BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030755
(172 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 348 bits (893), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 166/169 (98%), Positives = 167/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/169 (97%), Positives = 167/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DA+CSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/169 (97%), Positives = 166/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLI AFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLITAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 163/169 (96%), Positives = 167/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 160/169 (94%), Positives = 169/169 (100%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/169 (94%), Positives = 169/169 (100%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/169 (95%), Positives = 166/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKS+RGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/169 (95%), Positives = 166/169 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKS+RGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 163/169 (96%), Positives = 165/169 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCKKHTEVV DHSAGDTVCSECGLVLESHSIDETSEWR FANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGASG+FLS+SLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 334 bits (856), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 157/169 (92%), Positives = 164/169 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGD VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGASG+FLSSSLGRWQNRGSNPDRGLILAFKTI TM++RLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LV TIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 162/170 (95%), Gaps = 1/170 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
GLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 170
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 151/169 (89%), Positives = 160/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/171 (92%), Positives = 163/171 (95%), Gaps = 2/171 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI+AFKTIATMSDR
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDR 120
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 171
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 150/169 (88%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 150/169 (88%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 324 bits (830), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 149/169 (88%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/169 (89%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D +C DCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES DNDPVRVG
Sbjct: 1 MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLLADGGLSTVI+KP GASG+FL+SSLGRWQNRGSNPDR LI AFKTIATMSDRLG
Sbjct: 61 GPSNPLLADGGLSTVISKPTGASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVEDQK RGRNQDA+LAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVK 169
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 148/169 (87%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D +C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/158 (95%), Positives = 158/158 (100%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG
Sbjct: 1 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 60
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
L+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLGLVATIKDRANE
Sbjct: 61 LTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANE 120
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 158
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 146/169 (86%), Positives = 160/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/169 (90%), Positives = 159/169 (94%), Gaps = 6/169 (3%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M++ FCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNG SGEFLSSS+GRWQN RGLI+AFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGGSGEFLSSSVGRWQN------RGLIVAFKTIATMSDRLG 114
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 115 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 163
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/169 (86%), Positives = 160/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/164 (90%), Positives = 156/164 (95%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK TEVVFDHSAGDTVC ECGLVLE+HSIDETSEWRTFANE+GDNDPVRVGGP+NP
Sbjct: 7 CPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL DGGLSTVI+KPNGASG+FLSSSLGRWQNRGSNPDR LI+AFKTI TMSDRLGLVATI
Sbjct: 67 LLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATI 126
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
KDRANEIYKKVED KS RGRNQDA+LAACLYIACRQEDKPRTVK
Sbjct: 127 KDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVK 170
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+K
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIK 169
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 143/169 (84%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK++EDQK++RGRNQDAL AACLYIACRQEDKPRT+K
Sbjct: 121 LVATIKDRANEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKPRTIK 169
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/171 (84%), Positives = 156/171 (91%), Gaps = 2/171 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
MTD +C +CK++TEVV DHSAGDTVCSECGLVLE+HSIDE SEWRTFANES DNDPVRVG
Sbjct: 1 MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN--GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLLADGGLST+I+KP+ G S +FLSSSLGRWQNRGSNPDR LI AFKTIATM DR
Sbjct: 61 GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR 120
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LGLVATIKD ANEIYKKVEDQK RGRNQDA+LAAC+YIACRQEDKPRTVK
Sbjct: 121 LGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVK 171
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 141/169 (83%), Positives = 146/169 (86%), Gaps = 16/169 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKP+G S EFLSSSLGRWQ+R N RLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPSGGSSEFLSSSLGRWQSRVKNF----------------RLG 104
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 105 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 153
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 130/169 (76%), Positives = 149/169 (88%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C DCK+ TE+VFDHSAGDT+CSECGL+LE+HS+DETSEWRTF+NES D+DP RVG
Sbjct: 1 MEDSYCPDCKRLTEIVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP NPLLADGGLST I+K NG S E LS SLG+WQ+RG+NPDR I AFK+IA M+DRLG
Sbjct: 61 GPLNPLLADGGLSTTISKTNGGSNELLSCSLGKWQSRGANPDRNRIQAFKSIAAMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LV TIKDRANEIYKKVEDQK +GRNQDA+LAACLYIACRQE+K RTVK
Sbjct: 121 LVTTIKDRANEIYKKVEDQKPLKGRNQDAILAACLYIACRQENKARTVK 169
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/170 (75%), Positives = 149/170 (87%), Gaps = 2/170 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C +C+K TEVV DH+AGD VC+ECGLVLE HS+DE+SEWRTF+ +S +DPVRVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFS-DSTSSDPVRVG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST+I+KPNGA G+F+SS LGRWQNRGSNPDR LI+AF++I TM+DRLG
Sbjct: 60 GPSNPLLTDGGLSTIISKPNGAQGDFMSS-LGRWQNRGSNPDRSLIIAFRSIGTMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
LV+TIKDRANEIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT K
Sbjct: 119 LVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRTFKA 168
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 120/169 (71%), Positives = 146/169 (86%), Gaps = 2/169 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGLVLE+H IDE+SEWRTF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DRLG
Sbjct: 61 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LV+TIKDRA+EIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT K
Sbjct: 119 LVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFK 167
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/140 (90%), Positives = 131/140 (93%)
Query: 30 GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSS 89
GL + +TSEWRTFANESGDNDPVRVGGP+NPLL DGGLSTVIAKPNG SG+FLSS
Sbjct: 30 GLCWSLTRLMQTSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGVSGDFLSS 89
Query: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDA 149
SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS+RGRNQDA
Sbjct: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDA 149
Query: 150 LLAACLYIACRQEDKPRTVK 169
LLAACLYIACRQEDKPRTVK
Sbjct: 150 LLAACLYIACRQEDKPRTVK 169
>gi|212721546|ref|NP_001131844.1| uncharacterized protein LOC100193219 [Zea mays]
gi|194692694|gb|ACF80431.1| unknown [Zea mays]
gi|414886464|tpg|DAA62478.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 136
Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/135 (82%), Positives = 121/135 (89%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKK 135
LVATIK R I +
Sbjct: 121 LVATIKTREKVIQNR 135
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 134/169 (79%), Gaps = 12/169 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGL+ TF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVG 50
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DRLG
Sbjct: 51 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 108
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LV+TIKDRA+EIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT K
Sbjct: 109 LVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFK 157
>gi|223975949|gb|ACN32162.1| unknown [Zea mays]
gi|414886467|tpg|DAA62481.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 144
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 110/118 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADR 118
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + CS+C+K T+VV D +AGD +C+ECGLVLE S+DET EWR FA+ S D R+G
Sbjct: 1 MYETVCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFAD-SSSIDRERIG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLLADGGLS+ I+K NGA G+ +SS L R G PD+ I+AF++I M+DRLG
Sbjct: 60 GPSNPLLADGGLSSFISKSNGAQGDVMSSIL-RQSKLGLIPDQSRIIAFRSIGNMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LV+TIKDRANEIYK V D K +R R+ +A+LA+CLYIACRQEDKPRT K
Sbjct: 119 LVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRTFK 167
>gi|414872963|tpg|DAA51520.1| TPA: hypothetical protein ZEAMMB73_142786, partial [Zea mays]
Length = 98
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 91/98 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTF NES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFTNESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG 98
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRG 98
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 116/174 (66%), Gaps = 9/174 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGGP
Sbjct: 7 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGP 66
Query: 63 TNPLLADGGLSTVIA-----KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
++P L++ L T IA K G G L G++ ++ L+ AF IA M+D
Sbjct: 67 SDPFLSNTPLVTRIAYAGPQKTQGEGGHALPRMRVSAGAGGADHEQALVDAFHAIADMAD 126
Query: 118 RLGLVATIKDRANEIYKKVEDQKS--SRGRNQDALLAACLYIACRQEDKPRTVK 169
RLGLV TI+DRA ++YK++++ K+ +RG+ +D AACLY+ACR E KPRT K
Sbjct: 127 RLGLVGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKPRTYK 180
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 10/174 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGG
Sbjct: 8 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGS 67
Query: 63 TNPLLADGGLSTVIAK--PNGASGEFLSSSLGRWQ---NRGSNPDRGLILAFKTIATMSD 117
++P LA+ L T IA P A GE +L R + G+ ++ L+ F IA M+D
Sbjct: 68 SDPFLANMPLVTQIAYAGPQKAQGEG-GHALPRLHVSASGGAGGEQTLVEGFHAIADMAD 126
Query: 118 RLGLVATIKDRANEIYKKVEDQKS--SRGRNQDALLAACLYIACRQEDKPRTVK 169
RLGLVATI+DRA ++YK++ + ++ RG+ +DA AACLY+ACR E KPRT K
Sbjct: 127 RLGLVATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACLYVACRNEGKPRTYK 180
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 4 AFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGG 61
FC C+ ++V D++ GD +C ECG+VL +DE SEWRTF+N ES +DP RVGG
Sbjct: 38 VFCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNRVGG 97
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRL 119
PTNPLL D GLSTVI K G S + SS+L R QNRG+ N DR L+ FK IA M+D +
Sbjct: 98 PTNPLLRDSGLSTVIGK--GTSKD--SSALSRMQNRGALANGDRSLLAGFKEIARMADHM 153
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
GL T++D ANE++++++D+KS +GR+ D +LAA LYIACR E RT K
Sbjct: 154 GLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGITRTFK 203
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYSHPEAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 134 ITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 178
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 114/175 (65%), Gaps = 10/175 (5%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVI----AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+P L D T I A P A L + R G +P+ L+ AF+ IA M+D
Sbjct: 70 RADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRR-RVDVVGPSPENALVAAFRGIADMAD 128
Query: 118 RLGLVATIKDRANEIYKKVEDQKSS---RGRNQDALLAACLYIACRQEDKPRTVK 169
RLGLVATI+DRA E++KK+ + + RGRN+DA+ AACL+IACR E PRT K
Sbjct: 129 RLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYK 183
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 177
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 177
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 177
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 177
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 37 CNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 96
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 97 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 155
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 156 ITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 200
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 178
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 178
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 178
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I+ M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVPRTFK 177
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 8 TNKVCCFYHPDAPLIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 67
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL+ G LST+I P S F +S ++QNR S+ DR LI AFK I+ M+DR+
Sbjct: 68 PENPLLSGGDLSTIIG-PGTGSASFDASGSPKYQNRRTMSSSDRSLISAFKEISMMADRI 126
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 127 NLPKTIIDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 176
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 11/177 (6%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVI----AKPNGASGEFLSSSL---GRWQNRGSNPDRGLILAFKTIAT 114
+P L D T I A P AS ++ L R G +P+ L+ AF+ IA
Sbjct: 70 RADPFLPDHVGGTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIAD 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSS--RGRNQDALLAACLYIACRQEDKPRTVK 169
M+DRLGLVATI+DRA E++KK+ + RGRN+D + AACL+IACR E PRT K
Sbjct: 130 MADRLGLVATIRDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYK 186
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DGGLST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGGLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF NE NDP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TMSDR+ L
Sbjct: 75 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSADRAMLNAFKEITTMSDRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 4/171 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF--ANESGDNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF A D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DRL LV
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 ATIKDRANEIYKKVEDQK-SSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
ATI+DRA E++KK+E+ K +R RN+DA AACL+IACR E PRT+K A
Sbjct: 130 ATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPRTLKELA 180
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
CS CK T +V DH+ GD +C+ECGLV+ES +IDE SEWRTF++ + DP R G T
Sbjct: 17 ICSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTVGAT 76
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +L+ GGLST I + P+G + +L R NR NPD+ L+ AF I M+DR+ +
Sbjct: 77 NNMLSGGGLSTTIGRNPDGT----FNQTLTRLHNREGNPDKVLMAAFSQIGDMADRMAMN 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TIK A E+YK V S++G++ A+ AACLYIACRQE K RT K
Sbjct: 133 QTIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKTRTFK 179
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL L+T+I P F S + R+QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLTTMIG-PGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 128 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 6/164 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C DCK +T +V DH GDT+CS+CGLVLES IDE +EWRTF +++ D DP RVG N
Sbjct: 1 YCKDCKANTYIVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVN 60
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
PLL+ G L T+I+ G ++ RWQ+ SN DR L+ F I +++RLGLV
Sbjct: 61 PLLSQGNLKTLISNNKG------DHAIPRWQDGVSNSDRVLLQGFDIIEIIANRLGLVRP 114
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
IKDRA EI+KK+E+QK+ R +D++ AACL+I+ R+ PRT+
Sbjct: 115 IKDRAKEIFKKIEEQKTCVMRKRDSICAACLFISSRENKLPRTL 158
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTIIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD VC ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 23 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 82
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 83 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 139
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 140 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 186
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 109/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVGGP NPL
Sbjct: 14 CYAHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I GA+ F + + ++QNR + + DR LI AF+ I M+DR+ L T
Sbjct: 74 LNGSDLSTIIGPGTGAA-SFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRINLPRT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 108/165 (65%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE +NDP RVGGP NPL
Sbjct: 14 CPQHPEAHLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I P F ++QNR S+ DR LI AF+ I+ M+D++ L T
Sbjct: 74 LNGSDLSTIIG-PGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA+ +A LYIACRQE PRT K
Sbjct: 133 IVDRANLLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFK 177
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 177
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 73
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 74 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 131 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 177
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 110/168 (65%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C K T ++ DH GD VC+ECGLVLES +DE+SEWRTF++ + DP R GPT
Sbjct: 18 ICRNCAKPTAIIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +LA+GGLST I K P+G + +L R NRG+NPDR L+ AF I M+D LG+
Sbjct: 78 NRMLANGGLSTSIGKNPDGTYNQ----TLTRLHNRGANPDRALLQAFGRIGEMADHLGMT 133
Query: 123 ATIKDRANEIYKK-VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +KD A +IY+ V+ + G++Q A+ AA LYIACRQE RT K
Sbjct: 134 SVVKDGACDIYRTVVKPGQPLLGKSQPAMFAASLYIACRQEGTNRTFK 181
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 77 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 134 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 180
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L L+T+I P + + + R+QNR + + DR LI AFK I M+DR+ L T
Sbjct: 74 LGGSDLTTMIG-PGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRINLPRT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 172
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL L+T+I P AS F S + R+QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLTTMIG-PGDAS--FDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 126 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFK 175
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 10 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 69
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 70 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 126
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 127 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 173
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEIASMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 176 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 235
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 236 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 292
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 293 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 339
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 52 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 111
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 112 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 168
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 169 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 215
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIAYACLYIACRQEGVPRTFK 178
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 72 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 131
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 132 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 188
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 189 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 235
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 177
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 177
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 114 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 173
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 174 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 230
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 231 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 277
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKICCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL LSTVI GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 69 PENPLLNGADLSTVIGPGTGAA-SFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 128 NLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 177
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSFDRAMMNAFKEIASMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C T ++ DH GD VC+ECGLVLE IDETSEWRTF++ + G DP R GPT
Sbjct: 18 ICKNCNVPTAIIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +LA GGL T I + P+G + +L R NRG+NPD+ LI AF I ++D LG+
Sbjct: 78 NRMLAHGGLGTSIGRNPDGTYNQ----TLTRLHNRGANPDKALIAAFGKINELADHLGVT 133
Query: 123 ATIKDRANEIYKK-VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +KD A ++Y+ V+ S G++Q+A+ AACLYI+CRQE RT K
Sbjct: 134 SVVKDGACDVYRMVVKPGVSIAGKSQNAMFAACLYISCRQEGTNRTFK 181
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 8 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPL 67
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 68 LSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 125 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 171
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 67 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 126
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL+ LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 127 PENPLLSGSDLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRI 185
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 186 NLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 235
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 107/159 (67%), Gaps = 7/159 (4%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRAN 130
+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N
Sbjct: 83 MIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTN 139
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 140 NLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%), Gaps = 4/165 (2%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +ID SEWRTF+N+ D RVG NPL
Sbjct: 12 CPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGDSQNPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ LST+I +P+G G + ++ NR + N DR LI AF+ I++M+DR+ L
Sbjct: 72 LSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREISSMADRISLPKN 131
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR+N+++K+V D KS RGR DA+ AACLYIACRQE PRT K
Sbjct: 132 IVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFK 176
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ A D +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 172
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 4 TNKICCYAHPDATLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 63
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 64 PENPLLNGADLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRI 122
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT K
Sbjct: 123 NLPKTIVDRANALFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 172
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 180
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRT 175
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L G L+T+I K G S F ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADRINLPRN 135
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 136 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 180
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 42 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 101
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QN S+ DR ++ AFK I TM+DR+ L
Sbjct: 102 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNHRTMSSSDRAMMNAFKEITTMADRINLP 158
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 159 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 205
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 180
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDACLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 134 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 180
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGG N L
Sbjct: 15 CSAHPDAALIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSENAL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I P S F + ++QNR S+ DR L+ AFK I+ M+DR+ L T
Sbjct: 75 LNGTDLSTMIG-PGTGSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLPRT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA+ +ACLYI+CRQE PRT K
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYISCRQEGVPRTFK 178
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+D LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDRDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 172
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 69 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAIMNAFKEITNMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 126 RNIVDRTNTLFKQVYEQKSLKGRCNDAIASACLYIACRQEGVPRTFK 172
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 43 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 102
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 103 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 159
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 160 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 206
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 113/172 (65%), Gaps = 9/172 (5%)
Query: 5 FCSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C ECG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 47 WCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 106
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST I K G SSSL R QN+ + DR L+ AFK I M+D +
Sbjct: 107 INPLLRDSALSTTIGK-----GSRDSSSLNRLQNKSALGTGDRNLLAAFKEIGRMADHMN 161
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT K A
Sbjct: 162 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIA 213
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 134 IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 99/147 (67%), Gaps = 3/147 (2%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL+ G LST+I P
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-PGRGDA 60
Query: 85 EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS 142
F S + ++QNR S+ DR LI AF+ I TM+DR+ L TI DRAN ++K+V D K+
Sbjct: 61 SFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNL 120
Query: 143 RGRNQDALLAACLYIACRQEDKPRTVK 169
+GR DA+ +ACLYIACRQE PRT K
Sbjct: 121 KGRANDAIASACLYIACRQEGVPRTFK 147
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K GA+ F ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSGGDLTTMIGKGTGAAS-FDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 107/169 (63%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC+D H + V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG
Sbjct: 13 FCTD---HPDAVLVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAA 69
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+
Sbjct: 70 ENPLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRIN 128
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI DR+N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 129 LTKTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L + P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LXXXXXXXI--GPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 131
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 132 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 176
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN---ESGDNDPVRVGG 61
C+ C +HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + + G DP R G
Sbjct: 23 ICAKCARHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADPSRTVG 82
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 83 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALISAFHSIGEFADAMG 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++D A ++Y+ V S+ G++ A+ AACLYIA RQE RT K
Sbjct: 139 MNRVVRDGACDLYRMVTSAHSTLGKSNVAMYAACLYIAARQEGMTRTFK 187
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 104/169 (61%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN---DPVRVGG 61
C C HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + D DP R G
Sbjct: 26 ICPKCATHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVG 85
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 86 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALIAAFHSIGEFADAMG 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +KD A ++Y+ V S+ G++ A+ AACLYIA RQE RT K
Sbjct: 142 MNRVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFK 190
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 7/174 (4%)
Query: 1 MTDAFCSDCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVR 58
MT C+ H + ++ D+ AGD +CSECGLV+ +D SEWRTF+NE +DP R
Sbjct: 1 MTREKSVACRHHPDAPLIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATM 115
VG NPLL+ G LST+I KP+G + + R N S DR L+ AF+ I+ M
Sbjct: 61 VGAAQNPLLSGGDLSTLIEKPSGGNADI--EGFARTHNSRSGMSGADRSLMNAFREISIM 118
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+DR+ L I DRAN+++K+V +QKS +GR+ D + +ACLYIACRQE PRT+K
Sbjct: 119 ADRINLPRKIVDRANQLFKQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLK 172
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLT 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DR+N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 131 KTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C +CGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 180
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 5/166 (3%)
Query: 8 DCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H E +V D+ AGD +CSECGLV+ +D SEWRTF+N+ DP RVG N
Sbjct: 13 NCPSHPEATLVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGESENS 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
LL+ LST+I KP G +G F ++ N+ + + DR L+ AF+ IA M+DR+ L
Sbjct: 73 LLSGSNLSTIIGKPTGNAG-FNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINLPK 131
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DR N ++K+V +Q++ RGR+ DA+ AACLYIACRQE PRT K
Sbjct: 132 TIVDRTNTLFKQVHEQRTLRGRSNDAIAAACLYIACRQEGVPRTFK 177
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+ AGD +CSECGLV+ +D +EWRTF+NE D D RVG NPL
Sbjct: 18 CPEHPDAHLIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAENPL 77
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I++P+G++G F ++ NR S+ DR L+ AF+ I M+DR+ L
Sbjct: 78 LSGGDLSTMISRPSGSAG-FNEDGSAKYHNRRSMSSSDRALVNAFREITGMADRINLPRN 136
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR ++K+V DQKS +GR+ DA+ AACLYIACRQE PRT K
Sbjct: 137 IVDRTQMLFKQVNDQKSLKGRSNDAISAACLYIACRQEGVPRTFK 181
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLT 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 131 KTIVDRANLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFK 177
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 12 CYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGPENPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L L T+I P F + ++QNR S+ DR LI AF+ I M+DR+ L T
Sbjct: 72 LNGSDLCTMIG-PGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRINLPKT 130
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR DA+ +A LYIACRQE PRT K
Sbjct: 131 IVDRANNLFKQVHDGKNLKGRANDAIASAALYIACRQEGVPRTFK 175
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG NPLL L+T
Sbjct: 21 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 80
Query: 75 VIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L TI DRAN +
Sbjct: 81 MIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANLL 139
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 140 FKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFK 176
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 19/185 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG---DNDPVRVGG 61
+C+DC + TEVV DH GDT+C++CG+VL+ H IDE EWR F ++S D DP RVG
Sbjct: 11 YCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCRVGS 70
Query: 62 PTNPLL-ADGGLSTVIAK-----------PNGASGEFLSSSLGRWQNRGSNPDRGLILAF 109
+P L DG LST I + A+ L + G PD L+ AF
Sbjct: 71 AGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMM--LDVGGPAPDTALVDAF 128
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRG-RNQDALLAACLYIACRQEDKPRT 167
+ IA M+DRLGLVATI+D A + +K++E+ K RG R++DA+ AACLY+ACR+E PRT
Sbjct: 129 RGIADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMPRT 188
Query: 168 VKGTA 172
K A
Sbjct: 189 YKELA 193
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 104/171 (60%), Gaps = 31/171 (18%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+P L D T IA S P +G IA M+DRLGL
Sbjct: 70 RADPFLPDHVGGTTIAY-------------------SSAPPKG-------IADMADRLGL 103
Query: 122 VATIKDRANEIYKKVEDQKSS---RGRNQDALLAACLYIACRQEDKPRTVK 169
VATI+DRA E++KK+ + + RGRN+DA+ AACL+IACR E PRT K
Sbjct: 104 VATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYK 154
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC D H E ++ D+ AGD +C +CGLV+ +D +EWR F NE NDP RVG
Sbjct: 12 FCPD---HPEANLIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAA 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I + G F S ++ NR S+ DR LI AF+ I+ M DR+
Sbjct: 69 ENPLLNGSDLSTIIGRGTG-DASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRIN 127
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I DR+N ++K+V D +S +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 128 LTRNIIDRSNALFKQVHDGRSLKGRSNDAIASACLYIACRQESVPRTFK 176
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C CK +VV D++ GD +C CG V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 27 CPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNRVGGPN 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL +GGLSTVI K G LS R QNRG+ + DR L+ AFK I MSD +GL
Sbjct: 87 NPLLREGGLSTVIGKGTGKDASVLS----RMQNRGALGSGDRSLLAAFKEIEKMSDHIGL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
T++D A E++++++D+K +G++ D +LAA LY+ACR + RT K
Sbjct: 143 PQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIARTFK 190
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRV 59
M FC C+ V F S GD VC +CG V ES IDE SEWRTF+++ D DP RV
Sbjct: 1 MDTEFCITCRGDDFVEF-KSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRV 59
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GGPTN LL GL+T I + G LS +L R R +NPDR L+ AFK + M D L
Sbjct: 60 GGPTNHLLE--GLTTTIGRERNDGG--LSYALNRIHARTNNPDRLLVNAFKEVGRMCDLL 115
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
G+ +KDRA EIYK+V + KS +GR+ AL A+CL+ ACRQE +PRT K
Sbjct: 116 GVRGAVKDRACEIYKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRTFK 165
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTN 64
C+DC ++ V DH+ GD VC+ CGLV ESH IDE+SEWR F ++ GD DP RVGGPTN
Sbjct: 12 CADCGS-SDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGGPTN 70
Query: 65 PLLADGGLSTVIAKP-NGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
LL + GLSTVI P GAS L+ +L R +GSNPD+ L+ AF I+ + + LGL
Sbjct: 71 HLLTN-GLSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALGLNR 129
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
KDR NE++K +++ RG+ A+ AA IACRQ PRT K
Sbjct: 130 ACKDRGNELFKNTWEKRGIRGKGIAAVCAAVTLIACRQVGFPRTFK 175
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMN 136
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT K A
Sbjct: 137 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIA 188
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 112/176 (63%), Gaps = 9/176 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA--NESGDNDPVRVGGP 62
+C +C + TEV+ DH+ GDT+C+EC LVL++H IDE SEWR FA D DP RVG
Sbjct: 14 YCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRVGAS 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFL-SSSLGRWQNRGSNP----DRGLILAFKTIATMSD 117
+P L + LSTVI N +S + +++L R R ++ + L+ F+ IA M+D
Sbjct: 74 GDPFL-NAKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADMAD 132
Query: 118 RLGLVATIKDRANEIYKKVEDQKSS-RGRNQDALLAACLYIACRQEDKPRTVKGTA 172
RLGLVATI+D A E +KK+ D K S RGR +DA+ AACLYIACR PRT K A
Sbjct: 133 RLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGMPRTYKELA 188
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 10/168 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSEC-GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H + + D+ AGD +C C GL++ ID SEWRTF+N+ DP RVG NP
Sbjct: 15 CPNHPDAILVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNP 74
Query: 66 LLADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGL 121
LL++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LLSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 179
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I M+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVK 169
S +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 119 SLKGRSNDAIASACLYIACRQEGVPRTFK 147
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H ++ D AGD +C ECGLV+ ID SEWRTF+N+ + DP RVG NP
Sbjct: 19 CCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENP 78
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
LL LST+I G AS S R ++ S+ +R LI AF+ I M+DR+ L T
Sbjct: 79 LLEGNDLSTIIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRINLPKT 138
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRA+ ++K+V DQ++ RGR+ DA+ AACLYIACRQE PRT K
Sbjct: 139 IVDRAHTLFKQVNDQRTLRGRSNDAIAAACLYIACRQEGVPRTFK 183
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSE GLV+ +D SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHADALLVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+ G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSGGDLTTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 7/149 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVK 169
S +GR DA+ +ACLYIACRQE PRT K
Sbjct: 119 SLKGRANDAIASACLYIACRQEGVPRTFK 147
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 7/149 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVK 169
S +GR DA+ +ACLYIACRQE PRT K
Sbjct: 119 SLKGRANDAIASACLYIACRQEGVPRTFK 147
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 103/165 (62%), Gaps = 4/165 (2%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+SAGD VC ECGLV+ ID SEWRTF+NE +DP RVG NPL
Sbjct: 38 CPRHPQANLIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASENPL 97
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L L+TVI K S + ++NR + DR L+ AF+ IATM+DR+ L T
Sbjct: 98 LNGSDLTTVIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRINLPKT 157
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRA ++K+ + KS +GR+ DAL +A LYIACRQE PRT K
Sbjct: 158 IVDRAKVLFKQGYELKSLKGRSNDALASASLYIACRQEGVPRTFK 202
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DC + ++ V DH++GD VC CG+V+E+H IDE SEWRTFA++ SG +DP RVGGP
Sbjct: 16 CPDCGQ-SDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPV 74
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLV 122
N LL+DGG+ST+I G + + G W G DR +I AF+ I + + L+
Sbjct: 75 NHLLSDGGMSTMIGGGKGVDHALVREAGGCWPAGDGVTTDRAVIAAFREIGKICAAMKLL 134
Query: 123 ATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDKPRTVK 169
T+K +A E YK+ D KS +G++Q A+LAA +++ACR PRT K
Sbjct: 135 DTVKKQAEEFYKQAYDNAKSIKGKSQAAVLAAIVFLACRHTGNPRTFK 182
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 101/165 (61%), Gaps = 4/165 (2%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD VC ECGLV+ ID SEWRTF+NE D RVG NPL
Sbjct: 22 CNDHPDAHLIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPL 81
Query: 67 LADGGLSTVIAKPNGASGEFLS-SSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVAT 124
L LS+ IA G G S S ++ G S D+ L+ AFK IA M+DRL L +
Sbjct: 82 LDGHELSSFIAPVTGRPGTNDSGKSFPKFSKSGVSAGDKSLMTAFKEIANMADRLNLPRS 141
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V D+K+ +GR DA+ AACLYIACRQED PR+ K
Sbjct: 142 IVDRGNALFKQVNDEKTLKGRANDAVAAACLYIACRQEDVPRSFK 186
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +D +EWRTF+N+ D DP RVG NPL
Sbjct: 16 CTEHPDAPLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASENPL 75
Query: 67 LADGGLSTVIAKPNGAS-GEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L G LST+IA G S G ++NR + + DR LI AF+ I M DRL L
Sbjct: 76 LEGGDLSTMIATGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLNLPR 135
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V + K+ +GR+ DA+ +AC+YIACRQE PRT K
Sbjct: 136 MIADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTFK 181
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 7/167 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGGPTN 64
C++H + ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ G N DP RVGG N
Sbjct: 8 CQQHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPSRVGGAEN 67
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL LST++ P+ F +++N+G + +R L+ A++ I M+DR+ L
Sbjct: 68 PLLNGSDLSTLVG-PSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMADRINLP 126
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA+ +A LYIACRQE PRT K
Sbjct: 127 RNIVDRANVLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFK 173
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGNLVTVIEKPKENVSSVVSKDDISTLCRTQNQVKNHEEDLIKKAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKV---EDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
M+D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+K
Sbjct: 121 RMTDALYLNIAVNSRACEIVSKFGGHANTKLRRGKKLYAVCAASVSMACRELKLSRTLKE 180
Query: 171 TA 172
A
Sbjct: 181 IA 182
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVGGP N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGGPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL L T+IA G S +L R Q + + P+R LI F I+ DR +
Sbjct: 69 PLLGTEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNIS 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DRA I+K+V+++K +G+N + ++AAC+YIACRQE PRT K
Sbjct: 125 KTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFK 171
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
M+D L L I RA EI K + + K RG+ +A+ AA + ACR+ RT+K
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 171 TA 172
A
Sbjct: 181 IA 182
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
M+D L L I RA EI K + + K RG+ +A+ AA + ACR+ RT+K
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 171 TA 172
A
Sbjct: 181 IA 182
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 98/164 (59%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LTGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+D A+ I+K V D ++ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QDNASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGDLVTVIEKPKENISSVVSKDDLSTLCRAQNQLKNHEEDLIKKAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKV---EDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
++D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+K
Sbjct: 121 RITDALYLDIVVHSRACEIVSKFGGHANTKLRRGKTLYAVCAASVSMACRELKLSRTLKE 180
Query: 171 TA 172
A
Sbjct: 181 IA 182
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D AGD +CSECGLV+ +D SEWRTF+NE+G+ DP RVGG N L
Sbjct: 10 CPSHPDAPLVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAENTL 69
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGR-WQNRG--SNPDRGLILAFKTIATMSDRLGLVA 123
L L+T+I G + + G ++NR S+ DR L+ AFK I+ M+DR+ L
Sbjct: 70 LNGTNLTTMIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRINLPR 129
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DRAN ++K V D K+ +G + DA +ACLYIACRQE PRT K
Sbjct: 130 TIVDRANLLFKSVHDGKNLKGHSTDASASACLYIACRQEGVPRTFK 175
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVG P N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGCPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL L T+IA G S +L R Q + + P+R LI F I+ DR +
Sbjct: 69 PLLESEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNIS 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI DRA I+K+V+++K +G+N + ++AAC+YIACRQE PRT K
Sbjct: 125 KTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFK 171
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 99/167 (59%), Gaps = 5/167 (2%)
Query: 8 DCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+CK H V D AGD VCS CGLV+ ID SEWRTF+N++ D RVG N
Sbjct: 5 ECKYHPYAVLIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENF 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
LL G LST+I+ P+ + L + R + S PDR L+ AF+ I+ M + L L
Sbjct: 65 LLDGGDLSTMISGPSPSDSRQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLP 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+I D AN ++K+V + K+ RGR+ DA+ ACLY+ACRQE PRT K
Sbjct: 125 KSISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVPRTFK 171
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 10/149 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C +C + ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 16 LCYDC---VGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 72
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 73 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 129
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVK 169
S +GR DA+ +ACLYIACRQE PRT K
Sbjct: 130 SLKGRANDAIASACLYIACRQEGVPRTFK 158
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 7/169 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVGGP+
Sbjct: 29 ICPDCRDPNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGGPS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+PLL G L T+I+ +G SG ++ L R +R N +R L+ AF+ I++ D+
Sbjct: 88 DPLLEGIGQLDTIISFRDGGSG--MARELQRAASRAQNTRSERNLLSAFRDISSWCDQFS 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 146 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 194
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPL LST+I+ P+ +
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L L R + S PDR LI AF+ I+ M++RL L TI DRAN ++K+V + ++
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLNLPKTISDRANLLFKQVYETRN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVK 169
RGR+ DA+ ACLY+ACRQE PRT K
Sbjct: 122 LRGRSNDAVSTACLYMACRQEKVPRTFK 149
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 92/136 (67%), Gaps = 7/136 (5%)
Query: 38 IDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQ 95
ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S ++Q
Sbjct: 28 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS---KYQ 84
Query: 96 NR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAA 153
NR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +A
Sbjct: 85 NRRTMSSSDRAMMNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 144
Query: 154 CLYIACRQEDKPRTVK 169
CLYIACRQE PRT K
Sbjct: 145 CLYIACRQEGVPRTFK 160
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C+ H + D+ AGD +C+ECGLV+ ID SEWRTF+N+SG D RVG N
Sbjct: 13 CQYHPDAHLAEDYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDVENRF 72
Query: 67 LADGG--LSTVIAKP-NGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
L++ G LST+IA P NGA F S+L + + DR L A++ I M+DR+
Sbjct: 73 LSNSGSDLSTMIAAPTNGAETAF--SNLSHHRRHMNAADRALSAAYREIGAMADRMNFPG 130
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ DRA +K+ + + +GR+ DA+ AACLYIACRQE PRT K
Sbjct: 131 SLVDRAKVNFKEAYESRQLKGRSNDAIAAACLYIACRQEGVPRTFK 176
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 7/136 (5%)
Query: 38 IDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQ 95
ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S ++Q
Sbjct: 6 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS---KYQ 62
Query: 96 NR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAA 153
NR S+ DR ++ AF+ I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +A
Sbjct: 63 NRRTMSSSDRAMMNAFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 122
Query: 154 CLYIACRQEDKPRTVK 169
CLYIACRQE PRT K
Sbjct: 123 CLYIACRQEGVPRTFK 138
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 153 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 212
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL LST IA G S S + + +N +N DR + I MS R+ L +I
Sbjct: 213 LLGSADLSTSIAVGFGGSESDYSLANAQRKNM-NNMDRQMSQGLSVIREMSARIHLPKSI 271
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT K
Sbjct: 272 EDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFK 315
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT
Sbjct: 135 PKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRT 180
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 98/171 (57%), Gaps = 9/171 (5%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 4 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 63
Query: 66 LLADGGLSTVIAKPNGASG----EF--LSSSLGRWQNRG-SNPDRGLILAFKTIATMSDR 118
LL LST IA G S +F L SL Q + +N DR + I MS R
Sbjct: 64 LLGSADLSTSIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSAR 123
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ L +I+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT K
Sbjct: 124 IHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFK 174
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNG-AS 83
+CS CGLV+ ID SEWRTF+NE D RVG NPLL LST+I+ G AS
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 84 GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSR 143
+ + R + + ++ DR ++ AFK I MSDRL L I DRAN ++K+V + KS +
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMIMDRANTLFKQVHEGKSLK 121
Query: 144 GRNQDALLAACLYIACRQEDKPRTVK 169
GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 122 GRSNDAIASACLYIACRQEQVPRTFK 147
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK+ +V + S+GDTVC CGLV+ +D SEWRTFAN+ G ++ RVG
Sbjct: 23 ICPDCKEDPPNLVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSA 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
NPLL L T+I+ +G G LS + GR + +R L+ A++ I+ M D + L
Sbjct: 83 NPLLNGSQLDTIISTQDGGHG--LSKTQGRSVVQKG--ERNLMSAYREISAMCDAIHLPK 138
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+I D A +++K+V+D K+ +GR+ +++++AC++IACRQ PRT K
Sbjct: 139 SISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAPRTFK 184
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 3/138 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF--ANESGDNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF A D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DRL LV
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 ATIKDRANEIYKKVEDQK 140
ATI+DRA E++KK+E+ K
Sbjct: 130 ATIRDRAKELFKKMEEAK 147
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C++ T ++ + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG T
Sbjct: 19 ICPECREATPDIREEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAT 77
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+PLL L TVI+ +G SG ++ L R R GS +R ++ AF+ I+T D+
Sbjct: 78 DPLLEGIEQLDTVISFRDGGSG--VARELQRAATRAQGSRSERNILTAFRDISTRCDQFA 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+V D+ +G+ Q+A+ AAC++IACRQ PRT +
Sbjct: 136 LPKTISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFR 184
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 14 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 73
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL LST IA G S + +N DR + I MS R+ L +I
Sbjct: 74 LLGSADLSTSIAVGFGG------SETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSI 127
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT K
Sbjct: 128 EDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFK 171
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL +D SEWRTF+N + + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +G +G L+ + GR Q RG ++ L+ A+K I+ M D + L
Sbjct: 79 ANPLLNGSQLDTSISSTDG-TGAMLAKAQGRSVQVRG---EKNLLTAYKEISAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
I D A +++K+V+D K+ +G++ +++AAC+YIACRQ PRT
Sbjct: 135 PKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRT 180
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 ICKDCKEVPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L+T I+ +G S S L R QN+ SN + L+ A+K I D +
Sbjct: 84 ANPLLNGSQLTTSISFQDGNS---RSRDLMRTQNKSSNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++ D A ++KKVED K+ +G++Q+A++A C++IACRQ PRT +
Sbjct: 141 LSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFR 189
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 ICKECKEFPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
NPLL LST IA +G SG S L R QN+ ++ D+G L+ A+K I D +
Sbjct: 84 ANPLLNGSQLSTTIAFGDG-SGR--SRDLQRAQNKSAH-DKGTKNLLAAYKEIGAHCDAI 139
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
G+ T D A ++K V+D K+ +G++Q+AL+A C++IACRQ PRT +
Sbjct: 140 GIPKTGADVAKHLFKMVDDAKAFKGKSQEALIAGCIFIACRQSGVPRTFR 189
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + ++V + ++GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECKDPNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
+PL+ DG L TVI+ +G SG +S L R +R S +R L+ AF+ I+ D+
Sbjct: 90 DPLM-DGMEQLDTVISFRDGGSG--ISRELQRAASRAQSSRTERNLLTAFRDISNWCDQF 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PR+ K
Sbjct: 147 SLPKTISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFK 196
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P +P
Sbjct: 7 CPHHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPY 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G ++L Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTSIAV--GFGGSDSDNTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ A ++K+V D RG+N +A AACLYIACRQ+ PRT K
Sbjct: 125 QESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFK 168
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 10/169 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DC+ E+ DH++GD +C+ECGLVL+ ID +SEWRTF+N + G++DP RVG
Sbjct: 33 CKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLG 120
N LL L+T IA +G S L R QN+ SN D+G L++A+K I + D
Sbjct: 93 NALLNGAQLNTSIAFGDG----IRSKELHRAQNK-SNLDKGNKTLLVAYKQIGALCDNWD 147
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + + D A +YK ++ + +G++Q+AL+A C+++ACR+ + PR+ +
Sbjct: 148 LPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVPRSFR 196
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG ++ L R +R S +R L+ AF+ IA+ D+
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSG--IARELQRAASRSQASRSERNLLQAFRDIASWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFR 195
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 30 ICPDCRDPSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAI 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG L+ L R +RGS +R L+ AF+ I++ D+
Sbjct: 89 DPLMEGVEQLDTTISFKDGGSG--LARELQRAASRGSASRSERNLLQAFRDISSWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACR+ PRT +
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFR 195
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 29 CGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTNPLLADGGLSTVIAKPNGASGEFL 87
CG V ES IDE SEWRTF+++ D DP RVGGPTN LL GL+T I + G L
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLE--GLTTTIGRERNDGG--L 60
Query: 88 SSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
S +L R R +NPDR ++ A K + M + L + T+KDRA EIYK+V + K+ +GR+
Sbjct: 61 SYTLNRIHARTNNPDRVIMAAMKEVGRMCELLKVNGTVKDRALEIYKEVVEAKTLKGRSV 120
Query: 148 DALLAACLYIACRQEDKPRTVK 169
AL A+CL+ ACRQE + RT K
Sbjct: 121 KALAASCLFWACRQEKQARTFK 142
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKKEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I+ +G + S SL + Q + S P+R LI I +R L
Sbjct: 73 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSK 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++K VE++K +G+N + + AAC+YIACRQ RT K
Sbjct: 129 TISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFK 174
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 6/169 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +ID SEWRTF+N+ G++DP RVG
Sbjct: 36 ICKDCKEFPPNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDS 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T I+ +G SG + L R QN+ ++ + L+ A+K I D
Sbjct: 96 ANPLLNGNQLDTGISFSDGGSGR--ARDLHRAQNKVTHDKSTKSLLAAYKEIGAFCDSTN 153
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A ++YK V+D K+ +G+ Q+ ++A C++IACR+ + PRT +
Sbjct: 154 LQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFR 202
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC++ E+ DH++GD +C CGLVL+ SID +SEWRTF+N+ G++DP RVG
Sbjct: 32 ICRDCREDPPELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDPSRVGDG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
N LL L+T IA +G S L R QN+ ++ ++ L+ A+K I + D
Sbjct: 92 PNALLNGAQLNTNIAFGDGG---MRSKELHRAQNKANHDKSNKLLLQAYKQIGALCDGWA 148
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L T+ + A IYK ++ + +G++Q+AL+A C++IACR+ + PRT +
Sbjct: 149 LPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVPRTFR 197
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C+DC + ++ DH +G VC CG+VL + IDETSEWR F +S +DP RVG +N
Sbjct: 13 ICTDCGETQNIIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNF-EDSHKSDPSRVGSASN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
P L L T+I+ G + LS + RG P R L I +R + T
Sbjct: 72 PFLDSEQLDTMISAGKGMNSHTLSKIQMKNYMRG--PKRALKNGLNLIQAFCERSNICKT 129
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRA I+K VE QK +G+N + + ACLYIAC+ E+ PRT K
Sbjct: 130 ICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFK 174
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG V+ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT K
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFK 174
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + +V + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG +
Sbjct: 29 ICPECKDPNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDEGD-DPSRVGAAS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+PLL L TVI+ +G SG ++ L R +R N +R L+ AF+ I+ D+
Sbjct: 88 DPLLEGIEQLDTVISFRDGGSG--IARELQRAASRSQNNRSERNLLTAFRDISNWCDQFS 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACR+ PRT +
Sbjct: 146 LPKTISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFR 194
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGVNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT K
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFK 174
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 97/168 (57%), Gaps = 8/168 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C +CK + E+V HS GD VC+ CGLVL S ID SEWRTFAN ++GD DP RVG
Sbjct: 18 VCPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGD-DPSRVGE 76
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
TN L LSTVI+ G G + L R QNR D L A+ I+ + D
Sbjct: 77 ATNGALDSDQLSTVISA--GVDGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQLCDGY 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L ++D A E+YK V D K RG++Q+A++AA ++ CR+ D PRT
Sbjct: 135 QLPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRT 182
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 7/168 (4%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ + ++ + +GD VC CGL+L +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 CPECRDPNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 90
Query: 65 PLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
PL+ + TVI+ +G SG ++ L R +R N +R ++ AF+ I++ D+ L
Sbjct: 91 PLMEGMEQMDTVISYKDGGSG--VARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG++ DA++AAC++IACRQ PRT +
Sbjct: 149 PKTISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFR 196
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CTDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTIISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT K
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFK 174
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT K
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFK 174
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 10/170 (5%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DC++ +V + S+GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 19 MCPDCREVPANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGD-DPSRVGD 77
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
NP L L T I+ G +G L R QN+ G +GL+ A+K I D +
Sbjct: 78 AANPFLNGAQLETTISYTPGGAGR----ELHRAQNKTAGDKSTKGLLAAYKEIGAFCDSI 133
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D A +++K V+D K+ +G+ Q+A++A C++IACRQ PRT +
Sbjct: 134 NIQKVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFR 183
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ ++V + +GD VC+ CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 29 ICPDCRDPVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAQ 87
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
+PLL + L+T I +G +G ++ L R +RG N +R + AF+ I+ M D
Sbjct: 88 DPLLDEQDQLATAIGFRDGNTG--VARELQRAASRGMNGARSERSIQTAFREISNMCDSF 145
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +I D A ++YK+ +++K R ++ DA++AAC++IACRQ PRT +
Sbjct: 146 SLPKSISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFR 195
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK +V +S+GD VC CG+VL ID SEWRTFANE GD DP RVG +
Sbjct: 31 ICPECKDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRW--QNRGSNPDRGLILAFKTIATMSDRL 119
+PL+ DG L TVI+ +G SG L+ L R + + + ++ FK I+ D +
Sbjct: 90 DPLM-DGMEQLDTVISFQDGGSG--LARELQRASAKTQAFKDGKTMMEGFKKISQFCDSI 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I D A ++YK+VE+ + +G+ DA++AAC++IACRQ PRT +
Sbjct: 147 SLPKVISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFR 196
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG L+ L R +R S +R L+ AF+ I+ D+
Sbjct: 89 DPLMEGIEQLDTTISFKDGGSG--LARELQRAASRANSSRSERNLLQAFRDISNWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 195
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKEEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I+ +G + S SL + Q + S P+R LI I +R L
Sbjct: 73 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSK 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++K VE++K +G+N + + AAC+YIACRQ RT K
Sbjct: 129 TISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFK 174
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 96/165 (58%), Gaps = 27/165 (16%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L T
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 111 IVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 155
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L + R + S PDR L+ AF+ I+ M + L L +I D AN ++K+V + K+
Sbjct: 62 RQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVK 169
RGR+ DA+ ACLY+ACRQE PRT K
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFK 149
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG V+ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 11 CPDCKEEENIIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 68
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I+ +G + S SL + Q + S P+R LI I +R L
Sbjct: 69 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSK 124
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++K VE++K +G+N + + AAC+YIACRQ RT K
Sbjct: 125 TISDAAKYVFKTVENKKVLKGKNLEGIGAACIYIACRQAGFVRTFK 170
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L + + R + S PDR L+ AF+ I+ M + L L +I D AN ++K+V + K+
Sbjct: 62 RQLDENGKPMYRNRRNMSAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVK 169
RGR+ DA+ ACLY+ACRQE PRT K
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFK 149
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 7/169 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECRDPNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLG 120
+PL+ L TVI+ +G SG ++ L R +R N +R ++ AF+ I + D+
Sbjct: 90 DPLMEGMEQLDTVISFRDGGSG--IARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFS 147
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 148 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 196
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 7/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC+ CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 MCKDCKEYPPNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
N LL L T IA +G + S L R Q + N + L+ A+K I D +
Sbjct: 84 PNVLLNGSQLQTTIAYGDGNA---RSRDLLRAQGKTGNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D A ++K+V+D K+ +G++QDA++A C++IACRQ + PRT +
Sbjct: 141 IPKNVSDTAKYLFKQVDDGKAFKGKSQDAIIAGCIFIACRQCNVPRTFR 189
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 10/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC+ E+ DH++GD +C+ CGLVL +ID SEWRTF+N+ G++DP RVG
Sbjct: 32 MCKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDPSRVGEG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRL 119
N LL L T IA +G S L R QN+ SN D+ GL+ A+K I + D
Sbjct: 92 PNTLLNGAQLETGIAFGDG----IRSRELHRAQNK-SNMDKTNKGLLQAYKQIGALCDGW 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +++ D A +YK ++ + RG++Q+AL+A C+++ACR+ + PR+ +
Sbjct: 147 QLPSSVSDTAKHLYKDADESRLFRGKSQEALIAGCVFLACRRNNVPRSFR 196
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A I+K D +G+ Q+A++A C++IACRQ RT +
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFR 191
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A I+K D +G+ Q+A++A C++IACRQ RT +
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFR 191
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 5 FCSDCKKHTEVV--FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
C H ++ +D+ + D +C ECGLV+E D SEWRTF+ E+G+ DP ++G
Sbjct: 11 ICCPSHPHYPLIAHYDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGEE 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMSD 117
N LL L+T+ G L+ S +GR +NR S+ D+ L+ A+ I+ M+
Sbjct: 71 ENTLLDGSNLTTMFGPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMAV 130
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ L T+ DRAN ++K V D K +G + A+ + CLYIACRQE PRT K
Sbjct: 131 NINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFK 182
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + ++ D+ AG VCS CG V+ + IDE SEWR F++ + N RVG NP
Sbjct: 8 CKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFSDANAPNLS-RVGSANNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL T+I+ + G LS + R RG P++ LI F I+ + DR + TI
Sbjct: 67 LLDAETYDTIISTERSSFGVNLSKTQMRSSMRG--PEQALINGFNLISALCDRANMTKTI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA +K VE++K ++ ++ +AAC+YIACRQE PRT K
Sbjct: 125 CDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFK 168
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 5/168 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+PL+ DG L T I+ +G SG ++ S +R L+ AF+ I+ D+ L
Sbjct: 89 DPLM-DGMEQLDTTISFRDGGSGLARELQRAASRSSASRSERNLLQAFRDISNWCDQFSL 147
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +
Sbjct: 148 PKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFR 195
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPLL+ LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 EFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
+ +L + + S+ DR L AF+ I M++ L L +I D AN ++K+V + K+
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHLNLPKSISDHANLLFKQVYETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVK 169
RGR+ DA+ ACLY+ACRQE PRT K
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFK 149
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPDCRDPNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PL+ L TVI+ +G SG +++ S +R ++ AF+ I++ D+ L
Sbjct: 90 DPLMEGIEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLP 149
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +
Sbjct: 150 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFR 196
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D+ G VC+ECG + IDE SEWR F + DP RVGGP NP
Sbjct: 11 CPNCGEDKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNP 70
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I SG+ SL R Q + + P+R LI F + DR G+
Sbjct: 71 FLETDVLDTII------SGK---DSLARTQMKSTMRGPERALINGFNLLTNYCDRNGIAM 121
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I+DRA I K V ++K ++G+N +A+ AACL++AC+ PRT K
Sbjct: 122 VIQDRAKTILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFK 167
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 101/165 (61%), Gaps = 8/165 (4%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPTNPLL 67
C+ ++ DH++GD +C CGLVL+ SID +SEWRTF+N+ G++DP RVG N LL
Sbjct: 37 CEDPPDLREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPNALL 96
Query: 68 ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLGLVAT 124
L+T IA +G + L R QN+ +N D+G L+ A+K I + D L +T
Sbjct: 97 NGAQLNTNIAFGDGG---MKAKDLHRAQNK-ANLDKGNKSLLQAYKQIGALCDGWQLPST 152
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A +YK E+ + +G+ QDAL+A C+++ACR+ PR+ +
Sbjct: 153 VSDTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVPRSFR 197
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 231 MCPDCKEYPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 290
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 291 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 346
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A I+K D +G+ Q+A++A C++IACRQ RT +
Sbjct: 347 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFR 395
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGG 61
C DCK +V D SAGD +C CGL+L + ID SEWRTF+N S DN DP RVG
Sbjct: 31 ICRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSN-SDDNSGDPSRVGA 89
Query: 62 PTNPLLADGGL--STVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
++P+L G ST+I +G +G + G + L+ AFK I M +R+
Sbjct: 90 ASDPILGSKGTIDSTIIGVRDGGTGRSRELHRAHLKVIGQKGEVALLQAFKVIQAMGERI 149
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A +++KK +D++ + + +A++AACLYIACR+ RT +
Sbjct: 150 SLSKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVTRTFR 199
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 8/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +++ + S+GD VC+ CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 37 MCPDCKEYPPDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGP 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN + +GL+ A+K I + + +
Sbjct: 97 QDEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETIH 152
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 153 MGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 201
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 ICPDCRDPNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 90
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PLL L TVI+ +G SG +++ S +R L+ AF+ I D+ L
Sbjct: 91 DPLLEGMEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLP 150
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 151 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 197
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAINM 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 138 GQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFR 185
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAINM 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 138 GQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFR 185
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ + ++V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+NP
Sbjct: 29 CPDCRTY-KLVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LL-ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGLV 122
LL T+I+ +G +G ++ L R R + ++ + AF +I M D + L
Sbjct: 87 LLNGVETFETIISFKDGNTG--VARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISLP 144
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
T+ D A +++++ +++K RG+ DA++AAC++IACRQ R+ K
Sbjct: 145 RTVTDIAKQLFRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRSFK 191
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAV 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G+
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGWGI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A ++K V+D K+ +G++QD ++A C++IACRQ + PRT +
Sbjct: 141 QKNVADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQ 188
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 10/172 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW---RTFANESGDNDPVRVG 60
C +CK + ++V + +GD VC +CGLVL +D SE TFAN+ GD DP RVG
Sbjct: 30 ICPECKDMNPKIVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDEGD-DPSRVG 88
Query: 61 GPTNPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSD 117
TNPLL L TVI+ +G SG ++ L R RGS +R ++ AF+ I+ M +
Sbjct: 89 AATNPLLEGIEQLDTVISFKDGGSG--MARELQRAAARGSVGKNERNMMTAFRDISAMCE 146
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ L + D A ++YK+ E++K RG++ DA++A C+ IACRQ + PRT K
Sbjct: 147 SISLPKNVSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFK 198
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 32 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 91
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN + +GL+ A+K I + + + +
Sbjct: 92 DEFVEGQHLATTVAFSESKAHKALS----RTQNNANADKAQKGLMQAYKEIVALCETINM 147
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 148 GANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 195
>gi|357155150|ref|XP_003577025.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 293
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 13/175 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF---ANESGDNDPV 57
M ++C DC T +VFD ++GDT+CSECGLVL+SH I+E + TF A++ + DP
Sbjct: 1 MESSYCKDCNLSTVIVFDRASGDTICSECGLVLDSHYIEEKANPHTFTHFASKDDNYDPF 60
Query: 58 RVGGPTNPLLADGGLSTVIAKPNGASGEF---LSSSLGRWQNRGSNPDRGLILAFKTIAT 114
VG T+ L + + + + F L S+ + ++ N AF IA
Sbjct: 61 CVGDSTSNLESKHDSTILWPEVFDNRRSFCGNLQKSVDFYSHQSDN-------AFNYIAD 113
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+DRLG+V +I+ +A IYKK ++ K R + ++ AACLYIACRQ +K RT+K
Sbjct: 114 MADRLGIVDSIQTQAKNIYKKAKEHKLFNIRKKHSVCAACLYIACRQANKVRTIK 168
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 24 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN + +GL+ A+K I + + + +
Sbjct: 84 DEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETIHM 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 140 GANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 187
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DCK+ ++ + S+GDTVC CGLVL + +D SEWRTF+N ++GD DP RVG
Sbjct: 30 ICPDCKEQPPNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGD-DPSRVGD 88
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRL 119
NPLL L+T I+ +GA S L R QN+ ++ L+ A+K I DR
Sbjct: 89 AANPLLNGSQLATNISYTDGAK----SRELNRAQNKSGTDKSNKSLMQAYKLIGQWCDRW 144
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L T+ D A +YK +D K +G+ ++++A CL++ACRQ + R+ +
Sbjct: 145 LLPHTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFR 194
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D +
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCDGFNIQ 140
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
T+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT
Sbjct: 141 KTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRT 185
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D +
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCDGFNIQ 140
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
T+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT
Sbjct: 141 KTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRT 185
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D +
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCDGFNI 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 143 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 188
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D +
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCDGFNI 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 143 QKNVADTAKYLFKVVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 188
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 25 ICPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G+
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACR+ PRT
Sbjct: 141 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRT 186
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 11/170 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC+ CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 26 MCPDCKESPPNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDPSRVGEG 85
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA +G + + +L QN+ N D+G L+ A++ I +++D +
Sbjct: 86 PNLMIDGDQLQTAIAY-DGKNAK----NLAHLQNK-INQDKGSKALMAAYRDIQSLTDSI 139
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
A + + A I+K VED K+ +G++Q+A++A C++IACRQ PRT +
Sbjct: 140 NAGAQVANAAKHIFKMVEDNKALKGKSQEAIIAGCIFIACRQTGVPRTFR 189
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 7/169 (4%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ D PRT +
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVPRTFR 187
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC++ ++ DH++GD +C CGLVL+ SID +SEWRTF+N + G++DP RVG
Sbjct: 31 MCRDCREDPPDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDG 90
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N LL L+T IA +G S L R QN+ +N D+G L+ A+K I + D
Sbjct: 91 PNALLNGAQLNTSIAFGDGG---IRSKELHRAQNK-ANLDKGNKTLLQAYKQIGALCDGW 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++ D A I+K ++ + +G++Q+AL+A C+++ACR+ + R+ +
Sbjct: 147 QLPNSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVARSFR 196
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 8/168 (4%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN S +GL+ A+K I ++ + + +
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNASQDKAQKGLMQAYKEIVSLCEAINM 138
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 139 GQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 186
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 6/168 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ ++ + S+GD VC CGLV+ ID SEWRTF+N+ G++DP RVG
Sbjct: 28 ICKDCKEFPPNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N ++ L T IA G + LS + Q++ S + L+ A++ I +++D +
Sbjct: 88 PNLMIDGDQLQTTIAYGEGKNARNLSHLQNKVNQDKAS---KALLQAYRDIQSLTDSINT 144
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + A IYK VED K+ +G++Q+A++A C++IACRQ PRT +
Sbjct: 145 GSQVANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFR 192
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT K
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFK 174
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT K
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFK 174
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT K
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFK 174
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 8/168 (4%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN + +GL+ A+K I ++ + + +
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVSLCEAINM 138
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 139 GQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 186
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 185
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + E++ HS GD VC+ CGLVL H ID SEWRTF N ++GD DP RVG
Sbjct: 30 CPECKVYPPELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGD-DPSRVGEA 88
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+ +L LSTVI+ N G ++ L R Q + D L A+ I+ M D
Sbjct: 89 SASVLDSDQLSTVIS--NSQEGGRVARELNRTQGKSVADKKDHALQTAYAKISQMCDGYQ 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V D K RG++Q++++AA +++ CR+ PR+ K
Sbjct: 147 LPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFK 195
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKITPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D + L
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAVKGERNLVQAYKEIGAMCDSISL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A ++YK+VED+K RG++ DA++AAC++IACRQE RT +
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFR 196
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D + L
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAIKGERNLVQAYKEIGAMCDSISL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A ++YK+VED+K RG++ DA++AAC++IACRQE RT +
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFR 196
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKVLMAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGLV 122
PLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 86 PLLNGNQLETQISYGVGGS---RSRDLHRAQNKMSSEKTNKTLLAAYKEIGALCDGFNIP 142
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 143 KNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R QN+ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQNKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 11/171 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + T + + S+GD VCSECGLV+ +D SEWRTFAN+ G +DP RVG +P
Sbjct: 23 CKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSRVGDAGDP 82
Query: 66 LLADGGLSTVIAKPNG--ASGEFLSSSLGRWQ--NRGSNPDR---GLILAFKTIATMSDR 118
+ DG L T I G ASG +GR N+ + DR GL +F I+ D+
Sbjct: 83 IWNDGSLETKIDTSRGQNASGRI----IGRLNNANKKTQNDRGQAGLQASFAKISEHVDK 138
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A ++K V+D K +G++ +A++A C++IACR + RT +
Sbjct: 139 LQGGKPVLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFR 189
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C +V + S+GDTVC +CG+V+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 21 CPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 80
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN +N D+ GL+ A+K I + + +
Sbjct: 81 DEFVEGQQLATTVAFSETKAHKALS----RTQN-NTNQDKSQKGLMQAYKEIVSYCEAIN 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 136 MGTNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFR 184
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 24 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKSLLAAYKEIGALCDGFSI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 185
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK ++V + GD VC +CGLVL +D SEWRTF+N+ G +DP RVG
Sbjct: 12 MCPECKILPPDIVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDA 71
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL L+T+I+ GA G + L R Q+R D L + I+ + D +
Sbjct: 72 MNPLLEGSQLNTIIS--FGAPGSSVGRDLNRTQSRSLQDKKDAALSAVYAKISQICDGIS 129
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A E+YK V D K RG+ DA++A ++IACR + RT +
Sbjct: 130 LPRVVSDAAKEVYKLVHDDKRLRGKTPDAIIATVIFIACRHANVQRTFQ 178
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 96 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 155
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 156 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 211
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT
Sbjct: 212 QKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRT 257
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGP 62
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 24 VICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDA 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 MNPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGFN 139
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ + D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 140 IQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 186
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGP 62
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 24 VICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDA 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 MNPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGFN 139
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ + D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 140 IQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 186
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRT 185
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + ++ D+ G VC CG V+ + IDE+SEWR+F+ +S DP R G +NP
Sbjct: 35 CTDCGETQNIIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFS-DSNKADPCRTGSVSNP 93
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G S L + RG P+R L I +R + T+
Sbjct: 94 FLDTEQLDTMISSVPGTSSYNLQKIQLKTAMRG--PERSLKHGINLITAFCERANITKTV 151
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA I+K V+D+K +G+N + ++ AC+YIACR E+ PRT K
Sbjct: 152 IDRACLIFKIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFK 195
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 7/169 (4%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ PRT +
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFR 187
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PL+ L T I+ +G SG ++ S +R L+ AF+ IA D+ L
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSGIARELQRAASRSAASRSERNLLQAFRDIAGWCDQFSLP 148
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 195
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 7/169 (4%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 21 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 81 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 137
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ PRT +
Sbjct: 138 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFR 186
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 33/163 (20%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E++ DH AGD +C ECGLV+ +D +SEWR+F+++S DP RVG P N L
Sbjct: 6 CPAHPDAELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGSPENNL 65
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
++ GGL+T IA G S E S SL Q R +
Sbjct: 66 MSGGGLATSIA--GGGSDE--SRSLSNLQKRQA--------------------------- 94
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D+AN ++K+V++ K+ +G+N DA+ +ACLYIACR++ PRT K
Sbjct: 95 DQANLLFKQVQETKALKGKNNDAVASACLYIACRKDGVPRTFK 137
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 101/169 (59%), Gaps = 10/169 (5%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 24 CPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN +N D+ GL+ A+K I ++ + +
Sbjct: 84 DEFVEGQQLATTVAFSESKAHKALS----RTQN-NTNQDKAQKGLMQAYKEIVSLCEAIN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 139 MGQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFR 187
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT +
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQ 174
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 12/170 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C DCK+ +V ++S+GD VC+ CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 29 ICPDCKEEPPNLVEEYSSGDMVCASCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D +
Sbjct: 88 PNLMIDGDQLQTSIAFDGKGA-----KNLAHLQNK-VNQDKGTKALLQAYRDIQALTDSI 141
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
A + + A I+K V+D K+ +G++Q+A++A C++IACRQ + PRT +
Sbjct: 142 NAGAQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFR 191
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DCK + +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 24 CPDCKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ + + L R Q++ D L AF I+ M D
Sbjct: 83 GNPLLDHENLSTMIS--HSPDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQMCDGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V +++ RG++Q++++AA ++I CR+ PRT K
Sbjct: 141 LPKIVQDAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFK 189
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC +CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 ICPECKEDPPHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFR 187
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRLGL 121
NPLL L T IA G + +L R QN+ + + AF+ I+ +D + L
Sbjct: 90 NPLLDGAQLETSIAFSEGRDHK----NLARIQNKSQTDKNTKAIGSAFREISAFTDSINL 145
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A IYK D +G+ Q+AL+A C++IACRQ RT +
Sbjct: 146 GKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFR 193
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRLGL 121
NPLL L T IA G + +L R QN+ + + AF+ I+ +D + L
Sbjct: 90 NPLLDGAQLETSIAFSEGRDHK----NLARIQNKSQTDKNTKAIGSAFREISAFTDSINL 145
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A IYK D +G+ Q+AL+A C++IACRQ RT +
Sbjct: 146 GKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFR 193
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 12 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 70
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 71 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 127
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 128 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 173
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 22 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 82 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCDGFNI 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 138 QKIVADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRT 183
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRT 187
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFR 187
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFR 187
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 9/170 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + VV + S+GD VC +CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 19 ICPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDEGD-DPSRVGAAN 77
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRL 119
NPLL DG T+I+ +G +G +S L R + S+ +RGL+ AF+ I++M+D++
Sbjct: 78 NPLL-DGVDEFETMISSRDGNTG--ISRELQRATAKSSHGRSERGLLNAFRDISSMADQI 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +I D A ++YK+V+++K RG++ DA++AAC++IACRQ PRT K
Sbjct: 135 SLPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFK 184
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 5/158 (3%)
Query: 17 FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI 76
+D+ + D +C+ECG+V++ D SEWRTF+ E+G+ DP ++G N LL L+T+
Sbjct: 25 YDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTIF 84
Query: 77 AKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
G ++ S LGR + R S+ D+ L+ A+ I+ M+ + L T+ DRAN
Sbjct: 85 GPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++K V D K +G + A+ + CLYIACRQE PRT K
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFK 182
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 12/170 (7%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRL 119
+ + L+T +A S +L R QN +N D RGL+ A+K I ++ + +
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQN-NTNQDKQQRGLMQAYKEIVSLCEAI 137
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 138 NMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 187
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ L L T I+ +G SG +++ S +R L+ AF+ I + D+ L
Sbjct: 89 D-LEGIEQLDTAISFRDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPK 147
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +
Sbjct: 148 TISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFR 193
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G SG S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGSGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRT 209
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 12/170 (7%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRL 119
+ + L+T +A S +L R QN +N D+ GL+ A+K I ++ + +
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQN-NTNQDKQQKGLMQAYKEIVSLCEAI 137
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +
Sbjct: 138 NMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFR 187
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 22/187 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES----GDNDPVRVG 60
+C C++ T V + ++GDTVC+EC LVL+ +DE+ EWR F N D P +
Sbjct: 11 YCKGCRRVTTVTVNPASGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHI- 69
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEF-----------LSSSLGRWQNRGSNPDRGLILAF 109
+ L + L T +A P + E + G + P+R L AF
Sbjct: 70 --DDHFLTNLQLGTAVAGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAF 127
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKS----SRGRNQDALLAACLYIACRQEDKP 165
+ + M++RLGL +KDRA E+ +K+ED K+ + RN+ AL AACL++ACR E P
Sbjct: 128 QAMDGMAERLGLATAVKDRAKEVLRKLEDAKAFPKGGKCRNRLALYAACLHVACRAEGTP 187
Query: 166 RTVKGTA 172
T K A
Sbjct: 188 LTFKELA 194
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC++ +V + SAGDT+C CG VL ID SEWRTF+N+ G++DP R+G
Sbjct: 37 ICPDCQESPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L+T I +G L R N+ ++ ++ L A+ I+T+ D
Sbjct: 97 ANPLLHGSQLATEIGFGDGG---LRVRELSRAHNKSNHDKANKALQAAYGQISTLCDSQN 153
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ T + A ++K +D K +G++QDA++A C++IACRQ + R+ +
Sbjct: 154 INKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFR 202
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C++CK+ ++ + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 25 MCAECKEFPPNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA + +L QN+ +N D+G L+ A++ I + +D +
Sbjct: 85 PNLMIDGDQLQTTIAFDGKGA-----KNLSHLQNKMTN-DKGSKQLLNAYRDIQSFTDSI 138
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A IYK V+D K+ +G++Q+A++A C++IACRQ + RT +
Sbjct: 139 NTGTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFR 188
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRT 209
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRT 209
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N + G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRL 119
NPLL L T I +G L R N+ SN D + L A+ I + D
Sbjct: 97 ANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCDSQ 152
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A +YK +D K +G++QDA++A C++IACR+ D+ R+ +
Sbjct: 153 NISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFR 202
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DCK E++ S GD +C CGLVL H +D SEWRTF N ++GD DP RVG
Sbjct: 20 ICRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGD-DPSRVGE 78
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
NPLL LST+IA + L R QN D L AF I+ + +
Sbjct: 79 AQNPLLDGDQLSTIIAY--NTDNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLCEGF 136
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +++ A E+YK V +++S +G++Q++++AA + +ACR+ + PR+ K
Sbjct: 137 QLPNIVQNGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFK 186
>gi|255540855|ref|XP_002511492.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550607|gb|EEF52094.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 90
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 71/102 (69%), Gaps = 14/102 (13%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C+DC + TE+V DHSAGDT+C+ECGL RT AN+S D+ P RVG
Sbjct: 1 MADSYCTDCMRVTEIVMDHSAGDTICAECGL-------------RTSANQSSDHGPNRVG 47
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD 102
P NPLLA+GGL+TVI+K ++ F S+SLG+W NR S+PD
Sbjct: 48 APVNPLLANGGLTTVISKTTKSNALF-SASLGKWPNRASDPD 88
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 12/170 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C +CK+ +V ++S+GD VC CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 26 ICPECKEDPPRLVEEYSSGDMVCETCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D +
Sbjct: 85 PNLMIDGDQLQTAIAFDGKGA-----KNLAHLQNK-INQDKGTKVLLQAYRDIQALTDSI 138
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A I+K V+D K+ +G++Q+A++A C++IACRQ + PRT +
Sbjct: 139 NAGTQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFR 188
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 41 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 99
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 100 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRHMLDAFEDIQRKCDSI 156
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT
Sbjct: 157 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRT 204
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 89
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P+ +S GR NR + D L A+ I+ M
Sbjct: 90 GNPLLDTEDLSTMISYVPD-------NSKAGRELNRAQSKSLVDKKDNALAAAYAKISQM 142
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L ++D A E+YK V D+K RG++Q++++AA ++I CR+ RT K
Sbjct: 143 CDGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFK 196
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K ++V D ++G+ C+ CG V+ D +EWRTF+NE ++ RVG
Sbjct: 9 VTQQKCPSCGKR-KIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNE--ESSRTRVG 65
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLST+I K N ++G+ LS S L W +R S+ DR L A
Sbjct: 66 AGTSLTMHDMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQAL 125
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ + D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+
Sbjct: 126 NEMDKLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTL 184
>gi|356513820|ref|XP_003525607.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-2-like [Glycine max]
Length = 347
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 101/198 (51%), Gaps = 31/198 (15%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI-DETSEWRTF-------------- 47
+ +CSDCK +T +V+DH+AGDT+CSECGLVLES SI +E + R +
Sbjct: 5 EEYCSDCKSYTPLVYDHNAGDTICSECGLVLESRSIEEEIPKLRLYGDKHEDDDDGGGDH 64
Query: 48 -ANESGDNDPVRVGGPTNPLL--ADGGLSTVIAKPNGASGEFLSSSLGRWQNRG---SNP 101
+ V P N LL + GLST++ P+ R RG SN
Sbjct: 65 EDEDEHQEQGFSVSDPFNTLLLTSGAGLSTLVTHPSLYDNNNSDMVKTRKNQRGIKNSNR 124
Query: 102 DRG--------LILAFKTIATMSDRLGLVATIKDRANEIYKKVED--QKSSRGRNQDALL 151
D L+ A T+ M++ LGL +IK+ A E+YKK ED R R+ A +
Sbjct: 125 DAKRKLKTDCDLVAALLTMEQMANNLGLAWSIKNHAKELYKKAEDRRVFRGRRRHSRASM 184
Query: 152 AACLYIACRQEDKPRTVK 169
ACLY+AC++E PRTVK
Sbjct: 185 VACLYLACQEEGFPRTVK 202
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 89
Query: 63 TNPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 90 GNPLLDTEDLSTMISYVPDNFKAGR----ELNRAQSKSLVDKKDNALAAAYAKISQMCDG 145
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V D+K RG++Q++++AA ++I CR+ RT K
Sbjct: 146 YQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFK 196
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 83
Query: 63 TNPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ N +G L+ + +N D L A++ I+ M +
Sbjct: 84 GNPLLDTEDLSTMISYVPENSRAGRELNRA--HQKNTVDKKDNALAAAYQKISQMCEGYQ 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V D+K RG++Q++++AA ++I CR+ R+ K
Sbjct: 142 LPKIVQDGAKEVYKMVHDEKPLRGKSQESIMAASIFIGCRKAKVARSFK 190
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 13/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V D + G+ CS+CGLV+ D +EWR+F+NE G+ R G T+ + D GLS
Sbjct: 19 KMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEGNK--ARTGAGTSLTMHDMGLS 76
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI N A+G+ LS+S L W +R S+ DR L A + + D+L L
Sbjct: 77 TVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKDKLALT 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+
Sbjct: 137 DAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTL 182
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P+ S+ GR NR + D L A+ I+ M
Sbjct: 82 GNPLLDTEDLSTMISYAPD-------STKAGRELNRAQSKSLVDKKDNALAAAYIKISQM 134
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ K
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFK 188
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 13/178 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DGICGRCGKNS-MLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-TDPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
T+ + D GL+T+I N ASG+ LS+S L W +R ++ DR L A
Sbjct: 71 TSLTMHDRGLATIINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALSE 130
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+AT+ D+L L + ++A +Y+K ++ +GR+ AL+A+ LY ACR + PRT+K
Sbjct: 131 LATLKDKLSLSDPVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLK 188
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 82 GNPLLDTEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYVKISQM 134
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ K
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFK 188
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----------SGD 53
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N+ G+
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLTCTNQGN 96
Query: 54 NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFK 110
+DP R+G NPLL L T I +G L R N+ SN D+ L A+
Sbjct: 97 DDPSRIGDAANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYG 152
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I + D + + A +YK +D K +G++QDA++A C++IACR+ D+ R+ +
Sbjct: 153 QITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFR 211
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 12/162 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC ECGLV+E+ +ID EWR F N S N RVG PT + D GL+T I K
Sbjct: 40 GELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTKTMHDKGLTTQIDWKDK 98
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 99 DAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 158
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+Y++ ++ RGR+ + + +CLY+ACRQE PR+++ A
Sbjct: 159 VVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVA 200
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 13/183 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + C+ C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G
Sbjct: 7 MDNPTCARCGKNS-LLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTG 64
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
P++ ++ D GLSTVI N ASG+ LS+S L W +R + DR L A
Sbjct: 65 APSSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQAL 124
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D++ + A + ++A IY+K ++K RGR+ A++AA LY ACR + PRT+K
Sbjct: 125 SDLNKLKDKVSIPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLK 184
Query: 170 GTA 172
A
Sbjct: 185 DVA 187
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
NPLL LST+I+ ++ S + ++ D L A+ I+ M D L
Sbjct: 82 GNPLLDTEDLSTMISYAPDSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQLP 141
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ K
Sbjct: 142 KIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFK 188
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
NPLL LST+I+ ++ S + ++ D L A+ I+ M D L
Sbjct: 82 GNPLLDTEDLSTMISYAPDSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQLP 141
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ K
Sbjct: 142 KIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFK 188
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQ 199
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V G+ VC +CGL+++ +ID EWR F N S + RVG PT
Sbjct: 20 CPECES-SALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQ 77
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 78 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ D+ RGR+ + + ACLY ACRQED PR+++
Sbjct: 138 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLE 192
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQ 199
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 53/55 (96%)
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+DRLGLVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 55
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 103 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 162
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 163 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 220
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +
Sbjct: 221 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQ 275
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 88 GNPLLDSEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKISQM 140
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L ++D A E+YK V +++ RG++Q++++AA ++I CR+ R+ K
Sbjct: 141 CDGYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFK 194
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q N D + AF I + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 156
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D++S +G++ ++++AA + I CR+ + RT K
Sbjct: 157 LPKIVKDCAKEAYKLCHDERSLKGKSTESIMAASILIGCRRAEVARTFK 205
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C +V D + G+ +C +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CTECASRN-LVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQR-ARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ +SS + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ RL L +I++ A YKK + + RGR+ + + AA LY ACRQ PRT+
Sbjct: 130 MASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTL 183
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 83
Query: 63 TNPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 84 GNPLLDTEDLSTMISYVPENVKAGR----ELNRAQSKSLVDKKDNALSAAYAKISQMCDG 139
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V D++ RG++Q++++AA ++I CR+ RT K
Sbjct: 140 YQLPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVARTFK 190
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + + D + G+ VC +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CGDCGSRS-LTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQGDQ-RARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ ++S + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ RL L ++++ A YKK D++ RGR+ + + AA LY ACRQ PRT+
Sbjct: 130 MASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTL 183
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DC++ ++V S GD +C CGLVL +D SEWRTF N ++GD DP RVG
Sbjct: 20 VCPDCRQFPPDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGD-DPSRVGD 78
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
NPLL LST+I+ P G G + L R Q + + L A+ I + +
Sbjct: 79 SGNPLLDTEDLSTMISYVPQG--GNRVGRDLTRIQQKSLVDKKNNALNAAYIRIQELCNG 136
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L T+ D A +YK V + K RG++QD+++AA + + CR+ D PRT++
Sbjct: 137 YQLPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRTLE 187
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q + D + AF + + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNIVDKKDNEVQAAFAKMTMLCDAAE 156
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS +G++ ++++AA + I CR+ + RT K
Sbjct: 157 LPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFK 205
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +
Sbjct: 145 KCDAMLLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQ 199
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 6/169 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 21 ICPDCKEYPPNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGES 80
Query: 63 TNPLLADGGLSTVI--AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
N L D GL T + NG L+S + Q+ N D L ++ I+T+ D +
Sbjct: 81 ANALANDEGLRTQVDMRAANGRLAGKLNSINKKSQSEKLNSD--LQEGYRAISTLVDMMQ 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ A+ IYK + +G+ ++A++A C++IACRQ PRT +
Sbjct: 139 TAPIVNTTASHIYKLAYENGQLKGKPREAVIAGCIFIACRQCGVPRTFR 187
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 12/169 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ EWR+FA E G DP R G PT+ + D GLST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKEGG-TDPTRTGAPTSLTMHDRGLST 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
VI++ N A+G+ LS+S L W +R S+ D+ L A ++ + D+L L
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKLSLSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++ ++A+ IY+K + +GR+ AL+AA +Y ACR + PRT+K A
Sbjct: 120 SVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDVA 168
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 26 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + F + L R Q N D + AF I + D
Sbjct: 85 SNPLLDGNNLSTRIGQGESTDVRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS RG++ ++++AA + I CR+ RT K
Sbjct: 144 LPKIVKDCAKEAYKLCHDEKSLRGKSSESIMAASILIGCRRASVARTFK 192
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 29 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P ++ +GR NR + D L A+ I+ M
Sbjct: 88 GNPLLDTEDLSTMISYVPE-------NTRVGRELNRAQSKSLVDKKDNALAAAYAKISQM 140
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L ++D A E+YK V D++ RG++Q++++AA ++I CR+ R+ K
Sbjct: 141 CDGYQLPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARSFK 194
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + + + A GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 37 CPECKVYPPKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + F + L R Q N D + AF I +SD
Sbjct: 96 SNPLLDGNNLSTRIGQGENTDMRF-TKELNRAQGKNVVDKKDNEVHAAFAKITMLSDAAE 154
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS +G++ ++++AA + I CR+ + RT K
Sbjct: 155 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIIAASILIGCRRAEVARTFK 203
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 10/168 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ PN G +G LS R Q++ + D L+ A+ I+ M +
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLS----RAQSKSAIDRKDSSLVAAYSKISHMCEGY 140
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L ++D + EIYK V D+K RG++Q++++AA + + CR+ + R+
Sbjct: 141 QLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRS 188
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 24 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
NPLL LST I + F + L R Q N D + AF I + D
Sbjct: 83 ANPLLDGNNLSTRIGQGESTDMRF-TKELNRAQGKNVMDKKDHEVQAAFAKITMLCDAAE 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS RG++ ++++AA + I CR+ RT K
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKSLRGKSSESVMAASILIGCRRASVARTFK 190
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 88 GNPLLDSEDLSTMISYVPDNTKA---GRELNRAQSKSLVDKKDNALAAAYAKISQMCDGY 144
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V +++ RG++Q++++AA ++I CR+ R+ K
Sbjct: 145 QLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFK 194
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +C+ + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 24 CPECRVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q N D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS +G++ ++++AA + I CR+ RT K
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIMAASILIGCRRAQVARTFK 190
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 27 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGD-DPSRVGDA 85
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ P+ L R Q + D L A+ I+ M D
Sbjct: 86 GNPLLDTEDLSTMISYVPDNTKA---GRELTRAQQKSLVDKKDNALAAAYVKISQMCDGY 142
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L ++D A E+YK V ++KS RG++Q++++AA ++I CR+ R K
Sbjct: 143 QLPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARLFK 192
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V D+ GD +CS+CGL++ ID +SEWRTF+++ DP RVG T+P+
Sbjct: 18 CPYHPAAALVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS-TDPV 76
Query: 67 LADGGLSTVI-AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L + LST I NG S L + R L+ F IATM++R+ A+I
Sbjct: 77 LQN--LSTFIQPSANGFEPPNHFSFL-----KMDTTTRKLMFGFAMIATMAERINAPASI 129
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
A I+K+ + + R+ +A+ ACLYIACRQE PRT K
Sbjct: 130 VSHAKTIFKQALEPAALTHRSLEAVSVACLYIACRQEGVPRTFK 173
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 102/178 (57%), Gaps = 13/178 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D+ C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DSTCGRCGKNS-MLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGG-ADPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKT 111
T+ + D GL+T+I+ N +SG+ L+S+ L W +R ++ D+ L A
Sbjct: 71 TSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALSE 130
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++T+ D+L L + ++A+ IY+K ++ +GR+ AL+AA LY ACR + PRT+K
Sbjct: 131 LSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLK 188
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K T +V DH +G+T CS+CG VL + + EWR+F +E GD R G PT+
Sbjct: 14 CPRCVKGT-LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQDEHGDR--ARAGAPTS 70
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG+ LSSS L W +R P DR AF +
Sbjct: 71 LTMHDMGLATIINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K
Sbjct: 131 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 186
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 6/166 (3%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST+I+ PN G +G LS + + ++ D L+ A+ I+ M + L
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLSRA--QLKSAIDRKDSSLVAAYSKISHMCEGYQL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
++D + EIYK V D+K RG++Q++++AA + + CR+ + R+
Sbjct: 143 PRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRS 188
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G P++
Sbjct: 10 CLRCGKNS-ILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTGAPSSL 67
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
++ D GLSTVI N ASG+ LS+S L W +R + DR L A +
Sbjct: 68 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D++ + A + ++A IY+K ++K RGR+ A++AA LY ACR + PRT+K
Sbjct: 128 LKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLK 182
>gi|294893167|ref|XP_002774359.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239879707|gb|EER06175.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 298
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F ++ L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNTRLARTHMIAVNSENVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I R +I K+++D +G+ L A Y+ACRQE R++K
Sbjct: 124 DNIYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIK 170
>gi|294953373|ref|XP_002787731.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239902755|gb|EER19527.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 332
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F ++ L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNTRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I R +I K+++D +G+ L A Y+ACRQE R++K
Sbjct: 124 DNIYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIK 170
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ + L+ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQVQGSDVK-LTRELNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + RT K
Sbjct: 146 LPRIVKDCAKEAYKLCFEERALKGKSQESIMASVILVGCRRAEVGRTFK 194
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ ++ RGR+ + + ACLY ACRQE PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLE 198
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 10 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 69
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 70 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 128
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 129 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFK 176
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ ++ RGR+ + + ACLY ACRQE PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLE 198
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+ + D GLS
Sbjct: 19 KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSLTMHDMGLS 76
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI N ++G+ L+SS L W +R S+ DR L A + + D+L L
Sbjct: 77 TVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKDKLALT 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ A
Sbjct: 137 DAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVA 186
>gi|294896450|ref|XP_002775563.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881786|gb|EER07379.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 199
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F +S L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I R +I K+++D +G+ L A Y+ACRQE R++K
Sbjct: 124 DNIYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIK 170
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+ + D GLS
Sbjct: 19 KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSLTMHDMGLS 76
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI N ++G+ L+SS L W +R S+ DR L A + + D+L L
Sbjct: 77 TVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKDKLALT 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ A
Sbjct: 137 DAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVA 186
>gi|294896448|ref|XP_002775562.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881785|gb|EER07378.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 307
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F +S L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I R +I K+++D +G+ L A Y+ACRQE R++K
Sbjct: 124 DNIYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIK 170
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKIYPPKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ +F + L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVKF-TRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + R+ K
Sbjct: 146 LPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRSFK 194
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFK 190
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 19/183 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVG 60
+ C +C++ TE++ H GD VC+ CG V+ ID SEWRTFAN+ G+ DP R+G
Sbjct: 23 ETMCPECRRPTEILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIG 82
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
NPLL L+T +A+ G + E + S + + DR L AF+ I +R+
Sbjct: 83 SAVNPLLNGSDLTTTMAQ--GFNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERMH 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDA--------------LLAACLYIACRQEDKPR 166
L + I +A +I+K++E+ +R RN A + AA L++ACR E R
Sbjct: 141 LPSNITLKAKQIFKQMEEH-YTRERNGAASQFGAIVGGKGAKAVAAASLFLACRLEKVSR 199
Query: 167 TVK 169
T K
Sbjct: 200 TYK 202
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + + + S GD VC+ CGLVL ID SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 87 SNPLLDGNNLSTRIGQGETTDSRF-TKELNRAQGKNIVDKKDNEVQSAFAKITMLCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+KS +G++ ++++AA + I CR+ RT K
Sbjct: 146 LPKIVKDCAKEAYKLCNDEKSLKGKSTESVMAASILIGCRRAQVARTFK 194
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 26 CPECKVYPPKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSS-SLGRWQ--NRGSNPDRGLILAFKTIATMSDRL 119
+NPLL LST I + G G+ ++ L R Q N D L F I + D
Sbjct: 85 SNPLLDGNSLSTRIGQ--GEGGDLRATRDLNRAQGKNVMDKKDNELQGVFAKITMLCDAA 142
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+K+ +G++ ++++AA +++ CR+ D RT K
Sbjct: 143 ELPKIVKDCAKEAYKLCHDEKALKGKSTESIMAAAIFVGCRRADVARTFK 192
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ C CG V+ D +EWR+FAN+ D R G T+
Sbjct: 12 CPSCGDR-KMVTDETTGELFCGRCGFVVTDKISDTGAEWRSFAND--DTSRARTGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMGK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+ A
Sbjct: 129 LKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDDVA 186
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D G+ VC++CGLV+E ID EWR F N S + RVG PT
Sbjct: 31 CPECSS-TDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
MS LG+ +I++ A+ IY++ D RGR+ + + A LY ACR+E PR+++
Sbjct: 149 MSSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLE 203
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 25 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 84 SNPLLDGNNLSTKIGQGETTDMRF-TKELNRAQGKNVLDKKDNEIQAAFAKITMLCDASE 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+K+ +G++ ++++AA + + CR+ + RT K
Sbjct: 143 LPKIVKDCAKEAYKLCHDEKALKGKSSESIMAASILLGCRRAEVARTFK 191
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 83
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P ++ +GR NR + D L A+ ++ M
Sbjct: 84 GNPLLDTEDLSTMISYVPE-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKLSQM 136
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L ++D A E+YK V +++ +G++Q++++AA ++I CR+ R+ K
Sbjct: 137 CDGYQLPKIVQDGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFK 190
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
MS LG+ ++++ A+ IY++ D RGR+ + + A LY ACRQE PR++ A
Sbjct: 143 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVA 200
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 16/175 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPACTK-AKMVLDETTGELFCSVCGFV-ETEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSSERNLRQALSEMD 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ D+L L T+ ++A IY+K ++K +GR+ L+AAC+Y +CR + PRT+
Sbjct: 134 KLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTL 188
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
STVI + A G+ LS L +WQ R + DR L +A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
IK+ A IY+K ++ RGR+ ++++AA +Y ACR +PRT+ A
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIA 186
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+++ C +C + +V G+ VC +CGL++E+ +ID EWR F N + RVG
Sbjct: 22 VSEQTCDECGSSS-LVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ ++++ A+ IY++ D+ RGR+ + + ACLY ACR+E PR+++
Sbjct: 140 SEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLE 199
Query: 170 GTA 172
A
Sbjct: 200 EIA 202
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ + L+ L R Q++ D L ++ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVK-LTRELNRAQSKSIVDKKDNELQASYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + R+ K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFK 194
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ D G+ VC++CGLV++ SID EWR F N S RVG P
Sbjct: 24 CPECD-STDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 13/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V D + G+ C +CGLV+ + +EWR+F+N+ +++ RVG T+ + D GLS
Sbjct: 19 KMVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSND--ESNRTRVGAGTSLTMHDMGLS 76
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I N ++G+ LS+S L W +R S+ DR L A + + D+L L
Sbjct: 77 TIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKDKLALT 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+
Sbjct: 137 DSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTL 182
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 21 AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KP 79
+G+ +C +CGLV+E +ID EWR F N S RVG PT + D GL+T I K
Sbjct: 38 SGELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKD 96
Query: 80 NGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRA 129
A G +SS L +WQ R D R L A I M+ LG+ ++++ A
Sbjct: 97 KDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVA 156
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ IY++ D+ RGR+ + + +CLY ACRQE PR+++
Sbjct: 157 SVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLE 196
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C EV+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 25 CPECSSE-EVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 83 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 143 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 200
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V DH+ GD +C CGLV +D SEWR F N+ DP RVGGP NP
Sbjct: 25 CKECGS-DDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNP 83
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVA 123
LL + G STVI + L++ L R QNR S DR L+ AF I+ ++R L
Sbjct: 84 LL-ESGPSTVIGGGAVSDSRSLNARLNRAQNRHNTSKSDRVLLDAFSLISQYAERSYLSQ 142
Query: 124 TIKDRANEIYKKVEDQKSSR---GRNQD-------ALLAACLYIACRQEDKPRTVK 169
+ DRA E++K D + GR + +++AA L+ A + E PRT K
Sbjct: 143 RVVDRAQELFKLYFDHLTLNPQGGRTRYLKEHETVSVVAASLHWASQIEGVPRTFK 198
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
MS LG+ ++++ A+ IY++ D RGR+ + + A LY ACRQE PR++ A
Sbjct: 147 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVA 204
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T V+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 14/183 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T + C C +++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G
Sbjct: 7 ITGSKCPACGDK-KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTG 63
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLSTVI N ++G+ LS+S L W +R S+ DR L A
Sbjct: 64 AGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQAL 123
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+
Sbjct: 124 NEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLD 183
Query: 170 GTA 172
A
Sbjct: 184 DVA 186
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G T+ + D GLS
Sbjct: 31 KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTGAGTSLTMHDMGLS 88
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI N ++G+ LS+S L W +R S+ DR L A + + D+L L
Sbjct: 89 TVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKDKLALT 148
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ A
Sbjct: 149 DAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVA 198
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 12/166 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ G+ C +CG V+ S + EWR F +SG N P R G P++ L+ D GLSTVI
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSGAN-PARTGAPSSLLIHDMGLSTVIN 62
Query: 78 KPNG-ASGEFLSSS-------LGRWQNRGSN---PDRGLILAFKTIATMSDRLGLVATIK 126
N A+G+ LS+S L W +R DR L A + + D++ L +
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTNVL 122
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++A +Y+K ++K RGR+ A++AA +Y ACR + PRT+K A
Sbjct: 123 EKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVA 168
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC T + + S+GD VC+ECGLV+ + +D SEWRTFAN+ +DP RVG N
Sbjct: 24 CNDCGVPTLLQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNE 83
Query: 66 LLADGGLSTVI--AKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLG 120
+ L T + + GAS + + S N+ ++G + I + D++
Sbjct: 84 IYGPSALETKVDMRRDQGASYKIMKSL--NAANKKIQNEKGQAAINAGMAKIKDLVDKIH 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +A ++++VE+ K+ +G++ DA +A C++IACR E PRT +
Sbjct: 142 GGGNVIKQAQSLFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFR 190
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 11 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 68
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 69 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 129 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 186
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V HS G+ +C +CGLVL+ +ID EWR F N S RVG PT
Sbjct: 48 CPECNSENLV---HSEGEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTK 103
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I N A G LSS L +WQ R D R L A +
Sbjct: 104 TMHDKGLTTTIDWQNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 164 MASALGVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 221
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G +DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-SDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
+I N +SG+ L+SS L W +R ++ DR L A + + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++A IY+K D+ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLK 165
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFK 194
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 26 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I G+ + L R Q N D L F + + D
Sbjct: 85 SNPLLDGNSLSTRIGSAEGSDAR-TTRDLNRAQGKNVMDKKDNELQAVFAKLTMLCDAAE 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK D+K+ +G++ ++++A+ + I CR+ + RT++
Sbjct: 144 LPKIVKDCAKEAYKLCYDEKALKGKSTESIMASAILIGCRRAEVARTLR 192
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPSCTK-AKMVLDENTGELFCSFCGFV-EAEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSAERNLRQALSEMD 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ D+L L + ++A IY+K ++K +GR+ L+AAC+Y ACR + PRT+
Sbjct: 134 KLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTL 188
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
C K ++V D +G+ VCS+CGLV + +EWR F +ES N RVG P++
Sbjct: 2 CGKDQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSES--NGRSRVGSPSSLAYH 59
Query: 69 DGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSD 117
D GL+TVI K N +SG L S L W R S R L+ AF + + D
Sbjct: 60 DMGLATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKD 119
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+LGL I ++ +Y+K ++ RGR+ ++LAA +Y +CR+ RT+K A
Sbjct: 120 KLGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVA 174
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
++ C +C HT++ +H G+TVC ECGLV+E ID EWR F + S + RVG P
Sbjct: 28 ESLCPECGGHTQLDAEH--GETVCEECGLVVEEDEIDHGPEWRAF-DASERDSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSSS L W R D R L A
Sbjct: 85 TTKMMHDKGLSTNIGWQDKDAYGNSLSSSQRQKMQRLRTWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ + PR++
Sbjct: 145 IDRMASALGLPKNVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRSL 201
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK +V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+N
Sbjct: 28 ICPDCK-CARLVEEFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSN 85
Query: 65 PLL-ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
PLL T+I+ +G +G ++ L R R + N ++ + AF +I M D + L
Sbjct: 86 PLLNGVETFETIISFKDGNTG--VARDLNRAATRAAVKNGEKSVAAAFLSIQDMCDTISL 143
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
T+ D A ++Y++ +++K RG+ DA++AAC++IACRQ R+ K
Sbjct: 144 PRTVTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRSFK 191
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + ACLY ACRQE PRT++
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLE 195
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 23 CPDCKLFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDPSRVGEAS 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
N L L+T+I+ G ++L + Q + + L A++ I+ + + L
Sbjct: 83 NSLYDTEDLTTMISYTANPGGSGSKNNLNKIQQKSLVDKKNYALQAAYQRISELCNGYQL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ D A +YK V D + +G++QDA++A+ + + CR+ + PRT++
Sbjct: 143 PKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRTLE 190
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 18/176 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D GD VC++CG+V ID EWRTF N+ DP RVGG NP
Sbjct: 14 CGECGS-TDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINP 72
Query: 66 LLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
LL D GL+T I++ P GA+ L+ L R Q+R DR + + I+ + +R GL
Sbjct: 73 LL-DSGLATSISQGPAGANA--LNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLP 129
Query: 123 ATIKDRANEIYKKVEDQKS-------SRGRNQD----ALLAACLYIACRQEDKPRT 167
+KDRA E+ + D + +R R ++ ++++A L+IACR E PRT
Sbjct: 130 QLVKDRACELLRLYYDHLTLGADGVRARARFREDETASIISAALFIACRNEGFPRT 185
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C K ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G
Sbjct: 12 TATTCGRCGKKG-MMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKEGG-TDPTRTGA 69
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS---NPDRGLILAFK 110
PT+ + D GL+T+I N +SG+ L+SS L W +R + DR L A
Sbjct: 70 PTSLTIHDRGLATIINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALS 129
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ + D+L L + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 130 ELSRLKDKLSLSDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 188
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N N+ RVG P
Sbjct: 20 LCPDCETET-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-LDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
+I N +SG+ L+SS L W +R ++ DR L A + + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++A IY+K D+ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLK 165
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +VV D G+ VC++CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECES-GDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +VV D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 198
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C +CGLV+E ID EWR F +E + RVG
Sbjct: 29 TLEVCPECG-SPRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRS-RVGA 86
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N G+ +S L +WQ R + +R L A
Sbjct: 87 PVTYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALS 146
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ M+ LGL ++++ A IY+K D+ RGR+ + ++AA LY ACRQ PRT+
Sbjct: 147 ELDRMASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTL 204
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 21 ALCPDCETET-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTI 112
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 79 TQSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 138
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 139 DRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 195
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V DHS G+ C +CG+V+E +D EWR++ +E G R G P
Sbjct: 50 DGTCPECGS-PRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSERGMQR-ARAGPP 107
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTI 112
L D G +T I + G LS + L +WQ++ S+ +R L+ + +
Sbjct: 108 VVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLMEL 167
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ LGL +I +RA IY++V +RGR D+++AA +Y ACR+ PRT+
Sbjct: 168 ERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTL 223
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK E+ + GD VC+ CGLVL + +D SEWRTF+N ++GD DP RVG
Sbjct: 19 CPECKVFPPELAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGD-DPSRVGEA 77
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I G S GR N+ + D L A+ I+ M
Sbjct: 78 GNPLLDGNQLSTMIGYGQG------DSRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMC 131
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D L ++D A + YK D+K+ +G++Q++++AA + + CR+ RT K
Sbjct: 132 DAAQLPRIVQDGAKQAYKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFK 184
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL + ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + A LY ACR+ED PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKEDIPRSLE 195
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECG-SSNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALS 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ ++++ + IY++ + RGR+ + + A LY CRQED PR+++
Sbjct: 140 EIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLE 198
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTL 201
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 198
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 15/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V HS G+ VC +CGLVL+ +ID EWR F N++ + RVG PT
Sbjct: 28 CPECSSDSIV---HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTK 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LG + ++ A+ +Y++ ++ RGR+ +A+ +CLY ACR E PR++
Sbjct: 144 MASALGAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSL 197
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 199
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 23 CPECKVYPPKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST I + G + L R Q++ D + F I + D
Sbjct: 82 ANPLLDGNSLSTRIGQGEGGDAR-ATRDLNRAQSKNVLDKKDNEIQAIFIKITMLCDVAE 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +KD A EIYK D ++ +G++ ++++AA + + CR+ RT+
Sbjct: 141 LPKIVKDSAKEIYKLCYDSRALKGKSMESVIAAAILLGCRRAKVARTL 188
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 12/174 (6%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + E + D + GD +C +CGLV+ +D SEWR FA +SGD DP R
Sbjct: 1 MCPDCKNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFA-DSGD-DPSR-ASRV 57
Query: 64 NPLLADGGLSTVIAK-----PNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMS 116
N L GGL+T IAK +G+ + +WQ R S D+ L+ F I ++
Sbjct: 58 NDWLPSGGLATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIA 117
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGR-NQDALLAACLYIACRQEDKPRTVK 169
+ L L IK++A E+Y E +++ R +D+++AA +Y+AC++E PRT K
Sbjct: 118 EILVLPQKIKNKAKELYSSFESKRNKSMRCKKDSIVAAIIYMACKEEGVPRTFK 171
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K ++V D + G+ C+ CG V+ D +EWR+F+ + + R G T+
Sbjct: 38 CPSCGKQ-KIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGD--ETSRSRSGAGTSL 94
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLSTVI N +G+ LS+S L W +R S+ DR L A +
Sbjct: 95 AMHDMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDK 154
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+
Sbjct: 155 MKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTL 208
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
E+V S G+ +C ECGLV+E +D EWR F N + RVG PT L D GL+
Sbjct: 33 EIVHRSSRGERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTTTLHDKGLT 91
Query: 74 TVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I K A G +SS L +WQ R D R L A I M+ LG+
Sbjct: 92 TEIDWKNKDAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDRMASALGVP 151
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+++ A+ IY++ D+ RGR+ + + A LY CR+E PR+++ A
Sbjct: 152 RDVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEIA 201
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 195
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + + + +C ECGLV+E +ID EWR F N + + RVG PT
Sbjct: 32 CPECDSGA-LVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQ 89
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 90 TMHDKGLTTQIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + +CLY CRQE PR+++
Sbjct: 150 MASALGVPRSVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLE 204
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 195
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Query: 31 LVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLAD-GGLSTVIAKPNGASGEFLSS 89
LV ES D+ TFANE GD DP RVGGP NP+ LST I+ +G SG S
Sbjct: 335 LVTESSIPDQN----TFANEEGD-DPSRVGGPQNPIYEGLDSLSTSISFRDGNSGH--SR 387
Query: 90 SLGRWQNRGSN--PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L R R SN R L + F+ I +M D+ L ++ D A +Y++ E++K RG+
Sbjct: 388 ELQRAAARLSNDKSQRSLTVVFEQIQSMCDQYSLPRSVSDTAKMLYRRTEEEKLLRGKQP 447
Query: 148 DALLAACLYIACRQEDKPRTVK 169
DA++AACL+IACRQ PRT K
Sbjct: 448 DAIVAACLFIACRQAAVPRTFK 469
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V G+ VC ECGL++E +ID EWR F N S + RVG PT
Sbjct: 29 CEECESGT-LVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++ A
Sbjct: 147 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVA 204
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+VFD G+ +C+E G VLE +++ EWR F E + R+GGP +P + D GL+T
Sbjct: 26 IVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKEKRS-RIGGPLSPTVHDRGLTT 84
Query: 75 VIA-KPNGASG---------EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
+I + ASG EFL +WQ R S+ DR L A + +S++L L
Sbjct: 85 LIDWRDRDASGKKLEPKKRLEFLRYR--KWQIRSRIQSSIDRNLAQAMNELDRLSNQLHL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A IY+K ++ RGR+ ++++AA +Y+ACR + PRT+
Sbjct: 143 NRAVREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTL 189
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ ++V S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+N L + L+T+I+ ++ ++L + Q + + L A++ I+ + +
Sbjct: 81 SNSLYDNEDLTTMISYAPNSNSSGSKNNLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRTLE 189
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 195
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C ++V D G+TVC ECGLV+E SID EWR F N + ++ RVG P
Sbjct: 31 DIACPEC--SGDLVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I N A G LS L +W R ++ +R L A
Sbjct: 88 TTNMMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I MS LGL +++ A+ IY++ ++ GR+ + + + LY A RQ + PR++
Sbjct: 148 IERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 207
Query: 172 A 172
A
Sbjct: 208 A 208
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C C+ T + ++S+GD VC CGLVL +DE SEWRTFA + +DP RVGGP+
Sbjct: 32 ICPSCQDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGPS 91
Query: 64 NPLLADGG----LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
PL GG ST+I+ +G SG + + ++ ++ L+ ++K I+ + +++
Sbjct: 92 -PLAGLGGSADQFSTIISDRDGNSGLAKELQKAALRTQRASGEKNLVGSYKEISAVCEKI 150
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A ++YK+ +D+K +G++ DA++AAC++IACRQ RT K
Sbjct: 151 NLPTMVSDIAKQLYKRQDDEKLLKGKSNDAIIAACIFIACRQAGVSRTFK 200
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ +L L T+ ++ IY+K D+ RGR+ L+AA LY ACR + PRT+ A
Sbjct: 129 LKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V + + + +C +CGL++E +ID EWR F N S RVG PT
Sbjct: 28 CPECD-SADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 86 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ ++ IY++ + RGR+ + + +CLY CRQE PR+++ A
Sbjct: 146 MASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVA 203
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K +++ D++ G+ CS CG V+ I+ EWR+F+N+ D RVG
Sbjct: 6 ITKQRCPSCTK-AKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSNDGTDRS--RVG 62
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAF 109
T+ + D GLST+I + N A+G+ L SS+ + W +R S+ +R L A
Sbjct: 63 AGTSITIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSSAERNLRQAL 122
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ M +L L + ++A IY+K ++K +GR+ L+AAC+Y +CR + RT+
Sbjct: 123 SEMDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTL 181
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 195
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ +L L T+ ++ IY+K D+ RGR+ L+AA LY ACR + PRT+ A
Sbjct: 129 LKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPT 63
C C ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G PT
Sbjct: 11 LCPRCA-QGKLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQDEHGDR--ARAGAPT 67
Query: 64 NPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTI 112
+ + D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 68 SLTMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 127
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K
Sbjct: 128 NRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 184
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC ++ D GD +C ECGLVL SH+ID TSEWR FA++ DP R+G P +P
Sbjct: 22 CTDCGSEN-LLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHP 80
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
LL + + GA+ L+ L QN+ + DR L +F I ++ L
Sbjct: 81 LLESNSGTLISKGLRGANN--LNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLFK 138
Query: 124 TIKDRANEIYKKVEDQKSSRG---------RNQDAL--LAACLYIACRQEDKPRTVK 169
IK+R E++K D + R R + L +AA ++I R E PRT +
Sbjct: 139 GIKERVEELFKSYFDYLTLRSDGSRTRYSLRKDETLSSIAASIFIVSRNEGIPRTFR 195
>gi|351694833|gb|EHA97751.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 131
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + D+ AGD +C ECGLV ID SEWRTF+N DP +VG NPL
Sbjct: 15 CPNHPNAILVQDYRAGDMICPECGLVAGDRVIDVGSEWRTFSNGKATKDPSQVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGL 121
L++G LST+I K GA+ F ++QNR S+ D+ ++ AFK I TM+DR+ L
Sbjct: 75 LSNGDLSTMIGKGTGAA-SFDEFGYSKYQNRRTMSSSDQAMMNAFKEITTMADRINL 130
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 15/178 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K+ +V D + + CS CG+V+E + D E R FAN + D G T+
Sbjct: 18 CPRCGKNA-LVTDVESSEIFCSNCGIVVEEKTNDRRPE-RAFANSTTDKS--HTGDKTSL 73
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
D GLSTVI P AS + + L +W NR +N DR L A ++
Sbjct: 74 TRHDRGLSTVINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSK 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M ++L L I ++A+ IY+K ++K +GR+ +L+AACLY ACR+ + PRT++ A
Sbjct: 134 MKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREVA 191
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D G++VC+ECGLV+E SID EWR F + D+ RVG PT
Sbjct: 32 CPECSGR--VVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDSKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
MS LGL +++ A+ IY++ + GR+ + + + LY A RQ PR++ A
Sbjct: 149 MSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQTPRSIDEVA 206
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 90/181 (49%), Gaps = 13/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V + VC +CGLV+E +ID EWR F N S RVG P
Sbjct: 27 ERVCPECNSDS-LVRSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 85 TTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALSE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I MS LG+ ++++ A+ +Y++ + RGR+ + + CLY ACRQE PR+++
Sbjct: 145 IDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEEV 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC T ++ D G+ VC ECGLVL ID EWR F + D RVG P
Sbjct: 20 LCPDCDTAT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDQ-LSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +SS L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKEDIPRSLE 193
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K ++V D+ +G+T CS+CG VL + EWR+F +E GD R G PT+
Sbjct: 12 CPRCAKG-KLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQDEHGDR--ARAGAPTS 68
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L+S+ L W +R P DR AF +
Sbjct: 69 LTMHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 128
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR PR +K
Sbjct: 129 RLKDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLK 184
>gi|324528353|gb|ADY48903.1| Transcription initiation factor IIB, partial [Ascaris suum]
Length = 181
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 44 WRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN-PD 102
WR+F+ E DP RVG P NPLL LST IA G+S SL Q R N D
Sbjct: 1 WRSFSGEKSGIDPSRVGAPENPLLGSSDLSTSIAVYYGSSE--CDQSLASAQRRTLNGVD 58
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R + A I MS R+ L +I+D A ++++ V D ++ G+N +A AACLYIACR+E
Sbjct: 59 RQMTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKE 118
Query: 163 DKPRTVK 169
PRT K
Sbjct: 119 GVPRTFK 125
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVIA-KPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 186
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 28 LCPDCETET-IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 85
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 86 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 146 RMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 201
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALS 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ ++++ + IY++ + RGR+ + + A LY CRQE PR+++
Sbjct: 140 EIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 198
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+E PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLE 195
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 43 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 100
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 101 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 160
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 161 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLE 216
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 26 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 83
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 84 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 144 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLE 199
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVE 172
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 11 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 64
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 65 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 125 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVE 173
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+E PR+++
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLE 195
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C ++VV S G+ +C CGLV+E ID EWR F ++ N RVG
Sbjct: 32 TLSTCSECGS-SDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAFNHQERQNKS-RVGA 89
Query: 62 PTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 90 PTTQTIHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALS 149
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ +++ + IY++ + RGR+ + + A LY CRQE PR+++
Sbjct: 150 EIERMASALGVPKAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 208
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CDECSDGT-LVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +S+ L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++ A
Sbjct: 145 MASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVA 202
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +H G+TVC+ECGLV+E ID EWR F N S ++ RVG PT
Sbjct: 33 CPECGGRLDADTEH--GETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTN 89
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A+ IY++ ++ GR+ + + A LY A RQ + PR++
Sbjct: 150 MASALGLPKTVRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSL 203
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSR-TRTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
MS LGL +++ A IY+K + RGR+ + ++AA +Y ACR PRT++
Sbjct: 134 MSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLE 188
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ G+ +C +CG V+E ID EWR F +E + RVG P
Sbjct: 33 CPECG-SPRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRS-RVGAPITY 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GL+T+I N G+ +S L +WQ R + +R L A +
Sbjct: 91 TIHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+
Sbjct: 151 MASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTL 204
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P + LL D G
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKG 70
Query: 72 LSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
LST I +G L +WQ+R D R L A + ++ L L ++
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A +Y++ + RGR+ +A++AAC+Y ACR PRT+ A
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIA 176
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVA 272
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ +C +CGLV+E ID EWR F +E + RVG P
Sbjct: 32 CPECG-SPRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRS-RVGAPITY 89
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 90 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+
Sbjct: 150 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTL 203
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 188
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV++ + +D EWR F + S RVG P
Sbjct: 26 CPECHS-TALVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAF-DHSERQSKSRVGAPVTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K ++G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A IY++ D RGR+ + + + LYIACRQE PR+++
Sbjct: 144 MASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLE 198
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 188
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 26 CPECESEN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTN 64
C C K ++V D+ +G+ C++CG V+ + EWR+FA+ E GD R G PT+
Sbjct: 11 CQRCGK-GKLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHDEHGDR--ARTGAPTS 67
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L++S L W NR P DR AF +
Sbjct: 68 LTMHDMGLATIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAFSELN 127
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR PR +K
Sbjct: 128 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLK 183
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+N L L+T+I+ ++ +SL + Q + + L A++ I+ + +
Sbjct: 81 SNSLYDTEDLTTMISYAPNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLE 189
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
L I+D+A +++ +++ RGR+ + AAC+Y ACR
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACR 163
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + S N+ RVG P
Sbjct: 28 DVVCPECTGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DASEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T +V D G+ VC ECGLVL ID EWR F + DN RVG P
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDN-LSRVGAPLTQ 80
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIAT 114
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 81 SMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 141 MVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 195
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D GD VC ECG+VL H +D TSEWR F+ ++ +DP+R+G P + LL + T+I+
Sbjct: 32 DMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHELL-EKNPGTLIS 90
Query: 78 KPNGASG-EFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
K G G L+ L + QNRG+ DR L F I +++ L IK R E +K
Sbjct: 91 K--GLKGSNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLFMGIKKRVEEFFK 148
Query: 135 KVEDQKSSR---GRNQDAL--------LAACLYIACRQEDKPRTVK 169
D + R R++ +L +AA ++I R E PRT K
Sbjct: 149 LYFDYLTLRTDGTRSRYSLRKNETVSSIAASIFIVSRNEKIPRTFK 194
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + C++CGLV+ + +D EWR F +E RVG P
Sbjct: 34 CPECGSKN-LVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKR-ARVGAPMTY 91
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
+ D GLST++ + G++ +W + + +R I A I M+ L L I
Sbjct: 92 RIHDKGLSTLVTWSSPGQGQYKLKKRQQWTHIANTTERSFIFALSEIDRMASALRLPINI 151
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ A+ +Y+K + RGR+ + + +A LY++CRQ PRT++
Sbjct: 152 REAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLE 195
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECGSDS-LVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ D RGR+ + + + LY ACR+E PR+++
Sbjct: 145 MASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLE 199
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 15 VCPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTT 72
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 73 QTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 132
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 133 RMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 188
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DVTCPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++
Sbjct: 145 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ ++ RGR+ + + + LY ACR+ED PR+++
Sbjct: 138 RMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKEDIPRSLE 193
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
IY++ D+ RGR+ + + ACLY ACR+E PR+++ A
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIA 206
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVG 60
T C DCK+ + + +A DT+C+ CG+VL I SEWRTF ++ G DP RVG
Sbjct: 27 THLICPDCKQVPPDLIEENA-DTICANCGMVLAERLISYESEWRTFNSDEGKGEDPNRVG 85
Query: 61 GPTNPLLADGGLSTVIAK--PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
N LL T+I PN S E + + D+ L A+ + ++
Sbjct: 86 EADNELLLTNNAGTMIGGGGPN-VSRETRKLKKAQAMQLENKADKALQAAYAQVEAWGEK 144
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L A +K A +K+V + + RG+ D +LA CL+IACRQ PR+
Sbjct: 145 AKLTAPVKMAAKMYFKRVYEANALRGKQTDVILAGCLFIACRQLKTPRSF 194
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|34394691|dbj|BAC83997.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
Length = 354
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 40/198 (20%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL------ESHSIDETSEWRTFANESGDNDPVR 58
+C C++ T +V DH GD +C+EC +VL ++ + A+ D+DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PTNPLLADGGL---------STVIAKPNGASGEFLSSSLGRW 94
G PT L A+G + V K G G ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTK-LQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVTKA---- 124
Query: 95 QNRGSNPD--RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALL 151
RG PD + L F I M+ RLGL ++DR ++ +KVE+ K +RGR++DAL
Sbjct: 125 --RGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALY 182
Query: 152 AACLYIACRQEDKPRTVK 169
AACL+ ACR E PRT+K
Sbjct: 183 AACLHTACRMEGAPRTLK 200
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECDSDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|125558451|gb|EAZ03987.1| hypothetical protein OsI_26125 [Oryza sativa Indica Group]
Length = 354
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 40/198 (20%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL------ESHSIDETSEWRTFANESGDNDPVR 58
+C C++ T +V DH GD +C+EC +VL ++ + A+ D+DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PTNPLLADGGL---------STVIAKPNGASGEFLSSSLGRW 94
G PT L A+G + V K G G ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTK-LQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVTKA---- 124
Query: 95 QNRGSNPD--RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALL 151
RG PD + L F I M+ RLGL ++DR ++ +KVE+ K +RGR++DAL
Sbjct: 125 --RGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALY 182
Query: 152 AACLYIACRQEDKPRTVK 169
AACL+ ACR E PRT+K
Sbjct: 183 AACLHTACRMEGAPRTLK 200
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ D K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE +D S G+ C+ CG VLE + +DE EWR F E + R G P
Sbjct: 7 CPNCG-STEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKR-ARTGPPMTN 64
Query: 66 LLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N +G + + L WQ R D R L A +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNPITGVYRNKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ ++GL +K++A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 125 MAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D++ GR+ + + A LY A RQ PR++
Sbjct: 168 MASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSL 221
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 74
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 75 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 134
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+
Sbjct: 135 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTL 180
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRS-RTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LGL +++ A IY+K + RGR+ + ++AA +Y ACR PRT++
Sbjct: 134 MASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLE 188
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D++ GR+ + + A LY A RQ PR++
Sbjct: 168 MASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSL 221
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGGL 72
E ++D S G+ VC++CG V+E + +DE EWR F + G + RVG P + LL D GL
Sbjct: 14 EFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ L L +++
Sbjct: 72 STDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 176
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSKVDKKEIGRSFRFIARHLN------LTPKKLFVKPSDYVNKFADELGLSEKVRKRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++ ++ + G++ L+AA LYIA E++ RT + A
Sbjct: 232 LLEEAYNRGLTSGKSPAGLVAAALYIAGLMEEERRTQREVA 272
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVG 60
T C C ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEHGDR--ARAG 61
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAF 109
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 62 APTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAF 121
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K
Sbjct: 122 SELNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 181
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 144 EIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 TA 172
A
Sbjct: 204 IA 205
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR PR +K
Sbjct: 123 ELNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLK 181
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 23 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 81
Query: 74 TVIAKPNG-ASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T I N A+G+ L L RWQ R S+ +R L A + +SD+L L
Sbjct: 82 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 141
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A IY++ ++ RGR+ ++++AA +Y ACR+ PRT+
Sbjct: 142 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTL 187
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 19 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 77
Query: 74 TVIAKPNG-ASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T I N A+G+ L L RWQ R S+ +R L A + +SD+L L
Sbjct: 78 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+K+ A IY++ ++ RGR+ ++++AA +Y ACR+ PRT+ A
Sbjct: 138 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIA 187
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ PRT+ A
Sbjct: 133 DSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIA 190
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 44 CPECQSE-KLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 101
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 102 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 162 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 219
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K + D + G+ CS+CG V E EWR F+ + GDN R G PT+
Sbjct: 11 CQRCNKGV-FLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR DR AF +
Sbjct: 69 AMHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ +L L + ++ IY+K D+ RGR+ L+AA LY ACR + PRT+
Sbjct: 129 LKTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTL 182
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNS-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNK-ARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ D+L L + ++A IY+K ++K RGR+ A++A+ LY ACR + PRT+
Sbjct: 129 LKDKLSLSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTL 182
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 193
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGLVLE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 202
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 193
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 185
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T V+ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 193
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 185
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG
Sbjct: 40 TETKCPECGSK-KLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N A L +WQ + +R L A
Sbjct: 98 PITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALS 157
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+
Sbjct: 158 ELDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTL 215
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 193
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 21 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 79
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 80 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 139
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 140 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 189
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T +FD+ G +C++CG V+ H ID EWR F E + R GGP N L ++
Sbjct: 46 TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGPLNRLTSEALT 104
Query: 73 STVIAKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
+T+ ASG+ L +WQ R ++ +R +I A ++ +S +LG+
Sbjct: 105 TTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSRISSQLGIP 164
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
D A IY++V + RGR+ +A++AACL++ACR+ PR++
Sbjct: 165 KACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSL 210
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVRVGGPT 63
C +CK+ +V +H G VC CGLV S ID++SEWRTF++E+ G ++P RVGG
Sbjct: 91 CDECKRAM-LVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKL 149
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NP L++ G+ T + GA S + +W +R S D+ + + I + L L
Sbjct: 150 NPYLSNHGIDTQVTG-KGA------SEIQKWSDRSSLTAKDKLITQGLRMIKEQAHLLNL 202
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+A+EIYK++ED+ +G++ +A ++ A R +P+++K
Sbjct: 203 KEAAITKASEIYKEIEDRGILKGKSVKGKVAGAIFFASRLVGQPKSLK 250
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K+ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNA-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNK-ARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ D+L L + ++A IY+K ++K RGR+ A++A+ LY ACR + PRT+
Sbjct: 129 LKDKLALSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTL 182
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 29 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 86 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 146 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 205
Query: 172 A 172
A
Sbjct: 206 A 206
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLE 193
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
IY++ D+ RGR+ + + ACLY ACR+E PR+++ A
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIA 206
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK H + +DH + VC++CGLVLE + +D EWR F + +N R G P +
Sbjct: 16 CPDCKGTHLKRDYDH--AEIVCADCGLVLEDNIVDTGPEWRAF-DMQQENALARAGPPMS 72
Query: 65 PLLADGGLSTVIAKPN--------GASGEFLSSSLGRWQNRG---SNPDRGLILAFKTIA 113
L D GLST I+ N + + + +WQ R + +R + +A + +
Sbjct: 73 TTLPDKGLSTEISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQ 132
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ L L I++ A IY++ ++S GR + + A LY ACRQE PRT+
Sbjct: 133 AVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTL 187
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C+ H D +G+ C CGLV E + ID EWR F +E D + RVG P
Sbjct: 24 DNICPECQGHITRTSD--SGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T L+ D GLST I + A G+ +S L W R D R L A
Sbjct: 81 TTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDERFRTKDAHERNLKQALGE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I+ M+ LGL ++++ A +Y++ +Q GR+ + + A LY A RQ PR +
Sbjct: 141 ISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPL 197
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V AG+TVC +CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----EAGETVCGDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+++A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVE 172
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDVVCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++
Sbjct: 144 EIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 TA 172
A
Sbjct: 204 IA 205
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC CG V+E + ID EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIA 176
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ ++ + G++ L+AA LYIA ED+ RT + A
Sbjct: 232 ILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVA 272
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T +FD+ G +C++CG V+ H ID EWR F E + R GGP N L ++
Sbjct: 46 TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGPLNRLTSEALT 104
Query: 73 STVIAKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
+T+ ASG+ L +WQ R ++ +R +I A ++ +S +LG+
Sbjct: 105 TTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSRISSQLGIP 164
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
D A +Y++V + RGR+ +A++AACL++ACR+ PR++
Sbjct: 165 KACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSL 210
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ A
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVA 199
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 202
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D GLS
Sbjct: 14 KIVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 72
Query: 74 TVIA-KPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + LGL
Sbjct: 73 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y +CR+ RT+ A
Sbjct: 133 KSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYASCRRIKIARTLDEIA 182
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FDH G+ VC E G V+E IDE +EWR F E + R GGP + D G +
Sbjct: 26 KIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERERR-ARTGGPITGTVHDMGFA 84
Query: 74 TVIAKPNG-ASGEFLS------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVA 123
T I + ASG + L +WQ R S+ DR L A + +++ L L
Sbjct: 85 TSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIAELLNLPT 144
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++
Sbjct: 145 HVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSL 189
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
K I+ ++ + GL K +A +I + E+ K S G++ L AA LY+AC
Sbjct: 216 IKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVAC 266
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 31 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 172 A 172
A
Sbjct: 208 A 208
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVE 172
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVE 172
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVE 172
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QNDLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 143 GEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLD 202
Query: 170 GTA 172
A
Sbjct: 203 EIA 205
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVCSECGLV+E ID EWR F + D RVG PT
Sbjct: 30 VCPEC--GGDLVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 147 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSL 201
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VCS+CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 176
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++ ++ + G++ L+AA LYIA E + RT + A
Sbjct: 232 LLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
I M+ +GL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 144 EIDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 TA 172
A
Sbjct: 204 IA 205
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 A 172
A
Sbjct: 205 A 205
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVE 172
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ V + +C +CGLVL+ +ID EWR F N S + RVG PT
Sbjct: 97 LCPECESEAIV---QDGDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGAPTT 152
Query: 65 PLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G LSS L WQ R D R L A +
Sbjct: 153 QTMHDKGLTTQIDWKNKDAYGNSLSSRKREQMSRLRTWQERVRTKDAGERNLQFALSEMD 212
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ + ++ A+ IY++ ++ RGR+ + + CLY ACRQE PR++ A
Sbjct: 213 RMASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVA 271
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A +Y++ D+ RGR+ + + + LY ACR E PR+++ A
Sbjct: 119 RMASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVA 177
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + ++ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
K I+ ++ + GL K +A +I + E+QK S G++ L AA LY+AC
Sbjct: 216 VKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVAC 266
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 35 CPECGSE-KLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 92
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 93 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 153 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 210
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
K I+ ++ + GL K +A +I + E+ K S G++ L AA LY+AC
Sbjct: 216 IKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVAC 266
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECDSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSL 193
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P ++ D G
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPMTLMIHDKG 73
Query: 72 LSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LST I N +G + + L WQ R D R L A + M+ +L
Sbjct: 74 LSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLR 133
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 134 LPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 181
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 12/171 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C T V++D + G+ VC CG V+ES +ID EWR+F +E D R+G P +
Sbjct: 12 CPSCG-STSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDER-DEGKGRMGSPLSY 69
Query: 66 LLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSD 117
D G STVI K N F L +WQ R S +R L A + S+
Sbjct: 70 AKYDKGTSTVIGKASESIKLSNANRRTFY--KLRKWQPRISTAYERNLKFALTELRHASN 127
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
RL + I++ A ++Y++ ++ RGR+ ++++A LY A R+ ++P T+
Sbjct: 128 RLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITL 178
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ T +V D + VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 24 LCPECETDT-IVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 81
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 82 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 141
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++
Sbjct: 142 RMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLE 197
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V +G+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----ESGETVCNDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L I+++A +++ +++ RGR+ + AAC+Y ACR R+V+
Sbjct: 124 LPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVE 172
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE FD + G+ VC CG VLE + IDE EWR F + R G P ++ D GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGL 121
ST I N +G + S L WQ R D R L A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSA--GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ C +C+ + F SA G+ VC +CGL+LE +ID EWR F N + RVG
Sbjct: 38 ERVCPECESAS---FIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVG 93
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I N ASG LS+ L +WQ R D R L A
Sbjct: 94 APTTQTMHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFAL 153
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ RGR+ +A+ LY ACR+E PR+++
Sbjct: 154 SETDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLE 213
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ A
Sbjct: 147 RMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIA 205
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 11 CPECGSE-KLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 68
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 69 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 129 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 186
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK HT +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECKSHT-LVRDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A +Y+K D+ RGR+ + + AA LY ACRQ + PRT+ A
Sbjct: 159 MASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIA 216
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 A 172
A
Sbjct: 202 A 202
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 A 172
A
Sbjct: 202 A 202
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ VC +CG+V+ES +ID EWR F D + RVG PT
Sbjct: 31 CPECGGT--VTTDDGRGERVCEQCGIVVESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
LL D GLST I ASG LSSS L W R + DR L A I
Sbjct: 88 LLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSL 201
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+TVC +CGLV+E + ID EWR F N S N RVG PT
Sbjct: 19 CPECESDA-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + + LY A R D PR++
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSL 190
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC +CGLV+E + ID EWR F N + N RVG PT
Sbjct: 19 CPECESES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSTEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + + LY A R D PR++
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSL 190
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 74
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + LGL
Sbjct: 75 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 134
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ A
Sbjct: 135 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIA 184
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E +D EWR F N S RVG PT
Sbjct: 26 CPECGSKN-LVNSADQSELVCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACRQE PR+++ A
Sbjct: 144 MASALGVPRSVREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEVA 201
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 4 AFCSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
A C +C ++ V HS G+ +C +CGLVLE ID EWR F ++ RVG P
Sbjct: 24 ATCPEC--DSDNVVQHSDPGERICKDCGLVLEESMIDSGPEWRAFDHQERQQKS-RVGAP 80
Query: 63 TNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 81 TTQTMHDKGLTTQIDWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ +++ + IY++ + RGR+ + + A LY CRQE PR+++
Sbjct: 141 IDRMASALGVPRAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 198
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
+++++D+ G+ C+ CG V+ ID EWR F + S N R G P + L+ D GL
Sbjct: 16 SKLIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAF-DVSQRNKRSRTGAPESILIHDKGL 74
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R G DR L A + ++ +L L +K+
Sbjct: 75 STNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLKLPRYVKE 134
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 135 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTL 175
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 15 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 73
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + LGL
Sbjct: 74 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ A
Sbjct: 134 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIA 183
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ A
Sbjct: 151 MASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIA 208
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTGENFCGKCGFVITDKVDESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
K I+ ++ + GL K A +I + E+QK S G++ L AA LY+AC
Sbjct: 216 VKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVAC 266
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSL 193
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+ E + R G PT+
Sbjct: 11 CPRCGKAT-LVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRS-RAGVPTSL 68
Query: 66 LLADGGLSTVIA--------KPNGASGEFLSSSLGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I KP AS + L W +R P DR AF +
Sbjct: 69 AMHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ D+L + T+ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K A
Sbjct: 129 LKDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIA 186
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ + C +C +++ DH + VC +CGLV++ ID EWR F +E + RVG
Sbjct: 6 LKGSVCPECGSE-DLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKR-TRVG 63
Query: 61 GPTNPLLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAF 109
P + D GLST+I K A L +WQ + +R L A
Sbjct: 64 APVTYTIHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFAL 123
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ ++ RL L T+++ A+ IY+ +K RGR+ + ++AA LY ACR+ + PRT+
Sbjct: 124 SELDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTL 182
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ A
Sbjct: 151 MASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIA 208
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 6 CSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
CS+C V HS G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 25 CSECGSSN--VLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVGAPTT 81
Query: 65 PLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 QTIHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFALSEID 141
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ + ++ + +Y++ ++ RGR+ + + A LY CRQE PR+++
Sbjct: 142 RMASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLE 197
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE FD + G+ VC CG VLE + +DE EWR F + R G P ++ D GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGL 121
ST I N +G + S L WQ R D R L A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 27 CDECGGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A +Y++ D+ RGR+ + + + LY ACR E PR+++
Sbjct: 145 MASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLE 199
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++ A
Sbjct: 119 RMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVA 177
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
V D G+ VC +CG+VLES +ID EWR F D + RVG PT LL D GLST
Sbjct: 38 VTTDDGHGERVCEQCGVVLESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTKLLHDEGLST 96
Query: 75 VIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVA 123
I ASG LS S L W R + DR L A I M+ LGL
Sbjct: 97 SIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDRMASALGLPE 156
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 157 NVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSL 201
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 31 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++
Sbjct: 148 IDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 172 A 172
A
Sbjct: 208 A 208
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC++CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAF-DASQRERRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L RWQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ +A E
Sbjct: 178 ISRVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 27 VCPECG--GDLVTDSERGETVCAECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 84 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 144 RMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSL 198
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 A 172
A
Sbjct: 202 A 202
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 A 172
A
Sbjct: 202 A 202
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D G
Sbjct: 13 QDKIIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRG 71
Query: 72 LSTVIA-KPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
LST+I K A G L +WQ R S+ DR L A + + + LG
Sbjct: 72 LSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLG 131
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L ++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ A
Sbjct: 132 LPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIA 183
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSL 193
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 14/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + ++ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
K I+ ++ + GL K +A +I + E+QK S G++ L AA LY+AC
Sbjct: 216 VKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVAC 266
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 26 VCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 84 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++ A
Sbjct: 144 RMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVA 202
>gi|269866459|ref|XP_002652280.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062817|gb|EED41774.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 175
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACL 155
TI D+A I+K VE +K +GR + + AC+
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGRIRRC-MGACI 159
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ RGR+ + + + LY ACR+E PR+++
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLE 203
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+D C +C + +V D G+T+C +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QSDLACPECAGN--LVVDDEHGETICEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++
Sbjct: 143 GEIDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+S ++GL +++ A IY+K ++ RGR+ ++++AA +Y ACR+ PRT+ A
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVA 192
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ RGR+ + + + LY ACR+E PR+++
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLE 203
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECD-STALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 202
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N RVG PT
Sbjct: 29 CPECASDN-LVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + A LY ACR+E PR+++
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLE 201
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECDSEN-LVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 145 MASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLE 199
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+S ++GL +++ A IY+K ++ RGR+ ++++AA +Y ACR+ PRT+ A
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVA 192
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C C + V +D S G+ VC CG V+E +ID EWR+F +E D R+G P
Sbjct: 9 NAKCPSCGSES-VTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDER-DEGKGRMGSP 66
Query: 63 TNPLLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIAT 114
+ D G STVI K N F L +WQ R S +R L A +
Sbjct: 67 LSYAKYDKGTSTVIGKASESIKLSNANRRTFY--KLRKWQPRISTAYERNLKFALTELRR 124
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
S+RL + I++ A ++Y++ ++ RGR+ ++++A LY A R+ ++P T+
Sbjct: 125 ASNRLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITL 178
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECSSDN-LVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 198
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D + +T C +CG VLES ID EWR F + ND RVG P
Sbjct: 35 CPECSGR--IVHDEAQAETHCQDCGRVLESDQIDRGPEWRAF-DSREKNDKSRVGAPQTQ 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
L D GLSTVI + A G LSS L +W R +N +R L A I
Sbjct: 92 QLHDRGLSTVIDWRDEDAYGRSLSSLQRKKMRRLRKWDERFRTKNNRERNLKQALGEINR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG I++ + +Y++ ++ RGR+ + + A LY R E+ PRT+ A
Sbjct: 152 MASALGCPDPIRETTSVLYRQALEKDMLRGRSVEGMATAALYAGSRLENAPRTLDDVA 209
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA+++ +DP R G P D GLST I
Sbjct: 23 HAEGRETVCGDCGLVVSEYAIDHGPEWRSFADDA--SDPKRTGAPLTRSRHDRGLSTEIG 80
Query: 78 KPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+ G + L R NR + +R + AF I ++ L L I+D A +
Sbjct: 81 RSTRLKGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIRDHACSL 140
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ + + RGR+ + AAC+Y ACR + RTV
Sbjct: 141 FRSAQKEDLLRGRSLEGFAAACVYAACRAANVSRTV 176
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ +C CG V+E + +D EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y +CR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIA 176
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LG+ ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGMSERVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ D+ + G++ L+AA LYIA ED+ RT + A
Sbjct: 232 ILEEAYDRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVA 272
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 45 CPECGGRTRV----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 98
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 99 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 158
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +D+ RGR+ + AACLY+ACR D RTV
Sbjct: 159 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACLYVACRTADVARTV 206
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D S G+ VC CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 176
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + ++ +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVSKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++ ++ + G++ L+AA LYIA E + RT + A
Sbjct: 232 LLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVA 272
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ A
Sbjct: 147 RMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIA 205
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+T C ECGLV+ ID EWR F N + D RVGGPT L D GLSTVI
Sbjct: 52 DETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGLSTVID 110
Query: 78 KPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
N A G LSS L W R + D R L A + M+ LGL ++
Sbjct: 111 WQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGLPEAVR 170
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ A+ +Y++ D RGR+ + + +A LY RQ PR++
Sbjct: 171 ETASVVYRQALDADLLRGRSIEGVASASLYAGARQMGTPRSL 212
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ V + +C +CGLVL+ +ID EWR F N + + RVG PT
Sbjct: 28 CPECESDAIV---QDGDELLCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ + ++ A+ IY++ ++ RGR+ + + CLY ACRQE PR++ A
Sbjct: 144 MASALGVPRSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVA 201
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSL 195
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D S G+ VC CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 176
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + ++ +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVSKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++ ++ + G++ L+AA LYIA E + RT + A
Sbjct: 232 LLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVA 272
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 16/176 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDET-SEWRTFANESGDNDPVRVGGPTN 64
C C + T +V D + + C +CG V+ + +DE+ EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTAENFCGKCGFVI-TEKVDESGPEWRSFSNE-GENKS-RAGVPTS 66
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 182
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K A +I + E+QK S G++ L AA LY+AC + +T
Sbjct: 216 VKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQ 275
Query: 169 KGTA 172
+ A
Sbjct: 276 RDVA 279
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ +C CG V+E + +D EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y++ + RGR+ ++++AAC+Y +CR PRT+ A
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIA 176
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ ++ + G++ L+AA LYIA ED+ RT + A
Sbjct: 232 ILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVA 272
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ +CS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 14 CPECG-SSQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESR-ARTGSPMTY 71
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R + +R L A + +
Sbjct: 72 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 131
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +++ A IY+K Q RGR+ + ++A +Y ACR + PRT+
Sbjct: 132 MTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTL 185
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK++ +V + SAGDT+C CG VL +ID G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLAERTID---------THQGNDDPSRIGDAA 87
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
NPLL L T I +G L R N+ SN D+ L A+ I + D
Sbjct: 88 NPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCDSQN 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + A ++K +D K +G++QDA++A C++IACR+ D+ R+ +
Sbjct: 144 ISRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFR 192
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +K+ A IY+K Q RGR+ + ++A LY ACR + PRT+
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTL 187
>gi|408404447|ref|YP_006862430.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365043|gb|AFU58773.1| putative transcription initiation factor IIB [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 313
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+ C + +VFD + VCS CG+V++ + EWR+++ E ++ R G P++
Sbjct: 21 CALCNSKS-IVFDSETSEAVCSSCGMVIKDNIESMGPEWRSYSGEDIESKS-RTGMPSSL 78
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIAT 114
D GLST I+ N A+G +S+ + RW SN R L AF ++T
Sbjct: 79 AFHDMGLSTFISYSNVDANGVAISAEQRSKVQRMRRWNKISSNNRSYHRNLKNAFAILST 138
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ D+L L T+ ++A Y+K D+K +GR+ AL+ A +Y ACR PRT++
Sbjct: 139 IKDKLSLSDTLIEKAAYNYRKALDKKIIKGRSIRALIVAAVYAACRDLSVPRTLE 193
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ A
Sbjct: 149 RMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIA 207
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSL 195
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV++ + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSET-LVSDSEHGETVCDECGLVVQENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ + GR+ + + A LY + R PR++
Sbjct: 167 MASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSL 220
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C + +++D S + VCS CG VL +D EWR F E G + RVG P
Sbjct: 10 CPICGSES-LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAF--EPGQREKRSRVGAPET 66
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+L D GLST I N G +S S L WQ R DR L A +
Sbjct: 67 VMLHDKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELD 126
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M +LGL I++ A +Y+K K RGR+ + +++ACLY ACR + PRT+
Sbjct: 127 RMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTL 181
>gi|241842222|ref|XP_002415383.1| transcription initiation factor iib, putative [Ixodes scapularis]
gi|215509595|gb|EEC19048.1| transcription initiation factor iib, putative [Ixodes scapularis]
Length = 159
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 75 VIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L TI DR+N +
Sbjct: 1 MIGKGTG-DASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNLL 59
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 60 FKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFK 96
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 201
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ A
Sbjct: 149 RMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIA 207
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF-ANESGDNDPVRVGGPTNPLLADGG 71
+++D G+ VC+ CG V+ + ID EWR F A++ RVG P ++ D G
Sbjct: 16 VRLIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRG--RVGAPMTMMIHDKG 73
Query: 72 LSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LS+ I K G +S + L +WQ R D R L A + M+ +LG
Sbjct: 74 LSSTIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLG 133
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L IK+ A +Y+K ++ RGR+ + + AACLY ACR PRT+
Sbjct: 134 LPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTL 181
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECDARLEADSEH--GETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIER 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + A LY A RQ PR++
Sbjct: 147 MASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSL 200
>gi|25396143|pir||C88922 protein W03F9.5 [imported] - Caenorhabditis elegans
Length = 148
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 K 126
+
Sbjct: 125 Q 125
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
+ D G+TVC ECG+VLE +D EWR+F + RVG PT +L D GLS+V
Sbjct: 44 ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTEMLHDKGLSSV 102
Query: 76 IAKPNG-ASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVAT 124
I N A+G+ LS S L W R S DR L A I M+ LG+
Sbjct: 103 IDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDRMASALGIPKD 162
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ A+ IY++ D++ GR+ +A+ LY RQ PRT+
Sbjct: 163 ARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTL 206
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 7/148 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 24 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDA 149
+ D A ++K V+D K+ +G++QDA
Sbjct: 140 QKIVADTAKYLFKIVDDHKAFKGKSQDA 167
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +H G+TVC++CGLV+E ID EWR F + D + RVG P
Sbjct: 24 DLTCPECDGRLQADTEH--GETVCADCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSS L W R D R L A
Sbjct: 81 TTKMMHDEGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ LGL +++ A+ IY++ D+ GR+ + + A LY A +Q PR++
Sbjct: 141 IERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSLDEV 200
Query: 172 A 172
A
Sbjct: 201 A 201
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V+D G+ +C++ G V+ H ID EWR F E + R G P N L D GLST
Sbjct: 22 IVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRS-RAGAPINIALHDSGLST 80
Query: 75 VI-AKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVA 123
VI ++G L + +W +R S DR ++ A + ++D+L L
Sbjct: 81 VIDWYDRDSAGRRLDLKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLPR 140
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I + A IY++ +++ RGR ++++AA LY ACR PRT+
Sbjct: 141 VIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTL 185
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V + C +CGL+LE +ID EWR F ++S + RVG PT
Sbjct: 27 CPECDSSS-LVRSADESEVSCEDCGLILEEETIDRGPEWRAF-DQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 202
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
H ++V+D G+ VC + G V+E IDE EWR F E R GGP + D G
Sbjct: 15 HDKLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERGRR-ARTGGPLTTTVHDMG 73
Query: 72 LSTVIAKPNG-ASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
+T I N A+G L L +WQ R ++ DR L A + + D L L
Sbjct: 74 FATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGDLLNL 133
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ +K+ A IY++ ++ RGR+ ++++AA +Y+ACR+ PR++
Sbjct: 134 PSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSL 180
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ A
Sbjct: 149 MASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVA 206
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGAS 83
+C +CGLVL+ ID EWR F N S RVG P + D GL+T I K A
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 84 GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIY 133
G LSS L +WQ R D R L A I M+ LG+ ++++ A+ IY
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 119
Query: 134 KKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++ ++ RGR+ + + + LY ACRQE PR++ A
Sbjct: 120 RRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVA 158
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSL 196
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT
Sbjct: 1 MCPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTT 57
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST+I + A G +S L +W R D R L AF I
Sbjct: 58 QLMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIR 117
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL I++ A +Y++ + GR+ + + A LY A RQ PRT+
Sbjct: 118 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTL 172
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S N RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LG+ ++++ A+ +Y++ + RGR+ + + + LY ACR E PR++
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSL 198
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSL 196
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ VCS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 15 CPECG-SSQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESR-ARTGSPMTY 72
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R + +R L A + +
Sbjct: 73 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +++ + IY+K Q RGR+ + ++A +Y ACR + PRT+
Sbjct: 133 MASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTL 186
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+ C CGLV++ + +D EWR F NE D RVG P
Sbjct: 29 CPECGSE-QIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKR-TRVGAPMTY 86
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 87 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 147 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIA 204
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DAAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 164
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV
Sbjct: 165 LPDSVRDTACTLFASAQDESLLRGRSLEGFAAACVYVACRTADVARTV 212
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + V+ D G+TVC+ECGLV+E S+D EWR F ++ D RVG PT
Sbjct: 31 VCPECGGN--VISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKS-RVGAPTT 87
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G L S L W R D R L A I
Sbjct: 88 KMMHDKGLSTNIGWQDKDAYGNTLGSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 147
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D GR+ + + + +Y A RQ PR++ A
Sbjct: 148 RMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVA 206
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F E R GGP + D G +
Sbjct: 28 KIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERGRR-ARTGGPVTAAVHDMGFA 86
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + ++D L L +
Sbjct: 87 TSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPS 146
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A IY++ D+ RGR+ ++++AA +Y+ACR+ PR++
Sbjct: 147 YVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSL 191
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT L+ D GLST
Sbjct: 56 VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTTQLMHDKGLST 114
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
+I + A G +S L +W R D R L AF I M+ LGL
Sbjct: 115 MIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIRRMASALGLPD 174
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I++ A +Y++ + GR+ + + A LY A RQ PRT+
Sbjct: 175 PIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTL 219
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC ECGLV+E + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSEA-LVSDSEHGETVCDECGLVVEENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ + IY++ + GR+ + + + LY A R D PR++
Sbjct: 167 MASALGLPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSL 220
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ RGR+ + + + LY ACR+E PR+++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLE 183
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE SID EWR F N + + RVG PT
Sbjct: 27 CPECD-STALARSADESEISCEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIA 202
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 30 CPEC--GGQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 147 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ RGR+ + + + LY ACR+E PR+++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLE 183
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA++ D +P R G P D GLST I
Sbjct: 24 HAEGQETVCGDCGLVVSEYTIDHGPEWRSFADD--DRNPKRTGAPLTQSRHDRGLSTEIG 81
Query: 78 KPNGASGEFLSSSLG--RWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+ G + NR + +R + AF I ++ L L I+D A +
Sbjct: 82 RSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTEIRRLTSALSLPERIRDHACSL 141
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K +++ RGR+ + AAC+Y ACR + RTV
Sbjct: 142 FKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRTV 177
>gi|448626518|ref|ZP_21671297.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445760130|gb|EMA11394.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 339
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSHA-LVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A IY+K D+ RGR+ + + AA LY ACRQ + PRT+ A
Sbjct: 159 MASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIA 216
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVCS CGLV+E + ID EWR F + D RVG PT
Sbjct: 31 CPECGGRLETDTEH--GETVCSACGLVVEENEIDRGPEWRAFDSAERDQKS-RVGAPTTT 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 148 MASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 201
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D G+TVC ECGLV+E ID EWR F D RVG PT ++ D GLST
Sbjct: 35 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTTNMMHDKGLST 93
Query: 75 VIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS L W R D R L A I M+ LGL
Sbjct: 94 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 153
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 154 NVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSL 198
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+++ ID EWR+FA++ D +P R G P
Sbjct: 55 CPECGGRTRV----DSSERVCTDCGLVVDADRIDHGPEWRSFADD--DTNPKRTGAPLTR 108
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ LG
Sbjct: 109 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALG 168
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +D+ RGR+ + AAC+Y+ACR RTV
Sbjct: 169 LPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVARTV 216
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ L L I+D A +++ + + RGR+ + AAC+Y ACR RT++
Sbjct: 137 LTGALSLPKQIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIE 191
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
+ VC +CGLV+E ID EWR F N RVG PT + D GL+T I K
Sbjct: 8 AELVCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 66
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 67 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 126
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 127 VIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 165
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ ID EWRTF +++ R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRTF----DEDECKRTGAPLTAARHDRGLSTEIGRR 89
Query: 80 NGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
A+G LSS L R Q+RG S +R L + +S L L T++D+A
Sbjct: 90 TDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNLAHGLGEVRRISSALELSETLRDQA 149
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ +++ RGR+ +A+ AA +Y ACR +PRT+
Sbjct: 150 CRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTL 188
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D + G+TVC +CGLV+E+ ++D EWR F N S + RVG PT
Sbjct: 34 VCPECGGS--LITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTT 90
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G+ LS+ L W R ++ +R L A I
Sbjct: 91 RMMHDKGLSTNIGWQNKDAYGKALSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 150
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++
Sbjct: 151 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSL 205
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D G+TVC ECGLV+E ID EWR F D RVG PT ++ D GLST
Sbjct: 40 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTTNMMHDKGLST 98
Query: 75 VIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS L W R D R L A I M+ LGL
Sbjct: 99 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 158
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 159 NVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSL 203
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
++ L L I+D A +++ + + RGR+ + AAC+Y ACR RT++
Sbjct: 137 LTGALSLPKQIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIE 191
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+ +C ECG V++ IDE++EWR F E + R G P D G+ST I
Sbjct: 69 DSAKGELICIECGFVMDEDRIDESAEWRAFNAEEKEKK-ARAGQPLTYTKHDMGVSTEIG 127
Query: 78 KPNGASGEFLSSS---------LGRWQNR-GSNPDRGLILAFKTIATMSDRLGLVATIKD 127
K SGE S L +W R + DR L A + +M L L ++ +
Sbjct: 128 K---GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLNLPESVHE 184
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+Y+K DQ RGR+ +++++A +YI R++ PRT+
Sbjct: 185 ETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTL 225
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + + D G+TVC ECGLV+E ID EWR F + S ++ RVG PT
Sbjct: 28 VCPECGGN--LASDAEHGETVCEECGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 84
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++ A
Sbjct: 145 RMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIA 203
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPEC--NGSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +++ A IY+K Q RGR+ + ++A LY ACR + PRT+
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTL 187
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSL 193
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ CSECGLV++ ID EWR + N+ RVG PT
Sbjct: 26 CPECDGR--LTHDSEHGERACSECGLVVDEDEIDHGPEWRAHTQKER-NEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR--GSNP-DRGLILAFKTIAT 114
L+ D GLST I+ + A G LSS L W R NP +R L A I
Sbjct: 83 LMHDKGLSTKISWQDKDAYGNTLSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEIER 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
MS LGL ++++ A IY++ ++ GR+ + + A L+IA RQ + PR++
Sbjct: 143 MSSALGLPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSL 196
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T VV D + VC ECGLVL ID EWR F + + RVG P
Sbjct: 21 CPDCETET-VVHDPDRRELVCEECGLVLSDEPIDYGPEWRAF-DAREHEELSRVGAPLTQ 78
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNP---DRGLILAFKTIAT 114
+ D GL+T I N A+G + + L WQ R +R L A I
Sbjct: 79 SMHDRGLTTTIDWRNRDANGHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 138
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +K+ A+ IY++ D+ RGR+ + + + LY++CR++D PR+++
Sbjct: 139 MVSALGVPKPVKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLE 193
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+ S+D EWR F ++ D RVG PT
Sbjct: 57 CPECAGN--VVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKDQKS-RVGAPTTN 113
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS+ L +W R D R L A I
Sbjct: 114 TMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 173
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C+Y A R PR++
Sbjct: 174 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSL 227
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 36 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 93
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 153
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++
Sbjct: 154 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSL 207
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ GL ++++ A+ IY++ + GR+ + + + LY A RQ + PR++
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 172 A 172
A
Sbjct: 206 A 206
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DAAERVCDDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTDIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMG 170
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ + + RGR+ + AAC+Y+ACR D RTV
Sbjct: 171 LPDSVRDAACALFDSAQSESLLRGRSLEGFAAACVYVACRTADVARTV 218
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSL 193
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 29 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++ A
Sbjct: 146 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIA 203
>gi|357116817|ref|XP_003560173.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 331
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 32/192 (16%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----SGDNDPVRVG 60
+C C++ T V D TVC+EC LVL +DE+ EWRTF N ++ RV
Sbjct: 10 YCKGCRRVTAVTVD-----TVCTECSLVLNERYVDESLEWRTFLNHGTPAEAEDSSSRV- 63
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ----------------NRGSNPDRG 104
+ L + L T ++ P + + ++L R + + DR
Sbjct: 64 --DDHFLTNLQLGTGVSGPAASGNAQMKTALPRMRGAGAGGSGVATAKTRGAAAAASDRA 121
Query: 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS----SRGRNQDALLAACLYIACR 160
L AF + M+++LGL +KDRA E+ +K+E K+ + RN+ AL AACL++ACR
Sbjct: 122 LADAFHAMDGMAEQLGLATAVKDRAKEVLRKLEVAKAFPKGGKCRNRRALYAACLHMACR 181
Query: 161 QEDKPRTVKGTA 172
E PRT K A
Sbjct: 182 DEGTPRTFKELA 193
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGR---WQNR----GSNPDRGLILAFKTI 112
G P L D G+ST+I + SG + + R W R GS +R AF +
Sbjct: 67 GEPVKLRLPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSR-ERNFFQAFLEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++ +L L ++++ A IY+K + RGR +++L A ++ AC++ PRT + A
Sbjct: 126 ENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIA 185
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ CS CG V++ +D EWR +E G RVG P
Sbjct: 10 ALCPECGNEM-LVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGSRS--RVGAPL 66
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNR----------GSNPDRGLILAFKTI 112
+P+ D GLSTVI + ASG LS R S+ R L A +
Sbjct: 67 SPMYRDHGLSTVIEGVDEDASGRKLSKETREKMIRLKKLDATSQINSSETRNLQQAVNIL 126
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D+L L T+ +RA IY++ RGR+ +++AA Y ACR PR ++
Sbjct: 127 QIYVDKLRLSQTVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRMLGTPRDLR 183
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSL 193
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DGAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMG 170
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 171 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 218
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGS--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|55378764|ref|YP_136614.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637593|ref|ZP_21675831.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651893|ref|ZP_21680906.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55231489|gb|AAV46908.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764440|gb|EMA15595.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445769296|gb|EMA20370.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 339
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC +CGLV++ + +D EWR F +E D RVG P + D GLST+I
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMID 83
Query: 78 KPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N A L +WQ + +R L A + S RLGL +++
Sbjct: 84 WRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRSVR 143
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A+ +Y++ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 144 EAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIA 189
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ A
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQANLPQTLDDMA 204
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 26 VCPEC--GGDLVADSERGETVCEDCGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 82
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 83 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 142
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++
Sbjct: 143 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSL 197
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S + RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEISCEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ + RGR+ + + + LY ACR E PR++ A
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 202
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+TVC++CGLV+ S+D EWR F + S N+ RVG PT
Sbjct: 31 CPECS--GQLVADDEHGETVCADCGLVVAEDSVDRGPEWRAF-DASEKNEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ +GL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++
Sbjct: 148 MASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+ V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLS
Sbjct: 14 KFVYDPERGEIICANCGFVIQENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLS 72
Query: 74 TVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDR 128
T I G L +WQ+R D R L A + + RL L +++
Sbjct: 73 TDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEE 132
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
A +Y+ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 133 AARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 176
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 207
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ D + G+ VC ECG +++ ID+++E+R F NE+ R G P
Sbjct: 61 CPECESQR-FEEDSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPLTY 118
Query: 66 LLADGGLSTVIAKPNG----ASGEFLSS--SLGRWQNR-GSNPDRGLILAFKTIATMSDR 118
D G+ST I K +G SGE + L +W R + DR L A + +M
Sbjct: 119 TKHDMGVSTEIGKGSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISN 178
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L L ++ + +Y+K DQ RGR+ +++++A LYI R++ PRT+
Sbjct: 179 LNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTL 228
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV+E ++D EWR F + D+ RVG PT
Sbjct: 35 CPECGS-TNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAFDSSERDSKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 93 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++
Sbjct: 153 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSL 206
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|326427942|gb|EGD73512.1| hypothetical protein PTSG_05216 [Salpingoeca sp. ATCC 50818]
Length = 370
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 11 KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDN-DPVRVGGPTNPLL 67
KH VV D+ AGD VCSECGLV+ +D SEWR+F N + DN D RVG + LL
Sbjct: 29 KHAPVVEDYRAGDMVCSECGLVVGDRVVDVGSEWRSFGNSDKKKDNKDRSRVGLEEDVLL 88
Query: 68 -ADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
D GL T+ A PN + + RWQ+R S R L + IA ++ +L L
Sbjct: 89 EGDQGL-TISAIPNCPNADV---PWMRWQSRMGPSGSTRTLKSVYGKIANLASKLSLTDQ 144
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
+ A I+K+VE+ + + R+ D+ AA +YIACR
Sbjct: 145 VVTTAKAIFKEVEETGAVKTRSHDSCAAASVYIACR 180
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPR 166
M LGL +++ A +Y++ + GR+ + + A LY A RQ+ PR
Sbjct: 176 MGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPR 227
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M LGL +++ A +Y++ + GR+ + + A LY A RQ+ PR +
Sbjct: 176 MGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPL 229
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 61 CPECGGRTRV----DGAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 114
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 115 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 174
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV
Sbjct: 175 LPDSVRDAACALFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTV 222
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSL 207
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSL 207
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 30 HCPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKD-EKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++
Sbjct: 147 RMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSL 201
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ LGL
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALGLPD 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+++ A+ IY++ + GR+ + + +C+Y A RQ PR++ A
Sbjct: 151 NVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 199
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD +L +D SEWRTFA + +DP RVG
Sbjct: 76 ICPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 127
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 128 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 185
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +
Sbjct: 186 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQ 240
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 12/173 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D + G+ +C+ CG V+ ID+ +EWR F E + RVG P +
Sbjct: 29 CPNCG-STRLIYDATRGEIICANCGYVMSEREIDQGAEWRAFTPEEREKRS-RVGAPISR 86
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
+ ++ + A+G +S L +WQ R S+ +R L A + +
Sbjct: 87 YGVESLVTDIDWGGRDAAGREISLRKRIEMLRLRKWQVRARAQSSMERNLAQAVIELERL 146
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+LGL + DRA +IYK D RGR+ ++++AA +Y ACR+ PRT+
Sbjct: 147 GAQLGLPKAVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTL 199
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ + VC +CGLV++ + +D EWR F +E D RVG P
Sbjct: 14 CPECGSE-DLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 71
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 72 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 131
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y++ + K RGR+ + ++AA LY ACR + PRT+ A
Sbjct: 132 DSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIA 189
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D+ RVG PT
Sbjct: 30 CPEC--GGQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ A
Sbjct: 147 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 20 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKS-RVGAP 77
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 78 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 137
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++
Sbjct: 138 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSL 194
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 29 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKS-RVGAP 86
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 87 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 146
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++
Sbjct: 147 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSL 203
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSL 207
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + VV D G+TVC++CGLV+ S+D EWR F D RVG P
Sbjct: 23 DLTCPECGGN--VVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKDQKS-RVGAP 79
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 TTNTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGE 139
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ D GR+ + + +C+Y A R PR++
Sbjct: 140 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSL 196
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+ V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLS
Sbjct: 14 KFVYDPERGEVICANCGFVIQENMIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLS 72
Query: 74 TVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDR 128
T I G L +WQ+R D R L A + + RL L +++
Sbjct: 73 TDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEE 132
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RG++ ++++AAC+Y ACR PRT+
Sbjct: 133 AARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTL 172
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRN-LVQDYERAELVCSECGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DSAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 164
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV+
Sbjct: 165 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVE 213
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 30 VCPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++
Sbjct: 147 RMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSL 201
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GLV+E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG PT
Sbjct: 32 CPECS--GTLVVDDEHGETVCEDCGLVVETDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 89 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ +GL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++
Sbjct: 149 MASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSL 202
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 172
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 173 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 211
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 34 EQICPECGGN--LVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 90
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 91 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 150
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++
Sbjct: 151 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSL 207
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 31 CPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++
Sbjct: 148 MASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSL 201
>gi|15236883|ref|NP_192806.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|3600041|gb|AAC35529.1| contains similarity to transcription factor TFIIB repeat domains
(Pfam: transcript_fac2.hmm, score: 49.16) [Arabidopsis
thaliana]
gi|4539446|emb|CAB40034.1| putative protein [Arabidopsis thaliana]
gi|7267766|emb|CAB81169.1| putative protein [Arabidopsis thaliana]
gi|39545886|gb|AAR28006.1| TFIIB6 [Arabidopsis thaliana]
gi|332657516|gb|AEE82916.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 182
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +CK+ TE V ++ GDT+C ECG V+E++ ID+ G
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 46
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRL 119
TNP L G L T+I K +G S L+S L R QN + + + +A+ I M++ L
Sbjct: 47 TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 105
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
GL I + A +I K++ + G++ L AA + ACRQ + P+T+K
Sbjct: 106 GLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLK 155
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E +D EWR F + S ++ RVG PT
Sbjct: 29 HCPECGGR--LITDEEHAETVCTDCGLVVEEDEVDRGPEWRAF-DASEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECGGN--LISDTERGETVCTECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 87 MMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++
Sbjct: 147 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSL 200
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC+ECGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTECGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 33 EQVCPECGGN--LVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 89
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 149
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++
Sbjct: 150 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSL 206
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C +C ++ D +TVC++CGLV+E ID EWR F D RVG PT
Sbjct: 27 YCPECGGR--LISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 144 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 198
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVCS+CGLV++ + ID EWR F+++ D R G
Sbjct: 29 TERVCPECDGR--LVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R D R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
I M LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVED 205
Query: 171 TA 172
A
Sbjct: 206 VA 207
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 198
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
EVV D+ + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 45 EVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 103
Query: 74 TVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N S G+ LS++ L +WQ R D R L A + ++ +LGL
Sbjct: 104 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 163
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A IY+ D+ RGR+ + ++AA +Y ACR+ PRT+
Sbjct: 164 RHVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTL 209
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV+E+ ID EWR F + D RVG PT
Sbjct: 32 CPECGGRLAADTEH--GETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++
Sbjct: 149 MASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSL 202
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 31 CPECS--GQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++ A
Sbjct: 148 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIA 205
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 198
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V D +TVCS+CGLV+E+ ID EWR F + S + RVG P
Sbjct: 48 DHRCPECGG--SLVTDSEHAETVCSQCGLVVEADGIDHGPEWRAF-DASERDSKSRVGMP 104
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLS+ I + A G LSS L W R D R L A
Sbjct: 105 TTKMMHDKGLSSNIGWQDKDAYGRSLSSRQRQKMQRLRTWDERFRTRDSKERNLKQALGE 164
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PRT+
Sbjct: 165 IDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPRTM 221
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 201
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CG+V+E SID+ EWR F ++ D R G P +
Sbjct: 9 CPECGS-GHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAFDSDQ-DEKRARTGSPMSF 66
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 67 LSHDKGLATEISWSNRDYYGKRIPHKNRAQIYRVRKWHQRIRVSNASERNLSLALQLLND 126
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACRQ + PRT+
Sbjct: 127 DGSKLGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTL 180
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D RVG PT + D GLST
Sbjct: 30 VVQDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKDQKS-RVGAPTTNTMHDKGLST 88
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ GL
Sbjct: 89 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASAQGLPD 148
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++++ A+ IY++ ++ GR+ + + +C+Y A RQ PR++ A
Sbjct: 149 SVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 197
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + ++ D G+TVC ECGLV+E +D EWR F + S + RVG P
Sbjct: 33 EQVCPECSGN--LIHDDDHGETVCQECGLVVEDTIVDRGPEWRAF-DASERDSKSRVGAP 89
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 149
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++
Sbjct: 150 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSL 206
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE +ID EWR F N + + RVG PT
Sbjct: 27 CPECDSTT-LARSADGSEISCEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ +G+ ++++ A+ +Y++ ++ RGR+ + + + LY ACR E PR++
Sbjct: 145 MASAMGVPRSVREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIPRSL 198
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LS+ L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 148 MASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 201
>gi|349804613|gb|AEQ17779.1| putative general transcription factor iib isoform 2 [Hymenochirus
curtipes]
Length = 200
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 31/167 (18%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+ G L+T+I K G + EF +S ++QNR S+ DR ++ + IA + L LV
Sbjct: 75 LSGGDLTTMIGKGTGTASFDEFGNS---KYQNRRTMSSSDRAMMNTY--IARKAVELDLV 129
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
GR+ ++ AA +Y+A + + RT K
Sbjct: 130 P--------------------GRSPISVAAAAIYMASQASAEKRTQK 156
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 198
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + VV D G+T+C +CGLV+ S+D EWR F + D RVG PT
Sbjct: 70 VCPECSGN--VVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKS-RVGAPTT 126
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G LSS+ L +W R D R L A +
Sbjct: 127 NTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEVD 186
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++
Sbjct: 187 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSL 241
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVC+ECGLV++ + ID EWR F + + N+ R G
Sbjct: 30 TEQVCPECGGR--LVSDTEHGETVCNECGLVVDENEIDHGPEWRAF-DAAERNEKKRTGA 86
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT ++ D GLS+ I N A G LSS L W R ++ +R L A
Sbjct: 87 PTTKMMHDKGLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALG 146
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+
Sbjct: 147 EIDRMASALGVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMGLPRSVE 205
>gi|330040447|ref|XP_003239917.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206843|gb|AEA39019.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 341
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 18/178 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS C+ ++ D G+ +C +CGLV SH+ID +EWRTF+++ DP R+G ++P
Sbjct: 24 CSACQSEN-IIEDKKQGELICKDCGLVFASHTIDFNNEWRTFSSDQFKKDPSRIGSHSHP 82
Query: 66 LLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLIL--AFKTIATMSDRLGLV 122
L+ + ST I+K G G FL+ L + NR + L F + + ++ L
Sbjct: 83 LI-ELNRSTGISK--GLKGFNFLNERLIKSHNRTNIEKVNYFLNKIFVKNSLIIEKAFLP 139
Query: 123 ATIKDRANEIYKKVEDQKS-----SRGRN------QDALLAACLYIACRQEDKPRTVK 169
IK + E++K D + SR RN ++LAA + I CR E PRT +
Sbjct: 140 KFIKQKVEELFKLYFDHLTMRSDGSRTRNFLKKKETTSILAALILICCRNEGIPRTFR 197
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + IDE EWR F + R G P ++ D GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAF-DPDQRTKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 73 TDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMMLP 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D+ + VCS+CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LVQDYERAELVCSDCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 195
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ GR+ + + + LY A R PR++ A
Sbjct: 146 MASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMA 203
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GLVLE ID EWR F + S RVG PT + D GL+T
Sbjct: 45 VVKTADGELIHEPTGLVLEDEHIDRGPEWRAFTH-SERQSKSRVGAPTTQTMHDKGLTTQ 103
Query: 76 IA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVAT 124
I K A G+ +SS L +WQ R D R L A I M+ LG+ +
Sbjct: 104 IDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRS 163
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+++ A+ Y++ D+ RGR+ + A LY ACRQE PR++ A
Sbjct: 164 VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEVA 211
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC ECGLV+E +D EWR F + S + RVG PT
Sbjct: 35 VCPECGGN--LVQDDEHGETVCQECGLVVEDTVVDRGPEWRAF-DASERDSKSRVGAPTT 91
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++
Sbjct: 152 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSL 206
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H+E ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G P
Sbjct: 17 CPEC--HSEHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQ-DERRARTGSPMT 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 74 YLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLN 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ +LG+ IK+ + IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ A
Sbjct: 134 DIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIA 192
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D + G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 36 CPECSGN--LVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 93 LMHDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++
Sbjct: 153 MASALGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSL 206
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 54 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 107
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 108 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 167
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 168 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 215
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 60 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 113
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 114 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 173
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 174 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 221
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D G+ C CG V E R+F ++ G+ + R G T+ + D GLST
Sbjct: 20 LITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKE--RTGVGTSLTIHDQGLST 77
Query: 75 VIAKPN-GASGEFLSSSLGR-------WQNRGSNP--DRGLILAFKTIATMSDRLGLVAT 124
VI N A+G+ LSSS+ + W +R N DR AF + + D+L L +
Sbjct: 78 VINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDKLTLSDS 137
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++A IY+K ++K +GR AL+A+ LY ACR+ PRT+K
Sbjct: 138 VVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLK 182
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+A ++ ++G+ K A EI +K E+ + S G+N +L A LYI+CR+
Sbjct: 219 VARIASKIGISEKTKRIATEILRKAEESEISAGKNPMSLAATALYISCRK 268
>gi|448418768|ref|ZP_21579945.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
gi|445676162|gb|ELZ28686.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
Length = 321
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F +++ + + R G P
Sbjct: 27 CPECNGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSFEDDNSNRE--RTGAPLTA 80
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
D GLST I + G LS S L R Q RG S +R L + +
Sbjct: 81 ARHDRGLSTTIGRRTDGKGRTLSGSKRCQLARLRREQTRGRFQSKAERNLAHGLGEVRRV 140
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
+ LGL ++I+D+A ++++ + + GR+ +A+ AA +Y CR +P
Sbjct: 141 ASALGLASSIRDQACQLFRSAQREDLLLGRSIEAMAAASVYGVCRCHGRP 190
>gi|440802920|gb|ELR23836.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 371
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC ++ + D ++GDT+C +CGLV+ ID SEWR FA+ GD DP R +
Sbjct: 32 CHDCGT-SDFIEDFASGDTICLQCGLVVPDRIIDTRSEWRNFADNEGD-DPSRASR-ADE 88
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-----------LGRWQNRGS--NPDRGLILAFKTI 112
L GGL IA A ++ L R Q R DR ++ + T+
Sbjct: 89 SLPSGGLGCNIATSPPAQSAVSQTTTLRRPGSGGTQLARLQARSQTDKDDRKVLSGYATL 148
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++D + L I+ A E+Y ++ ++AL AA +Y+ACR+ PRT K A
Sbjct: 149 SHIADLIALPEKIRLIAKEMYSAFAAKRRKMLFKKNALEAAVIYMACREAKVPRTFKELA 208
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VISDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 198
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSL 207
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GL+LE ID EWR F N+S RVG P + D GL+T
Sbjct: 80 VVRTAEGELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQ 138
Query: 76 IA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVAT 124
I + A G LSS L +WQ R D R L A I MS LG+ +
Sbjct: 139 IDWRSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRS 198
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A+ +Y++ + RGR+ + + A LY ACRQE PR++
Sbjct: 199 VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSL 242
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
EVV D+ + VC++CG V++ + D EWR F +E RVG P + D GLS
Sbjct: 42 EVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 100
Query: 74 TVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N S G+ LS++ L +WQ R D R L A + ++ +LGL
Sbjct: 101 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 160
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ A IY+ ++ RGR+ + ++AA +Y ACR+ PRT+
Sbjct: 161 RHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTL 206
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G
Sbjct: 7 TPKRCPECNSE-HLIRDYEHGELICADCGAVIEDAYIDQGPEWRAFDSDQ-DERRARTGS 64
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P L D GL+T I+ N G+ + + +W R + +R L LA +
Sbjct: 65 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 124
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ + +LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+
Sbjct: 125 LLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTL 182
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 210
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 210
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD + G+ +C+E G VLE +D+ EWR + E +N G N + D GLS
Sbjct: 11 KIVFDANRGEYICTETGEVLEDKVVDQGPEWRAYTEE--ENRERSRAGTINLAVHDMGLS 68
Query: 74 TVIAKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRAN 130
T + A + L + Q R G++ R L+ A + + D LGL +K+ A
Sbjct: 69 TYM--DTRAKDRIKAMRLRKLQIRSRVGTSEQRNLVKAMTILERIIDNLGLPKAVKEEAA 126
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
IY+K ++K +GR+ + ++AA +Y ACR+ + P T+
Sbjct: 127 IIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTL 164
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ GR+ + + + LY A R PR++ A
Sbjct: 146 MASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMA 203
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|218199682|gb|EEC82109.1| hypothetical protein OsI_26126 [Oryza sativa Indica Group]
Length = 341
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLE--SHSIDETSEWRTFANESGDNDPVRVG-- 60
+C C++ T +V DH+ GD +C+ C L +++ E WR A +
Sbjct: 10 YCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSSS 69
Query: 61 --------GPTNPLLADG-GLSTVIAKP------NGA---SGEFLSSSLGRWQNRGSNPD 102
+PLL G G++ + P GA + + + R PD
Sbjct: 70 SVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPTKVRCGVPD 129
Query: 103 RGLILA--FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIAC 159
LA F IA M+ RLGL + DRA E+ +K+E+ ++ +GR++DAL AACL+ AC
Sbjct: 130 TSKALAEGFDAIAGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAAC 189
Query: 160 RQEDKPRTVK 169
R E PRT+K
Sbjct: 190 RVEGAPRTLK 199
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V D G+TVC +CGLV++ ID EWR F + D RVG PT
Sbjct: 37 LCPECSSPT-LVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERDQKS-RVGAPTT 94
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 95 NMMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 154
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL ++++ A+ IY++ + GR+ + + A L+ A R PR++ A
Sbjct: 155 RMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVA 213
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 210
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 210
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C +++ D G+TVC CGLV+E ID EWR F + D RVG
Sbjct: 24 SDVQCPEC--DGKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGA 80
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G L S L +W R D R L A
Sbjct: 81 PTTNMMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 140
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++
Sbjct: 141 EIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSL 198
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 210
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 200
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G+TVC++CGLV+ S+D EWR F N + + RVG PT
Sbjct: 24 CPECNGN--VITDEGHGETVCADCGLVVSEDSVDRGPEWRAF-NANEKDSKSRVGAPTTN 80
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 81 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + AC+Y A R PR++
Sbjct: 141 MASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSL 194
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + +DE EWR F + R G P ++ D GLS
Sbjct: 9 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 67
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 68 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 127
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 128 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 173
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 64 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 117
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 118 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 177
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 178 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 225
>gi|448340111|ref|ZP_21529093.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445631166|gb|ELY84406.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ H ID EWR F + + R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVVDEHQIDHGPEWRGFDADERE----RTGAPLTATRHDRGLSTEIGRG 89
Query: 80 NGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
A+G LS + + R Q+RG S +R L + + RL L +I+D+A
Sbjct: 90 ADANGNELSGQKRQRLARMRREQSRGRFQSKAERNLAHGLSEVRRIVSRLELSESIRDQA 149
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++++ + + RGR+ +A+ AA +Y ACR +P+T+
Sbjct: 150 CQLFRSAQTEDLLRGRSIEAMAAASVYGACRCNGRPQTL 188
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 58 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 111
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 112 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 171
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 172 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 219
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL T+++ ++ IY++ ++ GR+ + + A LY A RQ PR++ A
Sbjct: 164 MASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIA 221
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 52 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 105
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 106 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 165
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 166 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 213
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 64 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 117
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 118 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 177
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV
Sbjct: 178 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTV 225
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + +DE EWR F + R G P ++ D GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 73 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 178
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D + G+TVC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 44 VCPECGGS--LVSDEARGETVCGDCGLVVEEDAVDHGPEWRAFDSSERDSKS-RVGAPTT 100
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 101 RMMHDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 160
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ GR+ + + A LY A RQ PR++
Sbjct: 161 RMASALGLPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSL 215
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + + C CGL++E ID EWR F N + + RVG PT
Sbjct: 29 CPECESSS-LTRSPDESEISCEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 87 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ A
Sbjct: 147 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVA 204
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D G+ VC +CGLV+E ++D EWR F + S RVG PT ++ D GLST
Sbjct: 36 LVTDEERGERVCDDCGLVVEEDAVDRGPEWRAF-DASEREQKSRVGAPTTNMMHDKGLST 94
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G L S L +W R D R L A I M+ LGL
Sbjct: 95 NIDWRDRDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASSLGLPD 154
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
T+++ A+ IY++ D+ GR+ + + LY A RQ PR++
Sbjct: 155 TVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSL 199
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 160
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + A LY ACR+E PR+++
Sbjct: 161 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLE 199
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC +CGLV+ + S+D EWR F D + RVG PT
Sbjct: 39 CPECGGH--VVTDDEHGETVCDDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 95
Query: 66 LLADGGLSTVI------AKPN--GASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I A N GA L +W R D R L A I
Sbjct: 96 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 155
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++
Sbjct: 156 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSL 209
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+TVCS+CGLV++ ID EWR F ++ D RVG PT ++ D GLST I
Sbjct: 44 DTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQKS-RVGAPTTNMMHDKGLSTNIG 102
Query: 78 -KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
+ A G LSS L W R D R L A I M+ LGL ++
Sbjct: 103 WQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASGLGLPDNVR 162
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A+ IY++ D GR+ + + + LY A RQ PR++ A
Sbjct: 163 ETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEIA 208
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 204
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D G+ C CG V E R+F ++ G+ + R G T+ + D GLST
Sbjct: 23 LITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKE--RTGVGTSLTIHDQGLST 80
Query: 75 VIAKPN-GASGEFLSSSLGR-------WQNRGSNP--DRGLILAFKTIATMSDRLGLVAT 124
VI N A+G+ LSSS+ + W +R N DR AF + + D+L L +
Sbjct: 81 VINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDKLSLSDS 140
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++A IY+K ++K +GR +L+A+ LY ACR+ PRT+K
Sbjct: 141 VVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLK 185
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+A ++ ++G+ K A E+ +K E+ + + G+N +L A LYI+CR+
Sbjct: 222 VARIASKIGISEKTKRLATELLRKAEESELTAGKNPMSLAATALYISCRK 271
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 14/156 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
TD C +C H +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG
Sbjct: 23 TDEACPECSGH--LVVDDERGETVCEDCGLVVETDEIDRGPEWRAF-DASEKDEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 PTTNMMHDKGLSTNIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALG 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRN 146
I M+ LGL +++ A+ IY++ D+ GR+
Sbjct: 140 EIDRMASALGLPENVRETASVIYRRALDENLLPGRS 175
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 47/211 (22%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD--------------- 102
+ D GL+T I K A G LSS L +WQ R D
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXK 141
Query: 103 ---------------------RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
R L A I M+ LG+ ++++ A+ IY++ ++
Sbjct: 142 RSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDL 201
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
RGR+ + + A LY ACRQE PR++ A
Sbjct: 202 IRGRSIEGVSTAALYAACRQEGIPRSLDEVA 232
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 204
>gi|124505847|ref|XP_001351037.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
gi|23510680|emb|CAD49065.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
Length = 367
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N +S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ L + ST K +S + ++ N+ D+ LI AF + + D L +
Sbjct: 110 DIWLENNLTSTTFIK---SSKKLQHLNMMTQINKN---DQTLISAFNILKLICDTFFLRS 163
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +RA EI K+++D + + R + + A +Y+ACR+ +++K
Sbjct: 164 NVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIK 209
>gi|393234326|gb|EJD41890.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 345
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 17/170 (10%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW------RTFANESGDNDPV 57
C DC+ H +V + S+GD VC++CGLVL +D SE RTFA+ GD DP
Sbjct: 26 ICPDCRDPHPRIVEEFSSGDLVCADCGLVLGDRIVDTRSECARRASGRTFADNEGD-DPS 84
Query: 58 RVGGPTNPLLADG-GLSTVIAKPN---GASGEFLSSSLGRWQN-RGSNPDRGLILAFKTI 112
RVG +PLL + LST I + GA+ E + G R S R A + I
Sbjct: 85 RVGAAQDPLLDEAEQLSTSIGFRDDGTGAARELRRALQGTVAGIRASRTQR----ALRDI 140
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
G+ + A ++K+VE+Q+ R + DA++A C+++ACR +
Sbjct: 141 GDKCAAFGMPLAVAASAKLLFKRVEEQRLLRSQAPDAVVATCIFVACRMD 190
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ ++ IY++ GR+ + + + LY A R PR++ A
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMA 203
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C V D ++G+ C CGLV+E+ ID EWR F + G RVG P
Sbjct: 25 EASCPECDGR--VTRDEASGEATCDACGLVVETDEIDRGPEWRDFGGD-GREQKSRVGAP 81
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
L+ D GLST I N A G LS L W R D R L AF
Sbjct: 82 MTELMHDKGLSTNIGWQNEDAYGSPLSDRQRTRMERLRTWDERFRTKDAQERNLKQAFGE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
I M+ L L ++++ A +Y++ ++ GR+ + + A LY A RQ PR V
Sbjct: 142 IDRMASALALPDSVRETAGVLYRRAVEEGLLPGRSIEGMATASLYAATRQHGAPRRV 198
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC ECGLV+ ID EWR+FA++ D +P R G P D GLST I +
Sbjct: 22 ETVCGECGLVVAEDRIDRGPEWRSFADD--DTNPERTGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 83 SGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVE 137
G + L R NR S +R + AF I + RL L ++D A + + +
Sbjct: 80 KGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRSAQ 139
Query: 138 DQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ RGR+ + AA +Y ACR RTV
Sbjct: 140 NEDLVRGRSLEGFAAASVYAACRVAGVSRTV 170
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSRA-LVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A IY++ ++ RGR+ + + AA LY ACRQ + PRT+ A
Sbjct: 159 MASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIA 216
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ C+ECGLVL++ +D EWR +E D + RVG P
Sbjct: 35 ATCPECSGR--IVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPL 91
Query: 64 NPLLADGGLSTVIAKPNG-ASGEFLS----SSLGR---WQNR---GSNPDRGLILAFKTI 112
D GLST I N A G LS S L R W R + +R L AF +
Sbjct: 92 TERRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQERNLKHAFGEL 151
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
M+ L L ++ A +Y++ D++ GR+ +A+ ACLY A RQ PRT
Sbjct: 152 ERMASALDLPEPCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRT 206
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSL 207
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 204
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ C+ECGLVL++ +ID EWRT +++ ++ RVG P +
Sbjct: 30 CPECDGS--VHRDEEHGERTCTECGLVLDADAIDYGPEWRTLDDDA--DERRRVGAPVSK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
L D GLST I + A G +S L W R ++ D R L AF I
Sbjct: 86 LRHDKGLSTTIGWRDEDAYGNRISGRKREQLQRLRTWNERFTSKDAAERNLKQAFGEIER 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ D+ GR+ +A+ A LY A R+ PRT+
Sbjct: 146 MASALGLPEPCRETAGVLYRRAVDEGLLPGRSIEAMSTASLYAAARRHGTPRTL 199
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSL 207
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + D + RVG PT
Sbjct: 24 CPECG--GKLAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 81 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ A
Sbjct: 141 MASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEVA 198
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ ++ IY++ GR+ + + + LY A R PR++ A
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMA 203
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECDGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ + ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R ++ +R L A
Sbjct: 86 PTTKLMHDEGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALG 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
I M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V+
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVED 205
Query: 171 TA 172
A
Sbjct: 206 VA 207
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+T+C +CGLV+E ++D EWR F + N+ RVG PT
Sbjct: 25 CPECS--GKLIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTN 81
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + +C+Y A RQ PR++
Sbjct: 142 MASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSL 195
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 20/179 (11%)
Query: 6 CSDC--KKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C K+ E D+ GD +C CG ++ESH ID SEWR F++++ N+PVR+G P
Sbjct: 4 CINCGSKRFLE---DYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPE 60
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL + ST+I+K S + ++ L + QN+ N ++ L F I+
Sbjct: 61 NPLLGNSS-STLISKGLKGSNK-INEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGSF 118
Query: 122 VATIKDRANEIYKKVED-----------QKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IK++ E++K D + + R ++ +++AA ++I C+ E PR+ K
Sbjct: 119 SKLIKEKVQELFKNYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFK 177
>gi|357289650|gb|AET72963.1| transcription initiation factor IIB [Phaeocystis globosa virus 12T]
gi|357292445|gb|AET73781.1| transcription initiation factor IIB [Phaeocystis globosa virus 14T]
Length = 389
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVC--SECGLVLESHSIDETSEWRTF-ANESGDNDPVRVGG 61
CS CK +F G C ++CG++ + + +D +EWR + A+++ +DP R G
Sbjct: 82 ICSACK---TALFVGDEGFLSCPNTKCGIIYKDN-LDLGAEWRFYGADDNQSSDPTRCGM 137
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRL 119
P NPLL + S + P S E + L R+ S P ++ F+ I +S
Sbjct: 138 PINPLLKESSYSCKVLCPGKLSHE--NWKLKRYTAWQSMPYKEKSQYDEFQLITIISQNA 195
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
G+ I D A +K + + ++ RG N+D ++AA +YI+CR D PRT K A
Sbjct: 196 GISKMIIDEATRYHKIISESQTFRGLNRDGIIAASIYISCRVNDFPRTAKEIA 248
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 21/181 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C C K+T +V D + + CS CG+V+E +D+ R FA+ PV G
Sbjct: 8 CPRCGKNT-LVTDVESSEVFCSNCGIVVE-EKVDDGRPERRFAD-----SPVIKSHTGDK 60
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKT 111
T+ D GLST+I N ++G LS+S L +W +R ++ DR L A
Sbjct: 61 TSLTRHDRGLSTMINPFNKDSTGNPLSTSMKLSMTRLRKWDSRSRVKTSTDRNLQQALLE 120
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
+ M ++L L I ++A+ IY+K ++K RGR+ +L+AA LY ACR+ + PRT++
Sbjct: 121 LLKMKEKLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTLREV 180
Query: 172 A 172
A
Sbjct: 181 A 181
>gi|345005621|ref|YP_004808474.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321247|gb|AEN06101.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G+T C ECGLVL+ SID EWRTF E D + RVG PT
Sbjct: 28 CPECDG--QVIRDDEHGETTCEECGLVLDDVSIDRGPEWRTFDGEEKD-EKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ L W R D R L AF I+
Sbjct: 85 LMHDKGLSTTIGWQNKDAYGQAVSNRKRARLQRLRTWDERFRTKDAHERNLKQAFGEISR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + ++ A +Y++ D+ GR+ + + A LY A RQ PR +
Sbjct: 145 MASALDMPEPARETAGVLYRRAVDEDLLPGRSIEGMATAALYAAARQHGTPRPL 198
>gi|68073879|ref|XP_678854.1| transcription initiation factor [Plasmodium berghei strain ANKA]
gi|56499453|emb|CAH98814.1| transcription initiation factor TFIIB, putative [Plasmodium
berghei]
Length = 366
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVG 60
+ C DCK+ ++ D S G +C+ CGLV+E++ + E EWR F+N +S ND RVG
Sbjct: 46 NNICPDCKEKGIIICDTSEGTQICNGCGLVVETNILSEEQEWRNFSNDGQSKGNDRNRVG 105
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
++ L + ST K +S + ++ N+ D+ L+ AF + + +
Sbjct: 106 ETSDIWLENNLTSTTFIK---SSKKLQHLNMMTQINKN---DQTLLSAFNILKLICETFF 159
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L + + +RA EI K+++D + R + + A +Y+ACR+ +++K
Sbjct: 160 LRSNVIERAKEITKELQDMDQLKNRANNLNMLAVVYLACREAGHIKSIK 208
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 28 CPECGGR--VLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSL 198
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 38 EVMCPECGSRN-LEHDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAP 95
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
+ D GLST+I N S G+ +SS L +WQ R + +R L A
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 TA 172
A
Sbjct: 212 IA 213
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAF-DASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 148 MASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSL 201
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 83/178 (46%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC +CGLV+E ID EWR F + D RVG PT
Sbjct: 26 CPECGGR--LAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ D GR+ + + A +Y A RQ PR++ A
Sbjct: 143 MASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAGVPRSLDEVA 200
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 29 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 85
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 86 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 146 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 203
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
E+V D S + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 33 EIVSDSS--EIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKR-CRVGAPMTYTIHDKGLS 89
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N A G+ +S++ L +WQ R D R L A + ++ +LGL
Sbjct: 90 TVIDWRNKDAYGKDISANKRAELYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLP 149
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+K+ A+ +Y++ + RGR+ + ++AA +Y ACR+ PRT+
Sbjct: 150 KHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTL 195
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 201
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 201
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 201
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ A
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIA 204
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++++D+ G+ C+ CG ++ +D EWR F + S R G P +
Sbjct: 10 CPSCG-SSKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAF-DASQREKRSRTGAPESI 67
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I +G L +WQ+R D R L A + ++ +L
Sbjct: 68 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 127
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 128 LPRHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIA 179
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LIADDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 204
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C +H G+TVC +CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 41 CPECDGRLATDTEH--GETVCEDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 96
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LS R W R D R L A I
Sbjct: 97 NMMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSKERNLKQALGEID 156
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++
Sbjct: 157 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVGNPRSL 211
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++D G+ +C +CG V++ D EWR F +E+ D R G P +
Sbjct: 11 CPNCGSEN-IIYDPKTGEYICKDCGYVIKIE-FDLGPEWRHFDDETVDRR--RGGAPLSY 66
Query: 66 LLADGGLSTVI---AKPNGASGEFLSS--SLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
GLST I ++ GE + +W +R S DR L +A + M D+
Sbjct: 67 AKVGRGLSTEIGDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELKKMVDK 126
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L + +++ A IY+KV ++ +RGRN + LLA LY+ R+ + PRT+
Sbjct: 127 LNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTL 176
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C DC ++V D+ AGD VC CG+VL +D+T EWRTF+N+ D RVG
Sbjct: 8 CVDCGSD-DIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQV 66
Query: 63 TNPLLADGGLSTVIA-----KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+ + D L+TV+ K NG + + L N+ S R + I +S+
Sbjct: 67 EDQGIEDATLTTVLVDSTSEKNNGKAQTAMLPKL----NKESAHVRRMQNMTNRIREISE 122
Query: 118 RLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIACRQEDKPRTVK 169
L L I + A ++Y++ E + + RG ++++ AA ++IACRQ RT+K
Sbjct: 123 TLSLPKIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLK 175
>gi|34394694|dbj|BAC84000.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|222637101|gb|EEE67233.1| hypothetical protein OsJ_24371 [Oryza sativa Japonica Group]
Length = 362
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE--SHSIDETSEWRTFANESGDNDPVRVG- 60
++C C++ T +V DH+ GD +C+ C L +++ E WR A +
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPTNPLLADG-GLSTVIAKP------NGA---SGEFLSSSLGRWQNRGSNP 101
+PLL G G++ + P GA + + + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPPKVRCGVP 128
Query: 102 DRGLILA--FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIA 158
D LA F I M+ RLGL + DRA E+ +K+E+ ++ +GR++DAL AACL+ A
Sbjct: 129 DTSKALAEGFDAIVGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 159 CRQEDKPRTVK 169
CR E PRT+K
Sbjct: 189 CRVEGAPRTLK 199
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 35 CPEC--NGRLVADDEHAETVCADCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + + GR+ + + + LY A RQ PR++
Sbjct: 152 MASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSL 205
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E D G+ C+ECGLV++ ID +EW + E + RVG P P
Sbjct: 54 CPECGGRLE--HDPEHGERACTECGLVVDEDEIDLGAEWTAHSAEE-QQERSRVGSPVTP 110
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSN---PDRGLILAFKTIAT 114
+ D GLST I + A G LS+ R W +R +R L I
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
M+ LGL A+I++ A+ IY++V D+ GR+ +++ AA LY A RQ R++ G
Sbjct: 171 MASALGLPASIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDG 226
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C ++ D +TVC +CGLV+E ID EWR F ++G+ D RVG PT
Sbjct: 31 CPECGGR--LISDTEHAETVCDDCGLVVEEGEIDRGPEWRAF--DAGEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 147 RMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSL 201
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I + A G LS S L W R ++ +R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALA 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V+
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMGLPRSVE 204
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G+ + + G V+ +++ + EWR F +E GD D R G P + D GLST
Sbjct: 2 VVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSE-GDADRARTGAPVSLAFHDMGLST 60
Query: 75 VIAKPN-GASGEFLSSS----LGR---WQ---NRGSNPDRGLILAFKTIATMSDRLGLVA 123
VI K + ASG + S+ +GR W + S +R L AF ++ + DRLGL
Sbjct: 61 VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD 120
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ ++A +Y+K +++ RG + ++LAA +Y A RQ RT+
Sbjct: 121 YVIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLRTL 165
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDSDQQMKRS-RVGAPMTYAIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 115 WRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALSELDRMASALGLPRTVR 174
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 175 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 216
>gi|448336699|ref|ZP_21525792.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445628249|gb|ELY81558.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 324
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECTG--SIRHDAEHGERTCAECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I N A G +S W R S+ +R L AF I
Sbjct: 83 SSVKHDRGLSTTIGWRNEDAYGNRVSERKRDRLRRLRTWNERFSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ D++ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPEPCRETAGVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTL 198
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 115 WRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVR 174
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 175 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 216
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 204
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLE 207
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLE 207
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+T C+ECGLV++ ID EWR F + D R G PT
Sbjct: 32 VCPECGGR--LVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTT 88
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIA 113
L+ D GLS+ I N A G LS S L W R ++ +R L A I
Sbjct: 89 KLMHDKGLSSQIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIE 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V+
Sbjct: 149 RMGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVE 204
>gi|448340358|ref|ZP_21529331.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445630664|gb|ELY83925.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 324
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECSG--SIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I + A G +S W R S+ +R L AF I
Sbjct: 83 SSIKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTL 198
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 166
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + + LY ACR+E PR+++
Sbjct: 167 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLE 205
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ VC++CGLV + ID EWR+F E+ D RVG P
Sbjct: 46 CPECAGR--IRPDSDRGERVCADCGLVSDGDEIDYGPEWRSFEGETSDRS--RVGAPITE 101
Query: 66 LLADGGLSTVI------AKPNGASGEFLS--SSLGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I A N SGE + + L W R ++ D R L A +
Sbjct: 102 RRHDKGLSTTIGWENRDAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELER 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
M+ LGL ++ A IY++ +++ GR+ +A+ A LY A RQ+ PRT
Sbjct: 162 MASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQGTPRT 214
>gi|383625085|ref|ZP_09949491.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448697538|ref|ZP_21698578.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445781491|gb|EMA32347.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 327
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D S G+ VC ECGLV+++ ID EWR+F +E GD RVG P
Sbjct: 29 CPECSGR--LRHDVSHGEHVCVECGLVVDADEIDHGPEWRSFDDE-GDAR-TRVGAPITE 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I + A G LS+S L W R ++ D R L AF +
Sbjct: 85 RRHDKGLSTTIGWEDRDAYGNDLSASKRTRLRRLRTWNERFTSKDARERNLKHAFGELER 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
M+ LGL ++ A IY++ ++ GR+ +A+ A LY A RQ PRT
Sbjct: 145 MASALGLPDPCRETAAVIYRRAVEEDLLPGRSIEAMATASLYAAARQHGTPRT 197
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
S +T C+ CGLV+ + +ID EWR+FA+ D R G P D GLST I +
Sbjct: 17 SGDETFCTSCGLVVAADNIDRGPEWRSFAD---GPDRKRTGAPLTRSRHDRGLSTEIGRS 73
Query: 80 NGASGE--FLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
+G L + L R NR S +R + AF I + LGL T++DRA +++
Sbjct: 74 IRLTGRKRRLFARLRRQHNRARIASKAERNRVYAFTEIRRLVGALGLPETVRDRACVLFE 133
Query: 135 KVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ RGR+ + AA +Y CR E RT+
Sbjct: 134 SAQNEDLLRGRSLEGFAAAAVYAVCRTEGLSRTI 167
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +T + D G VC+ CG VL H +D EWR F E + D R GGP
Sbjct: 45 CPICG-NTVFIEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLER 102
Query: 66 LLAD---GGLSTVIAKPNGASG-EFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDR 118
+ ++ + T + P+ E L +WQ R ++ +R L+ A + ++ +
Sbjct: 103 VTSEELVTRIETTLKSPDLKKKLEILKYK--KWQQRIRVQTSYERNLVQATHELNRIAHQ 160
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
LG+ + D A +YK+V +GR+ +A++AACL++ACR + PR++
Sbjct: 161 LGVPKSCMDEALAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSL 210
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LISDTEHAETVCQDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSL 200
>gi|397772740|ref|YP_006540286.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397681833|gb|AFO56210.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 324
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECTG--SIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I + A G +S W R S+ +R L AF I
Sbjct: 83 SSIKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTL 198
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ C+ CGLV++ ID EWR + D RVG PT
Sbjct: 26 CPECGG--QLNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHTQKERDQKS-RVGAPTTN 82
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRW--QNRGSNP-DRGLILAFKTIAT 114
L+ D GLST I+ N A G LS L W ++R NP +R L AF I
Sbjct: 83 LMHDKGLSTTISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAFAEIER 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL ++++ A IY++ + GR+ + + A ++IA RQ + PR++ A
Sbjct: 143 MASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLDTLA 200
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 173
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ ++ RGR+ + + + LY ACR+E PR+++
Sbjct: 174 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLE 212
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+TVC++CGLV+ S+D EWR F + D RVG PT
Sbjct: 25 CPECS--GQLISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKDQKS-RVGAPTTN 81
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A +Y A RQ PR++
Sbjct: 142 MASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSL 195
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQ
Sbjct: 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 61
Query: 162 EDKPRTVK 169
E PRT K
Sbjct: 62 EGVPRTFK 69
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 26/188 (13%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 110 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 169
Query: 59 VGGPTNPLLADGGLST--VIAKPNGASG--------------EFLSSSLGRWQNRGSNPD 102
VG + L DGG+ T ++A G E +S LG G D
Sbjct: 170 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGTGVGSG---D 226
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKV-EDQKSSRGRNQDALLAACLYIACRQ 161
R L +AF I + + L + +RA EI K + +D R R+ + A +Y+ACR+
Sbjct: 227 RQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQLRTRSNATTMLAIIYLACRE 286
Query: 162 EDKPRTVK 169
RTVK
Sbjct: 287 AGVTRTVK 294
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ TE++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 64 HCPECES-TELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTT 121
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 122 KLMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 181
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL ++++ A+ IY++ D+ GR+ + + A L+ A R PR++ A
Sbjct: 182 RMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQVPRSIDEVA 240
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++C LV+E ID EWR F + + ++ RVG PT
Sbjct: 46 HCPECGGR--LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 102
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 103 NMMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEID 162
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ ++ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 163 RMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 217
>gi|428169704|gb|EKX38635.1| hypothetical protein GUITHDRAFT_115183 [Guillardia theta CCMP2712]
Length = 449
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA---- 77
G VCS C + + + SEWRTF ++ + R GGP N LL + G T I
Sbjct: 146 GSIVCSNCAMENNARIMSTQSEWRTFQDDDKSQEKGRTGGPENALLNNDGAQTKIEGNDF 205
Query: 78 ---KPNGASGEFLSSSLGRWQNR-GSNP-DRGLILAFKTIATMSDRLGLVATIKDRANEI 132
KP +++L + Q+R GS DR L A+K I + D + L + I+ +A
Sbjct: 206 LTRKPVTVDVLGSAANLAKSQHRFGSQSGDRALTDAYKKIDEICDTMNLSSVIRGQAKHN 265
Query: 133 YKKV--EDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K E +K + D +L +C+YIACR+E PRT+K
Sbjct: 266 FKSYDEESKKQKKKIPIDPVLTSCIYIACREEGFPRTMK 304
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 89/206 (43%), Gaps = 42/206 (20%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF----ANESG------ 52
D C +C + +V D G+TVC +CGLV+E S+D EWR F NE
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKSRVGAPT 85
Query: 53 -------------------DNDPVRVGGPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-- 90
N+ RVG PT + D GLST I N A G L S
Sbjct: 86 TNTMHDXRGPEWRAFDAAEKNEKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQR 145
Query: 91 -----LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS 142
L +W R D R L A I M+ LGL +++ A+ IY++ D+
Sbjct: 146 EKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLL 205
Query: 143 RGRNQDALLAACLYIACRQEDKPRTV 168
GR+ + + AC+Y A RQ PR++
Sbjct: 206 PGRSIEGVSTACVYAAARQAGVPRSL 231
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LEQDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|399578576|ref|ZP_10772323.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399236462|gb|EJN57399.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F E D++ R G P
Sbjct: 24 CPECSGHVAT----NAVETVCEDCGLVIADQEIDHGPEWRSF--EDDDSNRERTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
D GLST I + A G LS S L R Q RG S +R L + +
Sbjct: 78 ARHDRGLSTEIGRRTDAKGRTLSGSKRRQLARLRREQTRGRFQSKAERNLAHGLGEVRRI 137
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
+ L L +I+D+A ++++ + + GR+ +A+ AA +Y CR +P
Sbjct: 138 ASTLELSGSIRDQACQLFQSAQREDLLLGRSIEAVAAASVYGVCRCHGRP 187
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 35 CPECGGR--LVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 152 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSL 205
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS+C + D S G+ +C CG V++ ID+++E+R F E + R G P
Sbjct: 63 CSECGGQ-QFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEKEK-KARAGQPLTY 120
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS---------LGRWQNR-GSNPDRGLILAFKTIATM 115
D G+ST I K SGE S L +W R + DR L A + +M
Sbjct: 121 TKHDMGVSTEIGK---GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSM 177
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L L ++ + +Y+K DQ RGR+ +++++A +YI R++ PRT+
Sbjct: 178 ISNLNLPESVHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTL 230
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +C ++V D+ + VC +CGLV+++ ID EWR F ++ RVG
Sbjct: 37 TESQCPECGSR-QLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 TA 172
A
Sbjct: 215 IA 216
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 65 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 121
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 122 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 181
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY + RQ PR++
Sbjct: 182 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQAGTPRSL 235
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +A +T+C +CGLV++ ID EWR F +++ R G P
Sbjct: 41 CPECEGRVTT----NAVETICEDCGLVIDEQRIDHGPEWRAF----DEDERERTGAPLTA 92
Query: 66 LLADGGLSTVIAKPNGASGEFLS-------------SSLGRWQNRGSNPDRGLILAFKTI 112
D GLST I + A+G LS + GR+Q S +R L +
Sbjct: 93 ARHDRGLSTEIGRGTDANGNELSGQKRRRLTRMRREQTRGRFQ---SKAERNLAHGLSEV 149
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+S L L TI+D+A ++++ +++ +GR+ +A+ AA +Y ACR +PRT+
Sbjct: 150 RRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 205
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 92 GRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDA 149
++QNR S DR ++ AFK M+DR+ L I DR N ++K+V +QKS +GR DA
Sbjct: 17 SKYQNRRTMSISDRAMMNAFKETTPMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDA 76
Query: 150 LLAACLYIACRQEDKPRTVK 169
+ +ACLYIACRQE PRT K
Sbjct: 77 IASACLYIACRQEGVPRTFK 96
>gi|448346521|ref|ZP_21535406.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445632724|gb|ELY85935.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 324
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P +
Sbjct: 30 CPECTGS--IRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTIAT 114
+ D GLST I + A G +S W R S+ +R L AF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERFSSKNAQERNLKQAFGEIER 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+
Sbjct: 145 MASALGLPEPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTL 198
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + +TVC++CGLV+E +ID EWR F + D RVG PT ++ D GLST I
Sbjct: 33 DEAQAETVCNDCGLVVEEDAIDRGPEWRAFDSSEKDKKS-RVGAPTTKMMHDDGLSTNIG 91
Query: 78 KPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
N A G LS+S L W R D R L A I M+ LGL ++
Sbjct: 92 WQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLPENVR 151
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A+ IY++ + GR+ + + A L+ A R + PR++ A
Sbjct: 152 ETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGNVPRSLDEMA 197
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +A +T+C +CGLV++ ID EWR F +++ R G P
Sbjct: 24 CPECEGRVTT----NAVETICEDCGLVIDEQRIDHGPEWRAF----DEDERERTGAPLTA 75
Query: 66 LLADGGLSTVIAKPNGASGEFLS-------------SSLGRWQNRGSNPDRGLILAFKTI 112
D GLST I + A+G LS + GR+Q S +R L +
Sbjct: 76 ARHDRGLSTEIGRGTDANGNELSGQKRRRLTRMRREQTRGRFQ---SKAERNLAHGLSEV 132
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+S L L TI+D+A ++++ +++ +GR+ +A+ AA +Y ACR +PRT+
Sbjct: 133 RRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 188
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ G+ C +CG+V+E ID+ EWR F +E D R G P +
Sbjct: 9 CPECGS-IHLVKDYDRGELTCYDCGIVIEDSLIDQGPEWRAFDSEQ-DGKRSRTGSPMSF 66
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 67 LSHDKGLATEISWSNKDYYGKRIPHKNRSQIYRVRKWHQRIRVSNAAERNLALALQVLNE 126
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+LG+ IK+ A IY+K ++ RGR+ ++++ A +Y +CR + PRT+
Sbjct: 127 DGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTL 180
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V+D G+ C CG +++ + ID ++R F + R+G P +
Sbjct: 11 CPNCG-STNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRS-RIGAPESI 68
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I +G L RWQ+R D R L A + ++ +L
Sbjct: 69 LLHDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLK 128
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 129 LPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTL 176
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ +A E
Sbjct: 182 ISRVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVE 235
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 236 ILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 276
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSL 201
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC++CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 52 DYERAELVCADCGLVVDADFVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMID 110
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 111 WRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVR 170
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 171 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGRLRSDSEHA--ETVCQDCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSL 201
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ VC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 29 CPECDGR--LLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKS-RVGAPTTK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS + W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++
Sbjct: 146 MASALGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSL 199
>gi|269865142|ref|XP_002651819.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220063817|gb|EED42238.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 138
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIY 133
TI D+A I+
Sbjct: 129 TIIDKAQAIF 138
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
GD + E GLV+E +ID EWR F ++S + RVG PT P + D GL+T I +
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAF-DQSERDQKSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A+G LS+ L WQ R D R L A I M LG +++ A+
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALGAPDNVQEMAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
IY++ D+ RGR+ + + L+ A R E PRT++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLE 203
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +T+C +CGLV++ ID EWR F +++ R G P D GLST I +
Sbjct: 34 NAVETICEDCGLVIDEQRIDHGPEWRAF----DEDERERTGAPLTAARHDRGLSTEIGRG 89
Query: 80 NGASGEFLS-------------SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
A+G LS + GR+Q S +R L + +S L L TI+
Sbjct: 90 TDANGNELSGQKRRRLFRMRREQTRGRFQ---SKAERNLAHGLSEVRRVSSVLELSETIR 146
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
D+A ++++ +++ +GR+ +A+ AA +Y ACR +PRT+
Sbjct: 147 DQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTL 188
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQTLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++
Sbjct: 150 DRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSL 205
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 99 SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158
S+ DR L+ AF+ I M+DR+ L TI DRAN ++K+V D K+ +GR DA+ +ACLYIA
Sbjct: 100 SSSDRTLLNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIA 159
Query: 159 CRQEDKPRTVK 169
CRQE PRT K
Sbjct: 160 CRQEGVPRTFK 170
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++
Sbjct: 150 DRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSL 205
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 30 CPECGGRLRSDSEHA--ETVCQDCGLVVDEGEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ A
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIA 204
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G++ C ECGLV++ +D EW+ + N ++ RVG PT
Sbjct: 26 CPECDG--KIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQ 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I K G+ + L W R D R L A I
Sbjct: 83 LMHDKGLSTTIGWKNTDGYGKTIPDRKRARLQRLRTWDERFRTKDAHERNLKQALTEIRR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++ A +Y++ GR+ + + ACLY A RQ PRT+
Sbjct: 143 MASALGLPEPPRETAGILYRRAVKDNLLPGRSIEGMATACLYAATRQHGSPRTL 196
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
S +T+C +CGLVL +ID EWR+F ++ + DP R G P D GLST I
Sbjct: 17 SGTETICEDCGLVLAEDAIDRGPEWRSFDDD--ETDPRRTGAPLTRSRHDRGLSTEIGYG 74
Query: 80 NGASGEFLS----------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIK 126
+G E+ S + L R NR S +R + F I ++ L L + +
Sbjct: 75 SGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRINTGLSLPDSAR 134
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++A ++K + + +GR+ + AA +Y CR PRT+
Sbjct: 135 EQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTI 176
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
CS CK + VV DH G+ +C CG VLE+ I E EWR F ES + RV G
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRV-GE 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
N + DG ST G S + + QN +N DR L +F + T++D L
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + +RA EI K++ R R A LY+ACR+ R+++
Sbjct: 126 NIRDQVVERAKEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLR 175
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TENVCPECGSR-QLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAFDHDQRVKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A IY+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 154 ELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 171 TA 172
A
Sbjct: 214 IA 215
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++ D G+TVC CGLV++ ++D EWR F ++ D RVG PT
Sbjct: 43 CPECGS-TDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQKS-RVGAPTTN 100
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 101 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMKRLRTWNERFRTRDSKERNLKQALGEIDR 160
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ ++ IY++ + GR+ + + A L+ A R PR++ A
Sbjct: 161 MASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVA 218
>gi|449681721|ref|XP_004209907.1| PREDICTED: transcription initiation factor IIB-like [Hydra
magnipapillata]
Length = 209
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VC ECGLV+ ID SEWRTF+NE+ D RVGG NP L LST++ +
Sbjct: 2 VCPECGLVVGDRVIDVGSEWRTFSNEANGVDRCRVGGGENPFLDGTDLSTMVGSDRASGS 61
Query: 85 EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATI 125
R+QNR S DR L+ AF+ I TM+ R+ L TI
Sbjct: 62 GLDLQGYARYQNRSGISGSDRSLLNAFREIQTMASRINLPKTI 104
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C +V D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 51 SERVCPECGGR--LVEDETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 107
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 108 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 167
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+
Sbjct: 168 EIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVE 226
>gi|448825295|ref|YP_007418226.1| putative transcription initiation factor iib-like protein
[Megavirus lba]
gi|425701220|gb|AFX92382.1| putative transcription initiation factor iib-like protein
[Megavirus courdo11]
gi|444236480|gb|AGD92250.1| putative transcription initiation factor iib-like protein
[Megavirus lba]
Length = 438
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPT 63
C C ++ D + VCSECG++ +D EWR + N+ G D V R G P+
Sbjct: 122 ICCGCGSKNTLIEDIQSNVIVCSECGII-NDELMDRGPEWRQYNNDDGRGDGVNRCGCPS 180
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
NP T+I GAS +W N +R L F+ I+ + + G+
Sbjct: 181 NPFFPKSSQGTIIV---GASSRLRQKQ--KW-NSTVYKERSLNGVFEYISNVCSKNGIPK 234
Query: 124 TIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I D A +YK++ D K RG N+ +++AAC++ AC PR+VK A
Sbjct: 235 IIIDSARILYKRLSDCKHKTGDNQGKQIIIRGNNRSSIIAACVFKACEMNKNPRSVKEIA 294
>gi|371943626|gb|AEX61454.1| putative transcriptioninitiation factor IIb-like protein [Megavirus
courdo7]
Length = 438
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPT 63
C C ++ D + VCSECG++ +D EWR + N+ G D V R G P+
Sbjct: 122 ICCGCGSKNTLIEDIQSNVIVCSECGII-NDELMDRGPEWRQYNNDDGRGDGVNRCGCPS 180
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
NP T+I GAS +W N +R L F+ I+ + + G+
Sbjct: 181 NPFFPKSSQGTIIV---GASSRLRQKQ--KW-NSTVYKERSLNGVFEYISNVCSKNGIPK 234
Query: 124 TIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I D A +YK++ D K RG N+ +++AAC++ AC PR+VK A
Sbjct: 235 IIIDSARILYKRLSDCKHKTGDNQGKQIIIRGNNRSSIIAACVFKACEMNKNPRSVKEIA 294
>gi|363540134|ref|YP_004894395.1| mg344 gene product [Megavirus chiliensis]
gi|323651368|gb|ADX97530.1| transcription factor IIB [Courdo11 virus]
gi|350611299|gb|AEQ32743.1| putative transcription initiation factor iib-like protein
[Megavirus chiliensis]
Length = 457
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPT 63
C C ++ D + VCSECG++ +D EWR + N+ G D V R G P+
Sbjct: 141 ICCGCGSKNTLIEDIQSNVIVCSECGII-NDELMDRGPEWRQYNNDDGRGDGVNRCGCPS 199
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
NP T+I GAS +W N +R L F+ I+ + + G+
Sbjct: 200 NPFFPKSSQGTIIV---GASSRLRQKQ--KW-NSTVYKERSLNGVFEYISNVCSKNGIPK 253
Query: 124 TIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I D A +YK++ D K RG N+ +++AAC++ AC PR+VK A
Sbjct: 254 IIIDSARILYKRLSDCKHKTGDNQGKQIIIRGNNRSSIIAACVFKACEMNKNPRSVKEIA 313
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL-L 67
CK + + D G+ VC CGL+L + D + E + +E D + GP + L +
Sbjct: 18 CKTYPAIT-DSERGEIVCGGCGLILLQNMADASYENNGYTSE--DFMKMSRTGPASSLTM 74
Query: 68 ADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRL 119
D GLSTVI ++G+ LSS L W R S L AF + M +L
Sbjct: 75 NDRGLSTVIGTNKDSTGKALSSKTKYEFNRLRTWDQRSKSRKTASLSKAFTLLHGMKTKL 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
G+ + + A IY+KV K +RGR +L++A LY ACR+ + PRT+
Sbjct: 135 GISDNVVENAAYIYRKVVSAKLTRGRTMASLISASLYAACRENNIPRTL 183
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 45 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 101
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 102 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 162 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 215
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 40 TATVCPECGSK-QLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAFDHDQRMKRS-RVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 98 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 157
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ + PRT+
Sbjct: 158 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 217
Query: 171 TA 172
A
Sbjct: 218 IA 219
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 58 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 114
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 115 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 174
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 175 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 228
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECSGR--LVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 164 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 217
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG+ LS+S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L + ++ ++A IY+K ++ RGR+ AL+AA LY ACR PR +K
Sbjct: 123 ELNRLKDKLAISDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLK 181
>gi|227827554|ref|YP_002829334.1| Zinc finger TFIIB-type domain-containing protein [Sulfolobus
islandicus M.14.25]
gi|227830241|ref|YP_002832021.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
L.S.2.15]
gi|229579056|ref|YP_002837454.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582193|ref|YP_002840592.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584757|ref|YP_002843259.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.27]
gi|238619711|ref|YP_002914537.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.4]
gi|284997664|ref|YP_003419431.1| Zinc finger, TFIIB-type domain protein [Sulfolobus islandicus
L.D.8.5]
gi|227456689|gb|ACP35376.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
L.S.2.15]
gi|227459350|gb|ACP38036.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.14.25]
gi|228009770|gb|ACP45532.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|228012909|gb|ACP48670.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|228019807|gb|ACP55214.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.27]
gi|238380781|gb|ACR41869.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.4]
gi|284445559|gb|ADB87061.1| Zinc finger, TFIIB-type domain protein [Sulfolobus islandicus
L.D.8.5]
Length = 293
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + +D G VC+ CG V+E +++D +WR + N N+ RVG P+ P
Sbjct: 3 CPFCGTEDTITYDMEKGMYVCTNCGSVIEDNAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRLGLVA 123
+ D G T+I A + + R QN R S D+ L+ + S +L L
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPE 120
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K+ A+ I +K+ + ++ +Q L+ A LY +C+ + PR ++
Sbjct: 121 HVKETASLIIRKMVETGQTKRIDQYTLIVAALYYSCQVNNVPRHLQ 166
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 164 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 217
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 163 DKPRTVK 169
PRT K
Sbjct: 62 GVPRTFK 68
>gi|385773223|ref|YP_005645789.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
HVE10/4]
gi|385775857|ref|YP_005648425.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
REY15A]
gi|323474605|gb|ADX85211.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
REY15A]
gi|323477337|gb|ADX82575.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
HVE10/4]
Length = 293
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + +D G VC+ CG V+E +++D +WR + N N+ RVG P+ P
Sbjct: 3 CPFCGTEDTITYDMEKGMYVCTNCGSVIEDNAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRLGLVA 123
+ D G T+I A + + R QN R S D+ L+ + S +L L
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPE 120
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K+ A+ I +K+ + ++ +Q L+ A LY +C+ + PR ++
Sbjct: 121 HVKETASLIIRKMVETGQTKRIDQYTLIVAALYYSCQVNNVPRHLQ 166
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 4 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 63
Query: 163 DKPRTVK 169
PRT K
Sbjct: 64 GVPRTFK 70
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL-L 67
CK + + D G+ VC CGL+L + D + E ++ E D + GP + L +
Sbjct: 18 CKTYPAIT-DSERGEIVCGGCGLILLQNMADASYENNGYSQE--DFMKLSRTGPASSLTM 74
Query: 68 ADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRL 119
D GLSTVI +SG LS+ L W R S L AF + M +L
Sbjct: 75 YDKGLSTVIGTNKDSSGNALSNKTKYEFNRLRTWDQRSKSRKTAALSKAFTLLHGMKTKL 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
G+ + + A IY+KV K +RGR +L++A LY ACR+ + PRT+ A
Sbjct: 135 GVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIA 187
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
H V D +AG+ +CS+CG+VLE ++D ++ +TF E N R G PT ++D
Sbjct: 29 HKSPVTDVNAGEIICSDCGIVLEERAVDRNNDSKTFTKEDYLN-TARNGPPTKISISDMS 87
Query: 72 LSTVIAKPN-GASGEFLSSSLGR-------WQNRG--SNPDRGLILAFKTIATMSDRLGL 121
S++I+K N A G+ + S+ R W +R +N ++ L+ AF + S++L +
Sbjct: 88 SSSIISKKNFDAVGKKMHSNNIRHFSRMRFWDSRSKSNNKEQNLVKAFTVLDAYSNKLNM 147
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K+ A IY+K D+K RG + +++AA +Y +C+Q PR+V
Sbjct: 148 PENAKEHAAYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSV 194
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 TA 172
A
Sbjct: 215 VA 216
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 38 TETVCPECGSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 95
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 96 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 155
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 156 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 215
Query: 171 TA 172
A
Sbjct: 216 IA 217
>gi|156094983|ref|XP_001613527.1| transcription initiation factor TFIIB [Plasmodium vivax Sal-1]
gi|148802401|gb|EDL43800.1| transcription initiation factor TFIIB, putative [Plasmodium vivax]
Length = 366
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ V+ D+S G +C+ CGLVLES + E EWR F + + ND RVG +
Sbjct: 48 CPDCKEKGIVICDNSEGTQICNGCGLVLESRILSEEQEWRNFHSDGQMKSNDRNRVGEVS 107
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ + ST K +S + ++ N+ D+ L+ AF + + + L +
Sbjct: 108 DIWFENNLTSTTFIK---SSKKLQHLNMMTQINKS---DQTLLAAFNILKLICETFFLRS 161
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +RA EI K++++ + + R + + A +Y+ACR+ +++K
Sbjct: 162 NVIERAKEITKELQEMEQLKNRINNLNMLAVVYLACREAGHIKSIK 207
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 113 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 172
Query: 59 VGGPTNPLLADGGLST--VIAKPNGASGEFLSSSLGRWQN-----------RGSNPDRGL 105
VG + L DGG+ T ++A G + S R Q + DR L
Sbjct: 173 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQL 232
Query: 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKV-EDQKSSRGRNQDALLAACLYIACRQEDK 164
+AF I + + L + +RA EI K + +D R R+ + A Y+ACR+
Sbjct: 233 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGV 292
Query: 165 PRTVK 169
RTVK
Sbjct: 293 TRTVK 297
>gi|393795828|ref|ZP_10379192.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 306
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 10/172 (5%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
CK + ++ D G+ C CGLVL + D + E ++ E R G T+ +
Sbjct: 18 CKTY-PIITDSERGEMFCGGCGLVLVQNMSDISHESNGYSQEDF-MKLTRTGPATSLTMH 75
Query: 69 DGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRLG 120
D GLSTVI +SG LSS L W R S L AF + M +LG
Sbjct: 76 DKGLSTVIGINKDSSGNALSSKTKYEFNRLRTWDQRSKSRSTVALSKAFTLLNAMKTKLG 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ + + A IY+K + K +RGR +L++A LY ACR+ + PRT+ A
Sbjct: 136 IPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIA 187
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC +CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECGSK-DVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFK----TIATMSDR 118
+ L LST + P G + + + + D + + I ++D
Sbjct: 69 ADARLDSLSLSTYLVDPKKGGGGADGEAGRKHKRPNISSDSAKVKRMQRNMARIQEVADY 128
Query: 119 LGLVATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L L I + A ++Y + E Q + RG ++++ A L+IACR+ R++K
Sbjct: 129 LSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLK 180
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS CK VV DH G+ +CS CG+V++ +WR F+ + R G PT+
Sbjct: 7 CSACKNEV-VVTDHECGEVICSRCGIVIDRVESPAVQDWRAFSVDEFYRKS-RTGAPTSL 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
+ GL T I F + ++ + +N DR L A + + + LGL I
Sbjct: 65 ARYNKGLLTSIGNSKANGLNFNRIRVWDFRIQAAN-DRSLKQALPELEHLKESLGLPDAI 123
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+++ Y+K +GR ++LAA +Y+ACR+ + PRT+ A
Sbjct: 124 VEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIA 170
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 55 CPECDGR--LMSDTEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 111
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 112 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 171
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 172 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 225
>gi|84995592|ref|XP_952518.1| transcription initiation factor tfiib [Theileria annulata strain
Ankara]
gi|65302679|emb|CAI74786.1| transcription initiation factor tfiib, putative [Theileria
annulata]
Length = 341
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE+ I E EWR F ES + RV G
Sbjct: 15 CTTCKDSSTVVVDHVEGNQLCLNCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRV-GE 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
N + DG ST G S + + QN +N DR L +F + T++D L
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + +R+ EI K++ R R+ A LY+ACR+ R+++
Sbjct: 126 NMRDQVVERSKEILKELNQMGHLRSRSNSLNTLAVLYLACRESSVSRSLR 175
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC++CGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTIA 113
++ D GLST I + A G+ LSS R++ R S DR L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-DRNLKQALGEID 154
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ+ PR++
Sbjct: 155 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDGNPRSL 209
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 TA 172
A
Sbjct: 215 IA 216
>gi|448564338|ref|ZP_21636019.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445716889|gb|ELZ68619.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 312
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C ECGL+++ + ID EWR E + R G P P D GLS+ I A
Sbjct: 36 ETLCEECGLIIDEYQIDHGPEWRI--TERDEESRRRTGAPLTPTRHDRGLSSEIGYKRDA 93
Query: 83 SGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
SG LS + + R Q+RG S +R L L + ++ LG +I+D+A +
Sbjct: 94 SGRTLSGKKRQQVARMRREQSRGRFQSKAERNLALGLGEVRRIAGALGFSDSIRDQACRL 153
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++ +++ RGR+ +++ AA +Y CR RT++ A
Sbjct: 154 FRSAQNEDLLRGRSVESIAAASIYGICRCNGLLRTLEEVA 193
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ A
Sbjct: 159 MASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIA 216
>gi|395324790|gb|EJF57224.1| hypothetical protein DICSQDRAFT_92561 [Dichomitus squalens LYAD-421
SS1]
Length = 359
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD---NDPVRVG 60
C DC+++ +V + GD VC CGLVL ID SEWR F + D + RVG
Sbjct: 30 ICRDCQEYPPNIVEEFRDGDLVCGSCGLVLSDRIIDTRSEWREFTSTHSDETTHAHCRVG 89
Query: 61 GPTNPL-LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMS 116
+ L + L+T I+ +G+S +S L R + N +R + AF+ I M
Sbjct: 90 QVQDRLGVGLEHLATTISVDSGSS---ISQDLRRVARQAENLSPSERRVRQAFRDIDDMC 146
Query: 117 DRLGLVATIKDRANEIYKKV--EDQKSSRGRNQ---DALLAACLYIACRQEDKPRT 167
R+ L T+ D ++Y ++ E+ + SR R++ +A L AC +IACRQ PRT
Sbjct: 147 ARIQLPNTVLDITKQLYWRIDQENIRPSRLRSRAQYEATLGACFFIACRQARVPRT 202
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 40 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 97
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 98 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 157
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ A
Sbjct: 158 MASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIA 215
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 70 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 126
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 127 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 186
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++
Sbjct: 187 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSL 240
>gi|448425111|ref|ZP_21582740.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
gi|445681371|gb|ELZ33805.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
Length = 279
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+ VC++CGLV+E+ ++D EWR+F +E P R G P D GLST I A
Sbjct: 7 ERVCTDCGLVVETDTLDRGPEWRSFDDE---ETPARTGAPLTVARHDRGLSTEIGHKTDA 63
Query: 83 SGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+G LS L R Q RG S DR L + ++ LGL +++++A ++
Sbjct: 64 TGTELSGRKRAQLFRLRREQARGRFQSKADRNLAHGLSEVRRIASGLGLAESLRNQACQL 123
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACR 160
++ + + RGR+ +++ AA ++ ACR
Sbjct: 124 FRSAQAENLLRGRSIESMAAASVFGACR 151
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 78 VCPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTT 134
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIA 113
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 135 ALMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEID 194
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
MS LG+ T ++ A+ IY++ D GR+ + + A LY A R + R++
Sbjct: 195 RMSSALGIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSI 249
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 TA 172
A
Sbjct: 212 IA 213
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ A
Sbjct: 159 MASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIA 216
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 154 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 171 TA 172
A
Sbjct: 214 IA 215
>gi|298707695|emb|CBJ26012.1| transcription initiation factor IIB [Ectocarpus siliculosus]
Length = 317
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVRVGGP 62
FC +C +++ D AG+ +C C +V+ ID+ +EW+T+A +S G DP R G
Sbjct: 10 FCKECMAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCGDA 69
Query: 63 TNPLL-ADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLIL-AFKTIATMSD 117
+PLL A G++T+I G L++ L + Q + S +R L + F + +
Sbjct: 70 ASPLLSAKSGMNTLI---EGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGN 126
Query: 118 RLGLVATIKDRANEIYKKVEDQ---KSSRGRNQDALLAACLYIACRQEDKPRTVK 169
RLGL +++ A + +K ED K + A+ A + CRQ + +T+K
Sbjct: 127 RLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMK 181
>gi|371945167|gb|AEX62987.1| putative transcriptioninitiation factor IIb-like protein
[Moumouvirus Monve]
Length = 397
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGG 61
+ C C ++ D + VCSECG V+ ID EWR + N+ G + + R G
Sbjct: 78 NKICCGCGSKGTLIEDIQSSVIVCSECG-VINDELIDRGPEWRQYNNDDGRGEGINRCGC 136
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRL 119
P+NP T+I N +S L R Q N +R L F+ I T+ +
Sbjct: 137 PSNPFFPKSSQGTIIVGAN-------NSRLKRKQKWNSTVYKERSLNNVFEYITTICNNN 189
Query: 120 GLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTV 168
+ I D A +YK++ D K RG N+ +++AAC++ AC PR+V
Sbjct: 190 NIPKIITDSAKILYKRLSDCKHKTGTNKGKQIIIRGNNRSSIIAACVFKACEMNKHPRSV 249
Query: 169 KGTA 172
K A
Sbjct: 250 KEIA 253
>gi|311977626|ref|YP_003986746.1| putative transcription initiation factor IIb-like protein
[Acanthamoeba polyphaga mimivirus]
gi|81999974|sp|Q5UPT1.1|TF2B_MIMIV RecName: Full=Putative transcription initiation factor IIB-like
protein
gi|55416872|gb|AAV50522.1| putative transcription initiation factor IIB [Acanthamoeba
polyphaga mimivirus]
gi|308204284|gb|ADO18085.1| putative transcription initiation factor IIb-like protein
[Acanthamoeba polyphaga mimivirus]
gi|339061183|gb|AEJ34487.1| putative transcription initiation factor IIB [Acanthamoeba
polyphaga mimivirus]
gi|351737397|gb|AEQ60432.1| putative transcription initiation factor IIB [Acanthamoeba
castellanii mamavirus]
gi|398257098|gb|EJN40706.1| putative transcription initiation factor IIB [Acanthamoeba
polyphaga lentillevirus]
Length = 461
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPT 63
CS C ++ D S+ VCSECG++ +D EWR + N+ G + V R G P+
Sbjct: 144 ICSGCGSKGTLLEDQSSSVLVCSECGMI-NDDLLDHGPEWRQYYNDDGRGEGVNRCGCPS 202
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
N T++A +G +W N +R L F+ I+T+ + +
Sbjct: 203 NFFFPKSSQGTILA----GTGSGRLKRKQKW-NSTVYKERSLNDVFEKISTICSKSNIPR 257
Query: 124 TIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I D A +YKK+ D K RG N+ +++AAC+Y AC PRTVK A
Sbjct: 258 IIADTAKILYKKLSDCKHKSGNNVGKQIIIRGHNRISIIAACIYKACEMNKNPRTVKEIA 317
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + C CGLVLE ID EWR F ++ RVG
Sbjct: 35 TKTVCPECGSR-QLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGA 92
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 93 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 152
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ M+ LGL +++ A +Y+ ++ RGR+ + + AA LY ACRQ + PRT+
Sbjct: 153 ELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTL 210
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T ++FD G+ VC+ CGLV+E + D EWR F + N R G P
Sbjct: 83 VCPSCG-STALIFDSERGELVCNNCGLVIEENVTDTGPEWRAF-DADQRNSRARTGAPMK 140
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIA 113
+ GL T I N G + S + +W R S + +R ++A +
Sbjct: 141 YTRPNKGLVTEIDLYNKDIRGVRIPSKRQAQLYRMRKWHKRASIASSSERNYLIALPELN 200
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+S LGL I++ A +Y+K RGR + ++ A +Y ACR+ PRT+
Sbjct: 201 RVSSYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTL 255
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C +CGLVL +ID EWR+F + D DP R G P D GLST I +G+
Sbjct: 23 ETICEDCGLVLAEDAIDRGPEWRSFDD---DTDPRRTGAPLTRSRHDRGLSTKIGYGSGS 79
Query: 83 SGEFLS----------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
+ S + L R NR S +R + F I ++ L L + +++A
Sbjct: 80 DSTYSSRVTGRKRRQIARLRREHNRAQISSKAERNQVYGFTEIRRVNALLSLPESAREQA 139
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++K + + +GR+ + AA +Y CR PRT+
Sbjct: 140 CALFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTI 178
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + G+ VC +CGL+LE+ +ID EWR F N S RVG PT
Sbjct: 27 CPECESAS-LTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ ++ IY++ + RGR+ +A+ A+ LY ACR+E PR+++
Sbjct: 145 MASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEGIPRSLE 199
>gi|448734087|ref|ZP_21716315.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445800941|gb|EMA51287.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 268
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ G+ VC +CGL+LE+ +ID EWR F N + RVG PT
Sbjct: 27 CPECESAS-LIKSADQGELVCEDCGLILENDNIDRGPEWRAF-NHAERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRTQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ RGR+ +A+ A+ LY ACR+E PR+++
Sbjct: 145 MASALGVPRSVREVASVIYRRALSADLIRGRSIEAVAASALYAACRKEGIPRSLE 199
>gi|441432208|ref|YP_007354250.1| transcription initiation factor TFIIB [Acanthamoeba polyphaga
moumouvirus]
gi|323651370|gb|ADX97531.1| transcription factor IIB [Moumouvirus]
gi|440383288|gb|AGC01814.1| transcription initiation factor TFIIB [Acanthamoeba polyphaga
moumouvirus]
Length = 451
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGG 61
+ C C ++ D + VCSECG V+ ID EWR + N+ G + + R G
Sbjct: 132 NKICCGCGSKGTLIEDIQSSVIVCSECG-VINDELIDRGPEWRQYNNDDGRGEGINRCGC 190
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRL 119
P+NP T+I N +S L R Q N +R L F+ I T+ +
Sbjct: 191 PSNPFFPKSSQGTIIVGAN-------NSRLKRKQKWNSTVYKERSLNNVFEYITTICNNN 243
Query: 120 GLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTV 168
+ I D A +YK++ D K RG N+ +++AAC++ AC PR+V
Sbjct: 244 NIPKIITDSAKILYKRLSDCKHKTGTNKGKQIIIRGNNRSSIIAACVFKACEMNKHPRSV 303
Query: 169 KGTA 172
K A
Sbjct: 304 KEIA 307
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D SA + VC++CGLV++ +D EWR+F E R G P
Sbjct: 8 CPEC----DGAIDASAREAVCTQCGLVVDEDQLDRGPEWRSF--EDDGEQKARTGAPLTR 61
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R +R GS DR + F I + RL
Sbjct: 62 SRHDRGLSTEIGRSTRLKGRKRRQMARLRREHSRAQTGSKRDRNQRIGFIEIRRLVSRLD 121
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L +TI+DRA +++ ++ GR+ + AA +Y CR + RTV+ A
Sbjct: 122 LSSTIRDRACVLFESAQEADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVA 173
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +++ D+ + C CGLVLE ID EWR F ++ RVG P
Sbjct: 38 VCPECGSR-QLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGAPMT 95
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N S G +SS L +WQ R + +R L A +
Sbjct: 96 FTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 155
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ A
Sbjct: 156 RMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIA 214
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + +D+ + VC +CG ++E ID EWR F + R G P
Sbjct: 177 CPECG-STNLRWDYEKAELVCLDCGAIIEESLIDFGPEWRAF-DSYQKAKRQRTGSPIKY 234
Query: 66 LLADGGLSTVIAKPN-GASGEFLS----SSLGR---WQNR---GSNPDRGLILAFKTIAT 114
+ GL T I K N G LS S +GR W R S+ +R L +A +
Sbjct: 235 TKPNKGLVTEIDKYNRDIRGSKLSPQAASQMGRLRKWHKRSSIASSIERNLTIAMGDLER 294
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+S LGL + I++ A +Y+K ++ RGR ++++AA +Y+ CRQ PRT+
Sbjct: 295 ISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTL 348
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
CK + + D G+ C CGL+L + D + E + E R G T+ +
Sbjct: 18 CKTYPAIT-DSERGEIFCGGCGLILVQNLADTSYENNGYTQEDFMKQA-RTGPSTSLTMF 75
Query: 69 DGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRLG 120
D GLSTVI +SG LSS L W R S L AF + +M +LG
Sbjct: 76 DKGLSTVIGNNKDSSGNALSSKTKYEFNRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLG 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ + + A IY+K+ K +RGR +L++A LY +CR+ + PRT+
Sbjct: 136 IPDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYASCRENNIPRTL 183
>gi|15897826|ref|NP_342431.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284175630|ref|ZP_06389599.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|384434375|ref|YP_005643733.1| Zinc finger TFIIB-type domain protein [Sulfolobus solfataricus
98/2]
gi|14195236|sp|P58110.1|TF2B2_SULSO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|13814125|gb|AAK41221.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-2)
[Sulfolobus solfataricus P2]
gi|261602529|gb|ACX92132.1| Zinc finger TFIIB-type domain protein [Sulfolobus solfataricus
98/2]
Length = 293
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK + +D G VC+ C V+E ++D +WR + N N+ RVG P+ P
Sbjct: 3 CPYCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRLGLVA 123
+ D G T+I A + + R QN R S D+ L+ + S +L L
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPE 120
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+K+ A+ I +K+ + ++ +Q L+ A LY +C+ + PR ++
Sbjct: 121 HVKETASLIIRKMVETGLTKRIDQYTLIVAALYYSCQVNNIPRHLQ 166
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGGPT 63
C C K +++ D S G+ C+ CG V IDE E + + SGDN D R G P
Sbjct: 15 CQRCSKK-QIITDLSIGEIFCASCGFV-----IDEKIENLGYESGSGDNQKDTRRTGAPI 68
Query: 64 NPLLADGGLSTVIAKPN----GASGEF-LSSSLGRWQNR------GSNPDRGLILAFKTI 112
D GLSTVI+ N G S F SS++ R + + D +AF +
Sbjct: 69 TLSRNDFGLSTVISSENTDVHGKSIPFAFSSTVKRIRIQDARSRLAKRSDASFNVAFDFL 128
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ D+L + ++K+ A IY+K ++K + GR+ +++AA +YIACR R + A
Sbjct: 129 ERLQDKLSVSDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTLRNLSDIA 188
>gi|16120279|ref|NP_395867.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237645|ref|YP_001690848.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195240|sp|Q9HHH8.1|TF2B5_HALSA RecName: Full=Transcription initiation factor IIB 5; Short=TFIIB 5
gi|10584419|gb|AAG21002.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728422|emb|CAP15236.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 307
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 20/154 (12%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
++ +TVC++CGL+++ SID EW + + R G P P D GLSTVI
Sbjct: 33 NSAETVCADCGLIIDEQSIDRGPEW----HRDDADTAKRTGAPLTPARHDRGLSTVIGSG 88
Query: 80 NGASGEFLSS-------------SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
A G LSS S GRW+ S +R L I ++ LGL +++
Sbjct: 89 QDARGTALSSEKRRRLARMRREQSRGRWR---STKERNLGHGLTEIRRIASALGLADSVR 145
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
D+A ++++ ++++ +GR+ +A+ AA ++ ACR
Sbjct: 146 DQACQLFRTAQNERLLKGRSIEAMAAASVFGACR 179
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C + D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 28 SERVCPECGGR--LAEDEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 84
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 85 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 144
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+
Sbjct: 145 EIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVE 203
>gi|448301515|ref|ZP_21491508.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584251|gb|ELY38575.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 331
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 21 AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPN 80
A C +CGLVLE ID EWR F + + ++ RVG PT + D GLST I N
Sbjct: 46 AAQVHCEDCGLVLEEGRIDHGPEWRAF-DAAEKDEKSRVGAPTTNTMHDRGLSTNIGWQN 104
Query: 81 G-ASGEFLSSS-------LGRWQNRGSN---PDRGLILAFKTIATMSDRLGLVATIKDRA 129
A G LSS L W R DR L A I M+ LGL +++ A
Sbjct: 105 KDAYGRALSSRKRQQIQRLRTWNERFRTRDATDRNLKQALGEIDRMASALGLPENVRETA 164
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ IY++ ++ GR+ + + A LY A RQ PR++
Sbjct: 165 SVIYRRALEEDLLPGRSIEGMATAALYAAVRQAGLPRSI 203
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 26 CSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASG 84
C +CGL+LE ID +WR F ++ RVG PT + D GL+T I K A G
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQEQQKKS-RVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 85 EFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
LS+ L +WQ R D R L A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVREVASVLYR 164
Query: 135 KVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ ++ +GR+ + + LY ACR E PR+++ A
Sbjct: 165 RALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVA 202
>gi|389581846|dbj|GAB64567.1| transcription initiation factor TFIIB [Plasmodium cynomolgi strain
B]
Length = 366
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ ++ D+S G +C+ CG VLES + E EWR F + + ND RVG +
Sbjct: 48 CPDCKEKGIIICDNSEGTQICNGCGRVLESRILSEEQEWRNFHSDGQMKSNDRNRVGEVS 107
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ + ST K +S + ++ N+ D+ L+ AF + + + L +
Sbjct: 108 DIWFENNLTSTTFIK---SSKKLQHLNMMTQINKS---DQTLLAAFNILKLICETFFLRS 161
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +RA EI K+++D + + R + + A +Y+ACR+ +++K
Sbjct: 162 NVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIK 207
>gi|15230282|ref|NP_191296.1| cyclin family protein [Arabidopsis thaliana]
gi|6735316|emb|CAB68143.1| putative protein [Arabidopsis thaliana]
gi|39545882|gb|AAR28004.1| TFIIB4 [Arabidopsis thaliana]
gi|332646126|gb|AEE79647.1| cyclin family protein [Arabidopsis thaliana]
Length = 360
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 93/221 (42%), Gaps = 67/221 (30%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMR 219
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C VV D + GD VC CGL+L+S ++D + +WR F ++ + G P P
Sbjct: 43 CPRCGSKN-VVEDPNTGDLVCQNCGLILDSSALDFSKDWRAFDSDEY-IERAHAGAPITP 100
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN-PDRGLILAFKTIATMSDRLGLVAT 124
L GL T I GAS + ++ L R Q ++ ++ + A + I +D L L
Sbjct: 101 LRPGFGLDTDIVLTKGASKKSVNL-LKRAQKHAADSKEKTIEPALRKIRDAADSLVLPQE 159
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ A +Y+ +GR+ DA++AA +Y ACR+ D P+T++
Sbjct: 160 TIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLE 204
>gi|406699681|gb|EKD02880.1| transcription initiation factor IIB [Trichosporon asahii var.
asahii CBS 8904]
Length = 403
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 46 TFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG------- 98
TFA + G +DP RVGGP+NPLL L T I+ +G +G +S L R QNR
Sbjct: 48 TFAGDEGGDDPSRVGGPSNPLLGHAPLETSISGRDGRTG--MSRDLQRAQNRANQQATAT 105
Query: 99 -----SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAA 153
S P + L AF I + D + L +I +RA Y ++Q S+G++ D ++AA
Sbjct: 106 ASGTRSTPAQ-LQAAFSRINEVCDSMQLPRSIAERAQHAYVIGDEQSVSKGKHPDTIIAA 164
Query: 154 CLYIACRQEDKPRTVK 169
C+ ACR R+ +
Sbjct: 165 CVLFACRAAGAARSFR 180
>gi|322510756|gb|ADX06070.1| putative transcription initiation factor IIB [Organic Lake
phycodnavirus 1]
Length = 333
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 7 SDCKKHTEVVFDHSAGDTVCSE--CGLVLESHSIDETSEWRTF-ANESGDNDPVRVGGPT 63
S CK ++ G CS CG++++ +ID ++EWR + A+++ DP R G P
Sbjct: 27 SRCKSCEYLLKITEEGFYCCSNRSCGIIIK-ETIDYSAEWRFYGADDNSGADPSRCGMPI 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
NPLL + I N ++ E + R+ S P ++ F+ I T++ + G+
Sbjct: 86 NPLLKESSFGCRIMCNNNSTYEM--RKIRRYTEWQSMPYKEKSKYEDFQIITTLASKGGI 143
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I A Y K+ D+K+ RG N+D LLAA +YI+ PRT + A
Sbjct: 144 SKLIIQDAIRYYDKISDKKTYRGLNRDGLLAASIYISFSVNGNPRTSREIA 194
>gi|401887732|gb|EJT51711.1| transcription initiation factor IIB [Trichosporon asahii var.
asahii CBS 2479]
Length = 420
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 46 TFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG------- 98
TFA + G +DP RVGGP+NPLL L T I+ +G +G +S L R QNR
Sbjct: 48 TFAGDEGGDDPSRVGGPSNPLLGHAPLETSISGRDGRTG--MSRDLQRAQNRANQQATAT 105
Query: 99 -----SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAA 153
S P + L AF I + D + L +I +RA Y ++Q S+G++ D ++AA
Sbjct: 106 ASGTRSTPAQ-LQAAFSRINEVCDSMQLPRSIAERAQHAYVIGDEQSVSKGKHPDTIIAA 164
Query: 154 CLYIACRQEDKPRTVK 169
C+ ACR R+ +
Sbjct: 165 CVLFACRAAGAARSFR 180
>gi|91806596|gb|ABE66025.1| transcription factor IIB family protein [Arabidopsis thaliana]
Length = 362
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 93/221 (42%), Gaps = 67/221 (30%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMR 219
>gi|116831306|gb|ABK28606.1| unknown [Arabidopsis thaliana]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 93/221 (42%), Gaps = 67/221 (30%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMR 219
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKS-RVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRN 146
M+ LGL ++++ A+ IY++ D+ GR+
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRS 199
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKS-RVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRN 146
M+ LGL ++++ A+ IY++ D+ GR+
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRS 199
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C DC + +TVC +CGLVL + ID EWR F+ + D R G
Sbjct: 19 TNNACPDCGGDVST----NTAETVCDDCGLVLSEYQIDHGPEWRLFS--ADDEGKKRTGA 72
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKT 111
P P D GLS+ I A+G LS + + R Q+RG S +R L
Sbjct: 73 PLTPTRHDRGLSSEIGYKRDANGRTLSGKKRQQVARMRREQSRGRFQSKAERNLAHGLGE 132
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
+ ++ L L + +D+A +++ + + RGR+ +A+ AA +Y CR RT++
Sbjct: 133 VRRIAGALELSESTRDQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRTLEEI 192
Query: 172 A 172
A
Sbjct: 193 A 193
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VCS CGLV+ +ID EWR+F+++ D D R G P D GLST I +
Sbjct: 21 ESVCSGCGLVVGEDAIDPGPEWRSFSDD--DTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ +GR + AA +Y CR E RTV
Sbjct: 137 AQNEDLLKGRTLEGFAAAAIYATCRTEGVARTV 169
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECG-SADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKPN----GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
+ L LST + GA GE + S R + I ++D
Sbjct: 69 ADARLNSLSLSTYLVDTKKSGGGADGEPGHKHKRPNISSDSAKVRRMQRNMARIQEVADY 128
Query: 119 LGLVATIKDRANEIYKKVEDQK-SSRGRNQDALLAACLYIACRQEDKPRTVK 169
L L I + A ++Y + E Q + RG ++++ A L+IACR+ R++K
Sbjct: 129 LSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLK 180
>gi|451927601|gb|AGF85479.1| initiation factor TFIIB [Moumouvirus goulette]
Length = 460
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGG 61
+ C C ++ D + VCSECG V+ ID EWR + N+ G + + R G
Sbjct: 141 NKICCGCGSKGTLIEDIQSSVIVCSECG-VINDELIDRGPEWRQYNNDDGRGEGINRCGC 199
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRL 119
P+NP T+I N +S L R Q N +R L F+ I T +
Sbjct: 200 PSNPFFPKSSQGTIIVGAN-------NSRLKRKQKWNSTVYKERSLNNVFEYITTNCNNN 252
Query: 120 GLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTV 168
+ I D A +YK++ D K RG N+ +++AAC++ AC PR+V
Sbjct: 253 NIPKIITDSAKILYKRLSDCKHKSGANKGKQIIIRGNNRSSIIAACVFKACEMNKHPRSV 312
Query: 169 KGTA 172
K A
Sbjct: 313 KEIA 316
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F ++ G+ + R G P
Sbjct: 24 CPECSGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSFEDDDGNCE--RTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
D GLST I A LSS + R +RG S +R L + +
Sbjct: 78 ARHDRGLSTEIGCRTDARNNALSSQKRRQLARMRREHSRGRFQSKAERNLAHGLGEVRRI 137
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ LGL +I+++A ++++ + + GR+ +A+ AA +Y CR +P T
Sbjct: 138 TSALGLADSIREQACQLFRSAQRENLLLGRSIEAIAAASVYGVCRCHGRPIT 189
>gi|448413280|ref|ZP_21577117.1| Transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667095|gb|ELZ19743.1| Transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 328
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FCS+C +V +HS +T C ECG+V +D + W +S G PT
Sbjct: 33 FCSECNTDEFLVTEHS--ETYCKECGVVTSGEPLDRSRRW----VDSRSGRERERGAPTT 86
Query: 65 PLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNRGSNP---DRGLILAFKTIAT 114
L D GLST I +G +LS S L +W +R P R L IA
Sbjct: 87 LRLYDKGLSTDIGYYRDGNGHWLSNKTRRRFSRLRKWDSRSKTPSKRQRSLREGLVEIAR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ L L +I DRA +Y++ GR+ +A+ LY ACR E PR ++ A
Sbjct: 147 LVSALELGDSIHDRAVAVYREAWSNDFLPGRSIEAIATGSLYAACRLERLPRHLEEIA 204
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T FC C ++ V D G+ +CS CG V+ ++ D E R +N S D R G
Sbjct: 10 TKLFCDYCHA-SKFVTDQITGEIICSSCGFVISENAEDRGLERRLISNTS---DTARTGP 65
Query: 62 PTNPLLADGGLSTVIA--------KPNGASGEFLSSSLGRWQNRG---SNPDRGLILAFK 110
+ D GL+T I KP A + L +W +R ++ ++ L A
Sbjct: 66 GLTLKMHDKGLNTRIGVQNKDSVGKPLSAKTTQMFGRLRKWDSRSQTKNSAEKNLRFALI 125
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ +LGL T+ +RA+ Y+K ++ RGR ++ AACLY +CR + RT+
Sbjct: 126 EFDKVQSKLGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTE 185
Query: 171 TA 172
A
Sbjct: 186 IA 187
>gi|389848542|ref|YP_006350780.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448618694|ref|ZP_21666806.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388245848|gb|AFK20793.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445746072|gb|ELZ97535.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 319
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC +CGLV++ ID EWRT + R G P D GLST I + A
Sbjct: 50 ETVCEDCGLVIDEQRIDHGPEWRTHDQDQRK----RTGAPLTAARHDRGLSTEIGRRKDA 105
Query: 83 SGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+G LS S + R QNRG S +R L + ++ L L +++D+A ++
Sbjct: 106 NGNELSGQKRQRLSRMRREQNRGRFQSKAERNLAHGLGEVRRIASALELTDSVRDQACQL 165
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACR 160
++ +++ RGR+ +A+ AA ++ ACR
Sbjct: 166 FRSAQNEDLLRGRSIEAIAAASVHGACR 193
>gi|340345797|ref|ZP_08668929.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520938|gb|EGP94661.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 306
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGPTNP 65
CK + ++ D G+ C CG+VL + D ++E N G D + R G T+
Sbjct: 18 CKTY-PIITDSERGEMFCGGCGIVLVQNISDTSNE----GNGYGQEDFLKLSRTGPATSL 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSD 117
+ D GLS+VI +SG LS+ L W R S L AF + M
Sbjct: 73 TMYDRGLSSVIGANKDSSGNTLSNKTKYDFKRLRTWDQRSKSRSTVSLSKAFTILNGMKT 132
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+LG+ ++ + A IY+K+ K +RGR +L++A LY ACR+ + PRT+ A
Sbjct: 133 KLGIPDSVVENAAYIYRKISSAKLTRGRTMASLVSASLYAACRENNIPRTLDDIA 187
>gi|448726066|ref|ZP_21708488.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445796834|gb|EMA47327.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 329
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
T C +C E DH G+T C ECG +++ + ID EWR + D RVG
Sbjct: 27 QTLTVCPECDGRLE--HDHKHGETACVECGFIVDENEIDHGPEWRAHTADERDQRS-RVG 83
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRG--SNP-DRGLILAF 109
PT +L D G+ST I N A G LSS L W R +NP +R L A
Sbjct: 84 SPTTKMLHDEGVSTEIDWRNEDAYGNSLSSRQRQKVNRLRTWHTRSQTTNPQERNLKHAL 143
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL 150
I M+ LGL + ++ A+ IY++ D+ RGR+ + +
Sbjct: 144 GEIGRMASALGLPQSTRETASVIYRRALDEDLLRGRSIEGM 184
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
CK + + D G+ VC CGL+L + D + E + E R G T+ +
Sbjct: 18 CKTYPAIT-DSERGEIVCGGCGLILVQNLADASYENNGYTQEDFMKQA-RTGPATSLTMF 75
Query: 69 DGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRLG 120
D GLSTVI +SG L S L W R S L AF + +M +L
Sbjct: 76 DKGLSTVIGSNKDSSGNALPSKTKYEFNRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLS 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ + + A IY+K+ K +RGR +L++A LY ACR+ + PRT+
Sbjct: 136 VPDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYAACRENNIPRTL 183
>gi|448447532|ref|ZP_21591095.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
gi|445815444|gb|EMA65368.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
Length = 308
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ ID EWR + +E + R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRPYDDEGCE----RTGAPLTAARHDRGLSTEIGRG 89
Query: 80 NGASGEFLS-------------SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
A G LS + GRW+ S +R L + ++ L L +++
Sbjct: 90 TDAKGNELSGQKRRRLARMRREQTRGRWR---SKAERNLAHGLGEVRRLASALELSDSVR 146
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
D+A ++++ +++ RGR+ +A+ AA +Y ACR + R V
Sbjct: 147 DQACQLFRSAQNEDLLRGRSIEAIAAASIYGACRCNGRSRLV 188
>gi|222475803|ref|YP_002564324.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222454174|gb|ACM58438.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 308
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGGLSTVIAK 78
+A +T+C +CGLV++ ID EWRT D D R G P D GLST I +
Sbjct: 34 NAIETICEDCGLVIDEQRIDHGPEWRTH-----DQDQRKRTGAPLTAARHDRGLSTEIGR 88
Query: 79 PNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDR 128
A+G LS S + R Q+RG S +R L + +S L L +++D+
Sbjct: 89 GKDANGNNLSGQKHQRLSRMRREQSRGRFQSKAERNLAHGLGEVRRISGALELSNSVRDQ 148
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
A ++++ +++ RGR+ +A+ AA +Y ACR
Sbjct: 149 ACQLFRSAQNENLLRGRSIEAIAAASVYGACR 180
>gi|221052252|ref|XP_002257702.1| transcription initiation factor tfiib [Plasmodium knowlesi strain
H]
gi|193807533|emb|CAQ38038.1| transcription initiation factor tfiib, putative [Plasmodium
knowlesi strain H]
Length = 366
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ ++ D+S G +C+ CG VLES + E EWR F++ + +D RVG +
Sbjct: 48 CPDCKEKGIIICDNSEGTQICNGCGRVLESRILSEEQEWRNFSSDGQMKSSDRNRVGEVS 107
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ + ST K +S + ++ N+ D+ L+ AF + + + L +
Sbjct: 108 DIWFENNLTSTTFIK---SSKKLQHLNMMTQINKS---DQTLLAAFNILKLICETFFLRS 161
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ +RA EI K+++D + + R + + A +Y+ACR+ +++K
Sbjct: 162 NVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIK 207
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 17 FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI 76
D + +T C +CGLV+ +D EWR F E G D R G P D GLST I
Sbjct: 1 MDDAGEETYCLDCGLVIGEDRVDRGPEWRNF--EDGP-DRKRTGAPLTRSRHDRGLSTEI 57
Query: 77 AKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+ +G L + L R NR S +R + F + M LGL +I+DRA
Sbjct: 58 GRSTRLTGRKRRLFARLRRQHNRTRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACV 117
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+++ +++ RGR+ + AA +Y CR E RT+
Sbjct: 118 LFESAQNEDLLRGRSLEGFAAAAVYAVCRTEALSRTL 154
>gi|448528671|ref|ZP_21620179.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
gi|445710411|gb|ELZ62225.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
Length = 308
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV+ ID EWR + +E + R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVINEQRIDHGPEWRAYDDEECE----RTGAPLTAARHDRGLSTEIGRG 89
Query: 80 NGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
A G LS + + R Q RG S +R L + ++ L L +++D+A
Sbjct: 90 TDAKGNELSGQKRQRLARMRREQTRGRWRSKAERNLAHGLGEVRRLASALELSNSVRDQA 149
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
++++ +++ RGR+ +A+ AA +Y ACR
Sbjct: 150 CQLFRSAQNEDLLRGRSIEAIAAASVYGACR 180
>gi|345007074|ref|YP_004809926.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322700|gb|AEN07553.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 304
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC ECGLV++ ID EWR F +++ R G P D GLST I +
Sbjct: 34 NAVETVCEECGLVVDEQRIDHGPEWRAF----DEDERERTGAPLTAARHDRGLSTEIGRR 89
Query: 80 NGASGEFLS-------------SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
A+G LS S GR+Q S +R L + + L L I+
Sbjct: 90 TDANGNTLSGQKRRRLARMRREQSRGRFQ---SKAERNLAHGLGEVRRIVSALELSEAIR 146
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACR 160
D+A ++++ +++ RGR+ +A+ AA +Y ACR
Sbjct: 147 DQACQLFRSAQNEDLLRGRSIEAIAAASVYGACR 180
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI------AK 78
VC++CGLV+E ID EWR F D RVG P +L D GLST I A
Sbjct: 64 VCTDCGLVVEDQRIDAGPEWRAFDAAERDKRS-RVGAPMTEMLHDKGLSTTIGFDKTDAY 122
Query: 79 PNGASGEFLSSSLGR--WQNRGSNP---DRGLILAFKTIATMSDRLGLVATIKDRANEIY 133
N G W R DR L A I M+ LGL I++ A+ IY
Sbjct: 123 GNALGGRKRRQLKRLRTWNRRSKTENAHDRNLRHALGEIDRMASALGLPEPIRETASVIY 182
Query: 134 KKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
++ D+ RGR+ + + AA LY A R + R++
Sbjct: 183 RRALDEDLLRGRSIEGMAAASLYAASRLDGVARSI 217
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC+ CGLV+ +ID EWR+F ++ + + R G P D GLST I +
Sbjct: 21 ETVCASCGLVVAEDNIDHGPEWRSFEDDETNRE--RTGAPLTRSRHDRGLSTEIGRSTRL 78
Query: 83 SGEFLSSSLGR--WQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVE 137
G NR GS +R + F I + LGL I+DRA +++ +
Sbjct: 79 KGRKRRRMARMRRQHNRTKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQ 138
Query: 138 DQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
D+ RGR+ + AA +Y CR + RT+
Sbjct: 139 DEDLLRGRSLEGFAAATVYATCRTAEVSRTI 169
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 80 CPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 136
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 137 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 196
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
MS L + T ++ A+ IY++ D GR+ + + A LY A R + R++
Sbjct: 197 MSSALDIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSI 250
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V + +T C ECGLV+ + ID EWR+F E+ R G P
Sbjct: 7 CPECNGQLVAVDE----ETACDECGLVVAADEIDRGPEWRSFERETRK----RTGAPLTR 58
Query: 66 LLADGGLSTVIAKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + +G L + L R +R S +R + AF I LG
Sbjct: 59 SRHDRGLSTEIGRSTRLTGRKRRLFARLRRQHSRSRIASKAERNKVYAFTEIRRQVCALG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++DRA +++ +D RGR+ + AA +Y CR + RT+
Sbjct: 119 LSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVSRTL 166
>gi|399578474|ref|ZP_10772221.1| transcription initiation factor TFB [Halogranum salarium B-1]
gi|399236360|gb|EJN57297.1| transcription initiation factor TFB [Halogranum salarium B-1]
Length = 318
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F E D++ R G P
Sbjct: 24 CPECNGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSF--EHDDSNRERTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNR----------GSNPDRGLILAFKTIATM 115
D GLST I + G LS + R R S +R L + +
Sbjct: 78 ARHDRGLSTTIGRSTDGKGSTLSGAKRRQLARMRREHSRSRFQSKAERNLAHGLGEVRRI 137
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
+ LGL +++++A ++++ + + GR+ +A+ AA +Y CR +P
Sbjct: 138 TSALGLGGSVRNQACQLFRSAQREDLLLGRSIEAIAAASVYGICRCHGRP 187
>gi|335436552|ref|ZP_08559345.1| transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897515|gb|EGM35646.1| transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 332
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPN- 80
G+ VC +CGLV + ID EWR F N+ + RVG PT L D GLST I N
Sbjct: 48 GEIVCEDCGLVTSENRIDRGPEWRAF-NQQEREEKSRVGAPTTDKLHDKGLSTNIDWQNR 106
Query: 81 GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRAN 130
ASG LS S L W R ++ DR + M+ LGL +++ A
Sbjct: 107 DASGTPLSKSKQEQMDRLREWNTRSKTATSADRTKQTGLAEVQRMASALGLPEHVEETAC 166
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPR 166
+ K+ Q RGR+ + + AC+ +A RQ + PR
Sbjct: 167 VMLKQCVTQDLMRGRSIEGMATACITLAARQCNCPR 202
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V + +TVC++CGLV+ ID EWR+F E+ R G P
Sbjct: 7 CPECNGRLVAVGE----ETVCTKCGLVVAVDEIDRGPEWRSFERETRK----RTGAPLTR 58
Query: 66 LLADGGLSTVIAKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + +G L + L R R S +R + AF I LG
Sbjct: 59 SRHDRGLSTEIGRSTRLTGRKRRLFARLRRQHTRSRIASKAERNRVYAFTEIRRQVCALG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +++DRA +++ +D RGR+ + AA +Y CR + RT+
Sbjct: 119 LSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVSRTL 166
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,834,532,572
Number of Sequences: 23463169
Number of extensions: 116902372
Number of successful extensions: 231381
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 226752
Number of HSP's gapped (non-prelim): 2548
length of query: 172
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 40
effective length of database: 9,262,057,059
effective search space: 370482282360
effective search space used: 370482282360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)