BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030755
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 160/169 (94%), Positives = 169/169 (100%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 328 bits (842), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 162/170 (95%), Gaps = 1/170 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
GLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 170
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 327 bits (839), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 151/169 (89%), Positives = 160/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
LVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+K
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIK 169
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 177
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT K
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT K
Sbjct: 134 IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK 178
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 149 bits (376), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMN 136
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT K A
Sbjct: 137 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIA 188
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT K
Sbjct: 125 QDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFK 168
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT
Sbjct: 135 PKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRT 180
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT K
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFK 174
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 96/165 (58%), Gaps = 27/165 (16%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L T
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT K
Sbjct: 111 IVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFK 155
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFK 190
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
STVI + A G+ LS L +WQ R + DR L +A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
IK+ A IY+K ++ RGR+ ++++AA +Y ACR +PRT+ A
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIA 186
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFK 194
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + ACLY ACRQE PRT++
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLE 195
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTL 201
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158
LGL ++ +A EI KK E+++ + GR + AA LY+A
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVA 285
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVIA-KPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 186
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P + LL D G
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKG 70
Query: 72 LSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
LST I +G L +WQ+R D R L A + ++ L L ++
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A +Y++ + RGR+ +A++AAC+Y ACR PRT+ A
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIA 176
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVA 272
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ D K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIA 187
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ PRT+ A
Sbjct: 133 DSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIA 190
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ A
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIA 185
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P ++ D G
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPMTLMIHDKG 73
Query: 72 LSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LST I N +G + + L WQ R D R L A + M+ +L
Sbjct: 74 LSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLR 133
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
L +K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+
Sbjct: 134 LPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTL 181
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I + + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ A
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I + + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +K+ A IY+K Q RGR+ + ++A LY ACR + PRT+
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTL 187
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLE 201
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
A +Y++ + RGR+ ++++AAC+Y ACR PRT+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTL 172
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
I ++ + + G++ L+AA LYIA E + RT + A
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 272
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ A
Sbjct: 149 MASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVA 206
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ L + +++ A IY+K Q RGR+ + ++A LY ACR + PRT+
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTL 187
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
I M+ GL ++++ A+ IY++ + GR+ + + + LY A RQ + PR++
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 172 A 172
A
Sbjct: 206 A 206
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGR---WQNR----GSNPDRGLILAFKTI 112
G P L D G+ST+I + SG + + R W R GS +R AF +
Sbjct: 67 GEPVKLRLPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSR-ERNFFQAFLEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
++ +L L ++++ A IY+K + RGR +++L A ++ AC++ PRT + A
Sbjct: 126 ENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIA 185
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171
+ + +LG+ ++ +A EI +K +++ + G+ + AA LYIA E + RT K
Sbjct: 220 LPRFASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEI 279
Query: 172 A 172
A
Sbjct: 280 A 280
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC +CGLV++ + +D EWR F +E D RVG P + D GLST+I
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMID 83
Query: 78 KPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N A L +WQ + +R L A + S RLGL +++
Sbjct: 84 WRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRSVR 143
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ A+ +Y++ + K RGR+ + ++AA LY ACR+ + PRT+ A
Sbjct: 144 EAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIA 189
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ LGL
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALGLPD 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+++ A+ IY++ + GR+ + + +C+Y A RQ PR++ A
Sbjct: 151 NVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 199
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H+E ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G P
Sbjct: 17 CPEC--HSEHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQ-DERRARTGSPMT 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 74 YLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLN 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
+ +LG+ IK+ + IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ A
Sbjct: 134 DIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIA 192
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G
Sbjct: 7 TPKRCPECNSE-HLIRDYEHGELICADCGAVIEDAYIDQGPEWRAFDSDQ-DERRARTGS 64
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P L D GL+T I+ N G+ + + +W R + +R L LA +
Sbjct: 65 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 124
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
+ + +LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+
Sbjct: 125 LLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTL 182
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSRA-LVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172
M+ LGL +++ A IY++ ++ RGR+ + + AA LY ACRQ + PRT+ A
Sbjct: 159 MASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIA 216
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSL 207
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 TA 172
A
Sbjct: 212 IA 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,168,859
Number of Sequences: 539616
Number of extensions: 2773180
Number of successful extensions: 5150
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4894
Number of HSP's gapped (non-prelim): 187
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)