Query 030748
Match_columns 172
No_of_seqs 201 out of 1349
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.8E-31 9.7E-36 183.5 0.9 59 2-60 1-59 (77)
2 1hbx_A SRF, serum response fac 100.0 2.8E-31 9.6E-36 188.8 0.8 60 1-60 10-69 (92)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.9E-31 1.3E-35 190.4 0.7 60 1-60 16-75 (100)
4 1k6o_B SRF, serum response fac 100.0 7.1E-31 2.4E-35 190.1 1.1 60 1-60 9-68 (103)
5 3p57_A Myocyte-specific enhanc 100.0 1.1E-30 3.7E-35 185.1 0.5 59 2-60 1-59 (90)
6 2jee_A YIIU; FTSZ, septum, coi 91.0 1.5 5.1E-05 29.8 7.8 43 71-118 3-45 (81)
7 1dip_A Delta-sleep-inducing pe 88.0 3.3 0.00011 27.6 7.5 29 96-124 18-46 (78)
8 2w6a_A ARF GTPase-activating p 84.2 6.2 0.00021 25.2 8.7 51 70-120 9-61 (63)
9 2yy0_A C-MYC-binding protein; 82.1 3.1 0.0001 25.8 5.0 30 96-125 22-51 (53)
10 1dh3_A Transcription factor CR 81.7 5.1 0.00017 24.9 5.9 36 87-126 13-48 (55)
11 2dgc_A Protein (GCN4); basic d 78.9 6.7 0.00023 25.0 5.9 38 85-126 19-56 (63)
12 2wt7_A Proto-oncogene protein 75.4 9.5 0.00033 24.1 5.9 35 87-125 14-48 (63)
13 2oqq_A Transcription factor HY 75.3 10 0.00035 22.4 5.5 27 98-124 15-41 (42)
14 1t2k_D Cyclic-AMP-dependent tr 74.2 11 0.00037 23.6 5.9 35 87-125 13-47 (61)
15 3nmd_A CGMP dependent protein 74.0 16 0.00055 24.0 7.3 45 76-125 21-65 (72)
16 1jnm_A Proto-oncogene C-JUN; B 72.9 12 0.00041 23.4 5.9 36 86-125 12-47 (62)
17 1a93_B MAX protein, coiled coi 67.2 10 0.00036 21.4 4.0 28 92-119 6-33 (34)
18 2l5g_A GPS2 protein, G protein 65.3 12 0.0004 21.6 4.0 24 98-121 13-36 (38)
19 1gd2_E Transcription factor PA 65.0 23 0.00079 23.0 6.1 42 84-125 17-61 (70)
20 3s9g_A Protein hexim1; cyclin 62.5 29 0.001 24.2 6.5 59 66-125 25-90 (104)
21 1ci6_A Transcription factor AT 62.3 26 0.0009 22.0 5.9 24 101-124 24-47 (63)
22 1gk7_A Vimentin; intermediate 61.3 21 0.00072 20.5 5.7 31 95-125 8-38 (39)
23 1uii_A Geminin; human, DNA rep 58.8 39 0.0013 22.8 6.5 30 95-124 48-77 (83)
24 3mq7_A Bone marrow stromal ant 58.0 49 0.0017 23.7 7.4 34 95-128 73-106 (121)
25 1t6f_A Geminin; coiled-coil, c 57.6 24 0.00083 20.1 4.5 26 95-120 9-34 (37)
26 2oxj_A Hybrid alpha/beta pepti 56.9 13 0.00045 20.9 3.2 21 103-123 4-24 (34)
27 3gp4_A Transcriptional regulat 54.9 57 0.0019 23.5 8.2 55 70-125 59-113 (142)
28 1hjb_A Ccaat/enhancer binding 53.2 39 0.0013 22.8 5.9 22 104-125 40-61 (87)
29 3a7p_A Autophagy protein 16; c 52.0 72 0.0025 23.9 8.5 51 74-124 68-134 (152)
30 3hnw_A Uncharacterized protein 51.5 67 0.0023 23.4 8.5 21 103-123 106-126 (138)
31 1nkp_B MAX protein, MYC proto- 49.5 31 0.0011 22.5 4.8 29 97-125 51-79 (83)
32 1gu4_A CAAT/enhancer binding p 49.2 52 0.0018 21.7 5.9 24 102-125 38-61 (78)
33 3m48_A General control protein 48.0 19 0.00063 20.2 2.8 21 104-124 4-24 (33)
34 1p9i_A Cortexillin I/GCN4 hybr 47.5 18 0.0006 19.4 2.6 20 106-125 5-24 (31)
35 2wvr_A Geminin; DNA replicatio 47.5 55 0.0019 25.7 6.5 31 95-125 117-147 (209)
36 2xus_A Breast cancer metastasi 47.3 46 0.0016 20.2 5.7 34 73-113 12-45 (49)
37 3m9b_A Proteasome-associated A 45.5 40 0.0014 27.3 5.7 27 94-120 69-95 (251)
38 1t2k_D Cyclic-AMP-dependent tr 45.1 52 0.0018 20.2 5.5 29 95-123 31-59 (61)
39 1go4_E MAD1 (mitotic arrest de 45.0 27 0.00093 24.3 4.1 29 97-125 16-44 (100)
40 2aze_A Transcription factor DP 44.8 96 0.0033 23.2 7.6 48 72-121 3-50 (155)
41 1q08_A Zn(II)-responsive regul 44.6 64 0.0022 21.1 6.7 55 70-125 16-71 (99)
42 1kd8_B GABH BLL, GCN4 acid bas 43.9 28 0.00094 19.8 3.2 20 102-121 10-29 (36)
43 2dfs_A Myosin-5A; myosin-V, in 43.8 76 0.0026 30.7 8.3 23 103-125 1019-1041(1080)
44 3c3f_A Alpha/beta peptide with 43.4 29 0.00099 19.4 3.2 20 104-123 5-24 (34)
45 1wlq_A Geminin; coiled-coil; 2 42.9 34 0.0012 23.1 4.1 30 95-124 40-69 (83)
46 2zxx_A Geminin; coiled-coil, c 42.6 32 0.0011 23.0 4.0 30 95-124 36-65 (79)
47 3gpv_A Transcriptional regulat 42.1 94 0.0032 22.4 8.2 95 31-126 18-128 (148)
48 3hnw_A Uncharacterized protein 41.7 98 0.0034 22.4 8.4 25 99-123 109-133 (138)
49 3q4f_C DNA repair protein XRCC 40.8 31 0.0011 26.6 4.1 25 99-123 160-184 (186)
50 2l5g_B Putative uncharacterize 39.9 56 0.0019 19.2 4.9 20 96-115 19-38 (42)
51 2oa5_A Hypothetical protein BQ 39.8 21 0.00072 25.4 2.8 24 102-125 10-33 (110)
52 3w03_C DNA repair protein XRCC 38.7 44 0.0015 25.8 4.7 29 97-125 149-177 (184)
53 1a92_A Delta antigen; leucine 38.4 46 0.0016 20.2 3.8 24 96-119 17-40 (50)
54 1ci6_A Transcription factor AT 38.0 73 0.0025 19.9 5.4 27 97-123 34-60 (63)
55 1am9_A Srebp-1A, protein (ster 37.7 37 0.0013 22.3 3.7 24 102-125 52-75 (82)
56 3oja_B Anopheles plasmodium-re 37.3 1.4E+02 0.0047 25.8 8.4 26 100-125 551-576 (597)
57 3c3g_A Alpha/beta peptide with 35.8 45 0.0015 18.5 3.2 19 105-123 5-23 (33)
58 2v66_B Nuclear distribution pr 35.7 1.1E+02 0.0039 21.5 8.6 52 74-125 6-60 (111)
59 1j1d_B Troponin T, TNT; THIN f 34.2 1.2E+02 0.004 21.2 6.7 51 67-125 38-88 (106)
60 1nkp_A C-MYC, MYC proto-oncoge 34.2 71 0.0024 21.3 4.7 29 98-126 57-85 (88)
61 4h22_A Leucine-rich repeat fli 34.0 85 0.0029 21.9 5.2 21 104-124 62-82 (103)
62 1deb_A APC protein, adenomatou 33.9 55 0.0019 20.0 3.6 20 106-125 9-28 (54)
63 2bni_A General control protein 33.2 47 0.0016 18.6 3.0 20 104-123 5-24 (34)
64 2hy6_A General control protein 30.5 56 0.0019 18.3 3.0 20 104-123 5-24 (34)
65 1go4_E MAD1 (mitotic arrest de 29.2 84 0.0029 21.8 4.5 29 99-127 11-39 (100)
66 1z0k_B FYVE-finger-containing 29.0 1.2E+02 0.0041 19.6 5.1 43 78-120 24-66 (69)
67 1nlw_A MAD protein, MAX dimeri 29.0 1E+02 0.0036 20.1 4.8 26 99-124 53-78 (80)
68 3thf_A Protein shroom; coiled- 28.7 91 0.0031 24.2 5.0 34 88-125 11-44 (190)
69 3mtu_A Tropomyosin alpha-1 cha 28.1 1.2E+02 0.0042 19.5 5.4 35 91-125 7-41 (75)
70 3oja_B Anopheles plasmodium-re 27.8 2.3E+02 0.0079 24.4 8.2 30 96-125 526-555 (597)
71 1j1e_C Troponin I, TNI; THIN f 27.2 2E+02 0.0068 22.0 6.7 32 67-98 54-85 (180)
72 3he5_A Synzip1; heterodimeric 26.8 90 0.0031 18.2 3.6 15 110-124 34-48 (49)
73 3s4r_A Vimentin; alpha-helix, 25.8 1.5E+02 0.0053 19.8 8.0 29 96-124 52-80 (93)
74 1z56_A Ligase interacting fact 25.7 27 0.00091 28.2 1.5 52 9-60 117-168 (246)
75 3oja_A Leucine-rich immune mol 25.5 2.5E+02 0.0084 23.7 7.9 22 103-124 438-459 (487)
76 2jee_A YIIU; FTSZ, septum, coi 25.5 1.5E+02 0.0052 19.7 5.4 22 99-120 40-61 (81)
77 2wg5_A General control protein 25.0 75 0.0026 22.0 3.7 25 96-120 10-34 (109)
78 1lwu_C Fibrinogen gamma chain; 24.3 2.8E+02 0.0097 22.9 7.7 47 74-125 12-58 (323)
79 3v1a_A Computational design, M 24.3 1.2E+02 0.0042 18.2 4.1 40 79-118 6-45 (48)
80 1g6u_A Domain swapped dimer; d 24.1 1.1E+02 0.0039 17.7 4.7 17 69-85 15-31 (48)
81 1uo4_A General control protein 24.1 86 0.0029 17.5 3.0 19 105-123 6-24 (34)
82 1ytz_T Troponin T; muscle, THI 23.3 1.9E+02 0.0066 20.1 7.0 52 67-126 38-89 (107)
83 2zhg_A Redox-sensitive transcr 23.1 1.2E+02 0.0042 22.0 4.7 94 31-124 13-121 (154)
84 3k66_A Beta-amyloid-like prote 21.2 3.2E+02 0.011 21.8 7.7 52 76-127 40-91 (239)
85 3o0z_A RHO-associated protein 20.9 2.7E+02 0.0094 21.0 6.5 14 76-89 8-21 (168)
86 1r8e_A Multidrug-efflux transp 20.6 2.3E+02 0.0079 21.7 6.3 51 70-120 63-113 (278)
87 1j1d_C Troponin I, TNI; THIN f 20.2 2.5E+02 0.0086 20.3 8.1 32 67-98 54-85 (133)
88 2wuj_A Septum site-determining 20.2 86 0.0029 19.1 2.8 13 70-82 19-31 (57)
89 1yzm_A FYVE-finger-containing 20.0 1.6E+02 0.0054 17.9 5.7 42 79-120 7-48 (51)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.96 E-value=2.8e-31 Score=183.48 Aligned_cols=59 Identities=56% Similarity=0.862 Sum_probs=57.8
Q ss_pred CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
||+||+|++|||+.+|++||+|||+||||||+||||||||+|||||||++|++|+|+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~ 59 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999874
No 2
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.96 E-value=2.8e-31 Score=188.79 Aligned_cols=60 Identities=40% Similarity=0.584 Sum_probs=59.4
Q ss_pred CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
|||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~ 69 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999987
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.96 E-value=3.9e-31 Score=190.44 Aligned_cols=60 Identities=45% Similarity=0.698 Sum_probs=59.2
Q ss_pred CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
|||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp 75 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC
Confidence 899999999999999999999999999999999999999999999999999999999986
No 4
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.96 E-value=7.1e-31 Score=190.14 Aligned_cols=60 Identities=40% Similarity=0.584 Sum_probs=59.3
Q ss_pred CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
|||+||+|++|||+.+|++||+|||.||||||+||||||||+|||||||++|++|+|++|
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~ 68 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc
Confidence 999999999999999999999999999999999999999999999999999999999987
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.96 E-value=1.1e-30 Score=185.07 Aligned_cols=59 Identities=56% Similarity=0.862 Sum_probs=58.2
Q ss_pred CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|+||
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~ 59 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.99 E-value=1.5 Score=29.77 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 71 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 118 (172)
Q Consensus 71 ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~ 118 (172)
+|++=|..||..+..++..| .++..+|+.|+.+...|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999887 45556666666666665554444
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=88.03 E-value=3.3 Score=27.57 Aligned_cols=29 Identities=41% Similarity=0.526 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
++++++|.+|..+...|+.||..|+.-.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999999999999986554
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.17 E-value=6.2 Score=25.16 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 70 SCTLEELQQIERQLEKSVSNIRAR--KNQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 70 ~ls~~EL~~LE~~Le~~l~~IR~r--K~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
..++.|...+...|-.+=.+|..- -+.-+.+++..+++++..|+.||..|+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 478899999888887777766542 235667888899999999999999887
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.14 E-value=3.1 Score=25.82 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+.++.+.+.|+.++..|.+++..|+.++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677889999999999999999998874
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.74 E-value=5.1 Score=24.87 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748 87 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 126 (172)
Q Consensus 87 l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~ 126 (172)
-..-|.||...+ +.|..++..|+.||..|..++...
T Consensus 13 A~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 13 ARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665444 588888999999999999888754
No 11
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.85 E-value=6.7 Score=24.99 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748 85 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 126 (172)
Q Consensus 85 ~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~ 126 (172)
.+-.+.|.||.+ .+..|..++..|..+|..|...+...
T Consensus 19 eAArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 19 EAARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666654 44588888888888888888877653
No 12
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.43 E-value=9.5 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 87 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 87 l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
-.+.|.||... ++.|+.++..|..+|..|...+..
T Consensus 14 A~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 14 AAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666443 447788888888888888777654
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.28 E-value=10 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 98 FNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 98 l~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
+.....+|..++.-|+.||..|+..+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 445567888899999999999988764
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.25 E-value=11 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 87 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 87 l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
-.+.|.||... ++.|+.++..|..+|..|..++..
T Consensus 13 A~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 13 ASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433 346667777777777777666653
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.03 E-value=16 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 76 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 76 L~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+..|+..|......||.+. ..|..+.+.+....++.+.|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888777787764 34667788888888888888877754
No 16
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.91 E-value=12 Score=23.44 Aligned_cols=36 Identities=42% Similarity=0.516 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 86 SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 86 ~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+-.+-|.||.+. ++.|..++..|..+|..|...+..
T Consensus 12 AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 12 AASKSRKRKLER----IARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666444 447888888888888888877764
No 17
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.15 E-value=10 Score=21.38 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 92 ARKNQVFNEQIAQLKEKGKVLEAENTRL 119 (172)
Q Consensus 92 ~rK~~ll~~qi~~lkkk~~~L~eeN~~L 119 (172)
.||+.--...|+.++++...|+++-+.|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777777665443
No 18
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=65.28 E-value=12 Score=21.58 Aligned_cols=24 Identities=38% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 98 FNEQIAQLKEKGKVLEAENTRLEE 121 (172)
Q Consensus 98 l~~qi~~lkkk~~~L~eeN~~L~~ 121 (172)
.++||.+|+.+...|++|.-.|--
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999988766643
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.02 E-value=23 Score=23.04 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 84 EKSVSNIRARKNQVF---NEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 84 e~~l~~IR~rK~~ll---~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
..+-...|.||.+.+ ..++..|......+..||..|+..+..
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788887554 346666666666667777777766553
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.55 E-value=29 Score=24.23 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 66 EGLASCTLEELQQ----IERQLEKSV---SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 66 edL~~ls~~EL~~----LE~~Le~~l---~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
|.|.++|-.||.+ ||..++..- .+.|..- .-.-.+|..|..++..|..||..|...-++
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788777764 665555442 1222221 222468889999999999999999876654
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.31 E-value=26 Score=22.02 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 101 QIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 101 qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.++.|..+...|..+|..|..++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666665554
No 22
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=61.26 E-value=21 Score=20.55 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
++-+.+.....=.|++.|+++|..|..++..
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666677899999999999988753
No 23
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.84 E-value=39 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
+.-+.++|+.++..+..++++|..|+.-.+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888876544
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.00 E-value=49 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 128 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~~~ 128 (172)
.+-+..+|..|+.+++.+..|-.+|+...+...|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 4556677778888888777777777777765543
No 25
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=57.61 E-value=24 Score=20.07 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
++.+...|+.-..++..|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555566666777888888888875
No 26
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=56.86 E-value=13 Score=20.87 Aligned_cols=21 Identities=33% Similarity=0.272 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030748 103 AQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 103 ~~lkkk~~~L~eeN~~L~~k~ 123 (172)
+.|..|+..|..+|..|...+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 344445555555555555444
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.88 E-value=57 Score=23.50 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 70 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 70 ~ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
++|++++..+-.....+-..+..+ .+++.++++.+.++...|++....|..++..
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888766554433222222 3466666677777777666666666665553
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.24 E-value=39 Score=22.84 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030748 104 QLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.++.+...|++||..|+.+++.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665554
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.03 E-value=72 Score=23.85 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 74 EELQQIERQLEKSVSNIRARKN---------QVFNE-------QIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 74 ~EL~~LE~~Le~~l~~IR~rK~---------~ll~~-------qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
..+..|+..+...-.+|+.++. +.+.+ +...+..+.+.|++||..|-.++-
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555542 23333 455667888889999977765554
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.51 E-value=67 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030748 103 AQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 103 ~~lkkk~~~L~eeN~~L~~k~ 123 (172)
+.++++...|.+++..|..++
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=49.46 E-value=31 Score=22.54 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 97 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 97 ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.+..++..|+.+...|.++|..|..++..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888888888888865
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=49.22 E-value=52 Score=21.73 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 102 IAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 102 i~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
...++.+...|..||..|+.++..
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777764
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.97 E-value=19 Score=20.17 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030748 104 QLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.|..|+..|..+|..|...+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 445556666666666655544
No 34
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.54 E-value=18 Score=19.43 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 030748 106 KEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 106 kkk~~~L~eeN~~L~~k~~~ 125 (172)
..-...|+.||+.|+.++++
T Consensus 5 nallasleaenkqlkakvee 24 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888887765
No 35
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=47.47 E-value=55 Score=25.70 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
++-|..+|+.++..+..|.++|..|+.-.+.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999999888866653
No 36
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=47.27 E-value=46 Score=20.21 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 73 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLE 113 (172)
Q Consensus 73 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~ 113 (172)
+++|..||.++-. -|.+++.+++..+++++..+.
T Consensus 12 ld~l~~LEkqF~~-------LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 12 VSEMLDLEKQFSE-------LKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4666777755543 356678888887777766553
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.48 E-value=40 Score=27.30 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 94 KNQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 94 K~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
+++.+.+.+..+++++..|++|++.|+
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666666666654
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.11 E-value=52 Score=20.25 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~ 123 (172)
...+..+...|+.++..|.+|+..|+..+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777888888888888887665
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.97 E-value=27 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 97 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 97 ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.++.+|+.|......|.+++..|..+++.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666654
No 40
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.80 E-value=96 Score=23.22 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 72 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 121 (172)
Q Consensus 72 s~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~ 121 (172)
|..|...||..-.....+|+.|+..+- ++..-+.=.+.|-+.|+.+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 678888898888888888887765321 111222336678888877764
No 41
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=44.57 E-value=64 Score=21.13 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 70 SCTLEELQQIERQLEKSVS-NIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 70 ~ls~~EL~~LE~~Le~~l~-~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
++|++|+..+-......-. .. ..-..++.++++.+.++...|+.--..|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999887654332111 11 1224577788888888888888877777776654
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.89 E-value=28 Score=19.79 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030748 102 IAQLKEKGKVLEAENTRLEE 121 (172)
Q Consensus 102 i~~lkkk~~~L~eeN~~L~~ 121 (172)
+++|-.+...|+.|-.+|+.
T Consensus 10 VEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33333344444444444443
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.80 E-value=76 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030748 103 AQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 103 ~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+.|+.++..|++||..|+.++.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677777777766654
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.38 E-value=29 Score=19.43 Aligned_cols=20 Identities=15% Similarity=0.166 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030748 104 QLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~ 123 (172)
.|..|+..|..+|..|...+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 44444555555555554443
No 45
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.95 E-value=34 Score=23.08 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
++-+..+|+.++..+..|.++|..|+.-..
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888889999999988875443
No 46
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=42.64 E-value=32 Score=22.98 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
+.-+..+|+.++..+..|++||..|..-..
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888889999988865443
No 47
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.13 E-value=94 Score=22.36 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=57.1
Q ss_pred hhhhhhcccCCceEEEEecC-CCCcc-ccccc---ccccCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030748 31 KAFELSVLCDAEVAVIIFSP-RGKLS-EFASS---RKLLGEGL-----------ASCTLEELQQIERQLEKSVSNIRARK 94 (172)
Q Consensus 31 Ka~Els~Lc~~~v~~i~~s~-~g~~~-~f~sp---R~l~GedL-----------~~ls~~EL~~LE~~Le~~l~~IR~rK 94 (172)
+..|+|-+||+.+..|.|-. .|-+. ..-++ |.+.-+++ -++|++++..+-.....+-..+.. -
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~-~ 96 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILH-R 96 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHH-H
T ss_pred eHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHH-H
Confidence 57888999998887776653 33321 11111 22211111 267888888876654433222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748 95 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 126 (172)
Q Consensus 95 ~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~ 126 (172)
.+++.++++.+.++...|++....|..++...
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888888888887777654
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.70 E-value=98 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 99 NEQIAQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 99 ~~qi~~lkkk~~~L~eeN~~L~~k~ 123 (172)
..+++.++++...|++++..|...+
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544433
No 49
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=40.80 E-value=31 Score=26.64 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 99 NEQIAQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 99 ~~qi~~lkkk~~~L~eeN~~L~~k~ 123 (172)
..+|..|+.+...|++||.+|....
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788999999999999998654
No 50
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.92 E-value=56 Score=19.16 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030748 96 QVFNEQIAQLKEKGKVLEAE 115 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~ee 115 (172)
..-.++|..++++.+.|++.
T Consensus 19 ~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 19 TMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445677777777777664
No 51
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.79 E-value=21 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 102 IAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 102 i~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+++|..++..|+=||+.|++++..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788899999999999999964
No 52
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.69 E-value=44 Score=25.77 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 97 VFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 97 ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
++.+.+..|+.+...|+++|..|+.....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888876653
No 53
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=38.43 E-value=46 Score=20.18 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRL 119 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L 119 (172)
+-+...+-+.+++.+.|+++|-=|
T Consensus 17 eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHhhhccCCch
Confidence 455556667788888888888544
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.97 E-value=73 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 97 VFNEQIAQLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 97 ll~~qi~~lkkk~~~L~eeN~~L~~k~ 123 (172)
-+..+...|+.++..|+.|+..|+.-+
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666544
No 55
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.72 E-value=37 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 102 IAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 102 i~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
|..|+.++..|.+++..|+..++.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447788888899999999888775
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.35 E-value=1.4e+02 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 100 EQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 100 ~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.+++..+++...+.+|+..+..++..
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555543
No 57
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.83 E-value=45 Score=18.53 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030748 105 LKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 105 lkkk~~~L~eeN~~L~~k~ 123 (172)
|..|+..|..+|..|...+
T Consensus 5 LEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444433
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.70 E-value=1.1e+02 Score=21.48 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 74 EELQQIERQLEKSVSNIRARKNQVFN---EQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 74 ~EL~~LE~~Le~~l~~IR~rK~~ll~---~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.+|...-..|..-+..+|.+=...-. ..|..|++.+..|...|..|..++..
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655433322 25666777777777777777766654
No 59
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=34.20 E-value=1.2e+02 Score=21.18 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 67 GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 67 dL~~ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+++++|.++|..+=..|-..+..+-+-|..+-. ++....-|-..|..++.+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~--------kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQE--------KFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHhhhHHHHHHHHHHHH
Confidence 567899999999988888888888777765432 333333344455555444
No 60
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.16 E-value=71 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748 98 FNEQIAQLKEKGKVLEAENTRLEEKCGME 126 (172)
Q Consensus 98 l~~qi~~lkkk~~~L~eeN~~L~~k~~~~ 126 (172)
+..+...+......|..+|..|..++...
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555666788888888877653
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.02 E-value=85 Score=21.95 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030748 104 QLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.++.....|..+...|+..+.
T Consensus 62 ~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 62 REKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 62
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.93 E-value=55 Score=20.04 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 030748 106 KEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 106 kkk~~~L~eeN~~L~~k~~~ 125 (172)
-+++..|..||..|+..+++
T Consensus 9 ~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHh
Confidence 33445555555555555543
No 63
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.22 E-value=47 Score=18.58 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030748 104 QLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~ 123 (172)
.|..|+..|..+|..|...+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHH
Confidence 33444444444444444433
No 64
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=30.46 E-value=56 Score=18.25 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030748 104 QLKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 104 ~lkkk~~~L~eeN~~L~~k~ 123 (172)
.|..|+..|-.+|..|...+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444554444433
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.16 E-value=84 Score=21.82 Aligned_cols=29 Identities=38% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030748 99 NEQIAQLKEKGKVLEAENTRLEEKCGMEN 127 (172)
Q Consensus 99 ~~qi~~lkkk~~~L~eeN~~L~~k~~~~~ 127 (172)
.+++..+++++..|+.||..|+.+.....
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999888654
No 66
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=29.05 E-value=1.2e+02 Score=19.63 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 78 QIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 78 ~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
.|.+|....-.-|+.-|..--.+++..|+..++.|++|-..+.
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666655556788888888888888877663
No 67
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.01 E-value=1e+02 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 99 NEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 99 ~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.++...+......|..+|..|+.+++
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555666666666666654
No 68
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.74 E-value=91 Score=24.15 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 88 SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 88 ~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
..|+.+|.+++. .|++|+..|+++-..|...+..
T Consensus 11 ~~i~~Kk~ELi~----~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 11 NLIKQKMDELIK----HLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp CHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 457788887775 7777777777777777766654
No 69
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=28.09 E-value=1.2e+02 Score=19.53 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 91 RARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 91 R~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
.++|++.++.+.+.+......++.|...--.++..
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRd 41 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRN 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46777888888888888888888766655555543
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.79 E-value=2.3e+02 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+...++++..+++.+.++++...+..+++.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 334444444445555555555555555543
No 71
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=27.15 E-value=2e+02 Score=22.00 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 67 GLASCTLEELQQIERQLEKSVSNIRARKNQVF 98 (172)
Q Consensus 67 dL~~ls~~EL~~LE~~Le~~l~~IR~rK~~ll 98 (172)
++++++.++|+.+=..|-..+..+-+-|..+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67889999999999999998888888877543
No 72
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.77 E-value=90 Score=18.24 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHh
Q 030748 110 KVLEAENTRLEEKCG 124 (172)
Q Consensus 110 ~~L~eeN~~L~~k~~ 124 (172)
.-|+.|-..|+++++
T Consensus 34 aylekeianlrkkie 48 (49)
T 3he5_A 34 AYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 346677777777765
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.75 E-value=1.5e+02 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.++...|..|++++..+..++..|...+.
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888888777765554
No 74
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=25.70 E-value=27 Score=28.19 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=6.1
Q ss_pred EEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748 9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (172)
Q Consensus 9 k~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp 60 (172)
-.|++...-.+|+.||-.||..|..+|..-.+-+-++=+|--...+|...+.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~~ 168 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDICC 168 (246)
T ss_dssp ------------------------------------------CTTSGGGTTH
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHHH
Confidence 3455555668999999999999999998877777777677766676665543
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.51 E-value=2.5e+02 Score=23.67 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030748 103 AQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 103 ~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
+..+++++.+++||..|+..++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhh
Confidence 3445555555555555555444
No 76
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.46 E-value=1.5e+02 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030748 99 NEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 99 ~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
.++.+.++.....|..+|..|+
T Consensus 40 ~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 40 SQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 3344443333333444444443
No 77
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.95 E-value=75 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
.-++.++..++++...+++|...|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777777665
No 78
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.32 E-value=2.8e+02 Score=22.92 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748 74 EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 125 (172)
Q Consensus 74 ~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~ 125 (172)
+++..||..+...-. ..+.|...++.++.++..|++.-..|..++..
T Consensus 12 ~~~~~~e~~i~~~~~-----~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 12 EEVRILEQIGVSHDA-----QIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555544333222 23445566667777777777766667666553
No 79
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=24.31 E-value=1.2e+02 Score=18.18 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 79 IERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 118 (172)
Q Consensus 79 LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~ 118 (172)
|++|....-.-|+.-|..--.+++..|++.++.|+.|...
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555555544456777888888877777644
No 80
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.10 E-value=1.1e+02 Score=17.73 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 030748 69 ASCTLEELQQIERQLEK 85 (172)
Q Consensus 69 ~~ls~~EL~~LE~~Le~ 85 (172)
+++|.+||..||..|..
T Consensus 15 egfspeelaaleselqa 31 (48)
T 1g6u_A 15 EGFSPEELAALESELQA 31 (48)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35788888888866543
No 81
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.07 E-value=86 Score=17.51 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030748 105 LKEKGKVLEAENTRLEEKC 123 (172)
Q Consensus 105 lkkk~~~L~eeN~~L~~k~ 123 (172)
|..|+..|-.+|..|...+
T Consensus 6 LEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444444444444333
No 82
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=23.30 E-value=1.9e+02 Score=20.08 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748 67 GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 126 (172)
Q Consensus 67 dL~~ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~ 126 (172)
++++++.++|+.+=..|-..+..+-+-|..+- .++....-|-..|..++.+.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE--------~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA--------EQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHhhhhHHHHHHHHHHHh
Confidence 67889999999999888888888777766543 34444444555666665553
No 83
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.06 E-value=1.2e+02 Score=21.96 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=46.0
Q ss_pred hhhhhhcccCCceEEEEecC-CCCccccccc---ccccCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 31 KAFELSVLCDAEVAVIIFSP-RGKLSEFASS---RKLLGEGLA-----------SCTLEELQQIERQLEKSVSNIRARKN 95 (172)
Q Consensus 31 Ka~Els~Lc~~~v~~i~~s~-~g~~~~f~sp---R~l~GedL~-----------~ls~~EL~~LE~~Le~~l~~IR~rK~ 95 (172)
+..|++-++|+.+.-|.|-. .|-+...-++ |.+.-+++. ++|++++..+-..+...-...-..-.
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye~~Gll~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~ 92 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWK 92 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC-----CCCHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCcccCCCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccccCcccHHHHH
Confidence 45777777887766555542 2322110000 222222221 46677666654432211000001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748 96 QVFNEQIAQLKEKGKVLEAENTRLEEKCG 124 (172)
Q Consensus 96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~ 124 (172)
.++.++++.+.++...|+.-...|...+.
T Consensus 93 ~ll~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 93 QLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777777776654
No 84
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=21.20 E-value=3.2e+02 Score=21.81 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030748 76 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 127 (172)
Q Consensus 76 L~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~~ 127 (172)
...+|.+..+..+.-++.=..+-..=++..++.+..|++|+..=+.++.+.+
T Consensus 40 W~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH 91 (239)
T 3k66_A 40 WGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVH 91 (239)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344444444333222222234445566788899999999988888888755
No 85
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.88 E-value=2.7e+02 Score=20.95 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 030748 76 LQQIERQLEKSVSN 89 (172)
Q Consensus 76 L~~LE~~Le~~l~~ 89 (172)
...||.+|+.+-..
T Consensus 8 i~~LekQL~E~n~k 21 (168)
T 3o0z_A 8 LSQLQKQLEEANDL 21 (168)
T ss_dssp --CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544433
No 86
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.62 E-value=2.3e+02 Score=21.71 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 70 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 70 ~ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
++|++++..+-..-...+..+=..+.+.+.++|..|++....|+..-..+.
T Consensus 63 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 63 GTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888877643211122222233334445556666555555555444443
No 87
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.22 E-value=2.5e+02 Score=20.29 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 67 GLASCTLEELQQIERQLEKSVSNIRARKNQVF 98 (172)
Q Consensus 67 dL~~ls~~EL~~LE~~Le~~l~~IR~rK~~ll 98 (172)
++++++.++|+.+=..|-..+..+-+-|..+-
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 68899999999999999888888888776553
No 88
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.16 E-value=86 Score=19.15 Aligned_cols=13 Identities=15% Similarity=0.205 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHH
Q 030748 70 SCTLEELQQIERQ 82 (172)
Q Consensus 70 ~ls~~EL~~LE~~ 82 (172)
+++.+|....-++
T Consensus 19 GY~~~EVD~FLd~ 31 (57)
T 2wuj_A 19 GYDEDEVNEFLAQ 31 (57)
T ss_dssp EEEHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4556665554433
No 89
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=20.02 E-value=1.6e+02 Score=17.88 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748 79 IERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 120 (172)
Q Consensus 79 LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~ 120 (172)
|.+|....-.-|+.-|..--.+++..|+..++.|++|-..+.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555555556788888888888888877664
Done!