

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 96  SGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRELLGHT 155
           SG P+  +       VM +   +     +    L  ++    PD   + ++ LR LLG+T
Sbjct: 19  SGLPAVKVLAKEGIFVMTEKRAIH----QDIRPLEILILNLMPDKIKTEIQLLR-LLGNT 73

Query: 156 PLQVRMMLL 164
           PLQV + LL
Sbjct: 74  PLQVNVTLL 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,774,225
Number of Sequences: 62578
Number of extensions: 116685
Number of successful extensions: 232
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 3
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)