BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030747
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
168) GN=yuiD PE=4 SV=1
Length = 158
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%)
Query: 35 NNLPLISAFLAFALAQFLKIFTTWYKEKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQE 94
N PL+S+ A AQ +K+ + ++ D + +GGMPSSHSA V+AL+ + L+
Sbjct: 5 TNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEH 64
Query: 95 GSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEF 136
G S FA++ + A I M+DA+GVR HAG QA ++N++V +F
Sbjct: 65 GLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDF 106
>sp|P0CS12|TYSY_CRYNJ Thymidylate synthase OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=TMP1 PE=1
SV=1
Length = 317
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 4 VITVGDAASFRSGQATSFLDSPPSSSSLFFPNNLPLISA---FLAFALAQFLKIFTTWYK 60
+I VG+ R+G T L +PPS N LPL++ FL +A+ L W+
Sbjct: 30 IINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELL-----WFV 84
Query: 61 EKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLA 108
D+ KML S G +G+ +G+GS F V L
Sbjct: 85 SGCTDA-KMLSSQG---------------VGIWDGNGSKEFLEKVGLG 116
>sp|P0CS13|TYSY_CRYNB Thymidylate synthase OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=TMP1 PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 4 VITVGDAASFRSGQATSFLDSPPSSSSLFFPNNLPLISA---FLAFALAQFLKIFTTWYK 60
+I VG+ R+G T L +PPS N LPL++ FL +A+ L W+
Sbjct: 30 IINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELL-----WFV 84
Query: 61 EKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLA 108
D+ KML S G +G+ +G+GS F V L
Sbjct: 85 SGCTDA-KMLSSQG---------------VGIWDGNGSKEFLEKVGLG 116
>sp|Q3B6F5|RL16_PELLD 50S ribosomal protein L16 OS=Pelodictyon luteolum (strain DSM 273)
GN=rplP PE=3 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 126
VS A + G GSP F +AVV +M++A GV + +A
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEADGVPMEVATEA 117
>sp|B3EGY3|RL16_CHLL2 50S ribosomal protein L16 OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=rplP PE=3 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGV 118
VS A + G GSP F +AVV +M++A GV
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEAEGV 109
>sp|A0A373|RK16_COFAR 50S ribosomal protein L16, chloroplastic OS=Coffea arabica GN=rpl16
PE=3 SV=1
Length = 135
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 126
++A + G GSP + +AVV ++Y+ GV H R+A
Sbjct: 74 ITARPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTEHIARRA 117
>sp|B0JHZ6|RL16_MICAN 50S ribosomal protein L16 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplP PE=3 SV=1
Length = 139
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELL 129
V+ A + G GSP F +AVV +M++ +GV R+A L
Sbjct: 74 VTQRAAETRMGSGKGSPEFWVAVVKPGFIMFEIAGVAEPVAREAMRL 120
>sp|Q57071|PTG3C_STACT PTS system glucose-specific EIICBA component OS=Staphylococcus
carnosus (strain TM300) GN=ptsG PE=1 SV=1
Length = 675
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 66 SKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRL 120
+K M +GG+ + A + AL VAIGL G G AIA + IV+ G+ L
Sbjct: 57 AKMMEGAGGIIFDNLAIIFALGVAIGLASGDGVA--AIAAFVGFIVLNKTMGMFL 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,909,422
Number of Sequences: 539616
Number of extensions: 2246094
Number of successful extensions: 6134
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6122
Number of HSP's gapped (non-prelim): 14
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)