Query 030753
Match_columns 172
No_of_seqs 229 out of 1512
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00571 CBS: CBS domain CBS d 99.1 3.4E-11 7.5E-16 76.8 1.7 54 85-140 1-54 (57)
2 cd04603 CBS_pair_KefB_assoc Th 98.9 1.2E-09 2.7E-14 77.9 3.3 84 53-139 27-110 (111)
3 cd04619 CBS_pair_6 The CBS dom 98.8 2.7E-09 5.9E-14 76.3 2.3 87 51-139 25-113 (114)
4 TIGR03520 GldE gliding motilit 98.8 4.1E-09 8.8E-14 93.0 3.8 92 78-169 186-282 (408)
5 cd04600 CBS_pair_HPP_assoc Thi 98.7 1.4E-08 3.1E-13 73.0 3.0 57 81-139 67-123 (124)
6 cd04617 CBS_pair_4 The CBS dom 98.7 1.3E-08 2.8E-13 73.2 2.4 88 52-139 26-117 (118)
7 COG2524 Predicted transcriptio 98.6 1.3E-08 2.7E-13 84.5 2.5 78 79-159 168-246 (294)
8 cd04607 CBS_pair_NTP_transfera 98.6 1.3E-08 2.8E-13 72.3 2.3 56 82-139 57-112 (113)
9 PRK11573 hypothetical protein; 98.6 1.9E-08 4E-13 89.0 3.7 92 78-169 182-282 (413)
10 PRK15094 magnesium/cobalt effl 98.6 3.1E-08 6.8E-13 83.8 4.2 92 78-169 62-160 (292)
11 cd04801 CBS_pair_M50_like This 98.6 2.4E-08 5.2E-13 71.0 3.0 87 52-139 27-113 (114)
12 COG1253 TlyC Hemolysins and re 98.6 4.2E-08 9E-13 87.0 4.7 91 78-168 201-298 (429)
13 cd04615 CBS_pair_2 The CBS dom 98.6 2.1E-08 4.6E-13 70.9 1.9 86 52-139 26-112 (113)
14 cd04596 CBS_pair_DRTGG_assoc T 98.6 2.9E-08 6.2E-13 70.1 2.4 81 52-139 27-107 (108)
15 PRK11543 gutQ D-arabinose 5-ph 98.6 1.8E-08 3.8E-13 85.4 1.6 88 52-141 232-319 (321)
16 cd04635 CBS_pair_22 The CBS do 98.6 4.7E-08 1E-12 70.0 3.1 87 51-139 25-121 (122)
17 cd04620 CBS_pair_7 The CBS dom 98.6 3E-08 6.6E-13 70.4 2.0 86 51-139 26-114 (115)
18 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 4.1E-08 8.8E-13 69.1 2.4 86 52-139 26-113 (114)
19 cd04626 CBS_pair_13 The CBS do 98.5 4.6E-08 9.9E-13 69.1 2.5 85 52-139 26-110 (111)
20 cd04601 CBS_pair_IMPDH This cd 98.5 8.3E-08 1.8E-12 67.3 3.8 82 52-139 27-109 (110)
21 cd04587 CBS_pair_CAP-ED_DUF294 98.5 4.2E-08 9.1E-13 69.2 2.2 55 83-139 58-112 (113)
22 cd04618 CBS_pair_5 The CBS dom 98.5 6.5E-08 1.4E-12 68.3 3.1 45 95-139 52-97 (98)
23 cd04639 CBS_pair_26 The CBS do 98.5 3.3E-08 7.2E-13 69.7 1.5 85 52-139 26-110 (111)
24 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 4.5E-08 9.7E-13 68.5 2.1 81 53-139 28-108 (109)
25 cd04586 CBS_pair_BON_assoc Thi 98.5 4.2E-08 9E-13 72.1 2.0 55 82-139 80-134 (135)
26 cd04624 CBS_pair_11 The CBS do 98.5 4.3E-08 9.3E-13 69.2 1.9 86 52-139 26-111 (112)
27 COG3448 CBS-domain-containing 98.5 6.3E-08 1.4E-12 82.0 3.1 59 79-139 241-299 (382)
28 cd04597 CBS_pair_DRTGG_assoc2 98.5 5.7E-08 1.2E-12 70.3 2.4 55 83-139 58-112 (113)
29 cd04604 CBS_pair_KpsF_GutQ_ass 98.5 4.2E-08 9.2E-13 69.2 1.6 86 52-139 27-113 (114)
30 cd04593 CBS_pair_EriC_assoc_ba 98.5 7.3E-08 1.6E-12 68.6 2.4 85 53-139 27-114 (115)
31 PRK10892 D-arabinose 5-phospha 98.5 5.1E-08 1.1E-12 82.9 1.5 87 51-140 236-323 (326)
32 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 8E-08 1.7E-12 67.4 2.3 86 51-139 25-110 (111)
33 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 7.7E-08 1.7E-12 67.5 2.1 85 52-139 26-110 (111)
34 cd04630 CBS_pair_17 The CBS do 98.5 6.1E-08 1.3E-12 69.0 1.6 85 52-139 26-113 (114)
35 COG2524 Predicted transcriptio 98.5 6E-08 1.3E-12 80.5 1.7 60 80-141 231-290 (294)
36 PRK07107 inosine 5-monophospha 98.5 8.5E-08 1.8E-12 86.8 2.7 91 51-144 129-222 (502)
37 cd04595 CBS_pair_DHH_polyA_Pol 98.4 7.8E-08 1.7E-12 67.8 1.7 83 52-139 27-109 (110)
38 cd04803 CBS_pair_15 The CBS do 98.4 1E-07 2.2E-12 68.3 2.2 57 81-139 65-121 (122)
39 cd04622 CBS_pair_9 The CBS dom 98.4 1.1E-07 2.3E-12 67.1 2.3 54 84-139 59-112 (113)
40 cd04627 CBS_pair_14 The CBS do 98.4 2E-07 4.3E-12 67.3 3.8 51 86-138 71-121 (123)
41 cd04623 CBS_pair_10 The CBS do 98.4 1E-07 2.2E-12 67.0 2.0 85 52-139 26-112 (113)
42 cd04640 CBS_pair_27 The CBS do 98.4 8.7E-08 1.9E-12 69.7 1.4 86 52-139 26-125 (126)
43 cd04621 CBS_pair_8 The CBS dom 98.4 1.3E-07 2.7E-12 70.4 2.2 55 82-139 80-134 (135)
44 cd04606 CBS_pair_Mg_transporte 98.4 1.6E-07 3.5E-12 66.3 2.5 57 82-140 52-108 (109)
45 cd04602 CBS_pair_IMPDH_2 This 98.4 1.5E-07 3.3E-12 67.0 2.4 55 83-139 57-113 (114)
46 cd04614 CBS_pair_1 The CBS dom 98.4 2.3E-07 5E-12 64.9 3.3 55 84-139 41-95 (96)
47 cd04629 CBS_pair_16 The CBS do 98.4 1.3E-07 2.8E-12 66.8 1.9 85 52-139 26-113 (114)
48 cd04643 CBS_pair_30 The CBS do 98.4 1E-07 2.2E-12 67.5 1.3 84 52-139 26-115 (116)
49 cd04610 CBS_pair_ParBc_assoc T 98.4 2E-07 4.3E-12 65.1 2.7 56 82-139 51-106 (107)
50 cd04636 CBS_pair_23 The CBS do 98.4 1.9E-07 4.1E-12 68.4 2.4 53 84-139 79-131 (132)
51 cd04585 CBS_pair_ACT_assoc2 Th 98.4 3E-07 6.6E-12 65.3 3.0 56 82-139 66-121 (122)
52 cd04625 CBS_pair_12 The CBS do 98.4 2.6E-07 5.6E-12 65.2 2.6 55 82-139 57-111 (112)
53 COG3620 Predicted transcriptio 98.3 2E-07 4.3E-12 72.6 2.0 61 81-144 63-123 (187)
54 cd04800 CBS_pair_CAP-ED_DUF294 98.3 2.1E-07 4.5E-12 65.6 1.9 83 53-139 27-110 (111)
55 cd04618 CBS_pair_5 The CBS dom 98.3 5.6E-07 1.2E-11 63.4 4.1 47 94-140 2-49 (98)
56 cd04642 CBS_pair_29 The CBS do 98.3 3.5E-07 7.6E-12 66.4 3.1 51 87-139 75-125 (126)
57 cd04641 CBS_pair_28 The CBS do 98.3 4.2E-07 9.1E-12 65.3 3.5 86 52-139 26-119 (120)
58 cd04608 CBS_pair_PALP_assoc Th 98.3 6.4E-08 1.4E-12 70.9 -0.9 87 52-140 27-123 (124)
59 cd04582 CBS_pair_ABC_OpuCA_ass 98.3 4.4E-07 9.6E-12 63.3 3.4 54 84-139 52-105 (106)
60 cd04599 CBS_pair_GGDEF_assoc2 98.3 3.3E-07 7.2E-12 63.7 2.7 54 82-138 50-103 (105)
61 PRK10892 D-arabinose 5-phospha 98.3 2.4E-07 5.3E-12 78.8 2.3 76 81-156 200-278 (326)
62 cd04588 CBS_pair_CAP-ED_DUF294 98.3 2.8E-07 6E-12 64.8 1.8 55 83-139 55-109 (110)
63 COG4109 Predicted transcriptio 98.3 3.1E-07 6.8E-12 79.3 2.3 86 48-140 219-304 (432)
64 cd04802 CBS_pair_3 The CBS dom 98.3 3.3E-07 7.1E-12 64.6 1.8 56 81-139 56-111 (112)
65 cd04631 CBS_pair_18 The CBS do 98.3 4.8E-07 1E-11 65.0 2.6 56 82-139 69-124 (125)
66 COG4535 CorC Putative Mg2+ and 98.3 1.3E-07 2.8E-12 77.9 -0.6 94 79-172 63-166 (293)
67 cd04590 CBS_pair_CorC_HlyC_ass 98.2 4E-07 8.6E-12 64.1 1.2 84 52-139 26-110 (111)
68 COG3448 CBS-domain-containing 98.2 6.5E-07 1.4E-11 75.9 2.5 89 51-141 277-371 (382)
69 PRK07807 inosine 5-monophospha 98.2 4.9E-07 1.1E-11 81.4 1.6 60 83-144 148-207 (479)
70 PRK11543 gutQ D-arabinose 5-ph 98.2 4.6E-07 9.9E-12 76.8 1.3 57 82-140 196-254 (321)
71 cd04633 CBS_pair_20 The CBS do 98.2 9.9E-07 2.1E-11 63.0 2.8 56 81-139 65-120 (121)
72 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 5.3E-07 1.1E-11 81.2 1.6 61 82-144 145-205 (475)
73 cd04584 CBS_pair_ACT_assoc Thi 98.2 5.1E-07 1.1E-11 64.4 1.1 56 81-139 65-120 (121)
74 PRK01862 putative voltage-gate 98.2 6.6E-07 1.4E-11 81.9 2.1 60 79-140 443-502 (574)
75 PRK01862 putative voltage-gate 98.2 5.5E-07 1.2E-11 82.4 1.6 88 51-140 479-569 (574)
76 COG0517 FOG: CBS domain [Gener 98.2 1.4E-06 3.1E-11 61.6 3.3 53 84-138 63-117 (117)
77 TIGR00393 kpsF KpsF/GutQ famil 98.2 9.5E-07 2.1E-11 72.7 2.7 80 52-133 189-268 (268)
78 PLN02274 inosine-5'-monophosph 98.2 5.7E-07 1.2E-11 81.5 1.4 64 81-144 161-224 (505)
79 cd04614 CBS_pair_1 The CBS dom 98.2 1.9E-06 4.1E-11 60.2 3.7 47 94-140 2-48 (96)
80 cd04637 CBS_pair_24 The CBS do 98.2 1E-06 2.2E-11 63.1 2.3 55 83-139 67-121 (122)
81 TIGR00400 mgtE Mg2+ transporte 98.2 6.9E-07 1.5E-11 79.7 1.6 61 81-143 193-253 (449)
82 PTZ00314 inosine-5'-monophosph 98.2 1.1E-06 2.5E-11 79.4 3.0 64 81-144 157-220 (495)
83 cd04589 CBS_pair_CAP-ED_DUF294 98.1 1.6E-06 3.4E-11 61.1 2.7 56 81-139 55-110 (111)
84 cd04605 CBS_pair_MET2_assoc Th 98.1 1.7E-06 3.6E-11 60.8 2.8 54 84-139 56-109 (110)
85 cd04609 CBS_pair_PALP_assoc2 T 98.1 1E-06 2.2E-11 61.5 1.6 83 52-139 26-109 (110)
86 PRK14869 putative manganese-de 98.1 7.9E-07 1.7E-11 80.8 1.3 59 82-142 67-125 (546)
87 cd04594 CBS_pair_EriC_assoc_ar 98.1 1.8E-06 3.9E-11 60.6 2.8 53 84-139 51-103 (104)
88 TIGR00393 kpsF KpsF/GutQ famil 98.1 9.8E-07 2.1E-11 72.7 1.6 57 82-140 154-211 (268)
89 cd04641 CBS_pair_28 The CBS do 98.1 2.4E-06 5.3E-11 61.3 3.2 47 94-140 2-48 (120)
90 cd04592 CBS_pair_EriC_assoc_eu 98.1 2.6E-06 5.7E-11 63.7 3.5 48 94-141 2-49 (133)
91 COG4536 CorB Putative Mg2+ and 98.1 1.2E-06 2.6E-11 76.2 1.8 92 78-169 195-295 (423)
92 PRK14869 putative manganese-de 98.1 1.9E-06 4E-11 78.4 3.1 59 81-141 244-303 (546)
93 smart00116 CBS Domain in cysta 98.1 3.1E-06 6.7E-11 49.8 3.1 45 95-139 2-46 (49)
94 cd04632 CBS_pair_19 The CBS do 98.1 2.3E-06 5E-11 62.0 2.8 56 82-139 70-127 (128)
95 PRK07807 inosine 5-monophospha 98.1 2.6E-06 5.7E-11 76.8 3.6 59 79-139 85-143 (479)
96 cd02205 CBS_pair The CBS domai 98.1 1.6E-06 3.4E-11 59.7 1.4 53 85-139 60-112 (113)
97 TIGR01137 cysta_beta cystathio 98.1 1.7E-06 3.7E-11 76.6 1.9 59 80-140 332-390 (454)
98 cd04591 CBS_pair_EriC_assoc_eu 98.1 3.9E-06 8.3E-11 59.5 3.4 49 88-139 56-104 (105)
99 cd04608 CBS_pair_PALP_assoc Th 98.0 2.1E-06 4.6E-11 62.7 1.6 63 94-156 3-68 (124)
100 cd04603 CBS_pair_KefB_assoc Th 98.0 7.2E-06 1.6E-10 58.2 4.1 47 94-140 2-48 (111)
101 PRK05567 inosine 5'-monophosph 98.0 3E-06 6.6E-11 76.4 2.5 86 51-142 119-205 (486)
102 cd04619 CBS_pair_6 The CBS dom 98.0 4.5E-06 9.7E-11 59.5 2.9 47 94-140 2-48 (114)
103 cd04600 CBS_pair_HPP_assoc Thi 98.0 6.5E-06 1.4E-10 58.9 3.8 47 94-140 3-49 (124)
104 TIGR01302 IMP_dehydrog inosine 98.0 3.2E-06 6.9E-11 75.6 2.4 60 82-143 142-202 (450)
105 cd04596 CBS_pair_DRTGG_assoc T 98.0 9.1E-06 2E-10 57.1 4.2 48 93-140 2-49 (108)
106 cd04634 CBS_pair_21 The CBS do 98.0 2.4E-06 5.3E-11 63.7 1.3 55 82-139 88-142 (143)
107 COG4109 Predicted transcriptio 98.0 5.8E-06 1.3E-10 71.6 3.7 74 79-155 184-257 (432)
108 cd04643 CBS_pair_30 The CBS do 98.0 5.7E-06 1.2E-10 58.4 3.0 48 94-141 2-49 (116)
109 cd04642 CBS_pair_29 The CBS do 97.9 9.1E-06 2E-10 58.9 3.6 48 94-141 2-49 (126)
110 cd04598 CBS_pair_GGDEF_assoc T 97.9 5.9E-06 1.3E-10 58.7 2.4 57 81-139 59-118 (119)
111 cd04605 CBS_pair_MET2_assoc Th 97.9 1E-05 2.2E-10 56.7 3.5 47 94-140 3-49 (110)
112 cd04639 CBS_pair_26 The CBS do 97.9 1.4E-05 3E-10 56.1 4.0 47 94-140 2-48 (111)
113 COG2905 Predicted signal-trans 97.9 2.7E-06 5.8E-11 77.2 0.4 83 58-143 188-271 (610)
114 cd04638 CBS_pair_25 The CBS do 97.9 5.3E-06 1.2E-10 58.0 1.7 54 83-139 52-105 (106)
115 cd04582 CBS_pair_ABC_OpuCA_ass 97.9 1.3E-05 2.8E-10 55.8 3.7 47 94-140 2-48 (106)
116 cd04613 CBS_pair_SpoIVFB_EriC_ 97.9 1.6E-05 3.4E-10 55.7 4.1 47 94-140 2-48 (114)
117 cd04593 CBS_pair_EriC_assoc_ba 97.9 1.5E-05 3.2E-10 56.6 3.7 47 94-140 2-48 (115)
118 cd04801 CBS_pair_M50_like This 97.9 1E-05 2.2E-10 57.2 2.7 48 94-141 2-50 (114)
119 TIGR01302 IMP_dehydrog inosine 97.8 1.6E-05 3.4E-10 71.1 4.1 56 82-139 79-137 (450)
120 cd04621 CBS_pair_8 The CBS dom 97.8 1.5E-05 3.2E-10 59.2 3.3 49 93-141 1-49 (135)
121 cd04590 CBS_pair_CorC_HlyC_ass 97.8 2E-05 4.3E-10 55.3 3.7 48 94-141 2-50 (111)
122 cd04623 CBS_pair_10 The CBS do 97.8 1.9E-05 4E-10 55.3 3.3 47 94-140 2-48 (113)
123 cd04632 CBS_pair_19 The CBS do 97.8 1.7E-05 3.7E-10 57.3 3.2 46 94-139 2-47 (128)
124 COG2239 MgtE Mg/Co/Ni transpor 97.8 6.6E-06 1.4E-10 73.6 1.1 81 55-142 173-253 (451)
125 cd04803 CBS_pair_15 The CBS do 97.8 1.9E-05 4.1E-10 56.3 3.2 47 94-140 2-48 (122)
126 cd04627 CBS_pair_14 The CBS do 97.8 1.5E-05 3.2E-10 57.4 2.6 47 94-140 2-49 (123)
127 cd04635 CBS_pair_22 The CBS do 97.8 2.5E-05 5.4E-10 55.7 3.8 47 94-140 2-48 (122)
128 cd04583 CBS_pair_ABC_OpuCA_ass 97.8 3.2E-05 6.9E-10 53.8 3.7 47 94-140 3-49 (109)
129 cd04630 CBS_pair_17 The CBS do 97.8 2.3E-05 5E-10 55.5 3.1 47 94-140 2-49 (114)
130 COG2905 Predicted signal-trans 97.7 8E-06 1.7E-10 74.2 0.8 76 80-157 146-224 (610)
131 cd04617 CBS_pair_4 The CBS dom 97.7 2.2E-05 4.8E-10 56.1 3.0 48 94-141 2-49 (118)
132 cd04636 CBS_pair_23 The CBS do 97.7 3E-05 6.4E-10 56.6 3.6 47 94-140 2-48 (132)
133 PRK05567 inosine 5'-monophosph 97.7 3.2E-05 6.9E-10 69.8 4.5 54 84-139 88-141 (486)
134 cd04624 CBS_pair_11 The CBS do 97.7 2.3E-05 5E-10 55.0 2.9 47 94-140 2-48 (112)
135 cd04629 CBS_pair_16 The CBS do 97.7 2.9E-05 6.4E-10 54.5 3.3 46 94-139 2-47 (114)
136 PTZ00314 inosine-5'-monophosph 97.7 2.5E-05 5.3E-10 70.8 3.5 68 84-155 97-167 (495)
137 cd04599 CBS_pair_GGDEF_assoc2 97.7 5.4E-05 1.2E-09 52.4 4.5 46 94-140 2-47 (105)
138 cd04626 CBS_pair_13 The CBS do 97.7 3.7E-05 8.1E-10 54.0 3.5 47 94-140 2-48 (111)
139 TIGR00400 mgtE Mg2+ transporte 97.7 3.6E-05 7.8E-10 68.7 4.2 61 78-140 126-191 (449)
140 cd04640 CBS_pair_27 The CBS do 97.7 3.8E-05 8.2E-10 55.6 3.3 46 94-139 2-47 (126)
141 cd04586 CBS_pair_BON_assoc Thi 97.7 4.2E-05 9E-10 56.0 3.5 47 94-140 3-49 (135)
142 PRK15094 magnesium/cobalt effl 97.7 1.5E-05 3.2E-10 67.5 1.1 57 83-142 133-189 (292)
143 cd04631 CBS_pair_18 The CBS do 97.7 4.1E-05 8.8E-10 54.8 3.2 47 94-140 2-49 (125)
144 cd02205 CBS_pair The CBS domai 97.7 5.3E-05 1.2E-09 51.9 3.7 48 94-141 2-49 (113)
145 cd04594 CBS_pair_EriC_assoc_ar 97.6 6.4E-05 1.4E-09 52.5 4.0 44 96-140 4-47 (104)
146 PRK07107 inosine 5-monophospha 97.6 2.9E-05 6.4E-10 70.4 2.7 71 84-155 95-169 (502)
147 cd04612 CBS_pair_SpoIVFB_EriC_ 97.6 4.8E-05 1E-09 53.1 3.0 47 94-141 2-48 (111)
148 cd04615 CBS_pair_2 The CBS dom 97.6 4.5E-05 9.7E-10 53.6 2.9 46 94-139 2-47 (113)
149 cd04591 CBS_pair_EriC_assoc_eu 97.6 6.4E-05 1.4E-09 53.2 3.5 48 94-141 3-53 (105)
150 cd04601 CBS_pair_IMPDH This cd 97.6 0.0001 2.2E-09 51.4 4.2 47 94-140 3-49 (110)
151 cd04609 CBS_pair_PALP_assoc2 T 97.6 5.4E-05 1.2E-09 52.6 2.9 46 94-140 2-47 (110)
152 cd04584 CBS_pair_ACT_assoc Thi 97.6 7.1E-05 1.5E-09 53.1 3.4 47 94-140 2-48 (121)
153 PLN02274 inosine-5'-monophosph 97.6 5.4E-05 1.2E-09 68.8 3.2 66 86-155 103-171 (505)
154 cd04588 CBS_pair_CAP-ED_DUF294 97.5 6.5E-05 1.4E-09 52.5 2.8 46 94-140 2-47 (110)
155 cd04637 CBS_pair_24 The CBS do 97.5 6.6E-05 1.4E-09 53.6 2.7 45 94-139 2-46 (122)
156 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 6.5E-05 1.4E-09 52.7 2.4 49 93-141 2-50 (114)
157 cd04602 CBS_pair_IMPDH_2 This 97.5 0.00012 2.6E-09 51.9 3.6 46 94-139 3-51 (114)
158 cd04638 CBS_pair_25 The CBS do 97.5 0.00011 2.5E-09 51.1 3.4 46 94-139 2-47 (106)
159 cd04585 CBS_pair_ACT_assoc2 Th 97.5 9.7E-05 2.1E-09 52.1 3.1 47 94-141 2-48 (122)
160 cd04607 CBS_pair_NTP_transfera 97.5 0.00012 2.5E-09 51.7 3.4 46 94-139 3-48 (113)
161 cd04634 CBS_pair_21 The CBS do 97.5 0.0001 2.2E-09 54.9 3.2 46 94-140 2-47 (143)
162 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.00013 2.9E-09 65.8 4.3 58 79-139 84-141 (475)
163 cd04622 CBS_pair_9 The CBS dom 97.4 0.00013 2.8E-09 51.1 3.2 44 94-138 2-45 (113)
164 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00012 2.6E-09 51.1 2.8 47 94-141 2-48 (111)
165 cd04800 CBS_pair_CAP-ED_DUF294 97.4 0.00015 3.3E-09 50.7 3.3 45 94-139 2-46 (111)
166 COG0517 FOG: CBS domain [Gener 97.4 0.00012 2.5E-09 51.6 2.7 56 87-145 3-58 (117)
167 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00015 3.2E-09 50.9 3.2 45 94-139 2-46 (113)
168 cd04633 CBS_pair_20 The CBS do 97.4 0.00015 3.1E-09 51.6 3.1 46 94-140 2-47 (121)
169 cd04595 CBS_pair_DHH_polyA_Pol 97.4 0.00015 3.2E-09 50.8 3.1 46 94-140 3-48 (110)
170 cd04610 CBS_pair_ParBc_assoc T 97.4 0.00028 6E-09 48.9 4.4 45 94-139 3-47 (107)
171 cd04606 CBS_pair_Mg_transporte 97.3 0.00014 3.1E-09 51.0 2.6 43 98-140 2-49 (109)
172 TIGR03520 GldE gliding motilit 97.3 7.4E-05 1.6E-09 66.1 1.2 56 83-141 255-310 (408)
173 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.0002 4.2E-09 50.2 3.0 46 94-140 2-47 (111)
174 TIGR01137 cysta_beta cystathio 97.3 7.2E-05 1.6E-09 66.3 0.6 84 52-140 368-452 (454)
175 cd04598 CBS_pair_GGDEF_assoc T 97.2 0.00022 4.7E-09 50.5 2.4 46 94-140 2-48 (119)
176 cd04802 CBS_pair_3 The CBS dom 97.2 0.00034 7.3E-09 49.0 3.2 46 94-140 2-47 (112)
177 KOG2550 IMP dehydrogenase/GMP 97.2 0.00029 6.3E-09 62.2 3.2 74 69-144 156-230 (503)
178 cd04620 CBS_pair_7 The CBS dom 97.0 0.0006 1.3E-08 48.0 2.8 46 94-140 2-48 (115)
179 TIGR01186 proV glycine betaine 96.9 0.00051 1.1E-08 60.0 2.4 55 84-141 303-357 (363)
180 cd04625 CBS_pair_12 The CBS do 96.9 0.0009 1.9E-08 46.8 3.1 46 94-140 2-47 (112)
181 COG3620 Predicted transcriptio 96.9 0.00041 9E-09 54.3 1.1 59 78-141 125-183 (187)
182 cd04592 CBS_pair_EriC_assoc_eu 96.8 0.0007 1.5E-08 50.5 1.7 32 94-125 87-118 (133)
183 PRK10070 glycine betaine trans 96.7 0.00055 1.2E-08 60.5 1.0 57 84-143 338-394 (400)
184 KOG1764 5'-AMP-activated prote 96.7 0.0012 2.6E-08 58.1 2.7 54 91-144 308-361 (381)
185 KOG1764 5'-AMP-activated prote 95.7 0.009 2E-07 52.6 3.2 48 94-141 238-285 (381)
186 KOG2550 IMP dehydrogenase/GMP 95.6 0.0087 1.9E-07 53.1 2.6 61 94-156 117-180 (503)
187 COG2239 MgtE Mg/Co/Ni transpor 95.6 0.01 2.3E-07 53.3 3.1 60 78-139 127-191 (451)
188 KOG0474 Cl- channel CLC-7 and 95.4 0.012 2.5E-07 54.8 2.8 57 83-141 690-746 (762)
189 PRK11573 hypothetical protein; 95.3 0.013 2.7E-07 52.1 2.8 48 94-141 263-310 (413)
190 COG1253 TlyC Hemolysins and re 94.7 0.025 5.5E-07 50.3 2.9 49 94-142 280-328 (429)
191 KOG0474 Cl- channel CLC-7 and 93.4 0.016 3.6E-07 53.8 -0.8 66 74-141 573-643 (762)
192 COG4536 CorB Putative Mg2+ and 92.2 0.082 1.8E-06 46.6 1.8 58 83-140 265-322 (423)
193 TIGR03415 ABC_choXWV_ATP choli 91.8 0.089 1.9E-06 46.4 1.6 52 84-140 327-378 (382)
194 KOG0476 Cl- channel CLC-2 and 90.7 0.19 4.2E-06 47.8 2.7 59 81-141 586-646 (931)
195 KOG0475 Cl- channel CLC-3 and 89.7 0.22 4.7E-06 46.5 2.2 57 81-140 637-693 (696)
196 COG1125 OpuBA ABC-type proline 87.1 0.48 1E-05 40.2 2.5 39 101-139 269-307 (309)
197 COG4175 ProV ABC-type proline/ 86.2 0.45 9.7E-06 41.5 1.8 51 88-141 332-382 (386)
198 PRK10070 glycine betaine trans 85.7 0.62 1.3E-05 41.3 2.6 58 83-140 274-332 (400)
199 TIGR01186 proV glycine betaine 83.2 1.4 3E-05 38.6 3.6 47 95-141 252-298 (363)
200 COG4535 CorC Putative Mg2+ and 81.5 0.74 1.6E-05 38.5 1.2 87 48-141 98-188 (293)
201 KOG2118 Predicted membrane pro 77.4 1.1 2.3E-05 41.1 1.0 91 79-169 200-301 (498)
202 KOG0475 Cl- channel CLC-3 and 76.2 2.1 4.6E-05 40.2 2.6 53 86-138 546-604 (696)
203 KOG0476 Cl- channel CLC-2 and 58.1 2.9 6.3E-05 40.2 -0.4 76 66-143 784-859 (931)
204 PF14044 NETI: NETI protein 48.2 19 0.00042 23.3 2.3 24 97-122 3-26 (57)
205 PF14827 Cache_3: Sensory doma 45.0 15 0.00033 26.3 1.7 18 118-135 93-110 (116)
206 COG2216 KdpB High-affinity K+ 40.4 30 0.00065 32.3 3.2 39 102-141 413-451 (681)
207 PF13365 Trypsin_2: Trypsin-li 34.1 32 0.0007 23.5 2.0 21 111-131 100-120 (120)
208 PF02743 Cache_1: Cache domain 27.2 47 0.001 21.7 1.8 16 119-134 19-34 (81)
209 PF05198 IF3_N: Translation in 25.2 29 0.00064 23.5 0.5 26 117-142 13-38 (76)
210 COG4175 ProV ABC-type proline/ 23.4 43 0.00094 29.5 1.2 60 81-140 272-331 (386)
211 PF00944 Peptidase_S3: Alphavi 22.6 64 0.0014 24.8 1.9 20 114-133 105-124 (158)
212 PF08275 Toprim_N: DNA primase 20.1 64 0.0014 23.7 1.5 18 118-135 80-97 (128)
No 1
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.09 E-value=3.4e-11 Score=76.76 Aligned_cols=54 Identities=46% Similarity=0.722 Sum_probs=50.8
Q ss_pred ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
|+++|++ ++.++.+++++.++++.|.+++++.+||+|++|+++|++|.+||+++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence 5789999 99999999999999999999999999999989999999999998764
No 2
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.88 E-value=1.2e-09 Score=77.88 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=63.6
Q ss_pred cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753 53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV 132 (172)
+++++..++..|.++.+.+... ........++.++|.. ++.++.+++++.+++++|.+++.+.+||+|++|+++|+|
T Consensus 27 ~~V~d~~~~~~G~v~~~dl~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Gii 103 (111)
T cd04603 27 VVVVDEENKVLGQVTLSDLLEI-GPNDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTI 103 (111)
T ss_pred EEEEcCCCCEEEEEEHHHHHhh-ccccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEE
Confidence 4445544555566655554321 1112233569999988 888999999999999999999999999999889999999
Q ss_pred eccceee
Q 030753 133 SDYDLLA 139 (172)
Q Consensus 133 t~~Dll~ 139 (172)
|.+|+++
T Consensus 104 t~~di~~ 110 (111)
T cd04603 104 YERELLR 110 (111)
T ss_pred EhHHhhc
Confidence 9999875
No 3
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.79 E-value=2.7e-09 Score=76.33 Aligned_cols=87 Identities=13% Similarity=0.263 Sum_probs=67.0
Q ss_pred cccchhhhhccCceeeecCceeccCC--CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l 128 (172)
.++++++..+...+.+....+..... .......+++++|.. ++.++.+++++.++++.|.+++...+||+|++|++
T Consensus 25 ~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~ 102 (114)
T cd04619 25 DLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARP 102 (114)
T ss_pred CEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcE
Confidence 34556665666666665555442211 112344678999988 89999999999999999999999999999977899
Q ss_pred EEEeeccceee
Q 030753 129 VGLVSDYDLLA 139 (172)
Q Consensus 129 vGIVt~~Dll~ 139 (172)
+|+|+.+|+++
T Consensus 103 ~Gvi~~~dl~~ 113 (114)
T cd04619 103 LGVLNARDALK 113 (114)
T ss_pred EEEEEhHhhcc
Confidence 99999999875
No 4
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.78 E-value=4.1e-09 Score=92.97 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC----CCCCCCC
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG----SGRADNS 152 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~----~~~~~~~ 152 (172)
.++.+.+|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++....... ....+..
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~~~~~ 265 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLREPY 265 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHHcCCCe
Confidence 366888999999999899999999999999999999999999999865 79999999999985332111 1223444
Q ss_pred CCcCccchhhhhhhhcc
Q 030753 153 MFPEVDSTWKVYIQRGA 169 (172)
Q Consensus 153 m~~~~~~l~~~l~~i~~ 169 (172)
+.++-.++.+.++++|+
T Consensus 266 ~Vpe~~~l~~ll~~m~~ 282 (408)
T TIGR03520 266 FVPENKKLDDLLRDFQE 282 (408)
T ss_pred EeCCCCcHHHHHHHHHh
Confidence 56666677777776654
No 5
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.67 E-value=1.4e-08 Score=72.95 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=52.2
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.+ ++.++.+++++.+++++|.+++.+.+||+|++|+++|+++..|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 34578999988 8999999999999999999999999999998899999999999875
No 6
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.65 E-value=1.3e-08 Score=73.19 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=63.0
Q ss_pred ccchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---cc
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WK 127 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~ 127 (172)
++++++..+...+.+....+..... .......+++++|...+++.++.+++++.+++++|.++++..+||+|++ |+
T Consensus 26 ~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~ 105 (118)
T cd04617 26 SLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLE 105 (118)
T ss_pred EEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccce
Confidence 3444444444455555444333221 1223456788899732267899999999999999999999999999876 69
Q ss_pred EEEEeeccceee
Q 030753 128 LVGLVSDYDLLA 139 (172)
Q Consensus 128 lvGIVt~~Dll~ 139 (172)
++|+||..|+.+
T Consensus 106 l~Gvit~~~l~~ 117 (118)
T cd04617 106 VIGRITKTNITK 117 (118)
T ss_pred EEEEEEhhheec
Confidence 999999999875
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.65 E-value=1.3e-08 Score=84.51 Aligned_cols=78 Identities=29% Similarity=0.403 Sum_probs=67.7
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC-CCCCCCCCCcCc
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-SGRADNSMFPEV 157 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~-~~~~~~~m~~~~ 157 (172)
.....+|+++|++ +++++.+++++++++.++.+++++..||+|+ ++++|++|..|+..+..... ...++++|.+++
T Consensus 168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~v 244 (294)
T COG2524 168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNV 244 (294)
T ss_pred ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCC
Confidence 3466789999999 9999999999999999999999999999995 59999999999997766544 677888888866
Q ss_pred cc
Q 030753 158 DS 159 (172)
Q Consensus 158 ~~ 159 (172)
.+
T Consensus 245 it 246 (294)
T COG2524 245 IT 246 (294)
T ss_pred ce
Confidence 33
No 8
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=1.3e-08 Score=72.26 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=51.1
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 3468999988 8889999999999999999999999999997899999999999864
No 9
>PRK11573 hypothetical protein; Provisional
Probab=98.64 E-value=1.9e-08 Score=88.99 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=72.5
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--------CCC
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------SGR 148 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--------~~~ 148 (172)
.++.+.+|+++|+|+.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++....... ...
T Consensus 182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~ 261 (413)
T PRK11573 182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA 261 (413)
T ss_pred hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence 367889999999999999999999999999999999999999999865 89999999999985322111 112
Q ss_pred CCCCCCcCccchhhhhhhhcc
Q 030753 149 ADNSMFPEVDSTWKVYIQRGA 169 (172)
Q Consensus 149 ~~~~m~~~~~~l~~~l~~i~~ 169 (172)
.+..++|+-.++.+.|+++|+
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~ 282 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQR 282 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHh
Confidence 344556766677666666643
No 10
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.62 E-value=3.1e-08 Score=83.83 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC------CCCCC
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------SGRAD 150 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~------~~~~~ 150 (172)
..+...+|+++|+++.++.++.++++++++++.+.+++++++||++++ ++++|+|+.+|++....... .....
T Consensus 62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~ 141 (292)
T PRK15094 62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ 141 (292)
T ss_pred hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence 356788999999998889999999999999999999999999999876 78999999999985332111 11222
Q ss_pred CCCCcCccchhhhhhhhcc
Q 030753 151 NSMFPEVDSTWKVYIQRGA 169 (172)
Q Consensus 151 ~~m~~~~~~l~~~l~~i~~ 169 (172)
..+.+.-.++.+.|+.+++
T Consensus 142 ~~~V~e~~~l~~~L~~m~~ 160 (292)
T PRK15094 142 AVVVPESKRVDRMLKEFRS 160 (292)
T ss_pred CcCcCCCCcHHHHHHHHHh
Confidence 3344455566666666543
No 11
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.62 E-value=2.4e-08 Score=70.98 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=63.8
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++..++..|.++...+..... ......++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+
T Consensus 27 ~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gv 105 (114)
T cd04801 27 RFVVVDNEGRYVGIISLADLRAIPT-SQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGL 105 (114)
T ss_pred eEEEEcCCCcEEEEEEHHHHHHHHH-hhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEE
Confidence 3455555555556665555433221 112345788999752246689999999999999999999999999977899999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++.+|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999875
No 12
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.60 E-value=4.2e-08 Score=87.01 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--C----CCCC
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--S----GRAD 150 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--~----~~~~ 150 (172)
..+++.+|+++|+||+++.+++.+.+.+++.+.+.+++++++||++++ +.++|+++.+|++....... . ....
T Consensus 201 ~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~ 280 (429)
T COG1253 201 LDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP 280 (429)
T ss_pred hccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC
Confidence 467889999999999999999999999999999999999999999943 89999999999996544432 1 1225
Q ss_pred CCCCcCccchhhhhhhhc
Q 030753 151 NSMFPEVDSTWKVYIQRG 168 (172)
Q Consensus 151 ~~m~~~~~~l~~~l~~i~ 168 (172)
..++|+...+.+.|+++|
T Consensus 281 ~~~Vpet~~~~~lL~~~r 298 (429)
T COG1253 281 PLFVPETLSLSDLLEEFR 298 (429)
T ss_pred CeEecCCCcHHHHHHHHH
Confidence 555666666666555554
No 13
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.58 E-value=2.1e-08 Score=70.89 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=64.5
Q ss_pred ccchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
.+++++..++..+.+....+..... .......++.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus 26 ~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~G 103 (113)
T cd04615 26 ALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGG 103 (113)
T ss_pred eEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEE
Confidence 4555655445555555544432211 112244678999988 8899999999999999999999999999998889999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
+++..|+++
T Consensus 104 vvt~~dl~~ 112 (113)
T cd04615 104 IVTEDDILR 112 (113)
T ss_pred EEEHHHhhc
Confidence 999999864
No 14
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=2.9e-08 Score=70.06 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=62.9
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++..++..+.+....+... ....++.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+
T Consensus 27 ~~~V~d~~~~~~G~v~~~~l~~~-----~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~ 99 (108)
T cd04596 27 RFPVVDEKNKVVGIVTSKDVAGK-----DPDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGI 99 (108)
T ss_pred ceeEECCCCeEEEEecHHHHhcc-----cccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEE
Confidence 45555554555555544443321 134579999988 88999999999999999999999999999988999999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++.+|+++
T Consensus 100 it~~di~~ 107 (108)
T cd04596 100 ISRQDVLK 107 (108)
T ss_pred EEHHHhhc
Confidence 99999874
No 15
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.58 E-value=1.8e-08 Score=85.38 Aligned_cols=88 Identities=24% Similarity=0.299 Sum_probs=68.1
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
++++++..++..|.++...+...-........++.++|.+ ++.++.+++++.++++.|.++++..+||+|++|+++|+
T Consensus 232 ~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGv 309 (321)
T PRK11543 232 LVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGA 309 (321)
T ss_pred EEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence 5666776666666665444432111122234568999998 89999999999999999999999999999987899999
Q ss_pred eeccceeeee
Q 030753 132 VSDYDLLALD 141 (172)
Q Consensus 132 Vt~~Dll~~~ 141 (172)
|+.+|++++.
T Consensus 310 It~~di~~~~ 319 (321)
T PRK11543 310 INLQDFYQAG 319 (321)
T ss_pred EEHHHHHhcc
Confidence 9999998653
No 16
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=4.7e-08 Score=70.02 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=66.7
Q ss_pred cccchhhhhccCceeeecCceeccCCC----CC------CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcc
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAA----PS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~----~~------~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lP 120 (172)
.++++++..++..+.+....++..... .. ....++.++|.+ ++.++.+++++.++++.|.+++...+|
T Consensus 25 ~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~ 102 (122)
T cd04635 25 TGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLP 102 (122)
T ss_pred CcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeee
Confidence 355666655666666666665432110 01 235578899987 889999999999999999999999999
Q ss_pred eecCCccEEEEeeccceee
Q 030753 121 VIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 121 Vvd~~~~lvGIVt~~Dll~ 139 (172)
|+|++|+++|+++.+|+++
T Consensus 103 Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 103 VVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred EEcCCCcEEEEEEhHHhhc
Confidence 9998899999999999875
No 17
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=3e-08 Score=70.43 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=62.5
Q ss_pred cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeeccc--ccHHHHHHHHHHhhhcCcceecCCcc
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWK 127 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~--~sl~eal~~m~~~~i~~lPVvd~~~~ 127 (172)
+++++.+. ++..+.+....+...... ......++.++|.+ ++.++.++ +++.+++++|.+++...+||+|++|+
T Consensus 26 ~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~ 102 (115)
T cd04620 26 SCVLVVEK-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQ 102 (115)
T ss_pred ceEEEcCC-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCC
Confidence 44555553 445566655554421111 11124578899988 78888877 68999999999999999999998899
Q ss_pred EEEEeeccceee
Q 030753 128 LVGLVSDYDLLA 139 (172)
Q Consensus 128 lvGIVt~~Dll~ 139 (172)
++|+||.+|+++
T Consensus 103 ~~Gvit~~dl~~ 114 (115)
T cd04620 103 LIGLVTAESIRQ 114 (115)
T ss_pred EEEEEEhHHhhc
Confidence 999999999875
No 18
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.54 E-value=4.1e-08 Score=69.14 Aligned_cols=86 Identities=27% Similarity=0.360 Sum_probs=65.3
Q ss_pred ccchhhhhccCceeeecCceeccCCCCC-CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC-CccEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLV 129 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~-~~~lv 129 (172)
.+++++..++..+.+....+........ ....++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ +++++
T Consensus 26 ~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~ 103 (114)
T cd04613 26 NFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLL 103 (114)
T ss_pred ceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEE
Confidence 3455555555556665555543222111 233789999988 8999999999999999999999999999987 78999
Q ss_pred EEeeccceee
Q 030753 130 GLVSDYDLLA 139 (172)
Q Consensus 130 GIVt~~Dll~ 139 (172)
|+++.+|++.
T Consensus 104 Gvvt~~di~~ 113 (114)
T cd04613 104 GILSRSDLLS 113 (114)
T ss_pred EEEEhHHhhc
Confidence 9999999864
No 19
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=4.6e-08 Score=69.09 Aligned_cols=85 Identities=27% Similarity=0.308 Sum_probs=62.6
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++..++..+.+....+............++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+
T Consensus 26 ~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~ 102 (111)
T cd04626 26 EIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGV 102 (111)
T ss_pred eEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEE
Confidence 4455554455556665555432211111123478899988 8889999999999999999999999999996 899999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
||..|++.
T Consensus 103 it~~di~~ 110 (111)
T cd04626 103 VRTKDILD 110 (111)
T ss_pred EEhHHhcc
Confidence 99999864
No 20
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.53 E-value=8.3e-08 Score=67.26 Aligned_cols=82 Identities=28% Similarity=0.347 Sum_probs=60.9
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecc-cccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~-~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
.+++++..++..+.++...+.... ....++.++|.. .+..+.+ ++++.++++.|.+.+...+||+|++|+++|
T Consensus 27 ~~~V~d~~~~~~G~v~~~~l~~~~----~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G 100 (110)
T cd04601 27 GLPVVDDDGKLVGIVTNRDLRFET----DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKG 100 (110)
T ss_pred eEEEEcCCCEEEEEEEhhHeeecc----cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEE
Confidence 445555445555555544443211 134578899977 6666666 999999999999999999999998899999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
+|+.+|+++
T Consensus 101 vi~~~dil~ 109 (110)
T cd04601 101 LITVKDIEK 109 (110)
T ss_pred EEEhhhhhc
Confidence 999999875
No 21
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.53 E-value=4.2e-08 Score=69.24 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=50.6
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.++.++|.+ ++.++.+++++.++++.|.+++...+||++++++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 578899987 8889999999999999999999999999997799999999999874
No 22
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.53 E-value=6.5e-08 Score=68.27 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=42.2
Q ss_pred eeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceee
Q 030753 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (172)
Q Consensus 95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~ 139 (172)
+.++.+++++.+++++|.++++.++||+|++ |+++|++|.+|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6789999999999999999999999999987 89999999999864
No 23
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=3.3e-08 Score=69.69 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=63.1
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++..+...|.+....+...-. ......++.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+
T Consensus 26 ~~~V~~~~~~~~G~v~~~~l~~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~ 102 (111)
T cd04639 26 EFPVVDGDGHLVGLLTRDDLIRALA-EGGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGL 102 (111)
T ss_pred cceEECCCCcEEEEeeHHHHHHHHH-hcCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEE
Confidence 4555555455555554444432111 11233478999988 89999999999999999999999999999977999999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++.+|+..
T Consensus 103 it~~dl~~ 110 (111)
T cd04639 103 VTLENVGE 110 (111)
T ss_pred EEHHHhhc
Confidence 99999864
No 24
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.52 E-value=4.5e-08 Score=68.53 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=60.6
Q ss_pred cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753 53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV 132 (172)
+++++..++..|.+....+.... ....++.++|.+ ++.++.+++++.++++.|.+.+...+||++++|+++|++
T Consensus 28 ~~v~d~~~~~~G~v~~~dl~~~~----~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvi 101 (109)
T cd04583 28 LLVVDKDNKLLGIVSLESLEQAY----KEAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101 (109)
T ss_pred EEEEcCCCcEEEEEEHHHHHHHh----hcCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEE
Confidence 34444444444555444432211 123468899988 889999999999999999999999999999889999999
Q ss_pred eccceee
Q 030753 133 SDYDLLA 139 (172)
Q Consensus 133 t~~Dll~ 139 (172)
+.+|+++
T Consensus 102 t~~~l~~ 108 (109)
T cd04583 102 TRSSLVD 108 (109)
T ss_pred ehHHhhc
Confidence 9999864
No 25
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=4.2e-08 Score=72.13 Aligned_cols=55 Identities=38% Similarity=0.498 Sum_probs=50.8
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+++.+|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4578999988 899999999999999999999999999999 799999999999875
No 26
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=4.3e-08 Score=69.20 Aligned_cols=86 Identities=27% Similarity=0.300 Sum_probs=64.6
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
++++.+..++..+.+....+............++.++|.+ ++.++.+++++.++++.|.+++...+||++++|+++|+
T Consensus 26 ~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gi 103 (112)
T cd04624 26 SVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGV 103 (112)
T ss_pred EEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEE
Confidence 4555555555566665555533222222234578899988 88999999999999999999999999999977999999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++..|+++
T Consensus 104 lt~~dl~~ 111 (112)
T cd04624 104 ISIRDLVR 111 (112)
T ss_pred EEHHHhcc
Confidence 99999874
No 27
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.51 E-value=6.3e-08 Score=81.97 Aligned_cols=59 Identities=37% Similarity=0.643 Sum_probs=56.2
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...+.+..|||++ +++++.+++++.++.++|.++++..+||+|++.+++|||+.+|+.+
T Consensus 241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~ 299 (382)
T COG3448 241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK 299 (382)
T ss_pred HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhh
Confidence 4577899999999 9999999999999999999999999999999999999999999986
No 28
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=5.7e-08 Score=70.29 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=51.2
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.+++++|.+ ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999998 8899999999999999999999999999998899999999999864
No 29
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.50 E-value=4.2e-08 Score=69.19 Aligned_cols=86 Identities=30% Similarity=0.423 Sum_probs=62.9
Q ss_pred ccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
.+++++..++..+.+....+...-.. ......++.++|.+ ++.++.+++++.+++++|.+++...+||++++++++|
T Consensus 27 ~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG 104 (114)
T cd04604 27 MTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVG 104 (114)
T ss_pred EEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEE
Confidence 44555554555555543333321111 11233479999988 8889999999999999999999999999997899999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
+|+.+||++
T Consensus 105 ~it~~di~~ 113 (114)
T cd04604 105 VLHIHDLLR 113 (114)
T ss_pred EEEHHHhhc
Confidence 999999875
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.48 E-value=7.3e-08 Score=68.58 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=62.2
Q ss_pred cchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEE
Q 030753 53 SDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLV 129 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lv 129 (172)
+++++..++..+.+....+....... .....++.++|.. ++.++.+++++.+++++|.+++...+||+|++ |+++
T Consensus 27 ~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~ 104 (115)
T cd04593 27 ALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVL 104 (115)
T ss_pred EEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEE
Confidence 34455445555555444433211111 1123458889988 89999999999999999999999999999876 7999
Q ss_pred EEeeccceee
Q 030753 130 GLVSDYDLLA 139 (172)
Q Consensus 130 GIVt~~Dll~ 139 (172)
|+|+.+|+++
T Consensus 105 Gvit~~di~~ 114 (115)
T cd04593 105 GLLTRENVLL 114 (115)
T ss_pred EEEEhHHhhc
Confidence 9999999875
No 31
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.47 E-value=5.1e-08 Score=82.91 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=66.9
Q ss_pred cccchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV 129 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv 129 (172)
+++++++..++..|.++...+....... .....+|+++|++ ++.++.+++++.+++++|.++++..+||++ +++++
T Consensus 236 ~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lv 312 (326)
T PRK10892 236 GMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLL 312 (326)
T ss_pred CeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEE
Confidence 3455556566666777655543211111 2345689999999 999999999999999999999999999998 58999
Q ss_pred EEeeccceeee
Q 030753 130 GLVSDYDLLAL 140 (172)
Q Consensus 130 GIVt~~Dll~~ 140 (172)
|+||.+|+++.
T Consensus 313 Giit~~dil~~ 323 (326)
T PRK10892 313 GVLHMHDLLRA 323 (326)
T ss_pred EEEEhHHhHhc
Confidence 99999999864
No 32
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.47 E-value=8e-08 Score=67.43 Aligned_cols=86 Identities=30% Similarity=0.423 Sum_probs=62.6
Q ss_pred cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
+.+++++. +...+.+....+............++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus 25 ~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G 101 (111)
T cd04612 25 RGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVG 101 (111)
T ss_pred CcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEE
Confidence 34555554 44455554444432211111112367889988 8999999999999999999999999999987799999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
+++..|+.+
T Consensus 102 ~it~~di~~ 110 (111)
T cd04612 102 IVSRSDLLR 110 (111)
T ss_pred EEEHHHhhh
Confidence 999999864
No 33
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.46 E-value=7.7e-08 Score=67.51 Aligned_cols=85 Identities=28% Similarity=0.343 Sum_probs=62.1
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++. ++..|.+....+............++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+
T Consensus 26 ~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gv 102 (111)
T cd04611 26 SIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGL 102 (111)
T ss_pred EEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEE
Confidence 3444443 44445554444432221111145678999988 88999999999999999999999999999987999999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++.+|+++
T Consensus 103 i~~~di~~ 110 (111)
T cd04611 103 LSQTDLLQ 110 (111)
T ss_pred EEhHHhhc
Confidence 99999875
No 34
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=6.1e-08 Score=69.00 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=63.2
Q ss_pred ccchhhhh-ccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753 52 SSDRVSAL-RRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (172)
Q Consensus 52 ~~~~~~~~-~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l 128 (172)
++++++.. +...|.+..+.+...-.. ......++.++|.. ++.++.+++++.++++.|.+++...+||+|+ |++
T Consensus 26 ~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~ 102 (114)
T cd04630 26 SLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NEL 102 (114)
T ss_pred EEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEE
Confidence 34444444 455566655555432111 12234678999987 8999999999999999999999999999986 999
Q ss_pred EEEeeccceee
Q 030753 129 VGLVSDYDLLA 139 (172)
Q Consensus 129 vGIVt~~Dll~ 139 (172)
+|+|+.+|+++
T Consensus 103 ~Gvi~~~dl~~ 113 (114)
T cd04630 103 IGIISLTDIFL 113 (114)
T ss_pred EEEEEHHHhhc
Confidence 99999999875
No 35
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.46 E-value=6e-08 Score=80.52 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
..+.+|+|+|.+ ++++++.++.+.||+++|..++++++.|+|.+|+++||+|+.|++...
T Consensus 231 ~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 231 NLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred CccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 456799999999 999999999999999999999999999999899999999999998643
No 36
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.46 E-value=8.5e-08 Score=86.77 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=69.3
Q ss_pred cccchhhh---hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCcc
Q 030753 51 TSSDRVSA---LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK 127 (172)
Q Consensus 51 r~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~ 127 (172)
+.+++++. .+...+.+..+.+... ....+.+|+++|++.++++++.+++++.+++++|.++++..+||+|++++
T Consensus 129 ~~vpVVD~~~~~gkLvGIVT~~DLr~~---~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~ 205 (502)
T PRK07107 129 STVAVTEDGTAHGKLLGIVTSRDYRIS---RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGN 205 (502)
T ss_pred CeEEEEeCCCcCCEEEEEEEcHHhhcc---ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 35566654 3455555555554321 12345689999996447889999999999999999999999999998899
Q ss_pred EEEEeeccceeeeeccc
Q 030753 128 LVGLVSDYDLLALDSIS 144 (172)
Q Consensus 128 lvGIVt~~Dll~~~~~~ 144 (172)
++|+||.+|+++....+
T Consensus 206 LvGIIT~~Dilk~~~~P 222 (502)
T PRK07107 206 LVYLVFRKDYDSHKENP 222 (502)
T ss_pred EEEEEEhHHHHhcccCh
Confidence 99999999999765443
No 37
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.44 E-value=7.8e-08 Score=67.77 Aligned_cols=83 Identities=30% Similarity=0.464 Sum_probs=61.5
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
.+++++. +...+.+....+.... .......++.++|.+ ++.++.+++++.+++++|.+++...+||++ +|+++|+
T Consensus 27 ~~~V~d~-~~~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gv 101 (110)
T cd04595 27 ALPVVEG-GRVVGIISRRDVEKAL-RHGLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGI 101 (110)
T ss_pred eeeEeeC-CEEEEEEEHHHHHHHH-hcccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEE
Confidence 4455554 4444555444432211 112245678999988 899999999999999999999999999999 7899999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
||..|+++
T Consensus 102 vt~~di~~ 109 (110)
T cd04595 102 VTRTDLLR 109 (110)
T ss_pred EEhHHhhc
Confidence 99999864
No 38
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=1e-07 Score=68.27 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=51.7
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 35678899987 8899999999999999999999999999997789999999999875
No 39
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=1.1e-07 Score=67.14 Aligned_cols=54 Identities=44% Similarity=0.621 Sum_probs=49.9
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++|.. ++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 58999988 8899999999999999999999999999987799999999999865
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=2e-07 Score=67.30 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=46.7
Q ss_pred cceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (172)
Q Consensus 86 ~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll 138 (172)
.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 357777 889999999999999999999999999999889999999999975
No 41
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1e-07 Score=66.96 Aligned_cols=85 Identities=32% Similarity=0.417 Sum_probs=63.4
Q ss_pred ccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV 129 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv 129 (172)
.+++++..+...+.+....+..+.... .....++.++|.+ ++.++.+++++.++++.|.+.+...+||+++ |+++
T Consensus 26 ~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~ 102 (113)
T cd04623 26 AVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLV 102 (113)
T ss_pred eEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEE
Confidence 455555545555666555544322111 1224578999988 8899999999999999999999999999986 8999
Q ss_pred EEeeccceee
Q 030753 130 GLVSDYDLLA 139 (172)
Q Consensus 130 GIVt~~Dll~ 139 (172)
|+++.+|+++
T Consensus 103 Gvit~~di~~ 112 (113)
T cd04623 103 GIVSIGDVVK 112 (113)
T ss_pred EEEEHHHhhc
Confidence 9999999864
No 42
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=8.7e-08 Score=69.72 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=59.9
Q ss_pred ccchhhhhccCceeeecCceeccC----C-C--CCCCeeEecceeeccceeeee------cccccHHHHHHHHHHhhhcC
Q 030753 52 SSDRVSALRRSSAVFASGTLTANS----A-A--PSSGVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITG 118 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~----~-~--~~~~~~~V~diM~~~~~~~~v------~~~~sl~eal~~m~~~~i~~ 118 (172)
++++++..+...|.++...+.... . . ......+++++|.+ +...+ .+++++.++++.|.+++...
T Consensus 26 ~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~ 103 (126)
T cd04640 26 LLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQH 103 (126)
T ss_pred EEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCce
Confidence 445555444545555444443211 0 0 12245679999987 54433 26889999999999999999
Q ss_pred cceecCC-ccEEEEeeccceee
Q 030753 119 FPVIDDD-WKLVGLVSDYDLLA 139 (172)
Q Consensus 119 lPVvd~~-~~lvGIVt~~Dll~ 139 (172)
+||+|++ |+++|+||..|+++
T Consensus 104 lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 104 ALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred EEEEECCCCEEEEEEeHHHHhh
Confidence 9999976 79999999999864
No 43
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=1.3e-07 Score=70.39 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.3
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..+++++|.+ ++..+.+++++.++++.|.+++...+||+++ |+++|+|+.+|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4579999988 8889999999999999999999999999986 89999999999864
No 44
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.40 E-value=1.6e-07 Score=66.29 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=51.8
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 4578999988 88999999999999999999999999999988999999999998753
No 45
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.40 E-value=1.5e-07 Score=67.03 Aligned_cols=55 Identities=35% Similarity=0.455 Sum_probs=48.5
Q ss_pred eEecceeeccceeeeecc--cccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~--~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.+++++|.. ++..+.. ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 468899987 6666655 999999999999999999999998899999999999864
No 46
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.40 E-value=2.3e-07 Score=64.91 Aligned_cols=55 Identities=35% Similarity=0.522 Sum_probs=46.1
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
+.+|++... .+.++.+++++.+++++|.+++...+||+|++|+++|+++.+|+++
T Consensus 41 ~~~dl~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 41 TERDLIAKS-EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EHHHHhcCC-CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 444544331 3678999999999999999999999999997799999999999875
No 47
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=1.3e-07 Score=66.80 Aligned_cols=85 Identities=27% Similarity=0.386 Sum_probs=61.7
Q ss_pred ccchhhhhccCceeeecCceeccCCC---CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l 128 (172)
.+++++..++..|.+....+...-.. ......++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |++
T Consensus 26 ~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~ 102 (114)
T cd04629 26 GGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKL 102 (114)
T ss_pred CccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEE
Confidence 34455444444555544443321111 11234578899988 8889999999999999999999999999996 899
Q ss_pred EEEeeccceee
Q 030753 129 VGLVSDYDLLA 139 (172)
Q Consensus 129 vGIVt~~Dll~ 139 (172)
+|++|.+|+.+
T Consensus 103 ~Gvit~~di~~ 113 (114)
T cd04629 103 VGQISRRDVLR 113 (114)
T ss_pred EEEEEHHHHhc
Confidence 99999999875
No 48
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=1e-07 Score=67.53 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=61.7
Q ss_pred ccchhhhhccCceeeecCceeccCCCC---CC---CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAP---SS---GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~ 125 (172)
.+++++..++..|.+....+..+.... .. ...++.++|.+ ++.++.+++++.++++.|.+.+ .+||+|++
T Consensus 26 ~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~ 101 (116)
T cd04643 26 AIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDD 101 (116)
T ss_pred eeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCC
Confidence 455565555556666555554322211 01 14578999998 8999999999999999998765 58999988
Q ss_pred ccEEEEeeccceee
Q 030753 126 WKLVGLVSDYDLLA 139 (172)
Q Consensus 126 ~~lvGIVt~~Dll~ 139 (172)
|+++|++|.+|+++
T Consensus 102 ~~~~Gvit~~dil~ 115 (116)
T cd04643 102 GIFIGIITRREILK 115 (116)
T ss_pred CeEEEEEEHHHhhc
Confidence 99999999999875
No 49
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.39 E-value=2e-07 Score=65.09 Aligned_cols=56 Identities=27% Similarity=0.537 Sum_probs=50.8
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...+.++|.+ .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 3468899988 7889999999999999999999999999998899999999999874
No 50
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=1.9e-07 Score=68.35 Aligned_cols=53 Identities=36% Similarity=0.605 Sum_probs=49.3
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++|.+ ++..+.+++++.+++++|.+.+...+||+|+ |+++|++|..|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 78899988 8899999999999999999999999999997 99999999999875
No 51
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.36 E-value=3e-07 Score=65.26 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.4
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4578899988 8999999999999999999999999999997799999999999875
No 52
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=2.6e-07 Score=65.18 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=50.1
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.. ++.++.+++++++++++|.+++...+||++ +|+++|+||.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3579999987 888999999999999999999999999998 589999999999875
No 53
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.35 E-value=2e-07 Score=72.59 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=55.8
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
..++++.+|+. +++.+.|++++.+++++|.++|++.+||+++ ++++|-||..++.+.....
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG 123 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc
Confidence 66899999999 9999999999999999999999999999985 8999999999998765443
No 54
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.34 E-value=2.1e-07 Score=65.56 Aligned_cols=83 Identities=31% Similarity=0.380 Sum_probs=60.7
Q ss_pred cchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 53 SDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
+++++. +...+.+....+...... ......++.++|.. ++.++.+++++.++++.|.+++.+.+||+++ |+++|+
T Consensus 27 i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gi 102 (111)
T cd04800 27 LLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGV 102 (111)
T ss_pred EEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEE
Confidence 344443 444455544444321111 11233578999988 8999999999999999999999999999986 899999
Q ss_pred eeccceee
Q 030753 132 VSDYDLLA 139 (172)
Q Consensus 132 Vt~~Dll~ 139 (172)
++.+|+++
T Consensus 103 it~~di~~ 110 (111)
T cd04800 103 ISATDLLR 110 (111)
T ss_pred EEHHHhhc
Confidence 99999875
No 55
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.34 E-value=5.6e-07 Score=63.43 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=43.2
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++ |+++|++|..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~ 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence 57899999999999999999999999999975 899999999999864
No 56
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=3.5e-07 Score=66.38 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.4
Q ss_pred ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
+.|.. ++.++.+++++.+++++|.+++...+||+|++++++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 56666 7889999999999999999999999999997799999999999864
No 57
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=4.2e-07 Score=65.30 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCC--Ce------eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSS--GV------YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID 123 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~------~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd 123 (172)
++|++...+...|.+....+......... .. +...++|.. ++.++.+++++.++++.|.+++.+.+||+|
T Consensus 26 ~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 26 ALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred eeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEEC
Confidence 55666655555566554444421111100 01 122234445 678999999999999999999999999999
Q ss_pred CCccEEEEeeccceee
Q 030753 124 DDWKLVGLVSDYDLLA 139 (172)
Q Consensus 124 ~~~~lvGIVt~~Dll~ 139 (172)
++|+++|+||.+|+++
T Consensus 104 ~~~~~~Givt~~di~~ 119 (120)
T cd04641 104 ENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCCEEEEEEHHHhhc
Confidence 7799999999999875
No 58
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.34 E-value=6.4e-08 Score=70.86 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=62.2
Q ss_pred ccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHH---------HhhhcCcce
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPV 121 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~---------~~~i~~lPV 121 (172)
.+++++..+...|.++...+...... ....+.+++++|.+ ++.++.+++++.++++++. +.+...+||
T Consensus 27 ~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v 104 (124)
T cd04608 27 QLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIG 104 (124)
T ss_pred EEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccc
Confidence 45556555555555554444321111 12245699999999 9999999999999999653 336778899
Q ss_pred ecCCccEEEEeeccceeee
Q 030753 122 IDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 122 vd~~~~lvGIVt~~Dll~~ 140 (172)
++++|+++||||.+|++++
T Consensus 105 ~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 105 KEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred cccccceEEEEehhHhhhh
Confidence 9877999999999999764
No 59
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.33 E-value=4.4e-07 Score=63.32 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=49.4
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++|.+ .+.++.+++++.++++.|.++++..+||+|++|+++|+++.+|+++
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 47899988 7788999999999999999999999999998889999999999864
No 60
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=3.3e-07 Score=63.74 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=49.7
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll 138 (172)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 3468899988 8999999999999999999999999999996 9999999999986
No 61
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.32 E-value=2.4e-07 Score=78.75 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=59.3
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc--C-CCCCCCCCCcC
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--G-SGRADNSMFPE 156 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~--~-~~~~~~~m~~~ 156 (172)
..++|+|+|++.+++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+.+..... . ...+.+.|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence 5678999998533688999999999999999999988888888889999999999987543221 1 34455666553
No 62
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.30 E-value=2.8e-07 Score=64.79 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=50.1
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.++.++|.. ++.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 568889887 8899999999999999999999999999997799999999999864
No 63
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.30 E-value=3.1e-07 Score=79.29 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=75.1
Q ss_pred EeecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCcc
Q 030753 48 VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK 127 (172)
Q Consensus 48 ~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~ 127 (172)
+.|--||+++......+.+ ..+++..+..+.+++.+|++ +|.++.+.+++..+.+.|.-.+++.+||+|++.+
T Consensus 219 t~~sRfPVvn~~~kvvGvV-----t~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~ 291 (432)
T COG4109 219 TGHSRFPVVNRSMKVVGVV-----TMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNT 291 (432)
T ss_pred cCCCccceecccceEEEEE-----EehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCce
Confidence 4667789998777665555 55666667788999999999 9999999999999999999999999999999999
Q ss_pred EEEEeeccceeee
Q 030753 128 LVGLVSDYDLLAL 140 (172)
Q Consensus 128 lvGIVt~~Dll~~ 140 (172)
++|+||++|+++.
T Consensus 292 llGiitR~dvlk~ 304 (432)
T COG4109 292 LLGIITRQDVLKS 304 (432)
T ss_pred EEEEEEHHHHHHH
Confidence 9999999999854
No 64
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=3.3e-07 Score=64.61 Aligned_cols=56 Identities=34% Similarity=0.665 Sum_probs=50.0
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.+ ++.++.+++++.+++++|.+++...+||+|++ +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 34578899988 88899999999999999999999999999865 8999999999864
No 65
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=4.8e-07 Score=65.01 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=51.1
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3478899987 8999999999999999999999999999997789999999999875
No 66
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.3e-07 Score=77.91 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=75.8
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC------CCCCCC
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------SGRADN 151 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~------~~~~~~ 151 (172)
+..+..|+|+|.+|.+.+++..+.++.+++..+.+...+++||+.++ +.+.||+..+||++...... ...+..
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPa 142 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPA 142 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccc
Confidence 34567999999999999999999999999999999999999999765 78999999999998643331 345566
Q ss_pred CCCcCc---cchhhhhhhhccccC
Q 030753 152 SMFPEV---DSTWKVYIQRGAEVA 172 (172)
Q Consensus 152 ~m~~~~---~~l~~~l~~i~~lma 172 (172)
.+.|+. +.+.+-|+.-+.+||
T Consensus 143 v~VPESKrvd~lLkeFR~~RnHMA 166 (293)
T COG4535 143 VVVPESKRVDRLLKEFRSQRNHMA 166 (293)
T ss_pred eecccchhHHHHHHHHHhhcCceE
Confidence 667754 556666777777776
No 67
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.23 E-value=4e-07 Score=64.10 Aligned_cols=84 Identities=20% Similarity=0.135 Sum_probs=58.2
Q ss_pred ccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
+++++... +...|.+....+..... ......++.++| . ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus 26 ~~~v~~~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G 101 (111)
T cd04590 26 RFPVYDGDLDNIIGVVHVKDLLRALA-EGEEDLDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAG 101 (111)
T ss_pred eEEEECCCCceEEEEEEHHHHHHHHH-cCCCcCCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEE
Confidence 34444443 44455554444332211 111113566665 4 5788999999999999999999999999998899999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
++|.+|+++
T Consensus 102 vit~~di~~ 110 (111)
T cd04590 102 LVTLEDILE 110 (111)
T ss_pred EeEHHHhhc
Confidence 999999864
No 68
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.22 E-value=6.5e-07 Score=75.91 Aligned_cols=89 Identities=28% Similarity=0.324 Sum_probs=73.3
Q ss_pred cccchhhhhccCceeeecCceeccCC------CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSA------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~ 124 (172)
|..|+++..++..+.+....+....- ......-+++.+|++ .+.++.++++..+.+-++.+.+...+||+|+
T Consensus 277 kaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~ 354 (382)
T COG3448 277 KALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDA 354 (382)
T ss_pred ccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence 67799999998888876555544111 012356789999999 8999999999999999999999999999999
Q ss_pred CccEEEEeeccceeeee
Q 030753 125 DWKLVGLVSDYDLLALD 141 (172)
Q Consensus 125 ~~~lvGIVt~~Dll~~~ 141 (172)
+|+++||||..|++...
T Consensus 355 ~g~lvGIvsQtDliaal 371 (382)
T COG3448 355 AGKLVGIVSQTDLIAAL 371 (382)
T ss_pred CCcEEEEeeHHHHHHHH
Confidence 99999999999998543
No 69
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.20 E-value=4.9e-07 Score=81.44 Aligned_cols=60 Identities=30% Similarity=0.414 Sum_probs=54.9
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
.+++++|++ ++.++.+++++.+++++|.++++..+||+|++++++|+||.+||++....+
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 569999998 999999999999999999999999999999889999999999999755443
No 70
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.20 E-value=4.6e-07 Score=76.77 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=52.4
Q ss_pred eeEecceeeccce--eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 82 ~~~V~diM~~~~~--~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
..+|+++|.+ + +.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~ 254 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRW 254 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHH
Confidence 6789999999 7 9999999999999999999998999999988999999999998753
No 71
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=9.9e-07 Score=62.97 Aligned_cols=56 Identities=38% Similarity=0.657 Sum_probs=50.8
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.. ++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 34578889988 8899999999999999999999999999997 89999999999875
No 72
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.19 E-value=5.3e-07 Score=81.17 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=55.3
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
..+++++|++ +++++.+++++.+++++|.++++..+||+|++|+++|+||.+||++....+
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 3579999998 999999999999999999999999999999889999999999999754443
No 73
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.19 E-value=5.1e-07 Score=64.38 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=50.6
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34578899988 8899999999999999999999999999986 89999999999875
No 74
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.19 E-value=6.6e-07 Score=81.89 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
....++++|+|++ ++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.
T Consensus 443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~ 502 (574)
T PRK01862 443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSD 502 (574)
T ss_pred HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHH
Confidence 3467899999998 88899999999999999999999999999988999999999998863
No 75
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.19 E-value=5.5e-07 Score=82.37 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=66.4
Q ss_pred cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--cc
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WK 127 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~ 127 (172)
+.+++++..++..+.+...++...-.. ....+.+++|+|.+ ++.++++++++++++++|.+++.+.+||+|++ ++
T Consensus 479 ~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~ 556 (574)
T PRK01862 479 KYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPT 556 (574)
T ss_pred ceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCe
Confidence 355666666555666655554332111 12234578999988 88999999999999999999999999999876 48
Q ss_pred EEEEeeccceeee
Q 030753 128 LVGLVSDYDLLAL 140 (172)
Q Consensus 128 lvGIVt~~Dll~~ 140 (172)
++|+||.+|+.+.
T Consensus 557 liGvIt~~DIl~~ 569 (574)
T PRK01862 557 LAGVVYKTSLLDA 569 (574)
T ss_pred EEEEEEHHHHHHH
Confidence 9999999999864
No 76
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.18 E-value=1.4e-06 Score=61.55 Aligned_cols=53 Identities=45% Similarity=0.747 Sum_probs=49.2
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHH-hhhcCcceecCCc-cEEEEeecccee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 138 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~-~~i~~lPVvd~~~-~lvGIVt~~Dll 138 (172)
++.++|+. ++.++.+++++.++++.|.+ +++..+||+++++ +++|++|..|+.
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 68999998 88999999999999999999 6999999999875 999999999873
No 77
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.18 E-value=9.5e-07 Score=72.73 Aligned_cols=80 Identities=30% Similarity=0.333 Sum_probs=60.5
Q ss_pred ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI 131 (172)
++++++..++..+.+....+............+++++|.+ ++.++.+++++.+++++|.+++...+||+|++|+++|+
T Consensus 189 ~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Gv 266 (268)
T TIGR00393 189 SAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGV 266 (268)
T ss_pred EEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEE
Confidence 4455655555666665555433211122245679999988 88999999999999999999999999999988999999
Q ss_pred ee
Q 030753 132 VS 133 (172)
Q Consensus 132 Vt 133 (172)
|+
T Consensus 267 I~ 268 (268)
T TIGR00393 267 LH 268 (268)
T ss_pred EC
Confidence 85
No 78
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.17 E-value=5.7e-07 Score=81.49 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=56.4
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
.+.+|.++|++.++++++.+++++.+++++|.++++..+||+|++++++|+||.+|+++....+
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence 4568999999822388999999999999999999999999999889999999999999766554
No 79
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=1.9e-06 Score=60.24 Aligned_cols=47 Identities=32% Similarity=0.510 Sum_probs=43.3
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 57789999999999999999999999999988999999999998863
No 80
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=1e-06 Score=63.11 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=50.5
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.++.++|.. ++.++.+++++.++++.|.+++...+||+|++++++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 468899988 8999999999999999999999999999997799999999999875
No 81
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.16 E-value=6.9e-07 Score=79.71 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=54.9
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~ 143 (172)
.+.+++++|.+ ++.++.++++++++++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 34579999998 88999999999999999999999999999988999999999999965443
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.16 E-value=1.1e-06 Score=79.38 Aligned_cols=64 Identities=33% Similarity=0.427 Sum_probs=56.8
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
...+|+++|++.++++++.+++++.+++++|.++++..+||+|++++++|+||.+|+++....+
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p 220 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP 220 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc
Confidence 3568999998755788999999999999999999999999999889999999999999765443
No 83
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.13 E-value=1.6e-06 Score=61.10 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=50.4
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.+ ++..+.+++++.++++.|.+++...+||+|+ ++++|+++..|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 34578899988 8889999999999999999999999999984 89999999999865
No 84
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=1.7e-06 Score=60.76 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=49.6
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++|.+ ++.++.++++++++++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 58899987 8889999999999999999999999999998899999999999864
No 85
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.13 E-value=1e-06 Score=61.51 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=57.9
Q ss_pred ccchhhhhccCceeeecCceeccCCCCC-CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
.+++++. +...+.+....+........ ....++.++|.+ ++.++.+++++.+++++|.+ . ..+||++++|+++|
T Consensus 26 ~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~G 100 (110)
T cd04609 26 QLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVG 100 (110)
T ss_pred eeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEE
Confidence 3455554 44455555444443322111 113568899987 88899999999999999988 3 34789987899999
Q ss_pred Eeeccceee
Q 030753 131 LVSDYDLLA 139 (172)
Q Consensus 131 IVt~~Dll~ 139 (172)
+||.+|+.+
T Consensus 101 vvt~~di~~ 109 (110)
T cd04609 101 IITRADLLK 109 (110)
T ss_pred EEeHHHhhc
Confidence 999999875
No 86
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.13 E-value=7.9e-07 Score=80.79 Aligned_cols=59 Identities=32% Similarity=0.423 Sum_probs=54.1
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~ 142 (172)
..+|+|+|.+ ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+..|+.+...
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~ 125 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYM 125 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 3589999998 9999999999999999999999999999998899999999999986443
No 87
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.13 E-value=1.8e-06 Score=60.56 Aligned_cols=53 Identities=30% Similarity=0.492 Sum_probs=48.5
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++|.+ .+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57788987 889999999999999999999999999998 689999999999864
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.12 E-value=9.8e-07 Score=72.66 Aligned_cols=57 Identities=37% Similarity=0.500 Sum_probs=52.4
Q ss_pred eeEecceeeccce-eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 82 ~~~V~diM~~~~~-~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
-.+|+++|.+ + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+.
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~ 211 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA 211 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence 4789999988 7 8999999999999999999999999999988999999999998764
No 89
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=2.4e-06 Score=61.29 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=43.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~ 48 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHH
Confidence 57889999999999999999999999999988999999999998854
No 90
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.10 E-value=2.6e-06 Score=63.66 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=44.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~ 49 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFL 49 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence 578899999999999999999999999999889999999999988644
No 91
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.2e-06 Score=76.20 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=78.2
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--------CCC
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------SGR 148 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--------~~~ 148 (172)
.+++.++|+|+|++|.++..++.+++.+++.+.+.+..+.++|+..++ ++++|+++.+|+++.....+ ..-
T Consensus 195 LDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a 274 (423)
T COG4536 195 LDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA 274 (423)
T ss_pred cccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh
Confidence 466889999999999999999999999999999999999999999766 78999999999997765444 223
Q ss_pred CCCCCCcCccchhhhhhhhcc
Q 030753 149 ADNSMFPEVDSTWKVYIQRGA 169 (172)
Q Consensus 149 ~~~~m~~~~~~l~~~l~~i~~ 169 (172)
.+.++.|+-.++..+|..+|+
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~ 295 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQR 295 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHH
Confidence 567778888888887777654
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.10 E-value=1.9e-06 Score=78.39 Aligned_cols=59 Identities=29% Similarity=0.519 Sum_probs=54.3
Q ss_pred CeeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 81 ~~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
...+|+++|+ + ++.++.+++++.++.+.|.++++..+||+|++|+++|+++.+|+.+..
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV 303 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence 4568999999 7 899999999999999999999999999999889999999999998643
No 93
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.10 E-value=3.1e-06 Score=49.83 Aligned_cols=45 Identities=42% Similarity=0.735 Sum_probs=40.6
Q ss_pred eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
+.++.+++++.++++.|.+.++..+||++++++++|+++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence 467889999999999999999999999997789999999998764
No 94
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=2.3e-06 Score=61.99 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=49.7
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec--CCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd--~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.+ +++++.+++++.+++++|.+++...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4578899988 899999999999999999999999999985 3589999999999875
No 95
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.08 E-value=2.6e-06 Score=76.79 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=54.2
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
....+++.++|.+ +++++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+..
T Consensus 85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 85 VVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred HHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 3466788999998 9999999999999999999999999999998899999999999864
No 96
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.06 E-value=1.6e-06 Score=59.75 Aligned_cols=53 Identities=43% Similarity=0.771 Sum_probs=48.6
Q ss_pred ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
+.++|.. ++..+.+++++.++++.|.+.+...+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 6678887 8889999999999999999999999999998899999999999864
No 97
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.05 E-value=1.7e-06 Score=76.63 Aligned_cols=59 Identities=34% Similarity=0.400 Sum_probs=54.3
Q ss_pred CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
+..++++++|.+ ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.+.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 390 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA 390 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 577899999998 89999999999999999999999999999988999999999998863
No 98
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.05 E-value=3.9e-06 Score=59.51 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=45.4
Q ss_pred eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 88 iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
+|.+ ++.++.+++++.++++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7877 888999999999999999999999999996 689999999999875
No 99
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.02 E-value=2.1e-06 Score=62.74 Aligned_cols=63 Identities=33% Similarity=0.451 Sum_probs=50.3
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc---cCCCCCCCCCCcC
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFPE 156 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~---~~~~~~~~~m~~~ 156 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+++.... ....++.+.|..+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~ 68 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ 68 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence 67889999999999999999999999999988999999999998853221 2234555555443
No 100
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.01 E-value=7.2e-06 Score=58.20 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=42.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 46788999999999999999999999999988999999999998763
No 101
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.00 E-value=3e-06 Score=76.35 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=66.2
Q ss_pred cccchhhhhccCceeeecCceeccCCCCCCCeeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753 51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV 129 (172)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv 129 (172)
..+|+++..+...+.+....+... .....++.++|+ . +++++.+++++.++++.|.+++++.+||+|++|+++
T Consensus 119 ~~lpVvd~~g~lvGiVt~~DL~~~----~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv 192 (486)
T PRK05567 119 SGVPVVDENGKLVGIITNRDVRFE----TDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK 192 (486)
T ss_pred CEEEEEccCCEEEEEEEHHHhhhc----ccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence 456666655555555544443211 113457999998 5 789999999999999999999999999999889999
Q ss_pred EEeeccceeeeec
Q 030753 130 GLVSDYDLLALDS 142 (172)
Q Consensus 130 GIVt~~Dll~~~~ 142 (172)
|+||.+||++...
T Consensus 193 GiIT~~DLl~~~~ 205 (486)
T PRK05567 193 GLITVKDIEKAEE 205 (486)
T ss_pred EEEEhHHhhhhhh
Confidence 9999999986543
No 102
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.00 E-value=4.5e-06 Score=59.46 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.+.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~ 48 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQ 48 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHH
Confidence 46788999999999999999999999999988999999999998853
No 103
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00 E-value=6.5e-06 Score=58.92 Aligned_cols=47 Identities=40% Similarity=0.711 Sum_probs=43.1
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++.+.|.+.+++.+||+|++|+++|+|+.+|+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~ 49 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH 49 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence 67889999999999999999999999999977999999999998753
No 104
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.99 E-value=3.2e-06 Score=75.59 Aligned_cols=60 Identities=33% Similarity=0.501 Sum_probs=54.4
Q ss_pred eeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753 82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (172)
Q Consensus 82 ~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~ 143 (172)
..+++++|+ . ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus 142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF 202 (450)
T ss_pred CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence 457999998 5 78999999999999999999999999999988999999999999976543
No 105
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=9.1e-06 Score=57.09 Aligned_cols=48 Identities=31% Similarity=0.442 Sum_probs=43.7
Q ss_pred ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
+++.++.++++++++++.|.+.+.+.+||+|++|+++|+++..|+...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 467889999999999999999999999999988999999999998753
No 106
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.98 E-value=2.4e-06 Score=63.72 Aligned_cols=55 Identities=31% Similarity=0.642 Sum_probs=49.7
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..++.++|.. ++.++.+++++.++++.|.+.+...+||+++ ++++|+++.+|+++
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4568889988 8999999999999999999999999999986 89999999999864
No 107
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.98 E-value=5.8e-06 Score=71.58 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=62.7
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~ 155 (172)
+.+-++|+|+|+|.++..++.+++++++..++..+.+.+++||+|+..+++|+|+.+|+.... .+++.+.+|..
T Consensus 184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~---~~t~ieKVMtk 257 (432)
T COG4109 184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK---PSTTIEKVMTK 257 (432)
T ss_pred hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC---CCccHHHHhcc
Confidence 456789999999888999999999999999999999999999999889999999999988543 23444455554
No 108
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=5.7e-06 Score=58.43 Aligned_cols=48 Identities=33% Similarity=0.416 Sum_probs=43.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence 678899999999999999999999999999889999999999987543
No 109
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.94 E-value=9.1e-06 Score=58.85 Aligned_cols=48 Identities=29% Similarity=0.511 Sum_probs=43.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 577899999999999999999999999999889999999999988644
No 110
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=5.9e-06 Score=58.75 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=48.7
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhc---CcceecCCccEEEEeeccceee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~---~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
...++.++|.+ ++.++.+++++.++++.|.+++.. ..+|++++|+++|+|+..|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 34578999988 899999999999999999988753 4578887899999999999864
No 111
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.92 E-value=1e-05 Score=56.73 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA 49 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence 67789999999999999999999999999988999999999998753
No 112
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.91 E-value=1.4e-05 Score=56.12 Aligned_cols=47 Identities=34% Similarity=0.607 Sum_probs=42.4
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~ 48 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRA 48 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHH
Confidence 56778999999999999998999999999977999999999998754
No 113
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.91 E-value=2.7e-06 Score=77.23 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=65.1
Q ss_pred hhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccc
Q 030753 58 ALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136 (172)
Q Consensus 58 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~D 136 (172)
......|.+.+-.+...-+ .......+|+++|+. ++++++.++-+.+|+-.|.+++|.++||++ +|+++||||..|
T Consensus 188 ~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~d 264 (610)
T COG2905 188 DSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTD 264 (610)
T ss_pred CCCCccceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHH
Confidence 3344444443333333333 345677899999999 999999999999999999999999999997 699999999999
Q ss_pred eeeeecc
Q 030753 137 LLALDSI 143 (172)
Q Consensus 137 ll~~~~~ 143 (172)
|++....
T Consensus 265 Il~l~s~ 271 (610)
T COG2905 265 ILRLFSQ 271 (610)
T ss_pred HHHhhCC
Confidence 9976553
No 114
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.90 E-value=5.3e-06 Score=58.00 Aligned_cols=54 Identities=37% Similarity=0.551 Sum_probs=48.2
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.++.++|.. ++.++.++++++++++.|.+++...+||+|+ |+++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 357788887 8889999999999999999999999999984 79999999999864
No 115
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.90 E-value=1.3e-05 Score=55.76 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=42.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 56788999999999999999999999999978999999999998864
No 116
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.90 E-value=1.6e-05 Score=55.75 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~ 48 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH
Confidence 56789999999999999999999999999988999999999999753
No 117
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.87 E-value=1.5e-05 Score=56.55 Aligned_cols=47 Identities=34% Similarity=0.386 Sum_probs=42.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA 48 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHH
Confidence 56788999999999999999999999999988999999999998854
No 118
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=1e-05 Score=57.24 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=42.1
Q ss_pred eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP 50 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence 5678999999999999997765 88899999889999999999988644
No 119
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.84 E-value=1.6e-05 Score=71.14 Aligned_cols=56 Identities=32% Similarity=0.546 Sum_probs=51.1
Q ss_pred eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceee
Q 030753 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 139 (172)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~ 139 (172)
-...+++|.+ ++.++.+++++.+++++|.+++++.+||+|++ ++++|+|+.+|+..
T Consensus 79 Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 79 VKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred hccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 3467888988 99999999999999999999999999999977 69999999999974
No 120
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=1.5e-05 Score=59.16 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=44.2
Q ss_pred ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
|++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++..
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~ 49 (135)
T cd04621 1 EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE 49 (135)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence 3677899999999999999999999999999889999999999998643
No 121
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.82 E-value=2e-05 Score=55.31 Aligned_cols=48 Identities=31% Similarity=0.502 Sum_probs=43.5
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+.+++.+||+|++ |+++|+++..|+.+..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~ 50 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRAL 50 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHH
Confidence 57789999999999999999999999999987 8999999999988644
No 122
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.81 E-value=1.9e-05 Score=55.26 Aligned_cols=47 Identities=36% Similarity=0.596 Sum_probs=42.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~ 48 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRK 48 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHH
Confidence 56788999999999999999999999999977999999999998854
No 123
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.80 E-value=1.7e-05 Score=57.33 Aligned_cols=46 Identities=33% Similarity=0.614 Sum_probs=42.4
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.+++++|.+.+++.+||+|++|+++|+++..|+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 47 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVD 47 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHH
Confidence 5678899999999999999999999999998899999999999874
No 124
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.80 E-value=6.6e-06 Score=73.64 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=65.4
Q ss_pred hhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeec
Q 030753 55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134 (172)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~ 134 (172)
+++..+...|.++ .+.+-....+.+++++|.+ +++++.++++.+++++++.++++-.+||||++++++|++|.
T Consensus 173 VvD~~~~L~Gvvs-----l~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~iti 245 (451)
T COG2239 173 VVDEKGKLLGVVS-----LRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITI 245 (451)
T ss_pred EECCccceEEEee-----HHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeH
Confidence 4555555555543 3333334467799999999 89999999999999999999999999999999999999999
Q ss_pred cceeeeec
Q 030753 135 YDLLALDS 142 (172)
Q Consensus 135 ~Dll~~~~ 142 (172)
.|++....
T Consensus 246 DDiidvi~ 253 (451)
T COG2239 246 DDIIDVIE 253 (451)
T ss_pred HHHHHHHH
Confidence 99986543
No 125
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.80 E-value=1.9e-05 Score=56.34 Aligned_cols=47 Identities=34% Similarity=0.573 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.+++++|.+.+++.+||++++|+++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~ 48 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHH
Confidence 56789999999999999999999999999977999999999998754
No 126
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=1.5e-05 Score=57.38 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=42.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.++++..+||+|++ |+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~ 49 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEF 49 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHH
Confidence 67789999999999999999999999999987 899999999998753
No 127
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=2.5e-05 Score=55.70 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 57789999999999999999999999999988999999999998753
No 128
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.75 E-value=3.2e-05 Score=53.84 Aligned_cols=47 Identities=30% Similarity=0.476 Sum_probs=42.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.++..+||+|++++++|+++..|+.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 49 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA 49 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence 56788999999999999999999999999987999999999998754
No 129
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.75 E-value=2.3e-05 Score=55.53 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~ 49 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKK 49 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHH
Confidence 57789999999999999999999999999987 899999999998753
No 130
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.75 E-value=8e-06 Score=74.18 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=66.7
Q ss_pred CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC---CCCCCCCCCcC
Q 030753 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPE 156 (172)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~---~~~~~~~m~~~ 156 (172)
+-..++.++|+. ++++|.+..++.+|+.+|.+.|++.+.|+++++...||||.+|+.......+ .+.+..+|+..
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p 223 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP 223 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence 345688999999 9999999999999999999999999999998899999999999997765544 67788888876
Q ss_pred c
Q 030753 157 V 157 (172)
Q Consensus 157 ~ 157 (172)
+
T Consensus 224 ~ 224 (610)
T COG2905 224 V 224 (610)
T ss_pred c
Confidence 5
No 131
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.75 E-value=2.2e-05 Score=56.14 Aligned_cols=48 Identities=35% Similarity=0.440 Sum_probs=43.4
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.++++..+||+|++++++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~ 49 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKAS 49 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 467899999999999999999999999999889999999999988644
No 132
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.74 E-value=3e-05 Score=56.58 Aligned_cols=47 Identities=36% Similarity=0.668 Sum_probs=42.9
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~ 48 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRK 48 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHH
Confidence 57789999999999999999999999999988999999999998753
No 133
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.74 E-value=3.2e-05 Score=69.77 Aligned_cols=54 Identities=33% Similarity=0.527 Sum_probs=50.6
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.++++|.+ ++.++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+..
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 56889998 9999999999999999999999999999998899999999999864
No 134
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.74 E-value=2.3e-05 Score=55.02 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=42.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~ 48 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA 48 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHH
Confidence 56788999999999999999999999999988999999999998754
No 135
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.73 E-value=2.9e-05 Score=54.55 Aligned_cols=46 Identities=39% Similarity=0.616 Sum_probs=42.2
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~ 47 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK 47 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHH
Confidence 5678899999999999999999999999998899999999999875
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.72 E-value=2.5e-05 Score=70.79 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=54.0
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~ 155 (172)
..++.|.. ++.++.+++++.+++++|.+++++.+||+|++ ++++|+|+.+|+.... .....+.+.|.+
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~ 167 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTP 167 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCC
Confidence 46678888 89999999999999999999999999999863 7999999999987322 123344445543
No 137
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.72 E-value=5.4e-05 Score=52.42 Aligned_cols=46 Identities=30% Similarity=0.581 Sum_probs=41.4
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.++++..+||+| +++++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567789999999999999999989999998 6899999999998864
No 138
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.71 E-value=3.7e-05 Score=53.97 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=42.9
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDL 48 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHH
Confidence 56788999999999999999999999999988999999999998854
No 139
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.70 E-value=3.6e-05 Score=68.74 Aligned_cols=61 Identities=28% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHH-----hhhcCcceecCCccEEEEeeccceeee
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~-----~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
..+...+++++|++ ++.++.+++++.++++.|++ ++...++|+|++++++|+|+.+|++..
T Consensus 126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a 191 (449)
T TIGR00400 126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA 191 (449)
T ss_pred hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC
Confidence 34577899999998 99999999999999999986 456678899988999999999998753
No 140
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.67 E-value=3.8e-05 Score=55.65 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=41.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.++++..+||+|++|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4578899999999999999999999999997799999999999885
No 141
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=4.2e-05 Score=56.00 Aligned_cols=47 Identities=45% Similarity=0.775 Sum_probs=43.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.++..+||+|++++++|+++..|+.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~ 49 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR 49 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence 67789999999999999999999999999988999999999998753
No 142
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.66 E-value=1.5e-05 Score=67.54 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=50.4
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~ 142 (172)
.++.++|.+ +.++.+++++.++++.|.+++...+||+|+.|.++|+||.+|++....
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv 189 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence 457888866 458999999999999999999999999998899999999999996544
No 143
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=4.1e-05 Score=54.81 Aligned_cols=47 Identities=36% Similarity=0.620 Sum_probs=42.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.+++++|.+.+++.+||+|++ |+++|+|+.+|+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~ 49 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY 49 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHH
Confidence 56788999999999999999999999999987 999999999998753
No 144
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.66 E-value=5.3e-05 Score=51.95 Aligned_cols=48 Identities=46% Similarity=0.769 Sum_probs=42.9
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+.+...+||+|++++++|+++.+|+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRAL 49 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHH
Confidence 567789999999999999999999999999879999999999988544
No 145
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.64 E-value=6.4e-05 Score=52.54 Aligned_cols=44 Identities=32% Similarity=0.353 Sum_probs=39.9
Q ss_pred eeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 96 ~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 46789999999999999999999999997 999999999998753
No 146
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.64 E-value=2.9e-05 Score=70.42 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=54.5
Q ss_pred Eecceeecc-ceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753 84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (172)
Q Consensus 84 ~V~diM~~~-~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~ 155 (172)
+|+++|... .++.++.+++++.+++++|.+++++.+||+|+ +++++|+||..|+.... ...+..+.++|.+
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~~~~V~dIMt~ 169 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSLDTKVKDFMTP 169 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCCCCCHHHHhCC
Confidence 477777521 15578999999999999999999999999996 58999999999986432 2234456666664
No 147
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.62 E-value=4.8e-05 Score=53.08 Aligned_cols=47 Identities=36% Similarity=0.597 Sum_probs=42.5
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP 48 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH
Confidence 5778999999999999999999999999997 9999999999988543
No 148
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.62 E-value=4.5e-05 Score=53.62 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=42.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~ 47 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS 47 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHH
Confidence 4577899999999999999999999999998899999999999875
No 149
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.60 E-value=6.4e-05 Score=53.15 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=42.5
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~ 141 (172)
....+.+++++.++.+.|.+.++..+||+|+ +|+++|+|+.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 5677899999999999999999999999997 68999999999987543
No 150
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.58 E-value=0.0001 Score=51.36 Aligned_cols=47 Identities=49% Similarity=0.711 Sum_probs=42.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE 49 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence 56788999999999999999999999999987999999999998753
No 151
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.58 E-value=5.4e-05 Score=52.63 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=42.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++++.+||+|+ ++++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~ 47 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDA 47 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHH
Confidence 4678899999999999999999999999997 999999999998864
No 152
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.57 E-value=7.1e-05 Score=53.13 Aligned_cols=47 Identities=43% Similarity=0.742 Sum_probs=42.5
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA 48 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence 46788999999999999999999999999988999999999998753
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.56 E-value=5.4e-05 Score=68.78 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=52.2
Q ss_pred cceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (172)
Q Consensus 86 ~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~ 155 (172)
+..|.+ +++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+.... ....++.++|.+
T Consensus 103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~~~~~V~eIMt~ 171 (505)
T PLN02274 103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--DRETKLSEVMTS 171 (505)
T ss_pred cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--ccCCcHHHHhcc
Confidence 444777 8999999999999999999999999999986 37999999999986432 223444455543
No 154
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.54 E-value=6.5e-05 Score=52.53 Aligned_cols=46 Identities=37% Similarity=0.553 Sum_probs=42.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~ 47 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA 47 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH
Confidence 5678899999999999999999999999997 999999999998864
No 155
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=6.6e-05 Score=53.56 Aligned_cols=45 Identities=29% Similarity=0.469 Sum_probs=41.3
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~ 46 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLK 46 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHH
Confidence 5678999999999999999999999999996 89999999999875
No 156
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.50 E-value=6.5e-05 Score=52.65 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=43.1
Q ss_pred ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
+++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~ 50 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRAL 50 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHH
Confidence 3667889999999999999988889999999889999999999887543
No 157
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.48 E-value=0.00012 Score=51.88 Aligned_cols=46 Identities=37% Similarity=0.576 Sum_probs=41.5
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+.+++.+||+|+ +|+++|+++.+|+..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 5678899999999999999999999999996 689999999999874
No 158
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00011 Score=51.14 Aligned_cols=46 Identities=35% Similarity=0.580 Sum_probs=41.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.++.++.+++..|.+.+++.+||++++++++|+++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~ 47 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR 47 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence 5778899999999999999989999999997799999999999874
No 159
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.48 E-value=9.7e-05 Score=52.15 Aligned_cols=47 Identities=40% Similarity=0.578 Sum_probs=42.3
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++++++++.++++.|.+.++..+||+|+ |+++|+++..|+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLAS 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhh
Confidence 5678899999999999999999999999997 9999999999988643
No 160
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.00012 Score=51.69 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=41.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+.++..++|+|++|+++|+++.+|+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~ 48 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRR 48 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHH
Confidence 4577899999999999999999999999998899999999999874
No 161
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.0001 Score=54.91 Aligned_cols=46 Identities=39% Similarity=0.621 Sum_probs=42.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~ 47 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKL 47 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHH
Confidence 5778999999999999999999999999997 999999999998753
No 162
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.45 E-value=0.00013 Score=65.78 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=51.7
Q ss_pred CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
....+++.++|.+ +++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+..
T Consensus 84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~ 141 (475)
T TIGR01303 84 TVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLG 141 (475)
T ss_pred HHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhc
Confidence 3456788899998 999999999999999999999999999988 478999999999864
No 163
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.43 E-value=0.00013 Score=51.13 Aligned_cols=44 Identities=32% Similarity=0.624 Sum_probs=40.7
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll 138 (172)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~ 45 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIV 45 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHH
Confidence 5678999999999999999999999999997 9999999999986
No 164
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.41 E-value=0.00012 Score=51.07 Aligned_cols=47 Identities=32% Similarity=0.531 Sum_probs=41.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL 48 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence 4678899999999999999989999999986 8999999999988543
No 165
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.41 E-value=0.00015 Score=50.71 Aligned_cols=45 Identities=38% Similarity=0.597 Sum_probs=41.2
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.++++++++.+.|.+.+++.+||+|+ ++++|+++..|+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~ 46 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRN 46 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHH
Confidence 5678899999999999999989999999996 99999999999875
No 166
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.40 E-value=0.00012 Score=51.58 Aligned_cols=56 Identities=39% Similarity=0.677 Sum_probs=48.2
Q ss_pred ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC
Q 030753 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (172)
Q Consensus 87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~ 145 (172)
++|.+ ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.+......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG 58 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence 34556 8899999999999999999999999999984 48999999999997765443
No 167
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.40 E-value=0.00015 Score=50.85 Aligned_cols=45 Identities=40% Similarity=0.554 Sum_probs=40.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+.+|++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~ 46 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIAL 46 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHH
Confidence 5678899999999999999999999999996 99999999999863
No 168
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00015 Score=51.59 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=41.6
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.++..+||+|+ |+++|+++..|+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~ 47 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADA 47 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHh
Confidence 5678899999999999999999999999996 999999999998754
No 169
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.39 E-value=0.00015 Score=50.80 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=41.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++..++++.++.+.|.+.+++.+||+|+ |+++|+|+..|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~ 48 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKA 48 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHH
Confidence 5778899999999999999999999999997 999999999998753
No 170
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.39 E-value=0.00028 Score=48.93 Aligned_cols=45 Identities=40% Similarity=0.716 Sum_probs=40.8
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 5778899999999999999888888999986 99999999999875
No 171
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00014 Score=50.99 Aligned_cols=43 Identities=42% Similarity=0.460 Sum_probs=37.4
Q ss_pred ecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceeee
Q 030753 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 98 v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
+.+++++.++++.|.+++ +..+||+|++|+++|+|+.+|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~ 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence 578899999999999877 4678999978999999999998763
No 172
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.33 E-value=7.4e-05 Score=66.06 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=49.9
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
.++.++|.+ +.++.+++++.++++.|++++....+|+|+.|.++|+||.+|++...
T Consensus 255 ~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei 310 (408)
T TIGR03520 255 FDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred CCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 457788755 67899999999999999999999999999879999999999999654
No 173
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.32 E-value=0.0002 Score=50.23 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=41.2
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.++++++++++.|.+.+.+.++|+|+ ++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDA 47 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHH
Confidence 5677899999999999999999999999997 899999999998754
No 174
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.29 E-value=7.2e-05 Score=66.30 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=58.1
Q ss_pred ccchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753 52 SSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (172)
Q Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG 130 (172)
++++++..++..+.+....+....... .....++.++|.+ ++.++.+++++.+++++|.+++ .|||+++++++|
T Consensus 368 ~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liG 442 (454)
T TIGR01137 368 QLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIG 442 (454)
T ss_pred EEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEE
Confidence 445555444555555544443321111 1234579999988 8889999999999999998754 355655789999
Q ss_pred Eeeccceeee
Q 030753 131 LVSDYDLLAL 140 (172)
Q Consensus 131 IVt~~Dll~~ 140 (172)
+||.+|+++.
T Consensus 443 vvt~~dll~~ 452 (454)
T TIGR01137 443 VVTKIDLLSF 452 (454)
T ss_pred EEEHHHHHHh
Confidence 9999998753
No 175
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00022 Score=50.53 Aligned_cols=46 Identities=33% Similarity=0.505 Sum_probs=40.9
Q ss_pred eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+ ++.+||+|+ |+++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~ 48 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL 48 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence 5667899999999999998877 889999998 999999999998743
No 176
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.20 E-value=0.00034 Score=48.99 Aligned_cols=46 Identities=37% Similarity=0.525 Sum_probs=41.1
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~ 47 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKK 47 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence 5677899999999999999999999999985 599999999998853
No 177
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00029 Score=62.23 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=61.5
Q ss_pred CceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 69 GTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 69 g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
|.+..++.. .+.....+.++|++ ++++...+.+++++-+++++++...+||||++|.++.++++.||.+...++
T Consensus 156 G~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yP 230 (503)
T KOG2550|consen 156 GIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYP 230 (503)
T ss_pred EEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCC
Confidence 444444442 24466789999999 778899999999999999999999999999999999999999998765544
No 178
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.98 E-value=0.0006 Score=48.02 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=39.1
Q ss_pred eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++ ...++|+| +|+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~ 48 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL 48 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence 5678899999999999998888 56677777 5899999999998853
No 179
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.93 E-value=0.00051 Score=59.96 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=49.2
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
.+.+.|.. ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++...
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 46777877 788899999999999999999998 99999899999999999988643
No 180
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0009 Score=46.78 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=39.2
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~ 47 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQA 47 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHH
Confidence 467789999999999999888877777666 5899999999998854
No 181
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.85 E-value=0.00041 Score=54.27 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=50.2
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
+...+.+|.++|.. .+.++++++++..+-+++.++. .+.|++ +|+++||+|..|+++..
T Consensus 125 e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 125 ESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKADIMKLL 183 (187)
T ss_pred cchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHHHHHHH
Confidence 34577899999998 9999999999999999998776 466774 79999999999998643
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.77 E-value=0.0007 Score=50.47 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=30.0
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~ 125 (172)
+++++.+++++.+++++|.++++..+||+|++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 78899999999999999999999999999854
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.00055 Score=60.51 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=49.3
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~ 143 (172)
.+.+++.. ...++.+++++.+++..+.+.... +||+|++|+++|+|+..++++....
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 57777777 788999999999999999987766 9999989999999999999875543
No 184
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.67 E-value=0.0012 Score=58.14 Aligned_cols=54 Identities=31% Similarity=0.470 Sum_probs=48.1
Q ss_pred ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (172)
Q Consensus 91 ~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~ 144 (172)
.++.+++|.++.++.++++.|..+++.++.|||++|.++|+|+..|++.+....
T Consensus 308 ~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 308 RFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 344789999999999999999999999999999889999999999999765443
No 185
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.71 E-value=0.009 Score=52.60 Aligned_cols=48 Identities=38% Similarity=0.616 Sum_probs=44.1
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++..+..++++.+++++|.+++++.+||||.+|+.+|+.+..|+....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence 578899999999999999999999999999888889999999988543
No 186
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.0087 Score=53.15 Aligned_cols=61 Identities=33% Similarity=0.419 Sum_probs=49.3
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceeeeecccCCCCCCCCCCcC
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~ 156 (172)
+++++.|+.++.++++.-..+++..+||.++. .+++|+||.+|+--. ........++|+++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTKN 180 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhcccc
Confidence 67889999999999999999999999999643 589999999998754 34455556666554
No 187
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.01 Score=53.32 Aligned_cols=60 Identities=42% Similarity=0.448 Sum_probs=52.5
Q ss_pred CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceee
Q 030753 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
..+..-+++.+|+. +++++.++.|+.+++..+++.+ +..+.|+|++++++|+++.++++.
T Consensus 127 l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~ 191 (451)
T COG2239 127 LSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT 191 (451)
T ss_pred cCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc
Confidence 34567789999999 9999999999999999999543 567889998899999999999884
No 188
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.012 Score=54.77 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=51.6
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
+.+..+|++ .|.++.+++++..+..++++-|+.++.|+++.++++|++|++|+.+..
T Consensus 690 vDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 690 VDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 456678888 899999999999999999999999999999888999999999998644
No 189
>PRK11573 hypothetical protein; Provisional
Probab=95.33 E-value=0.013 Score=52.10 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=43.9
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
++.++.++.++.++++.|++++.....|+|+-|...|+||.+|++...
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 578899999999999999999999999999889999999999999644
No 190
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.66 E-value=0.025 Score=50.28 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=44.4
Q ss_pred eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (172)
Q Consensus 94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~ 142 (172)
++..+.++.++.++++.|++.+.....|+|+-|.+.|+||..|++....
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 5788999999999999999999999999998899999999999996543
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.016 Score=53.80 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=56.0
Q ss_pred cCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-----ccEEEEeeccceeeee
Q 030753 74 NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALD 141 (172)
Q Consensus 74 ~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-----~~lvGIVt~~Dll~~~ 141 (172)
|+-+....+++++|+|.+ ++++++.-+.+..+.+.++...+..+||+|+. +++.|++-+..++...
T Consensus 573 ~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 573 WEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred CCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 444456678899999999 99999999999999999999999999999853 4788999888877443
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=92.16 E-value=0.082 Score=46.62 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=49.2
Q ss_pred eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.+-.|++.-..+|.+++.++++.+-+..|.+++-..-.|||+=|.+.|+||.+|++.-
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE 322 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE 322 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence 4556666544478999999999999999999988888899977999999999999854
No 193
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.79 E-value=0.089 Score=46.36 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=42.8
Q ss_pred EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.+.+ +.. +..++.+++++.+++..+.+.+. -++|+|+ |+++|+|+..+++..
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHA 378 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHH
Confidence 4566 455 67889999999999998888775 4788885 999999999998754
No 194
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.68 E-value=0.19 Score=47.84 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=51.9
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEEEEeeccceeeee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD 141 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lvGIVt~~Dll~~~ 141 (172)
..+.|+++|.+ ++.++..++|..|..+.+....+..+|+||+. ..++|.|.++.|....
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 56899999999 99999999999999999988779999999854 4699999999987543
No 195
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.73 E-value=0.22 Score=46.49 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=49.6
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.....+++|.. .+.++...++.+.+++++++-+...+-|. ++|++.|+||++|+++.
T Consensus 637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 44677889888 88999999999999999999999887665 47999999999998853
No 196
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.12 E-value=0.48 Score=40.21 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (172)
Q Consensus 101 ~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~ 139 (172)
.....+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 344455777788889999999999999999999999864
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.23 E-value=0.45 Score=41.54 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=42.1
Q ss_pred eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 88 iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
.+.+ .+.++.+++.+.+.+..+.+... .++|+|++++++|+++...++.+.
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence 4455 67788999999999988887765 579999999999999999887543
No 198
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=85.72 E-value=0.62 Score=41.30 Aligned_cols=58 Identities=24% Similarity=0.192 Sum_probs=44.9
Q ss_pred eEecceeeccce-eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 83 ~~V~diM~~~~~-~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.++.++|.+... .+...++....+++..|.+.+.+.+.|+|++++++|+++.+++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTA 332 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhh
Confidence 456677754101 1223466788999999999999999999989999999999998754
No 199
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=83.19 E-value=1.4 Score=38.57 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=39.9
Q ss_pred eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
.....++.+..++++.|...+.+.+.|+|+++++.|+++.+++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 298 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR 298 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh
Confidence 34456677899999999999999999999889999999999987543
No 200
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=81.49 E-value=0.74 Score=38.54 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=63.3
Q ss_pred EeecccchhhhhccCceeeecCceeccCCC----CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753 48 VLATSSDRVSALRRSSAVFASGTLTANSAA----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID 123 (172)
Q Consensus 48 ~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd 123 (172)
+-|--||++...+ ..+ -|.++++.+. .......++++..+ .+.+++.-.+...++-++.++.....|+|
T Consensus 98 saHSRfPVi~edk---D~v-~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViD 170 (293)
T COG4535 98 SAHSRFPVISEDK---DHV-EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVID 170 (293)
T ss_pred hccccCCcccCCc---hhh-hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEe
Confidence 3455677776533 334 5667777662 22344667777655 67788888889999999988888888999
Q ss_pred CCccEEEEeeccceeeee
Q 030753 124 DDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 124 ~~~~lvGIVt~~Dll~~~ 141 (172)
+=|-+-|+||..|++...
T Consensus 171 EfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 171 EFGGVSGLVTIEDILEQI 188 (293)
T ss_pred ccCCeeeeEEHHHHHHHH
Confidence 779999999999998644
No 201
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=77.45 E-value=1.1 Score=41.07 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=57.2
Q ss_pred CCCeeEecceeeccceeeeecccccHH-HHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeec---c------cCCC
Q 030753 79 SSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS---I------SGSG 147 (172)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~sl~-eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~---~------~~~~ 147 (172)
.+....++++|++-+++..+..+..+. +......++|++++||.+.+ ...+|.+-...+.+... . ....
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~ 279 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESA 279 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhh
Confidence 455678899999988888888888886 66667779999999999865 33344422222222221 0 0122
Q ss_pred CCCCCCCcCccchhhhhhhhcc
Q 030753 148 RADNSMFPEVDSTWKVYIQRGA 169 (172)
Q Consensus 148 ~~~~~m~~~~~~l~~~l~~i~~ 169 (172)
.......++...+++.++++|+
T Consensus 280 ~~~l~~vp~~~~~~~~l~~~~~ 301 (498)
T KOG2118|consen 280 LLRLPLVPENMPLLDLLNEFQK 301 (498)
T ss_pred ccccccCCCcccHHHHHHHHhh
Confidence 2333345666777776666554
No 202
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.24 E-value=2.1 Score=40.16 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=40.2
Q ss_pred cceeeccc---eeeeeccc-ccHHHHHHHHHHhhhcCccee-cC-CccEEEEeecccee
Q 030753 86 GDFMTTKE---ELHVVKPT-TTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLL 138 (172)
Q Consensus 86 ~diM~~~~---~~~~v~~~-~sl~eal~~m~~~~i~~lPVv-d~-~~~lvGIVt~~Dll 138 (172)
.++|.+.+ ...++..+ ++++|...+|.+..++.+||+ ++ .+.++|+|.++|+.
T Consensus 546 ~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~ 604 (696)
T KOG0475|consen 546 IPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLF 604 (696)
T ss_pred hhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHH
Confidence 44554432 24555544 899999999999999999997 33 37899999999977
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=58.07 E-value=2.9 Score=40.18 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=54.3
Q ss_pred eecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753 66 FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (172)
Q Consensus 66 ~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~ 143 (172)
+....+..|+......++...++-..- .+..+-+.+++.++-.++.-.|+++.-|.+ -|+++|+|.+++|.++..+
T Consensus 784 ~~~eei~~we~~~l~~~ld~~~~~IDp-aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 784 LSAEEIKEWEEEQLSQKLDLDECAIDP-APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred cChhhhhHHHHHHhccccchhhCCCCC-CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 334444444432233444455554441 466788899999999999999999999997 5999999999999876544
No 204
>PF14044 NETI: NETI protein
Probab=48.20 E-value=19 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.1
Q ss_pred eecccccHHHHHHHHHHhhhcCccee
Q 030753 97 VVKPTTTVDEALEILVEKRITGFPVI 122 (172)
Q Consensus 97 ~v~~~~sl~eal~~m~~~~i~~lPVv 122 (172)
.+.+++|+.+.+++|.+.|+ .||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 46789999999999999886 5664
No 205
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=44.99 E-value=15 Score=26.26 Aligned_cols=18 Identities=44% Similarity=0.443 Sum_probs=13.7
Q ss_pred CcceecCCccEEEEeecc
Q 030753 118 GFPVIDDDWKLVGLVSDY 135 (172)
Q Consensus 118 ~lPVvd~~~~lvGIVt~~ 135 (172)
..||.|.+|+++|+|...
T Consensus 93 ~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEE-TTS-EEEEEEEE
T ss_pred EEeeECCCCcEEEEEEEE
Confidence 489998889999999864
No 206
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=40.36 E-value=30 Score=32.33 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (172)
Q Consensus 102 ~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~ 141 (172)
..++.+.+...+.|-.-++|+. ++++.|+|+.+|+.+-.
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~G 451 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPG 451 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchh
Confidence 4577788888888888899987 68999999999998643
No 207
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=34.05 E-value=32 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=17.3
Q ss_pred HHHhhhcCcceecCCccEEEE
Q 030753 111 LVEKRITGFPVIDDDWKLVGL 131 (172)
Q Consensus 111 m~~~~i~~lPVvd~~~~lvGI 131 (172)
....+.+.=||+|.+|+++||
T Consensus 100 ~~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 100 DTRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp S-STTTTTSEEEETTSEEEEE
T ss_pred ccCCCcEeHhEECCCCEEEeC
Confidence 345688889999999999997
No 208
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=27.18 E-value=47 Score=21.74 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=13.5
Q ss_pred cceecCCccEEEEeec
Q 030753 119 FPVIDDDWKLVGLVSD 134 (172)
Q Consensus 119 lPVvd~~~~lvGIVt~ 134 (172)
.||.+++|+++|++..
T Consensus 19 ~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEETTTEEEEEEEE
T ss_pred EEEECCCCCEEEEEEE
Confidence 6888878999999864
No 209
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=25.23 E-value=29 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.7
Q ss_pred cCcceecCCccEEEEeeccceeeeec
Q 030753 117 TGFPVIDDDWKLVGLVSDYDLLALDS 142 (172)
Q Consensus 117 ~~lPVvd~~~~lvGIVt~~Dll~~~~ 142 (172)
..+-|+|++|..+|+++..+.++...
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHH
Confidence 34667898999999999999875433
No 210
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.35 E-value=43 Score=29.53 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=43.3
Q ss_pred CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (172)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~ 140 (172)
.-.+++++|.+......-.+...-..+++.+.+.+.+.+-+++.+++.+|+|+..++.+.
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~ 331 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA 331 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc
Confidence 446788888852122233344455678888998888888888877889999999998764
No 211
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.63 E-value=64 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.1
Q ss_pred hhhcCcceecCCccEEEEee
Q 030753 114 KRITGFPVIDDDWKLVGLVS 133 (172)
Q Consensus 114 ~~i~~lPVvd~~~~lvGIVt 133 (172)
.|-+.=|+.|+.|++||||-
T Consensus 105 ~GDSGRpi~DNsGrVVaIVL 124 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVL 124 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEe
Confidence 34556799998899999984
No 212
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=20.15 E-value=64 Score=23.75 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.2
Q ss_pred CcceecCCccEEEEeecc
Q 030753 118 GFPVIDDDWKLVGLVSDY 135 (172)
Q Consensus 118 ~lPVvd~~~~lvGIVt~~ 135 (172)
.+||.|..|++||+--+.
T Consensus 80 ifPI~d~~G~vvgF~gR~ 97 (128)
T PF08275_consen 80 IFPIRDERGRVVGFGGRR 97 (128)
T ss_dssp EEEEE-TTS-EEEEEEEE
T ss_pred EEEEEcCCCCEEEEeccc
Confidence 489999899999987653
Done!