Query 030755
Match_columns 172
No_of_seqs 157 out of 1009
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 4.9E-49 1.7E-53 325.0 8.9 169 3-172 21-193 (345)
2 3k7a_M Transcription initiatio 100.0 8.4E-46 2.9E-50 306.0 3.3 167 3-172 21-193 (345)
3 3k1f_M Transcription initiatio 99.8 1.9E-21 6.5E-26 143.1 3.7 67 2-68 20-88 (197)
4 1dl6_A Transcription factor II 99.8 1.3E-19 4.6E-24 112.2 4.8 46 3-49 11-56 (58)
5 1ais_B TFB TFIIB, protein (tra 99.7 3.4E-18 1.1E-22 130.6 7.3 74 99-172 3-76 (200)
6 1pft_A TFIIB, PFTFIIBN; N-term 99.7 4.3E-17 1.5E-21 98.1 4.9 44 4-48 6-49 (50)
7 1c9b_A General transcription f 99.7 2.5E-16 8.6E-21 120.8 8.4 72 101-172 1-72 (207)
8 1ais_B TFB TFIIB, protein (tra 99.3 8.6E-13 3E-17 100.5 6.0 66 107-172 107-172 (200)
9 1c9b_A General transcription f 99.2 4.6E-11 1.6E-15 91.4 7.1 66 107-172 101-166 (207)
10 4bbr_M Transcription initiatio 99.1 1E-11 3.5E-16 102.2 0.0 67 106-172 233-299 (345)
11 1zp2_A RNA polymerase II holoe 99.1 4.4E-10 1.5E-14 87.5 8.3 67 105-171 28-95 (235)
12 3k7a_M Transcription initiatio 98.9 1E-10 3.6E-15 96.2 0.0 66 107-172 234-299 (345)
13 2ivx_A Cyclin-T2; transcriptio 98.8 1E-08 3.6E-13 80.6 8.9 66 106-171 32-97 (257)
14 2i53_A Cyclin K; cell cycle, t 98.8 1.1E-08 3.7E-13 80.5 9.0 66 106-171 42-107 (258)
15 1jkw_A Cyclin H; cell cycle, c 98.8 1.8E-08 6.1E-13 82.1 9.0 70 102-171 53-125 (323)
16 3rgf_B Cyclin-C; protein kinas 98.8 2.4E-08 8.2E-13 79.9 8.7 66 106-171 44-110 (285)
17 2pk2_A Cyclin-T1, protein TAT; 98.8 2.1E-08 7.2E-13 82.8 8.4 66 106-171 39-104 (358)
18 2b9r_A Human cyclin B1; cell c 98.3 1.8E-06 6.2E-11 68.4 7.9 66 106-171 39-105 (269)
19 2cch_B Cyclin A2, cyclin-A; co 98.1 3.5E-06 1.2E-10 66.3 6.3 67 105-171 39-106 (260)
20 2w96_A G1/S-specific cyclin-D1 98.1 6.5E-06 2.2E-10 65.1 7.8 67 105-171 57-124 (271)
21 1w98_B Cyclin E, G1/S-specific 98.0 1.5E-05 5.1E-10 63.6 7.6 67 105-171 50-118 (283)
22 1g3n_C V-cyclin; cyclin-depend 98.0 8.5E-06 2.9E-10 64.0 6.1 67 105-171 51-118 (257)
23 2f2c_A Cyclin homolog, V-cycli 98.0 1.5E-05 5E-10 62.5 7.2 67 106-172 53-120 (254)
24 3h4c_A Transcription factor TF 98.0 1.7E-05 5.9E-10 59.9 6.8 65 107-171 14-81 (260)
25 1zp2_A RNA polymerase II holoe 97.8 3.5E-05 1.2E-09 59.6 6.3 59 107-165 133-191 (235)
26 3g33_B CCND3 protein; Ser/Thr 97.7 6.7E-05 2.3E-09 60.4 6.9 67 105-171 71-138 (306)
27 2ivx_A Cyclin-T2; transcriptio 97.6 0.0002 6.8E-09 55.9 8.1 61 107-167 145-206 (257)
28 2i53_A Cyclin K; cell cycle, t 97.6 0.00018 6.1E-09 56.2 7.7 61 107-167 150-214 (258)
29 3rgf_B Cyclin-C; protein kinas 97.3 0.00024 8.2E-09 56.6 5.3 59 107-165 156-214 (285)
30 2b9r_A Human cyclin B1; cell c 97.3 0.00053 1.8E-08 54.0 7.1 62 107-168 137-198 (269)
31 2js4_A UPF0434 protein BB2007; 97.3 0.00025 8.7E-09 44.8 3.9 30 2-33 7-36 (70)
32 2jr6_A UPF0434 protein NMA0874 97.2 0.00029 1E-08 44.2 3.7 30 2-33 7-36 (68)
33 2jny_A Uncharacterized BCR; st 97.2 0.00032 1.1E-08 43.9 3.7 30 2-33 9-38 (67)
34 1vq8_Z 50S ribosomal protein L 97.2 0.00019 6.5E-09 46.9 2.3 31 4-36 28-58 (83)
35 2pk7_A Uncharacterized protein 97.1 0.00027 9.3E-09 44.5 2.9 29 3-33 8-36 (69)
36 2hf1_A Tetraacyldisaccharide-1 97.1 0.00027 9.1E-09 44.4 2.2 29 3-33 8-36 (68)
37 2pk2_A Cyclin-T1, protein TAT; 97.0 0.00041 1.4E-08 57.0 3.8 61 107-167 152-213 (358)
38 1qxf_A GR2, 30S ribosomal prot 97.0 0.00043 1.5E-08 42.8 2.5 30 4-34 8-37 (66)
39 2r7g_A PP110, retinoblastoma-a 96.9 0.0024 8.1E-08 52.2 7.2 68 104-171 214-284 (347)
40 3j20_W 30S ribosomal protein S 96.9 0.00056 1.9E-08 42.0 2.5 30 4-34 16-45 (63)
41 2cch_B Cyclin A2, cyclin-A; co 96.9 0.0011 3.8E-08 51.8 4.9 63 107-169 138-202 (260)
42 4ell_A Retinoblastoma-associat 96.8 0.0029 1E-07 52.8 7.1 66 106-171 280-348 (411)
43 1f5q_B Gamma herpesvirus cycli 96.7 0.0031 1.1E-07 49.3 6.2 66 106-171 50-116 (252)
44 2xzm_6 RPS27E; ribosome, trans 96.6 0.00094 3.2E-08 42.9 2.3 30 4-34 33-62 (81)
45 4elj_A Retinoblastoma-associat 96.6 0.007 2.4E-07 53.3 8.1 68 104-171 523-593 (656)
46 3m03_A ORC6, origin recognitio 96.5 0.0058 2E-07 40.7 5.6 54 112-167 6-65 (95)
47 3u5c_b RP61, YS20, 40S ribosom 96.5 0.0011 3.8E-08 42.7 1.9 30 4-34 35-64 (82)
48 1jkw_A Cyclin H; cell cycle, c 96.3 0.004 1.4E-07 50.3 4.9 48 119-166 181-228 (323)
49 3iz6_X 40S ribosomal protein S 96.3 0.0014 4.9E-08 42.5 1.5 30 4-34 37-66 (86)
50 3j20_Y 30S ribosomal protein S 96.1 0.0053 1.8E-07 36.0 3.2 28 4-33 20-47 (50)
51 2w96_A G1/S-specific cyclin-D1 95.9 0.013 4.6E-07 45.9 5.8 57 107-163 156-216 (271)
52 2qdj_A Retinoblastoma-associat 95.8 0.021 7.1E-07 45.9 6.5 59 111-170 5-68 (304)
53 2akl_A PHNA-like protein PA012 95.8 0.023 7.8E-07 39.7 5.8 28 3-33 27-54 (138)
54 1g3n_C V-cyclin; cyclin-depend 95.5 0.014 4.8E-07 45.4 4.7 58 107-164 150-211 (257)
55 2kpi_A Uncharacterized protein 95.4 0.016 5.5E-07 34.7 3.6 27 3-33 10-38 (56)
56 2f2c_A Cyclin homolog, V-cycli 95.4 0.016 5.3E-07 45.1 4.3 55 108-162 152-210 (254)
57 2k4x_A 30S ribosomal protein S 94.9 0.013 4.3E-07 35.1 2.1 29 3-33 18-46 (55)
58 2k5r_A Uncharacterized protein 94.8 0.014 5E-07 38.9 2.4 31 1-33 6-63 (97)
59 6rxn_A Rubredoxin; electron tr 94.8 0.0081 2.8E-07 34.6 0.8 27 1-31 2-38 (46)
60 1qyp_A RNA polymerase II; tran 94.6 0.033 1.1E-06 33.3 3.3 31 4-35 16-55 (57)
61 1k81_A EIF-2-beta, probable tr 94.4 0.018 6E-07 31.4 1.6 29 5-33 2-31 (36)
62 4rxn_A Rubredoxin; electron tr 94.3 0.019 6.5E-07 34.2 1.7 18 1-22 1-18 (54)
63 3g33_B CCND3 protein; Ser/Thr 94.2 0.067 2.3E-06 42.8 5.3 57 108-164 171-231 (306)
64 1e8j_A Rubredoxin; iron-sulfur 94.1 0.017 5.7E-07 34.1 1.2 19 1-23 1-19 (52)
65 1nui_A DNA primase/helicase; z 93.8 0.044 1.5E-06 42.5 3.5 28 4-32 15-42 (255)
66 3j21_i 50S ribosomal protein L 93.7 0.047 1.6E-06 35.3 2.9 33 3-37 35-67 (83)
67 4elj_A Retinoblastoma-associat 93.3 0.19 6.6E-06 44.2 6.9 59 111-170 7-70 (656)
68 1ffk_W Ribosomal protein L37AE 93.1 0.051 1.7E-06 34.3 2.2 31 4-36 28-58 (73)
69 3iz5_m 60S ribosomal protein L 93.1 0.062 2.1E-06 35.4 2.7 31 3-35 36-66 (92)
70 3cc2_Z 50S ribosomal protein L 93.1 0.05 1.7E-06 37.3 2.3 31 4-36 61-91 (116)
71 3h0g_I DNA-directed RNA polyme 93.0 0.089 3.1E-06 36.0 3.6 31 2-34 3-37 (113)
72 1twf_L ABC10-alpha, DNA-direct 93.0 0.037 1.3E-06 34.7 1.4 27 4-33 29-56 (70)
73 1twf_I B12.6, DNA-directed RNA 92.9 0.06 2E-06 37.4 2.6 34 1-34 2-37 (122)
74 3izc_m 60S ribosomal protein R 92.8 0.07 2.4E-06 35.1 2.6 31 3-35 36-66 (92)
75 3jyw_9 60S ribosomal protein L 92.8 0.057 1.9E-06 34.0 2.1 32 3-36 26-57 (72)
76 4a17_Y RPL37A, 60S ribosomal p 92.6 0.075 2.6E-06 35.6 2.6 29 4-34 37-65 (103)
77 1dxg_A Desulforedoxin; non-hem 91.9 0.09 3.1E-06 28.4 2.0 27 3-32 6-32 (36)
78 2v3b_B Rubredoxin 2, rubredoxi 91.5 0.06 2E-06 32.1 1.1 18 1-22 1-18 (55)
79 1dx8_A Rubredoxin; electron tr 90.8 0.089 3E-06 32.9 1.4 8 4-11 8-15 (70)
80 1tfi_A Transcriptional elongat 90.6 0.3 1E-05 28.4 3.5 29 3-32 9-46 (50)
81 1gh9_A 8.3 kDa protein (gene M 90.3 0.18 6.1E-06 31.6 2.5 27 4-34 5-31 (71)
82 1w98_B Cyclin E, G1/S-specific 90.2 0.44 1.5E-05 37.4 5.3 52 107-159 150-213 (283)
83 2kn9_A Rubredoxin; metalloprot 90.2 0.091 3.1E-06 33.8 1.1 16 21-36 25-40 (81)
84 3qt1_I DNA-directed RNA polyme 89.7 0.17 5.7E-06 35.7 2.2 29 3-33 24-56 (133)
85 1wii_A Hypothetical UPF0222 pr 88.5 0.26 8.9E-06 32.0 2.3 32 4-35 24-59 (85)
86 1gnf_A Transcription factor GA 87.9 0.14 4.7E-06 29.4 0.6 32 3-34 4-36 (46)
87 3j21_g 50S ribosomal protein L 87.7 0.2 6.8E-06 29.3 1.2 23 4-32 15-37 (51)
88 1s24_A Rubredoxin 2; electron 87.6 0.14 4.7E-06 33.4 0.6 16 21-36 33-48 (87)
89 2apo_B Ribosome biogenesis pro 87.1 0.22 7.4E-06 30.2 1.2 25 2-34 5-29 (60)
90 3u50_C Telomerase-associated p 86.1 0.49 1.7E-05 34.7 2.9 25 5-32 44-68 (172)
91 2vut_I AREA, nitrogen regulato 85.3 0.27 9.3E-06 27.7 0.9 31 4-34 2-33 (43)
92 2ct7_A Ring finger protein 31; 84.9 0.69 2.3E-05 29.7 2.9 27 5-33 27-53 (86)
93 3ga8_A HTH-type transcriptiona 84.2 0.52 1.8E-05 29.7 2.0 29 4-33 3-46 (78)
94 3h0g_L DNA-directed RNA polyme 83.7 0.63 2.1E-05 28.4 2.1 27 4-33 22-48 (63)
95 1twf_I B12.6, DNA-directed RNA 83.5 1.4 4.9E-05 30.2 4.2 33 4-36 73-113 (122)
96 3o9x_A Uncharacterized HTH-typ 83.5 0.55 1.9E-05 32.2 2.1 32 3-35 2-48 (133)
97 2kv1_A Methionine-R-sulfoxide 83.3 0.61 2.1E-05 32.3 2.2 36 14-49 10-48 (124)
98 1yk4_A Rubredoxin, RD; electro 82.3 0.58 2E-05 27.4 1.5 12 24-35 3-14 (52)
99 2kao_A Methionine-R-sulfoxide 82.1 1.1 3.8E-05 31.0 3.1 31 19-49 16-48 (124)
100 3mao_A Methionine-R-sulfoxide 81.8 0.68 2.3E-05 31.1 1.9 30 20-49 10-41 (105)
101 4gat_A Nitrogen regulatory pro 81.8 0.38 1.3E-05 29.6 0.6 31 4-34 10-41 (66)
102 2kae_A GATA-type transcription 80.2 0.35 1.2E-05 30.2 0.0 29 4-33 9-40 (71)
103 2l1u_A MSRB2, methionine-R-sul 79.8 1.1 3.7E-05 31.9 2.4 31 19-49 33-65 (143)
104 2e9h_A EIF-5, eukaryotic trans 79.7 0.88 3E-05 32.9 2.0 30 4-33 104-136 (157)
105 2k8d_A Peptide methionine sulf 79.6 1.1 3.9E-05 32.0 2.5 31 19-49 57-89 (151)
106 3dfx_A Trans-acting T-cell-spe 78.9 0.36 1.2E-05 29.5 -0.2 31 4-34 8-39 (63)
107 2g2k_A EIF-5, eukaryotic trans 78.9 0.67 2.3E-05 33.9 1.2 29 5-33 98-129 (170)
108 3cxk_A Methionine-R-sulfoxide 78.6 1 3.6E-05 32.6 2.1 31 19-49 69-101 (164)
109 2jne_A Hypothetical protein YF 78.2 1.4 4.7E-05 29.2 2.4 29 1-34 31-59 (101)
110 1vk6_A NADH pyrophosphatase; 1 77.9 1.9 6.5E-05 33.6 3.7 31 3-35 107-137 (269)
111 2aus_D NOP10, ribosome biogene 77.8 0.71 2.4E-05 27.9 0.9 25 2-34 4-28 (60)
112 2fiy_A Protein FDHE homolog; F 77.7 2.3 7.9E-05 34.0 4.1 30 4-33 223-263 (309)
113 1l1o_C Replication protein A 7 77.6 1.4 4.7E-05 32.3 2.6 27 5-34 45-73 (181)
114 2fiy_A Protein FDHE homolog; F 77.4 1.5 5.3E-05 35.0 3.0 31 3-33 182-218 (309)
115 3e0o_A Peptide methionine sulf 77.4 1.2 4.2E-05 31.6 2.1 31 19-49 38-70 (144)
116 2kdx_A HYPA, hydrogenase/ureas 77.2 0.98 3.3E-05 30.8 1.6 21 14-34 64-84 (119)
117 3hcg_A Peptide methionine sulf 76.7 1.2 4.1E-05 31.7 1.9 31 19-49 39-71 (146)
118 3hcj_A MSRB, peptide methionin 76.6 1.3 4.3E-05 31.9 2.0 31 19-49 46-78 (154)
119 1vzi_A Desulfoferrodoxin; ferr 76.4 1.3 4.3E-05 30.8 2.0 28 4-34 8-35 (126)
120 2jrp_A Putative cytoplasmic pr 76.2 1.9 6.6E-05 27.5 2.6 29 1-34 1-29 (81)
121 1ovx_A ATP-dependent CLP prote 75.3 1.3 4.4E-05 27.3 1.6 28 3-32 18-49 (67)
122 4e2x_A TCAB9; kijanose, tetron 74.0 1.7 5.8E-05 35.4 2.5 16 24-39 54-69 (416)
123 2zjr_Z 50S ribosomal protein L 73.7 1.5 5E-05 26.4 1.5 24 4-34 31-54 (60)
124 1d0q_A DNA primase; zinc-bindi 73.6 2.9 0.0001 27.6 3.2 27 5-31 39-66 (103)
125 1u5k_A Hypothetical protein; O 73.0 2.6 8.8E-05 32.0 3.2 28 4-31 151-178 (244)
126 3q87_A Putative uncharacterize 73.0 0.77 2.6E-05 31.9 0.1 17 17-33 93-109 (125)
127 3cng_A Nudix hydrolase; struct 72.9 2.9 9.8E-05 30.2 3.3 27 3-30 3-32 (189)
128 2ds5_A CLPX, ATP-dependent CLP 72.4 1.7 5.7E-05 25.3 1.5 26 3-30 11-40 (51)
129 4esj_A Type-2 restriction enzy 72.0 2.1 7E-05 33.0 2.3 29 4-33 35-66 (257)
130 2jmo_A Parkin; IBR, E3 ligase, 71.8 2.5 8.5E-05 26.7 2.4 30 2-33 24-60 (80)
131 3p8b_A DNA-directed RNA polyme 71.1 1.4 4.7E-05 28.2 1.0 23 1-31 21-43 (81)
132 3v2d_5 50S ribosomal protein L 70.6 1.4 4.7E-05 26.5 0.9 23 4-33 31-53 (60)
133 1vfy_A Phosphatidylinositol-3- 68.6 3.9 0.00013 25.2 2.7 31 2-36 10-40 (73)
134 4gop_C Putative uncharacterize 67.3 4 0.00014 33.9 3.4 27 5-34 310-338 (444)
135 4hc9_A Trans-acting T-cell-spe 65.6 1.7 5.8E-05 29.7 0.6 31 4-34 6-37 (115)
136 3a43_A HYPD, hydrogenase nicke 65.2 1.7 5.7E-05 30.6 0.6 21 14-34 61-81 (139)
137 1rfh_A RAS association (ralgds 64.6 5.6 0.00019 23.4 2.8 26 4-35 23-48 (59)
138 3bvo_A CO-chaperone protein HS 64.5 2.6 8.9E-05 31.6 1.5 28 4-34 11-38 (207)
139 2con_A RUH-035 protein, NIN on 63.6 3.2 0.00011 26.3 1.6 12 1-12 28-39 (79)
140 3p2a_A Thioredoxin 2, putative 63.1 2.9 9.9E-05 28.5 1.5 33 4-36 6-38 (148)
141 2lk0_A RNA-binding protein 5; 62.4 3.4 0.00012 21.4 1.3 13 20-32 2-14 (32)
142 2riq_A Poly [ADP-ribose] polym 61.6 5.2 0.00018 28.8 2.6 23 4-32 79-101 (160)
143 2zkr_2 60S ribosomal protein L 61.4 2.9 9.9E-05 27.6 1.1 23 4-31 17-39 (97)
144 2j6a_A Protein TRM112; transla 59.0 1.9 6.7E-05 30.5 -0.0 18 16-33 102-119 (141)
145 3e0m_A Peptide methionine sulf 59.0 4.6 0.00016 32.3 2.1 31 19-49 205-237 (313)
146 2yw8_A RUN and FYVE domain-con 57.4 7.4 0.00025 24.5 2.6 29 4-36 20-48 (82)
147 1mzb_A Ferric uptake regulatio 56.8 4 0.00014 28.1 1.3 13 22-34 90-102 (136)
148 1kbe_A Kinase suppressor of RA 56.2 6 0.0002 22.6 1.8 24 4-34 15-38 (49)
149 3c5k_A HD6, histone deacetylas 55.6 8.4 0.00029 25.8 2.7 23 4-34 25-47 (109)
150 1f5q_B Gamma herpesvirus cycli 55.5 29 0.00098 26.5 6.1 53 107-159 148-204 (252)
151 2k1p_A Zinc finger RAN-binding 55.3 4.8 0.00016 20.9 1.1 13 20-32 3-15 (33)
152 2fe3_A Peroxide operon regulat 54.0 4.7 0.00016 28.1 1.3 12 23-34 93-104 (145)
153 2jrr_A Uncharacterized protein 52.6 6.8 0.00023 24.0 1.7 21 14-34 29-51 (67)
154 2fnf_X Putative RAS effector N 52.4 12 0.00042 22.9 2.9 29 3-37 35-63 (72)
155 1ryq_A DNA-directed RNA polyme 52.3 3.7 0.00013 25.4 0.4 19 4-30 12-30 (69)
156 1wd2_A Ariadne-1 protein homol 51.9 5.8 0.0002 23.6 1.3 29 3-33 6-36 (60)
157 1z2q_A LM5-1; membrane protein 51.8 11 0.00037 23.8 2.6 29 4-36 22-50 (84)
158 1x4u_A Zinc finger, FYVE domai 51.6 14 0.00046 23.3 3.1 29 4-36 15-43 (84)
159 2xig_A Ferric uptake regulatio 51.5 5.4 0.00019 28.0 1.3 13 22-34 98-110 (150)
160 2au3_A DNA primase; zinc ribbo 51.4 10 0.00036 31.1 3.2 27 5-31 36-63 (407)
161 2l8e_A Polyhomeotic-like prote 51.3 4.9 0.00017 23.1 0.8 21 14-34 9-29 (49)
162 2w57_A Ferric uptake regulatio 51.2 5.6 0.00019 27.9 1.3 13 22-34 89-101 (150)
163 3eyy_A Putative iron uptake re 51.1 5.7 0.00019 27.7 1.3 13 22-34 89-101 (145)
164 2xzm_9 RPS31E; ribosome, trans 51.0 12 0.0004 27.7 3.1 28 4-33 114-141 (189)
165 4ayb_P DNA-directed RNA polyme 50.9 8.4 0.00029 21.9 1.7 33 1-33 1-33 (48)
166 1dvp_A HRS, hepatocyte growth 50.6 11 0.00037 28.2 2.9 30 3-36 161-190 (220)
167 1joc_A EEA1, early endosomal a 50.4 9.6 0.00033 26.1 2.4 29 4-36 70-98 (125)
168 3mwm_A ZUR, putative metal upt 50.1 6 0.0002 27.4 1.3 12 23-34 87-98 (139)
169 3t7l_A Zinc finger FYVE domain 49.9 11 0.00036 24.2 2.4 29 4-36 21-49 (90)
170 2cpg_A REPA protein, transcrip 49.7 28 0.00097 18.5 4.3 30 106-135 11-41 (45)
171 3irb_A Uncharacterized protein 49.3 7.3 0.00025 27.4 1.7 23 4-32 48-70 (145)
172 2qsb_A UPF0147 protein TA0600; 49.2 50 0.0017 21.2 6.8 53 101-157 8-60 (89)
173 2o03_A Probable zinc uptake re 49.0 6.4 0.00022 26.8 1.3 14 21-34 81-94 (131)
174 1y07_A Desulfoferrodoxin (RBO) 49.0 7.3 0.00025 26.9 1.6 27 4-35 8-37 (128)
175 4ets_A Ferric uptake regulatio 48.3 6.5 0.00022 28.0 1.3 12 23-34 107-118 (162)
176 2jvm_A Uncharacterized protein 47.9 8.8 0.0003 24.3 1.7 22 13-34 41-64 (80)
177 2w0t_A Lethal(3)malignant brai 47.8 8.6 0.00029 21.4 1.4 17 18-34 1-17 (43)
178 2f9i_B Acetyl-coenzyme A carbo 47.6 1.9 6.6E-05 34.0 -1.8 40 4-48 31-80 (285)
179 1wfk_A Zinc finger, FYVE domai 47.3 13 0.00045 23.7 2.6 28 4-35 10-37 (88)
180 2olm_A Nucleoporin-like protei 46.3 7.1 0.00024 27.4 1.2 30 4-34 26-56 (140)
181 2qzg_A Conserved uncharacteriz 45.8 59 0.002 21.1 6.5 54 101-158 12-65 (94)
182 2iqj_A Stromal membrane-associ 45.7 6.7 0.00023 27.4 1.0 30 4-34 28-58 (134)
183 2owa_A Arfgap-like finger doma 45.2 6.8 0.00023 27.5 1.0 30 4-34 37-67 (138)
184 3dwd_A ADP-ribosylation factor 44.4 5.7 0.0002 28.2 0.4 30 4-34 39-69 (147)
185 2enz_A NPKC-theta, protein kin 44.4 21 0.00073 21.1 3.0 31 4-37 24-54 (65)
186 1ptq_A Protein kinase C delta 44.2 19 0.00066 19.8 2.7 29 4-35 12-40 (50)
187 2p57_A GTPase-activating prote 43.9 5.8 0.0002 28.1 0.4 30 4-34 38-68 (144)
188 2gnr_A Conserved hypothetical 43.0 11 0.00039 26.4 1.9 23 4-32 48-70 (145)
189 1y02_A CARP2, FYVE-ring finger 42.8 12 0.00042 25.5 1.9 30 4-37 20-49 (120)
190 2ppt_A Thioredoxin-2; thiredox 42.1 6.3 0.00022 27.4 0.4 29 4-33 15-44 (155)
191 3zyq_A Hepatocyte growth facto 41.4 17 0.00058 27.3 2.7 30 4-37 165-194 (226)
192 2crr_A Stromal membrane-associ 41.4 7.6 0.00026 27.3 0.7 30 4-34 30-60 (141)
193 2ctt_A DNAJ homolog subfamily 41.1 12 0.00043 24.3 1.7 9 4-12 46-54 (104)
194 2crw_A ARF GAP 3, ADP-ribosyla 40.2 8.2 0.00028 27.5 0.7 30 4-34 30-60 (149)
195 2da7_A Zinc finger homeobox pr 40.2 23 0.00079 21.9 2.7 24 110-136 33-56 (71)
196 3lcz_A YCZA, inhibitor of trap 38.6 12 0.00042 21.6 1.2 21 4-30 10-30 (53)
197 1vq8_1 50S ribosomal protein L 38.1 17 0.00059 21.4 1.8 22 5-31 19-40 (57)
198 1vd4_A Transcription initiatio 37.6 13 0.00045 21.2 1.3 30 5-34 16-50 (62)
199 2f9y_B Acetyl-coenzyme A carbo 37.5 9.4 0.00032 30.3 0.7 41 4-48 25-74 (304)
200 1m2k_A Silent information regu 36.6 7.1 0.00024 29.9 -0.1 34 4-41 122-160 (249)
201 2yuu_A NPKC-delta, protein kin 36.6 23 0.00078 22.1 2.4 33 4-39 29-61 (83)
202 3j21_e 50S ribosomal protein L 36.4 15 0.0005 22.1 1.3 23 4-31 18-40 (62)
203 3v2d_Y 50S ribosomal protein L 35.7 20 0.00068 24.1 2.0 31 4-34 74-107 (110)
204 2heo_A Z-DNA binding protein 1 35.3 45 0.0015 19.6 3.5 24 112-135 28-51 (67)
205 3sub_A ADP-ribosylation factor 34.9 12 0.00042 26.9 1.0 30 4-34 23-53 (163)
206 1sg7_A Putative cation transpo 34.8 43 0.0015 21.9 3.5 20 120-139 28-51 (96)
207 2xvc_A ESCRT-III, SSO0910; cel 34.4 50 0.0017 19.5 3.4 30 111-143 27-56 (59)
208 2i5o_A DNA polymerase ETA; zin 34.2 9.7 0.00033 20.7 0.2 15 21-35 7-21 (39)
209 1xd7_A YWNA; structural genomi 33.7 43 0.0015 22.9 3.7 46 111-159 25-80 (145)
210 1p91_A Ribosomal RNA large sub 33.6 18 0.00061 27.0 1.8 25 4-32 3-27 (269)
211 3uej_A NPKC-delta, protein kin 33.1 34 0.0012 20.1 2.7 30 4-36 21-50 (65)
212 1rqg_A Methionyl-tRNA syntheta 33.0 23 0.00078 31.4 2.6 23 5-34 142-164 (722)
213 2g45_A Ubiquitin carboxyl-term 32.8 27 0.00091 24.0 2.4 21 5-33 36-56 (129)
214 2dkt_A Ring finger and CHY zin 32.5 33 0.0011 24.2 2.8 7 56-62 106-112 (143)
215 2enn_A NPKC-theta, protein kin 32.4 24 0.00084 21.7 2.0 33 4-39 35-67 (77)
216 2bx9_A Anti-trap, AT, tryptoph 32.0 25 0.00085 20.2 1.8 21 4-30 10-30 (53)
217 2k9i_A Plasmid PRN1, complete 31.9 67 0.0023 17.6 4.3 30 106-135 18-48 (55)
218 2eli_A Protein kinase C alpha 31.5 35 0.0012 21.4 2.7 33 4-39 29-61 (85)
219 3obb_A Probable 3-hydroxyisobu 31.5 73 0.0025 24.7 5.1 36 106-141 247-282 (300)
220 1twf_J DNA-directed RNA polyme 31.5 14 0.00048 22.8 0.7 12 24-35 5-16 (70)
221 1x0t_A Ribonuclease P protein 31.0 36 0.0012 23.0 2.8 31 4-34 66-105 (120)
222 1ma3_A SIR2-AF2, transcription 30.9 20 0.00067 27.4 1.6 34 4-41 124-166 (253)
223 1l8d_A DNA double-strand break 30.8 15 0.00052 24.1 0.8 8 4-11 48-55 (112)
224 1y8f_A UNC-13 homolog A, MUNC1 30.6 27 0.00091 20.7 1.9 31 4-37 25-55 (66)
225 1yc5_A NAD-dependent deacetyla 30.6 22 0.00076 27.0 1.9 34 4-41 122-163 (246)
226 4glx_A DNA ligase; inhibitor, 30.4 27 0.00091 30.4 2.5 34 4-39 406-442 (586)
227 3fia_A Intersectin-1; EH 1 dom 30.4 1.2E+02 0.0043 20.3 6.9 50 113-167 55-105 (121)
228 1lko_A Rubrerythrin all-iron(I 30.2 19 0.00063 26.4 1.3 13 22-34 154-166 (191)
229 4gbj_A 6-phosphogluconate dehy 29.5 89 0.0031 24.1 5.3 36 106-141 242-277 (297)
230 2jox_A Churchill protein; zinc 29.5 17 0.00059 24.0 0.9 35 4-38 27-72 (106)
231 1ewq_A DNA mismatch repair pro 29.3 42 0.0015 30.0 3.7 24 114-137 740-763 (765)
232 3t8r_A Staphylococcus aureus C 29.3 51 0.0017 22.6 3.5 46 111-159 30-86 (143)
233 2lo3_A SAGA-associated factor 29.3 21 0.0007 19.7 1.0 18 19-36 13-30 (44)
234 2k3r_A Ribonuclease P protein 29.1 40 0.0014 22.9 2.8 31 4-34 61-100 (123)
235 3f2b_A DNA-directed DNA polyme 28.9 20 0.00068 33.4 1.5 34 5-39 504-543 (1041)
236 1faq_A RAF-1; transferase, ser 28.6 27 0.00093 19.4 1.6 27 4-37 15-41 (52)
237 2k2d_A Ring finger and CHY zin 28.3 12 0.00041 23.6 -0.1 12 23-34 37-48 (79)
238 3o47_A ADP-ribosylation factor 28.1 13 0.00045 29.3 0.2 30 4-34 38-68 (329)
239 2owo_A DNA ligase; protein-DNA 28.0 36 0.0012 30.0 2.9 34 4-39 406-442 (671)
240 1ufm_A COP9 complex subunit 4; 27.9 66 0.0023 20.1 3.5 30 112-144 33-62 (84)
241 3mpx_A FYVE, rhogef and PH dom 27.2 13 0.00045 30.3 0.0 30 4-37 376-405 (434)
242 2m0f_A Zinc finger and BTB dom 27.1 31 0.0011 15.1 1.5 12 23-34 2-13 (29)
243 3h99_A Methionyl-tRNA syntheta 27.1 22 0.00074 30.3 1.3 7 5-11 157-163 (560)
244 4dll_A 2-hydroxy-3-oxopropiona 27.1 94 0.0032 24.0 5.0 37 105-141 265-301 (320)
245 4fxe_A Antitoxin RELB; toxin/a 27.0 1.2E+02 0.004 18.8 5.5 29 107-138 11-40 (79)
246 1mul_A NS2, HU-2, DNA binding 26.8 72 0.0024 19.9 3.6 27 110-136 5-31 (90)
247 3l6d_A Putative oxidoreductase 26.8 98 0.0034 23.7 5.1 36 106-141 246-281 (306)
248 1q1a_A HST2 protein; ternary c 26.8 26 0.00088 27.3 1.6 19 23-41 163-181 (289)
249 2lfc_A Fumarate reductase, fla 26.7 78 0.0027 22.0 4.1 31 110-140 96-126 (160)
250 1b8z_A Protein (histonelike pr 26.3 68 0.0023 20.0 3.4 26 110-135 5-30 (90)
251 1wb9_A DNA mismatch repair pro 26.3 53 0.0018 29.5 3.7 25 113-137 773-797 (800)
252 2gag_D Heterotetrameric sarcos 25.9 9.2 0.00032 25.3 -0.9 11 1-11 1-11 (99)
253 3rhi_A DNA-binding protein HU; 25.8 69 0.0024 20.2 3.4 29 110-138 8-36 (93)
254 2ou3_A Tellurite resistance pr 25.7 96 0.0033 21.5 4.4 28 109-136 116-143 (161)
255 3mav_A Farnesyl pyrophosphate 25.7 2.2E+02 0.0076 22.9 7.2 48 104-151 39-86 (395)
256 1y66_A Engrailed homeodomain; 25.6 53 0.0018 18.1 2.3 24 110-136 25-48 (52)
257 1p71_A DNA-binding protein HU; 24.9 74 0.0025 20.0 3.4 35 110-144 5-39 (94)
258 2qkd_A Zinc finger protein ZPR 24.9 35 0.0012 28.2 2.1 30 4-33 221-259 (404)
259 3doj_A AT3G25530, dehydrogenas 24.9 1.1E+02 0.0038 23.4 5.1 36 106-141 258-293 (310)
260 3glr_A NAD-dependent deacetyla 24.9 27 0.00092 27.4 1.4 23 106-128 250-272 (285)
261 3flo_B DNA polymerase alpha ca 24.7 35 0.0012 25.4 2.0 30 4-35 23-61 (206)
262 2a51_A Nucleocapsid protein; s 24.7 24 0.00083 18.5 0.8 27 5-31 2-29 (39)
263 3qsg_A NAD-binding phosphogluc 24.6 1.6E+02 0.0054 22.6 5.9 44 109-152 258-304 (312)
264 4b6d_A RAC GTPase-activating p 24.5 47 0.0016 19.5 2.2 30 4-37 20-49 (61)
265 2o97_B NS1, HU-1, DNA-binding 24.4 74 0.0025 19.9 3.3 26 110-135 5-30 (90)
266 1sfu_A 34L protein; protein/Z- 24.4 1E+02 0.0035 19.1 3.8 19 112-130 32-50 (75)
267 1n0z_A ZNF265; zinc finger, RN 24.3 25 0.00085 19.5 0.8 15 18-32 9-25 (45)
268 1x68_A FHL5 protein; four-and- 24.2 41 0.0014 20.1 1.9 30 4-36 6-48 (76)
269 1ylf_A RRF2 family protein; st 24.2 60 0.0021 22.3 3.1 26 111-136 32-57 (149)
270 2gf2_A Hibadh, 3-hydroxyisobut 24.2 1.2E+02 0.004 22.8 5.1 36 106-141 244-279 (296)
271 3pef_A 6-phosphogluconate dehy 24.1 1.1E+02 0.0038 23.0 4.9 36 106-141 238-273 (287)
272 1ci3_M Protein (cytochrome F); 24.0 19 0.00065 27.4 0.4 14 19-32 14-27 (249)
273 2gmg_A Hypothetical protein PF 24.0 29 0.001 23.1 1.2 10 24-33 68-77 (105)
274 1hcz_A Cytochrome F; electron 23.7 20 0.00067 27.4 0.4 14 19-32 14-27 (252)
275 1e2w_A Cytochrome F; electron 23.7 20 0.00067 27.4 0.4 14 19-32 14-27 (251)
276 4a18_A RPL37, ribosomal protei 23.7 41 0.0014 21.8 1.9 22 5-31 18-39 (94)
277 2co8_A NEDD9 interacting prote 23.6 49 0.0017 20.2 2.3 31 4-37 16-56 (82)
278 2avu_E Flagellar transcription 23.3 25 0.00085 26.0 0.9 26 3-30 134-161 (192)
279 3g0o_A 3-hydroxyisobutyrate de 23.2 1.3E+02 0.0043 23.0 5.1 36 106-141 246-281 (303)
280 3qha_A Putative oxidoreductase 23.0 1.3E+02 0.0044 22.9 5.1 36 106-141 256-291 (296)
281 1owf_A IHF-alpha, integration 22.9 84 0.0029 20.0 3.4 31 109-139 6-36 (99)
282 2jr7_A DPH3 homolog; DESR1, CS 22.9 57 0.002 20.9 2.5 27 5-34 25-56 (89)
283 3c4i_A DNA-binding protein HU 22.5 86 0.003 20.0 3.4 30 110-139 5-34 (99)
284 3lju_X ARF-GAP with dual PH do 22.5 28 0.00095 28.3 1.1 30 4-34 35-65 (386)
285 3pdu_A 3-hydroxyisobutyrate de 22.3 1.3E+02 0.0044 22.7 4.9 36 106-141 238-273 (287)
286 1wig_A KIAA1808 protein; LIM d 22.3 31 0.001 20.6 1.0 28 4-34 6-42 (73)
287 2m0e_A Zinc finger and BTB dom 22.0 33 0.0011 15.0 1.0 7 5-11 4-10 (29)
288 1vp7_A Exodeoxyribonuclease VI 22.0 52 0.0018 21.6 2.1 37 102-138 29-65 (100)
289 3u31_A SIR2A, transcriptional 21.9 34 0.0012 26.8 1.5 18 23-41 182-199 (290)
290 2h78_A Hibadh, 3-hydroxyisobut 21.9 1.4E+02 0.0048 22.5 5.1 36 106-141 247-282 (302)
291 1we9_A PHD finger family prote 21.5 63 0.0022 18.7 2.4 24 3-30 6-29 (64)
292 1vf5_C Cytochrome F; photosynt 21.5 23 0.00078 27.5 0.4 13 19-31 15-27 (289)
293 2k5c_A Uncharacterized protein 21.5 24 0.00083 22.4 0.4 9 3-11 8-16 (95)
294 2dlo_A Thyroid receptor-intera 21.3 55 0.0019 19.7 2.2 18 21-38 13-30 (81)
295 3iz5_l 60S ribosomal protein L 21.3 29 0.001 22.5 0.8 22 5-31 18-39 (94)
296 2j9u_B VPS36, vacuolar protein 21.3 31 0.001 21.6 0.9 31 4-34 18-51 (76)
297 2jz8_A Uncharacterized protein 21.3 36 0.0012 21.8 1.2 22 13-34 37-59 (87)
298 1icw_A Interleukin-8, IL-8; cy 21.2 58 0.002 19.7 2.2 21 7-28 32-52 (72)
299 2jt1_A PEFI protein; solution 21.0 1E+02 0.0035 18.9 3.4 28 112-142 27-54 (77)
300 1qjt_A EH1, epidermal growth f 21.0 1.6E+02 0.0055 18.3 7.1 51 115-170 36-87 (99)
301 2y75_A HTH-type transcriptiona 21.0 97 0.0033 20.3 3.5 46 112-160 29-85 (129)
302 2uzg_A Ubiquitin carboxyl-term 20.8 74 0.0025 20.5 2.8 25 3-34 25-51 (97)
303 1q14_A HST2 protein; histone d 20.7 39 0.0013 27.3 1.6 18 24-41 172-189 (361)
304 1b3a_A Protein (rantes); chemi 20.6 65 0.0022 19.0 2.3 21 7-28 31-51 (67)
305 1wi3_A DNA-binding protein SAT 20.6 77 0.0027 19.4 2.6 18 111-128 37-54 (71)
306 1g2s_A Eotaxin-3; beta-BETA-be 20.5 64 0.0022 19.4 2.2 21 7-28 32-52 (71)
307 2yu4_A E3 SUMO-protein ligase 20.1 51 0.0017 20.7 1.8 29 3-39 7-36 (94)
308 1x3z_A Peptide: N-glycanase; h 20.0 96 0.0033 24.9 3.7 12 23-34 155-166 (335)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=4.9e-49 Score=325.04 Aligned_cols=169 Identities=36% Similarity=0.617 Sum_probs=152.0
Q ss_pred CCCCCCCCC-CCceeEeCCCCceEeCCCcceecccccccCcccccccCCC-CCCCCcccCCCCCccccCCCceeEEecCC
Q 030755 3 DAFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKPN 80 (172)
Q Consensus 3 ~~~C~~Cg~-~~~i~~D~~~G~~vC~~CG~V~~e~~i~~~~ewr~f~~~~-~~~~~~r~g~~~~~~~~~~~~~t~i~~~~ 80 (172)
...||+||+ ++++++|+++|++||++||+||+|++||.+||||+|++++ ++.|++|+|+|.++++||+|++|.|++++
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 458999996 4689999999999999999999999999999999998654 47899999999999999999999999765
Q ss_pred CCCcccccccccccccC--CCCchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH
Q 030755 81 GASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158 (172)
Q Consensus 81 ~~~~~~l~~~l~~~~~~--~~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYia 158 (172)
++.+ ....+|++||++ .+++|++|..++..|.++|++|+||+.++++|..||++++++++++||+.+.++|||||+|
T Consensus 101 ~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiA 179 (345)
T 4bbr_M 101 TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHH
T ss_pred Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 4321 123457888875 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCccccC
Q 030755 159 CRQEDKPRTVKGTA 172 (172)
Q Consensus 159 cR~~~~~~tl~eia 172 (172)
||++++|+||+||+
T Consensus 180 CR~~~~prtl~eI~ 193 (345)
T 4bbr_M 180 CRRAEVARTFKEIQ 193 (345)
T ss_dssp HHHTCCBCCHHHHH
T ss_pred HHhcCCCccHHHHH
Confidence 99999999999984
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-46 Score=306.03 Aligned_cols=167 Identities=37% Similarity=0.617 Sum_probs=140.0
Q ss_pred CCCCCCCCCCC-ceeEeCCCCceEeCCCcceecccccccCcccccccCC-CCCCCCcccCCCCCccccCCCceeEEecC-
Q 030755 3 DAFCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPTNPLLADGGLSTVIAKP- 79 (172)
Q Consensus 3 ~~~C~~Cg~~~-~i~~D~~~G~~vC~~CG~V~~e~~i~~~~ewr~f~~~-~~~~~~~r~g~~~~~~~~~~~~~t~i~~~- 79 (172)
...||+||+.+ ++++|+.+|++||++||+|++|++||++||||+|+++ +++.+++|+|+|.+++++|.+++|.|+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 45799999832 7999999999999999999999999999999999864 34678999999999999999999999875
Q ss_pred -CCCCcccccccccccccC--CCCchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHH
Q 030755 80 -NGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLY 156 (172)
Q Consensus 80 -~~~~~~~l~~~l~~~~~~--~~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclY 156 (172)
.+..+ .+.|++||++ .+++|++|.+++..|+.+|..|+||+.++++|..||+++++.++++||+.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 23222 1247888864 47899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCccccC
Q 030755 157 IACRQEDKPRTVKGTA 172 (172)
Q Consensus 157 iacR~~~~~~tl~eia 172 (172)
+|||++++|+|++||+
T Consensus 178 iAcR~e~~prtl~ei~ 193 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQ 193 (345)
T ss_dssp TTSBTTBSSCCHHHHH
T ss_pred HHHHHcCCCccHHHHH
Confidence 9999999999999984
No 3
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.9e-21 Score=143.07 Aligned_cols=67 Identities=33% Similarity=0.605 Sum_probs=58.5
Q ss_pred CCCCCCCCCCC-CceeEeCCCCceEeCCCcceecccccccCcccccccCCC-CCCCCcccCCCCCcccc
Q 030755 2 TDAFCSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLA 68 (172)
Q Consensus 2 ~~~~C~~Cg~~-~~i~~D~~~G~~vC~~CG~V~~e~~i~~~~ewr~f~~~~-~~~~~~r~g~~~~~~~~ 68 (172)
....||+||+. +++++|+++|++||.+||+||+|++||.+||||+|++++ ++.+++|+|+|.+++..
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 34589999982 479999999999999999999999999999999999654 46899999999887653
No 4
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.78 E-value=1.3e-19 Score=112.16 Aligned_cols=46 Identities=46% Similarity=0.832 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecccccccCcccccccC
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN 49 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~i~~~~ewr~f~~ 49 (172)
..+||+||+ ..+++|+.+|++||..||+|++|++||.|||||+|++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSN 56 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCC
Confidence 357999998 5799999999999999999999999999999999985
No 5
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.74 E-value=3.4e-18 Score=130.63 Aligned_cols=74 Identities=28% Similarity=0.577 Sum_probs=67.8
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 99 SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 99 ~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
+++|+++.+++++|.++|++|+||+.++++|..||++++++++++||+++.++|||||+|||+++.|++++||+
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~ 76 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 76 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999984
No 6
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.67 E-value=4.3e-17 Score=98.09 Aligned_cols=44 Identities=39% Similarity=0.989 Sum_probs=41.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccccccCccccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA 48 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~i~~~~ewr~f~ 48 (172)
..||+||+ ..+++|+..|++||..||+|++++.||.+||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 58999998 579999999999999999999999999999999997
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.65 E-value=2.5e-16 Score=120.85 Aligned_cols=72 Identities=53% Similarity=0.859 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 101 PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 101 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
+|+++.+++++|.++|.+|+||+.++++|..||++++.++.++|++++.++|||||+|||.++.|++++||+
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~ 72 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIC 72 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999974
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.35 E-value=8.6e-13 Score=100.46 Aligned_cols=66 Identities=30% Similarity=0.434 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
++..+|.++++.|+||+.+.+.|..|++.+.+.++..||+|.++||||||+|||..|.|+|++||+
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~ 172 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVA 172 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999974
No 9
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.17 E-value=4.6e-11 Score=91.35 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
++..+|.++++.|++|+.+.+.|..+++.+.+.++..|++|..+||||||+||+..|.|++++||+
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~ 166 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIG 166 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999998874
No 10
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.09 E-value=1e-11 Score=102.20 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
.++..+|.++|+.|+|+..+...|.+|.+.+.+.+++.||+|.++||||||+|++++|.++|++|||
T Consensus 233 ~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa 299 (345)
T 4bbr_M 233 AQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVG 299 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999999986
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.06 E-value=4.4e-10 Score=87.55 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCC-CCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRG-RNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~G-r~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
...+.++|.+++..|+||+.+..+|..+|++++..+.+++ +++..+++||||+|||.++.|++++||
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~ 95 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTI 95 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHH
Confidence 5678999999999999999999999999999999988888 999999999999999999999999987
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-10 Score=96.16 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~eia 172 (172)
++..+|.++|+.|+|+..+...|.+|.+.+.+.+++.||+|.++||||||+|++..+.++|++||+
T Consensus 234 ~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa 299 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVG 299 (345)
T ss_dssp ------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999985
No 13
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.85 E-value=1e-08 Score=80.63 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
..+.++|.+++..|+||+.+..+|..||++.+..+.++++++..+++||||+||+.+..|++++||
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~ 97 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHV 97 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHH
Confidence 558899999999999999999999999999999988999999999999999999999999999886
No 14
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.85 E-value=1.1e-08 Score=80.51 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
..+.++|.+++..|+||+.+...|..||++.+..+.++++++..+++||||+||+.+..|++++||
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~ 107 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDI 107 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHH
Confidence 568899999999999999999999999999999988999999999999999999999999999886
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=98.80 E-value=1.8e-08 Score=82.10 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=64.6
Q ss_pred hhhH-HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 102 DRGL-ILAFKTIATMSDRLG--LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 102 e~~l-~~~~~~I~~~~~~L~--Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
|..+ ....++|.++|..|+ ||..+..+|..||++.+..+.+++.++..+++||||+||+.+..|++++||
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~ 125 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQF 125 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHH
Confidence 4444 457799999999999 999999999999999999998999999999999999999999999999886
No 16
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.77 E-value=2.4e-08 Score=79.92 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCC-Ccccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPR-TVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~-tl~ei 171 (172)
..+.++|.+++..|+||+.+..+|..||++.+..+.++++++..+++||||+||+.+..|+ +++||
T Consensus 44 ~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di 110 (285)
T 3rgf_B 44 IFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRL 110 (285)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999997 56664
No 17
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=98.76 E-value=2.1e-08 Score=82.78 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
..+.++|.+++..|+||+.+..+|..||++++....++.+++..+++||||+||+.+..|++++||
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~ 104 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHV 104 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 558999999999999999999999999999999998999999999999999999999999999886
No 18
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.31 E-value=1.8e-06 Score=68.35 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC-CCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~-~~tl~ei 171 (172)
....++|.+++..++|++.+...|..++++.+....+.+++...+++||+|+||+.+.. |.+++||
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~ 105 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDF 105 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHH
Confidence 56788999999999999999999999999999998888899999999999999999887 8888876
No 19
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.14 E-value=3.5e-06 Score=66.26 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC-CCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~-~~tl~ei 171 (172)
-..+.++|.+++..++|+..+.-.|..++.+.+....+..++...+++||+|+||+.+.. |.+++||
T Consensus 39 R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~ 106 (260)
T 2cch_B 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEF 106 (260)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHH
Confidence 356789999999999999999999999999999887777778899999999999999998 8998886
No 20
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.14 E-value=6.5e-06 Score=65.12 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC-CCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~-~~tl~ei 171 (172)
-..+.++|.+++..+++++.+.-.|..++.+.+....+..++...+++||+|+||+.+.. |++++||
T Consensus 57 R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~ 124 (271)
T 2w96_A 57 RKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKL 124 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 356788999999999999999999999999999988788889999999999999999988 9998876
No 21
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.01 E-value=1.5e-05 Score=63.56 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhC-cCCCCCCHHHHHHHHHHHHHHhCCC-CCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDK-PRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~-~~~~Gr~~~~~aAAclYiacR~~~~-~~tl~ei 171 (172)
-....++|.+++..++|++.+.-.|..++.+.+.. +.+++++...+++||+|+||+.+.. |.+++||
T Consensus 50 R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~ 118 (283)
T 1w98_B 50 RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQF 118 (283)
T ss_dssp HHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Confidence 35678899999999999999999999999999987 5678899999999999999998876 8888876
No 22
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.01 E-value=8.5e-06 Score=63.96 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC-CCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~-~~tl~ei 171 (172)
-....++|-+++..++|++.+.-.|..++.+.+....+++++...+++||+|+||+.+.. |.+++|+
T Consensus 51 R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~ 118 (257)
T 1g3n_C 51 RKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSL 118 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHH
Confidence 356789999999999999999999999999999988888888999999999999997664 8888876
No 23
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.00 E-value=1.5e-05 Score=62.52 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCC-CCCCccccC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED-KPRTVKGTA 172 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~-~~~tl~eia 172 (172)
....++|-+++..++|++.+.-.|..++.+.+....+++++...+++||+|+||+.+. .|.+++|+.
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~ 120 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLT 120 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 5678999999999999999999999999999999888899999999999999999865 688888763
No 24
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.97 E-value=1.7e-05 Score=59.93 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCC---CHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGR---NQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr---~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
.+...|.++..+-.+|+.|.++|.++.+..+..+--+|. ++..+||||+.||+.+.++|+++.|+
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~ 81 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEV 81 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHH
Confidence 467788999999999999999999999999887666664 47899999999999999999999874
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.81 E-value=3.5e-05 Score=59.61 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~ 165 (172)
.+.++|.+++..+++++.+...|..+...+......-+++|..+||||||+|++..+.+
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 191 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENT 191 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999988888889999999999999999988764
No 26
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=97.72 E-value=6.7e-05 Score=60.44 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHh-CCCCCCcccc
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ-EDKPRTVKGT 171 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~-~~~~~tl~ei 171 (172)
-..+.++|.+++..++|++.+.-.|..|+.+.+....++......++++|+|+||+. +..|.++.|+
T Consensus 71 R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l 138 (306)
T 3g33_B 71 RKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKL 138 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHH
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 356889999999999999999999999999999988888889999999999999997 4467777765
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.62 E-value=0.0002 Score=55.95 Aligned_cols=61 Identities=5% Similarity=0.066 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-hCcCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRT 167 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~-~~~~~~Gr~~~~~aAAclYiacR~~~~~~t 167 (172)
.+..+|.+++..++++..+...|..+..... ...+.-+..|..+||||||+|++..|.+++
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p 206 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIP 206 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 4678999999999999999999999998876 456567899999999999999999886554
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.61 E-value=0.00018 Score=56.17 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 030755 107 LAFKTIATMSDRLGLVA----TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~----~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~t 167 (172)
.+.++|.+++..|+++. .+...|..+...+......-+.+|..+||||||+|++..|.+.+
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~ 214 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQ 214 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999987 68889999999988777777899999999999999999887654
No 29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.34 E-value=0.00024 Score=56.56 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~ 165 (172)
.+.++|.+++..|+++..+...|..+...+......-+..|..|||||||+|++..+.+
T Consensus 156 ~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~ 214 (285)
T 3rgf_B 156 HPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD 214 (285)
T ss_dssp CSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCC
Confidence 35779999999999999999999999999887766678999999999999999988764
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.32 E-value=0.00053 Score=54.01 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl 168 (172)
.+.++|.+++..++++..+...|..+...+.....+-+.+|..+||||||+|++..+.+...
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~ 198 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWT 198 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 46789999999999999999999999998876666678999999999999999988765433
No 31
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=97.29 E-value=0.00025 Score=44.77 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
....||.|++ .+.++..+|.++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCcee
Confidence 4568999997 48899899999999999986
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=97.22 E-value=0.00029 Score=44.21 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
+...||.|++ .+.++...|.++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 4568999997 48889889999999999986
No 33
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=97.21 E-value=0.00032 Score=43.90 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
+...||.|++ .+.+|..+|.++|..||.+.
T Consensus 9 eiL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 3468999997 48899999999999999986
No 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=97.16 E-value=0.00019 Score=46.86 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..||.||. +.++++..|.+.|..||.++...
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecCC
Confidence 47999997 47999999999999999998644
No 35
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=97.14 E-value=0.00027 Score=44.49 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
...||.|++ .+.++..+|.++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 468999997 48888889999999999986
No 36
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=97.05 E-value=0.00027 Score=44.42 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
...||.|++ .+.++..+|.++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKG--PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 358999997 48889889999999999986
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.03 E-value=0.00041 Score=57.04 Aligned_cols=61 Identities=7% Similarity=0.065 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-hCcCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRT 167 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~-~~~~~~Gr~~~~~aAAclYiacR~~~~~~t 167 (172)
.++.+|.++...|+++..+...|..|...++ ...+.-+..|..|||||||+|++..+.+++
T Consensus 152 ~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p 213 (358)
T 2pk2_A 152 HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIP 213 (358)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCC
Confidence 3567899999999999999999999998876 455556799999999999999999886554
No 38
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.96 E-value=0.00043 Score=42.80 Aligned_cols=30 Identities=33% Similarity=0.801 Sum_probs=27.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+||.|+. ..++|+.++-.+.|..||.||-
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEe
Confidence 57999998 6899999999999999999995
No 39
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.90 E-value=0.0024 Score=52.23 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhC--cCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 104 GLILAFKTIATMSDRLGLVA-TIKDRANEIYKKVEDQ--KSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 104 ~l~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~a~~~--~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
.+.-|...|..+|+.|+++. .+.+.+-.+|+.+..+ .++++|-.+.+.-+|+|+.||..+...|++||
T Consensus 214 vy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~I 284 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKII 284 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 34558889999999998875 5777788888887654 57899999999999999999999999999887
No 40
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.87 E-value=0.00056 Score=41.98 Aligned_cols=30 Identities=37% Similarity=0.777 Sum_probs=27.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+||.|+. ..++|+.++-.+.|..||.+|-
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEe
Confidence 47999998 6899999999999999999995
No 41
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.87 E-value=0.0011 Score=51.84 Aligned_cols=63 Identities=6% Similarity=-0.129 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHh-hCcCCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 030755 107 LAFKTIATMSDRLGLVA-TIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~a~-~~~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ 169 (172)
.+.++|.+++..++++. .+...|..+...+. +....-+.+|..+||||||+|++..+.|....
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~ 202 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPE 202 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchH
Confidence 46789999999999986 78888888888865 43425679999999999999999776655443
No 42
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.80 E-value=0.0029 Score=52.77 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhC--cCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVA-TIKDRANEIYKKVEDQ--KSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~a~~~--~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
.-|...|+.+|++|+++. ++.+..-.+|+..+.+ .+.++|-.+.++-+|+|+.|+..+..++++||
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~I 348 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKII 348 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 448899999999999875 6777776777776654 57899999999999999999999999999987
No 43
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=96.69 E-value=0.0031 Score=49.28 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCC-CCCCcccc
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED-KPRTVKGT 171 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~-~~~tl~ei 171 (172)
....++|-+++..++|++.+.-.|..++.+.+....++......++++|+|+|++.+. .|.++.++
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l 116 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQL 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4578899999999999999999999999999888767667889999999999999655 46666654
No 44
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.63 E-value=0.00094 Score=42.95 Aligned_cols=30 Identities=20% Similarity=0.779 Sum_probs=27.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+||.|+. ..+||+.++-.+.|..||.||-
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEe
Confidence 47999998 6899999999999999999995
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=96.56 E-value=0.007 Score=53.26 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhC--cCCCCCCHHHHHHHHHHHHHHhCCCCCCcccc
Q 030755 104 GLILAFKTIATMSDRLGLV-ATIKDRANEIYKKVEDQ--KSSRGRNQDALLAACLYIACRQEDKPRTVKGT 171 (172)
Q Consensus 104 ~l~~~~~~I~~~~~~L~Lp-~~v~~~A~~i~~~a~~~--~~~~Gr~~~~~aAAclYiacR~~~~~~tl~ei 171 (172)
...-|..+|+.+|+.|.++ +.+.+..-.+|+..... .++++|..+.++-+|+|+.||..+..++++||
T Consensus 523 vy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~I 593 (656)
T 4elj_A 523 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKII 593 (656)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHH
Confidence 3455889999999999877 46777888888887655 57899999999999999999999999999887
No 46
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.51 E-value=0.0058 Score=40.69 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCC------CCHHHHHHHHHHHHHHhCCCCCC
Q 030755 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRG------RNQDALLAACLYIACRQEDKPRT 167 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~G------r~~~~~aAAclYiacR~~~~~~t 167 (172)
|+++|-+||+++ +++.|.+|+...... +..+ -+...++||++|.+||.++..+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVd 65 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVD 65 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCC
Confidence 788999999997 777777777766432 2111 12348999999999999998754
No 47
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.49 E-value=0.0011 Score=42.67 Aligned_cols=30 Identities=27% Similarity=0.681 Sum_probs=27.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+||.|+. ..+||+.++-.+.|..||.||-
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEe
Confidence 47999998 6899999999999999999995
No 48
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.34 E-value=0.004 Score=50.33 Aligned_cols=48 Identities=4% Similarity=0.059 Sum_probs=39.3
Q ss_pred cCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 030755 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPR 166 (172)
Q Consensus 119 L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~~~ 166 (172)
++.++.+...|..+...+......-+..|..|||||||+|++..+.+.
T Consensus 181 ~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~ 228 (323)
T 1jkw_A 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITM 228 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCCh
Confidence 345677888999999988766655678999999999999999887653
No 49
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.27 E-value=0.0014 Score=42.53 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=27.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+||.|+. ..+||..++-.+.|..||.||-
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCS
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEee
Confidence 47999998 6899999999999999999995
No 50
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0053 Score=36.04 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=21.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
..||.||+ ..+..+ ..+..+|..||.+.
T Consensus 20 k~CP~CG~-~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEEE-CSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEec-CCCeEECCCCCCEE
Confidence 46999998 444444 46899999999875
No 51
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=95.89 E-value=0.013 Score=45.88 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCcHHHH----HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCC
Q 030755 107 LAFKTIATMSDRLGLVATIK----DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED 163 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~----~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~ 163 (172)
.+.++|.++...++++.... ..|..+...+.....+-+.+|..+||||||+|++..+
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~ 216 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLN 216 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhC
Confidence 46789999999999997653 4566676665433334578999999999999998654
No 52
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.021 Score=45.87 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhC-c---CCCCCCHHHHHHHHHHHHHH-hCCCCCCccc
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKVEDQ-K---SSRGRNQDALLAACLYIACR-QEDKPRTVKG 170 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~-~---~~~Gr~~~~~aAAclYiacR-~~~~~~tl~e 170 (172)
....+|..|+|++.+.++|.++|+.+... + .+.+. .+..-.||||+||. .++..+||-.
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~ 68 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTE 68 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHH
Confidence 45678999999999999999999998774 2 22333 45555666999996 4445555543
No 53
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.77 E-value=0.023 Score=39.75 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
.-.||.|++. ....| ...+||.+||.--
T Consensus 27 lP~CP~C~se-ytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSE-YTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCC-CCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCCc-ceEec--CCeEECCcccccc
Confidence 3589999983 44444 5689999999866
No 54
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.55 E-value=0.014 Score=45.39 Aligned_cols=58 Identities=12% Similarity=-0.049 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCcHHH----HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC
Q 030755 107 LAFKTIATMSDRLGLVATI----KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK 164 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v----~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~ 164 (172)
.+.++|.++...++++... ...|..+..........-+.+|..+||||||+|.+..+.
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 4678999999999988643 455777776665444456789999999999999987774
No 55
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=95.45 E-value=0.016 Score=34.74 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeC--CCccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCS--ECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~--~CG~V~ 33 (172)
...||.|++ .+.++. |+++|. +||...
T Consensus 10 iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 458999997 366664 999999 999886
No 56
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=95.36 E-value=0.016 Score=45.05 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCcHHH----HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhC
Q 030755 108 AFKTIATMSDRLGLVATI----KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162 (172)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~v----~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~ 162 (172)
+.+++.++...++++... ...|..+..........-+.+|..+||||||+|.+..
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 456888899999988653 4456667666554444567899999999999999975
No 57
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.94 E-value=0.013 Score=35.07 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
+..||.||+ .-+ .....+.+.|..||+..
T Consensus 18 ~~fCPkCG~-~~~-ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGP-GVF-LAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTT-TCC-CEECSSEEECTTTCCCE
T ss_pred cccCcCCCC-cee-EeccCCEEECCCCCCEE
Confidence 467999997 333 33446799999999973
No 58
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=94.85 E-value=0.014 Score=38.91 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCceeEeCC---------------------------CCceEeCCCccee
Q 030755 1 MTDAFCSDCKKHTEVVFDHS---------------------------AGDTVCSECGLVL 33 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~---------------------------~G~~vC~~CG~V~ 33 (172)
|....||.|+.+ +..+.. +|.++|..||...
T Consensus 6 LdILaCP~cK~p--L~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQP--LSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSSC--CEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hhheECCCCCCc--ccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 345689999973 555554 7899999999986
No 59
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=94.75 E-value=0.0081 Score=34.60 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCceeEeCCCCc----------eEeCCCcc
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGD----------TVCSECGL 31 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~----------~vC~~CG~ 31 (172)
|....|+.||- ++|++.|+ .+|..||.
T Consensus 2 m~~y~C~vCGy----vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCC----EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCe----EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 55567777774 56665553 37777774
No 60
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=94.56 E-value=0.033 Score=33.29 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeEeCC------CC---ceEeCCCcceecc
Q 030755 4 AFCSDCKKHTEVVFDHS------AG---DTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~------~G---~~vC~~CG~V~~e 35 (172)
..||.||. ..+++... ++ .++|.+||....+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 47999998 56654431 23 4799999998654
No 61
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.37 E-value=0.018 Score=31.35 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=20.5
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCccee
Q 030755 5 FCSDCKKH-TEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 5 ~C~~Cg~~-~~i~~D~~~G~~vC~~CG~V~ 33 (172)
.||.|+++ +.++.+...=.+-|..||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 59999995 345554445556799999863
No 62
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=94.25 E-value=0.019 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAG 22 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G 22 (172)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 55566777774 5666655
No 63
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.19 E-value=0.067 Score=42.77 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHHHhCCC
Q 030755 108 AFKTIATMSDRLGLVAT----IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK 164 (172)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~----v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiacR~~~~ 164 (172)
++++|..+...++++.. +...|..+.........+-+.+|..+||||||+|.+..+.
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 34578888888888743 4456666666655444455789999999999999997763
No 64
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=94.08 E-value=0.017 Score=34.13 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCceeEeCCCCc
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGD 23 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~ 23 (172)
|....|+.||- ++|++.|+
T Consensus 1 m~~y~C~~CGy----vYd~~~Gd 19 (52)
T 1e8j_A 1 MDIYVCTVCGY----EYDPAKGD 19 (52)
T ss_dssp CCCEECSSSCC----CCCTTTCC
T ss_pred CCcEEeCCCCe----EEcCCcCC
Confidence 44555666664 35555543
No 65
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=93.80 E-value=0.044 Score=42.46 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
..||.||+...+.++ ..|...|-.||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 479999984456655 4688999999975
No 66
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.74 E-value=0.047 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
...||.||. .. +.-...|..-|..||.++....
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECCS
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCCc
Confidence 357999998 44 4556799999999999986443
No 67
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=93.25 E-value=0.19 Score=44.21 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhC-cC----CCCCCHHHHHHHHHHHHHHhCCCCCCccc
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKVEDQ-KS----SRGRNQDALLAACLYIACRQEDKPRTVKG 170 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~-~~----~~Gr~~~~~aAAclYiacR~~~~~~tl~e 170 (172)
....+|..|+|++.+.++|.+.|+..... +. +.| ......|+.+|.||+.+|..+||-.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~ 70 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTE 70 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHH
Confidence 56788999999999999999999999842 21 223 4457777778888888888887744
No 68
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=93.10 E-value=0.051 Score=34.31 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..||.||. .. +.-...|...|..||.++.-.
T Consensus 28 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 28 YKCPVCGF-PK-LKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred ccCCCCCC-ce-eEEEEeEEEECCCCCcEEECC
Confidence 57999997 44 445578999999999998644
No 69
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=93.10 E-value=0.062 Score=35.40 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
...||.||. .. +.-...|..-|..||.++..
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 36 KYFCEFCGK-FA-VKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp CBCCTTTCS-SC-BEEEETTEEECSSSCCEEEC
T ss_pred cccCcccCC-Ce-eEecCcceEEcCCCCCEEeC
Confidence 357999998 44 45567999999999999853
No 70
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=93.07 E-value=0.05 Score=37.30 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..||.||. .. +.-...|...|..||.++.-.
T Consensus 61 ytCPfCGk-~~-vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 61 HACPNCGE-DR-VDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp EECSSSCC-EE-EEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC-ce-eEecCceeEECCCCCCEEECC
Confidence 47999997 44 445578999999999998644
No 71
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=93.04 E-value=0.089 Score=35.95 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCceeEeCCCC----ceEeCCCcceec
Q 030755 2 TDAFCSDCKKHTEVVFDHSAG----DTVCSECGLVLE 34 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G----~~vC~~CG~V~~ 34 (172)
.+..||+||+- +......| .++|..||++..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 35789999973 44333322 699999999864
No 72
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=92.97 E-value=0.037 Score=34.71 Aligned_cols=27 Identities=22% Similarity=0.808 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc-ee
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL-VL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~-V~ 33 (172)
..|++||.. +..+ ....+.|..||. ||
T Consensus 29 Y~C~~CG~~--~e~~-~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSK--LSLS-RTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCE--ECCC-TTSTTCCSSSCCCCC
T ss_pred EECCCCCCc--ceeC-CCCCccCCCCCceEe
Confidence 479999973 2222 355678999998 66
No 73
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.88 E-value=0.06 Score=37.35 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCceeEe--CCCCceEeCCCcceec
Q 030755 1 MTDAFCSDCKKHTEVVFD--HSAGDTVCSECGLVLE 34 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D--~~~G~~vC~~CG~V~~ 34 (172)
|.+..||+||+--.+..| ...+.++|..||....
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 456799999972122233 3356899999999764
No 74
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=92.80 E-value=0.07 Score=35.13 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
...||.||. .. +.-...|...|..||.++..
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 36 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCCSSSCS-SC-CEEEETTEEECTTTCCEEEC
T ss_pred CCcCCCCCC-ce-eeecccceEEcCCCCCEEeC
Confidence 357999998 44 45567999999999999853
No 75
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=92.80 E-value=0.057 Score=33.96 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
...||.||. .. +.-...|..-|..||.++...
T Consensus 26 ky~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCC-ce-eEecCCCeEECCCCCCEEeCC
Confidence 357999998 44 455689999999999998644
No 76
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=92.56 E-value=0.075 Score=35.63 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..||.||. .. +.-...|...|..||.++.
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEE
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEe
Confidence 47999998 44 5556899999999999985
No 77
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=91.88 E-value=0.09 Score=28.39 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
-.+|+.||.. -.+.....|.++| ||.=
T Consensus 6 fY~C~~CGni-vev~~~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 6 VYKCELCGQV-VKVLEEGGGTLVC--CGED 32 (36)
T ss_dssp EEECTTTCCE-EEEEECCSSCEEE--TTEE
T ss_pred EEEcCCCCcE-EEEEeCCCcCEEe--CCcc
Confidence 3578888852 2223346677777 6643
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=91.54 E-value=0.06 Score=32.08 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAG 22 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G 22 (172)
|....|+.||- ++|++.|
T Consensus 1 m~~y~C~~CGy----vYd~~~G 18 (55)
T 2v3b_B 1 MRKWQCVVCGF----IYDEALG 18 (55)
T ss_dssp CCEEEETTTCC----EEETTTC
T ss_pred CCcEEeCCCCe----EECCCcC
Confidence 34445555553 3555443
No 79
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=90.77 E-value=0.089 Score=32.92 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 030755 4 AFCSDCKK 11 (172)
Q Consensus 4 ~~C~~Cg~ 11 (172)
..|+.||-
T Consensus 8 y~C~vCGy 15 (70)
T 1dx8_A 8 YECEACGY 15 (70)
T ss_dssp EEETTTCC
T ss_pred EEeCCCCE
Confidence 45555553
No 80
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=90.63 E-value=0.3 Score=28.35 Aligned_cols=29 Identities=31% Similarity=0.641 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCceeEeC---------CCCceEeCCCcce
Q 030755 3 DAFCSDCKKHTEVVFDH---------SAGDTVCSECGLV 32 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~---------~~G~~vC~~CG~V 32 (172)
...||.||.. +.++-. .+=.++|.+||..
T Consensus 9 ~~~Cp~Cg~~-~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKK-NCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSS-CEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCC-EEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 3589999984 443321 1224799999964
No 81
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=90.29 E-value=0.18 Score=31.60 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..|| ||.. .+.+...-..-|. ||.++.
T Consensus 5 v~C~-C~~~--~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRA--LYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCC--EEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCCE--EEEcCCCcEEECC-CCCeee
Confidence 3699 9983 6777788889999 999995
No 82
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.25 E-value=0.44 Score=37.44 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCcHH-----------HHHHHHHHHHHHh-hCcCCCCCCHHHHHHHHHHHHH
Q 030755 107 LAFKTIATMSDRLGLVAT-----------IKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIAC 159 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~-----------v~~~A~~i~~~a~-~~~~~~Gr~~~~~aAAclYiac 159 (172)
.+.++|.++...+++++. ....+..+..... +.. +-+.+|..+||||||+|+
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~-~l~~~PS~iAaAai~la~ 213 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAASALYHFS 213 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGG-GGGSCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhh-hhcCCHHHHHHHHHHHHH
Confidence 456788899888876532 1233555665554 334 457999999999999986
No 83
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=90.24 E-value=0.091 Score=33.82 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=12.4
Q ss_pred CCceEeCCCcceeccc
Q 030755 21 AGDTVCSECGLVLESH 36 (172)
Q Consensus 21 ~G~~vC~~CG~V~~e~ 36 (172)
....+|..||.|.++.
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 4578999999998754
No 84
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.17 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCceeEeCC----CCceEeCCCccee
Q 030755 3 DAFCSDCKKHTEVVFDHS----AGDTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~----~G~~vC~~CG~V~ 33 (172)
+..||+||+ - +..... ...++|..||++.
T Consensus 24 ~~FCPeCgN-m-L~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN-M-LYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC-B-CBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC-E-eeECccCCCceeEEECCCCCCcE
Confidence 468999997 2 322221 2369999999975
No 85
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=88.49 E-value=0.26 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=23.5
Q ss_pred CCCCCCCCCC--ceeEeC--CCCceEeCCCcceecc
Q 030755 4 AFCSDCKKHT--EVVFDH--SAGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~--~i~~D~--~~G~~vC~~CG~V~~e 35 (172)
..||.|+... .+..|- ..|.+.|..||.-.+-
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 4799999853 334443 4789999999988753
No 86
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=87.92 E-value=0.14 Score=29.36 Aligned_cols=32 Identities=22% Similarity=0.644 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCceeE-eCCCCceEeCCCcceec
Q 030755 3 DAFCSDCKKHTEVVF-DHSAGDTVCSECGLVLE 34 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~-D~~~G~~vC~~CG~V~~ 34 (172)
...|.+|+......+ ....|..+|..||+-..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 36 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHK 36 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHH
Confidence 457999997432222 23578889999998643
No 87
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.75 E-value=0.2 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
..||.|++ . ...|-..|..||..
T Consensus 15 ~iCpkC~a-~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGA-T-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCC-E-----ECTTCSSCSSSSSC
T ss_pred ccCCCCCC-c-----CCCCceecCCCCCc
Confidence 47999998 2 35899999999987
No 88
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=87.63 E-value=0.14 Score=33.42 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=12.7
Q ss_pred CCceEeCCCcceeccc
Q 030755 21 AGDTVCSECGLVLESH 36 (172)
Q Consensus 21 ~G~~vC~~CG~V~~e~ 36 (172)
....+|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 5578999999998754
No 89
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=87.07 E-value=0.22 Score=30.16 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+.+||.||. ..+ ..+|..||....
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 3568999996 322 667999998864
No 90
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=86.13 E-value=0.49 Score=34.71 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
.||.|.+. +.+...|...|..||..
T Consensus 44 ACp~CnKK---V~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS---VLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC---EEEETTTEEEETTTTEE
T ss_pred hchhhCCE---eeeCCCCeEECCCCCCC
Confidence 59999973 45678999999999998
No 91
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=85.35 E-value=0.27 Score=27.66 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=20.9
Q ss_pred CCCCCCCCCCce-eEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
..|.+|+..... -.....|..+|..||+-..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 33 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 33 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHH
Confidence 368999974322 2334578899999997653
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=84.93 E-value=0.69 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.731 Sum_probs=20.3
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
+||.|+. .++.++..-.+.|..||..+
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 6999986 25556566678999999876
No 93
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=84.16 E-value=0.52 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCCCCCCCCceeEeC------CCC---------ceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDH------SAG---------DTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~------~~G---------~~vC~~CG~V~ 33 (172)
++||.||. ..++.+. -.| -.+|..||.++
T Consensus 3 m~Cp~Cg~-~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCC-CeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 57999996 3343221 122 35799999877
No 94
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.70 E-value=0.63 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=17.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
..|..||...+ .+ ....+-|..||.=|
T Consensus 22 Y~C~~Cg~~~~--l~-~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNT--IQ-AKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCC--CC-SSSCCCCSSSCCCC
T ss_pred EECCCCCCeee--cC-CCCceECCCCCcEE
Confidence 57888887322 22 34668888888644
No 95
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=83.52 E-value=1.4 Score=30.23 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCCCCCCCCCceeEeC--------CCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDH--------SAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~--------~~G~~vC~~CG~V~~e~ 36 (172)
..||.||....+.+.. .+=.++|.+||..-.++
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 5799999843333321 22348999999875543
No 96
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=83.52 E-value=0.55 Score=32.18 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCceeE-------eC------CC--CceEeCCCcceecc
Q 030755 3 DAFCSDCKKHTEVVF-------DH------SA--GDTVCSECGLVLES 35 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~-------D~------~~--G~~vC~~CG~V~~e 35 (172)
.+.||.||.. .++. +. -. -..+|..||.++-+
T Consensus 2 ~M~Cp~Cg~~-~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 2 HMKCPVCHQG-EMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CCBCTTTSSS-BEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CcCCCcCCCC-ceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 3579999973 2221 11 12 26789999998853
No 97
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=83.29 E-value=0.61 Score=32.29 Aligned_cols=36 Identities=31% Similarity=0.659 Sum_probs=28.9
Q ss_pred ceeEeC-CCCceEeCCCccee--cccccccCcccccccC
Q 030755 14 EVVFDH-SAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 14 ~i~~D~-~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
++..|. +.|.++|..||.-| .+.-+|++.-|.+|.+
T Consensus 10 e~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 48 (124)
T 2kv1_A 10 EVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTE 48 (124)
T ss_dssp CSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSC
T ss_pred ccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeec
Confidence 333343 68999999999998 5667899999999974
No 98
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=82.31 E-value=0.58 Score=27.35 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=7.3
Q ss_pred eEeCCCcceecc
Q 030755 24 TVCSECGLVLES 35 (172)
Q Consensus 24 ~vC~~CG~V~~e 35 (172)
.+|+.||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666654
No 99
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=82.14 E-value=1.1 Score=30.99 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
.+.|.++|..||.-| .+.-+|++.-|.+|.+
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~ 48 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTE 48 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCc
Confidence 368999999999998 5567899999999985
No 100
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=81.78 E-value=0.68 Score=31.14 Aligned_cols=30 Identities=30% Similarity=0.718 Sum_probs=26.3
Q ss_pred CCCceEeCCCccee--cccccccCcccccccC
Q 030755 20 SAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 20 ~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 10 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 41 (105)
T 3mao_A 10 EPGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 41 (105)
T ss_dssp CSEEEEETTTCCEEEEGGGEECCSSSSCEESC
T ss_pred CCEEEEcCCCCCccccCCcccCCCCCChhhcc
Confidence 68999999999998 5567899999999985
No 101
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=81.75 E-value=0.38 Score=29.63 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=21.0
Q ss_pred CCCCCCCCCCce-eEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
..|.+||..... -....+|.++|..||+-..
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 579999974222 2223478899999998775
No 102
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=80.19 E-value=0.35 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=14.7
Q ss_pred CCCCCCCCCCceeEeC---CCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDH---SAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~---~~G~~vC~~CG~V~ 33 (172)
..|.+|+......+.. ..| ++|..||+-.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 4566666532223332 334 6666666655
No 103
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=79.77 E-value=1.1 Score=31.85 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 65 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 65 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSS
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhch
Confidence 468999999999988 5567899999999975
No 104
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.65 E-value=0.88 Score=32.85 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=20.8
Q ss_pred CCCCCCCCC-CceeEeCCC--CceEeCCCccee
Q 030755 4 AFCSDCKKH-TEVVFDHSA--GDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~-~~i~~D~~~--G~~vC~~CG~V~ 33 (172)
..|+.|+++ +.++.|.+. =.+.|..||..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 469999995 455554333 457799999874
No 105
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.58 E-value=1.1 Score=31.99 Aligned_cols=31 Identities=29% Similarity=0.616 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
...|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 89 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYD 89 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCc
Confidence 468999999999988 5567899999999985
No 106
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=78.94 E-value=0.36 Score=29.48 Aligned_cols=31 Identities=32% Similarity=0.906 Sum_probs=19.5
Q ss_pred CCCCCCCCCCceeEe-CCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFD-HSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D-~~~G~~vC~~CG~V~~ 34 (172)
..|.+|+......+. ...|.++|..||+-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 468888864222222 3467788888887765
No 107
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=78.86 E-value=0.67 Score=33.89 Aligned_cols=29 Identities=21% Similarity=0.626 Sum_probs=20.2
Q ss_pred CCCCCCCC-CceeEeC--CCCceEeCCCccee
Q 030755 5 FCSDCKKH-TEVVFDH--SAGDTVCSECGLVL 33 (172)
Q Consensus 5 ~C~~Cg~~-~~i~~D~--~~G~~vC~~CG~V~ 33 (172)
.|+.|+++ +.++.|. ..=.+.|..||..-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 69999995 3555542 33456799999864
No 108
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=78.56 E-value=1 Score=32.60 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=26.5
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~ 101 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFK 101 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESS
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCc
Confidence 368999999999988 5567899999999985
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=78.21 E-value=1.4 Score=29.18 Aligned_cols=29 Identities=31% Similarity=0.770 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
|+ ..||.|+. .+.++ .|...|..|+.-+.
T Consensus 31 M~-~~CP~Cq~--eL~~~--g~~~hC~~C~~~f~ 59 (101)
T 2jne_A 31 ME-LHCPQCQH--VLDQD--NGHARCRSCGEFIE 59 (101)
T ss_dssp CC-CBCSSSCS--BEEEE--TTEEEETTTCCEEE
T ss_pred cc-ccCccCCC--cceec--CCEEECccccchhh
Confidence 44 78999997 35554 55666999987653
No 110
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=77.87 E-value=1.9 Score=33.58 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
...||.||+. .......-..+|..||.+.-.
T Consensus 107 ~~fC~~CG~~--~~~~~~~~~~~C~~C~~~~yp 137 (269)
T 1vk6_A 107 HKYCGYCGHE--MYPSKTEWAMLCSHCRERYYP 137 (269)
T ss_dssp TSBCTTTCCB--EEECSSSSCEEESSSSCEECC
T ss_pred CCccccCCCc--CccCCCceeeeCCCCCCEecC
Confidence 4689999984 333445667899999987643
No 111
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=77.85 E-value=0.71 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+.+|+.||. -.+ ..+|..||....
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKTK 28 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBCE
T ss_pred cceECCCCCC-EEc-------cccCcCCCCccC
Confidence 3578999996 222 567999997764
No 112
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=77.72 E-value=2.3 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeEeCCCC-----------ceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDHSAG-----------DTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G-----------~~vC~~CG~V~ 33 (172)
.+||+||....+.+=.-++ -.+|..||.-+
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 5788888754443321222 46788888777
No 113
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=77.58 E-value=1.4 Score=32.31 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=21.6
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCcceec
Q 030755 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 5 ~C~~--Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.||. |++. +.+...|...|..|+....
T Consensus 45 aC~~~~CnKK---v~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKK---VIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCB---CEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCc---cccCCCCeEECCCCCCcCC
Confidence 6999 9973 4566789999999997764
No 114
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=77.41 E-value=1.5 Score=35.00 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=19.5
Q ss_pred CCCCCCCCCCC--ceeEe--CCCC--ceEeCCCccee
Q 030755 3 DAFCSDCKKHT--EVVFD--HSAG--DTVCSECGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~--~i~~D--~~~G--~~vC~~CG~V~ 33 (172)
...||.||+.. .++.. ..+| .+.|.-||+-=
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 46899999863 22331 1356 58998888643
No 115
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=77.39 E-value=1.2 Score=31.58 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
...|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 70 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTK 70 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCc
Confidence 468999999999998 5567899999999984
No 116
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=77.17 E-value=0.98 Score=30.78 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.5
Q ss_pred ceeEeCCCCceEeCCCcceec
Q 030755 14 EVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 14 ~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+......+...|.+||...+
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CEEEEEECCEEECSSSSCEEC
T ss_pred EEEEEeccceEEcCCCCCEEe
Confidence 455566678888888888875
No 117
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=76.69 E-value=1.2 Score=31.73 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
...|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 468999999999998 5567899999999984
No 118
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=76.59 E-value=1.3 Score=31.85 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
.+.|.++|..||.-| .+.-+|+|--|.+|.+
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 468999999999998 5667899999999974
No 119
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=76.36 E-value=1.3 Score=30.76 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+|+.||.. -.+.....|.++| ||.-++
T Consensus 8 YkC~~CGni-vev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 8 YKCEVCGNI-VEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EECTTTCCE-EEEEECCSSCEEE--TTEECE
T ss_pred EEcCCCCeE-EEEEcCCCcceec--CCcccc
Confidence 479999962 2233567788888 887664
No 120
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.17 E-value=1.9 Score=27.54 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
|+ ..||.|+.+ +..+ .+...|..|+.-+.
T Consensus 1 M~-~~CP~C~~~--l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHHA--LERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCSC--CEEC--SSEEECTTTCCEEE
T ss_pred CC-CCCCCCCCc--cccC--CCceECccccccCC
Confidence 56 789999973 4444 45566888887664
No 121
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=75.26 E-value=1.3 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=18.8
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCCcce
Q 030755 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 3 ~~~C~~Cg~~~----~i~~D~~~G~~vC~~CG~V 32 (172)
+..|..||... .+|.- .|..||.+|=..
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI~~ 49 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG--PSVYICDECVDL 49 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCC--CCCChhHHHHHH
Confidence 46899999742 33433 478899998443
No 122
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=73.95 E-value=1.7 Score=35.40 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=12.2
Q ss_pred eEeCCCcceecccccc
Q 030755 24 TVCSECGLVLESHSID 39 (172)
Q Consensus 24 ~vC~~CG~V~~e~~i~ 39 (172)
..|.+||.|.-+...+
T Consensus 54 ~~C~~Cg~v~~~~~~~ 69 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVP 69 (416)
T ss_dssp EEETTTCCEEESSCCC
T ss_pred EECCCCCceeecCcCC
Confidence 4699999998766543
No 123
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=73.71 E-value=1.5 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.675 Sum_probs=15.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..||+||.. ..---+|.+||.-=+
T Consensus 31 ~~c~~cG~~-------~~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGK-------KLSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCE-------ECTTBCCTTTCBSSS
T ss_pred eECCCCCCE-------eCCceEcCCCCcCCC
Confidence 468888862 234678888886533
No 124
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=73.57 E-value=2.9 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=22.3
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCcc
Q 030755 5 FCSDCKKH-TEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~-~~i~~D~~~G~~vC~~CG~ 31 (172)
.||.|+.. +++.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 69999863 3788888899999999993
No 125
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=73.04 E-value=2.6 Score=32.05 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=22.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
..|-.||.+....+++..|..+|..|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 4799999754457888999999999964
No 126
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=72.96 E-value=0.77 Score=31.89 Aligned_cols=17 Identities=35% Similarity=0.817 Sum_probs=14.2
Q ss_pred EeCCCCceEeCCCccee
Q 030755 17 FDHSAGDTVCSECGLVL 33 (172)
Q Consensus 17 ~D~~~G~~vC~~CG~V~ 33 (172)
++-.+|.++|.+||.+.
T Consensus 93 ~~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 93 IDVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEEETTTCCEE
T ss_pred eEEEEEEEECCCCCCEe
Confidence 34458999999999987
No 127
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=72.88 E-value=2.9 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCceeEeC---CCCceEeCCCc
Q 030755 3 DAFCSDCKKHTEVVFDH---SAGDTVCSECG 30 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~---~~G~~vC~~CG 30 (172)
...||.||.. ..+..+ ..-..+|..||
T Consensus 3 ~~~C~~CG~~-~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGE-VILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCB-CEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCc-cccccccCCCCcceECCCCC
Confidence 3589999984 323322 12256999999
No 128
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=72.45 E-value=1.7 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=16.9
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCCc
Q 030755 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECG 30 (172)
Q Consensus 3 ~~~C~~Cg~~~----~i~~D~~~G~~vC~~CG 30 (172)
+.+|..||... .++.- .|..+|.+|=
T Consensus 11 ~~~CSFCGk~~~ev~~LIaG--pgv~IC~eCi 40 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAG--PSVYICDECV 40 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEEC--SSCEEEHHHH
T ss_pred CcEecCCCCCHHHhcccCCC--CCCEehHHHH
Confidence 45899999742 33332 4678998873
No 129
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=72.04 E-value=2.1 Score=33.02 Aligned_cols=29 Identities=17% Similarity=0.646 Sum_probs=19.0
Q ss_pred CCCCCCCCCCce---eEeCCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEV---VFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i---~~D~~~G~~vC~~CG~V~ 33 (172)
..||+||+. .+ .-+.--.+..|.+|+.-.
T Consensus 35 ~yCPnCG~~-~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNN-PLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCS-SCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCCh-hhhhccCCCcccccccCCcchhh
Confidence 579999983 23 222345778999998765
No 130
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=71.76 E-value=2.5 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.625 Sum_probs=22.0
Q ss_pred CCCCCCC--CCCCCceeEeCCCCceEeC-----CCccee
Q 030755 2 TDAFCSD--CKKHTEVVFDHSAGDTVCS-----ECGLVL 33 (172)
Q Consensus 2 ~~~~C~~--Cg~~~~i~~D~~~G~~vC~-----~CG~V~ 33 (172)
...+||. |+. .++.++....+.|. .||..+
T Consensus 24 ~~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 3468998 886 35556667778997 899876
No 131
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=71.10 E-value=1.4 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.780 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
|....|.+|+. +.+.+ .|.+||.
T Consensus 21 m~~rAC~~C~~----v~~~d----~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHY----ITSED----RCPVCGS 43 (81)
T ss_dssp -CCEEETTTCB----EESSS----SCTTTCC
T ss_pred hhHHHHhhCCC----ccCCC----CCCCCCC
Confidence 44556777775 22221 3777776
No 132
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=70.61 E-value=1.4 Score=26.55 Aligned_cols=23 Identities=39% Similarity=0.873 Sum_probs=14.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
..||+||.. ..---||.+||+-=
T Consensus 31 ~~c~~cGe~-------~~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 31 VPCPECKAM-------KPPHTVCPECGYYA 53 (60)
T ss_dssp EECTTTCCE-------ECTTSCCTTTCEET
T ss_pred eECCCCCCe-------ecceEEcCCCCcCC
Confidence 468888862 12356788888543
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.60 E-value=3.9 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 2 ~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
+...|..|+.. |..-.-.--|..||.|+=..
T Consensus 10 ~~~~C~~C~~~----F~~~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 10 DSDACMICSKK----FSLLNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp CCSBCTTTCCB----CBTTBCCEECTTTCCEECGG
T ss_pred cCCcccCCCCc----cCCccccccCCCCCEEEccc
Confidence 34579999973 44556788899999998433
No 134
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.28 E-value=4 Score=33.94 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCcceec
Q 030755 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 5 ~C~~--Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.||. |++. +.+...|...|..||...+
T Consensus 310 aC~~~~C~kk---v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 310 ACASEGCNKK---VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp ECCSTTCCCB---EEECTTSCEEETTTTEEES
T ss_pred cCCcccCCCc---cccCCCccEECCCCCCcCc
Confidence 5999 9973 4556789999999998864
No 135
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=65.58 E-value=1.7 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCCCCCCCCC-ceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHT-EVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~-~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..|.+||... ..-.-..+|.++|..||+...
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 5799999742 222224578999999999764
No 136
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=65.24 E-value=1.7 Score=30.59 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.4
Q ss_pred ceeEeCCCCceEeCCCcceec
Q 030755 14 EVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 14 ~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.+..+...+...|.+||...+
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEE
T ss_pred EEEEEecCCcEECCCCCCEEe
Confidence 566667789999999999975
No 137
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=64.59 E-value=5.6 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.623 Sum_probs=19.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
.+|-.||. ++ ..+| +.|.+||++.=.
T Consensus 23 t~C~~C~~---~i--~kqg-~kC~~C~~~cH~ 48 (59)
T 1rfh_A 23 GWCDLCGR---EV--LRQA-LRCANCKFTCHS 48 (59)
T ss_dssp EECTTTCS---EE--CSCC-EECTTTSCEECH
T ss_pred eEchhcch---hh--hhCc-cEeCCCCCeEeh
Confidence 57999996 33 4555 679999998743
No 138
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=64.52 E-value=2.6 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..|++|+.... ......++|..||.|..
T Consensus 11 ~~Cw~C~~~~~---~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGPWG---PGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCBCC---SSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCcc---cccccccccccccccCC
Confidence 57999997311 12457899999998874
No 139
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=63.58 E-value=3.2 Score=26.34 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q 030755 1 MTDAFCSDCKKH 12 (172)
Q Consensus 1 ~~~~~C~~Cg~~ 12 (172)
|....||.||..
T Consensus 28 ~~k~FCp~CGn~ 39 (79)
T 2con_A 28 MNRVFCGHCGNK 39 (79)
T ss_dssp SSCCSCSSSCCS
T ss_pred cccccccccCcc
Confidence 556788888873
No 140
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=63.13 E-value=2.9 Score=28.53 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..||+|+..+.+-.........|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 469999984333333455667899999877443
No 141
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=62.42 E-value=3.4 Score=21.37 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.2
Q ss_pred CCCceEeCCCcce
Q 030755 20 SAGDTVCSECGLV 32 (172)
Q Consensus 20 ~~G~~vC~~CG~V 32 (172)
..|+..|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 4588888888876
No 142
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=61.63 E-value=5.2 Score=28.83 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
..||.|++ .++++. +.++|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 47999994 588874 999998 555
No 143
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=61.40 E-value=2.9 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.755 Sum_probs=17.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
..||-||. ..+- --...|..||+
T Consensus 17 ~lCrRCG~-~sfH----~qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGS-KAYH----LQKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCS-SCEE----TTSCCBTTTCT
T ss_pred CcCCCCCC-ccCc----CccccCcccCC
Confidence 36999998 4442 23679999998
No 144
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=59.04 E-value=1.9 Score=30.45 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.1
Q ss_pred eEeCCCCceEeCCCccee
Q 030755 16 VFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 16 ~~D~~~G~~vC~~CG~V~ 33 (172)
.+|..+|.++|..||...
T Consensus 102 e~~v~eg~L~C~~cg~~Y 119 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIY 119 (141)
T ss_dssp TEEEEEEEEECTTTCCEE
T ss_pred heeccCCEEECCCCCCcc
Confidence 356678999999999986
No 145
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=59.03 E-value=4.6 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCCceEeCCCccee--cccccccCcccccccC
Q 030755 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~i~~~~ewr~f~~ 49 (172)
...|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~ 237 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSR 237 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESS
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCc
Confidence 368999999999998 5567899999999985
No 146
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.35 E-value=7.4 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 469999973 44556678899999998544
No 147
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.80 E-value=4 Score=28.08 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=11.3
Q ss_pred CceEeCCCcceec
Q 030755 22 GDTVCSECGLVLE 34 (172)
Q Consensus 22 G~~vC~~CG~V~~ 34 (172)
.-++|..||.|++
T Consensus 90 ~HliC~~Cg~v~~ 102 (136)
T 1mzb_A 90 DHMVCVDTGEVIE 102 (136)
T ss_dssp EEEEETTTCCEEE
T ss_pred eEEEECCCCCEEE
Confidence 3589999999986
No 148
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=56.23 E-value=6 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.754 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..|..|+.. ++ .| +.|.+|+...=
T Consensus 15 t~C~~C~k~---i~---~G-~kC~~Ck~~cH 38 (49)
T 1kbe_A 15 QVCNVCQKS---MI---FG-VKCKHCRLKCH 38 (49)
T ss_dssp CCCSSSCCS---SC---CE-EEETTTTEEES
T ss_pred cCccccCce---eE---Cc-CCCCCCCCccc
Confidence 689999972 34 56 88999998763
No 149
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=55.59 E-value=8.4 Score=25.82 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
..|..|+.. .+..+|..||.|-=
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYC 47 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEE
T ss_pred CcCccccCC--------CCeeeeeecCcccc
Confidence 468999873 24678999999974
No 150
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=55.53 E-value=29 Score=26.48 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHH
Q 030755 107 LAFKTIATMSDRLGLVAT----IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~----v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYiac 159 (172)
.+..++..+...++++.. +...|..+...+.-.-.+-.-+|..+||||+..+.
T Consensus 148 Tp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 148 LSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 204 (252)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh
Confidence 367788899899888864 34455555555433222235788999999965544
No 151
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=55.25 E-value=4.8 Score=20.92 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=9.9
Q ss_pred CCCceEeCCCcce
Q 030755 20 SAGDTVCSECGLV 32 (172)
Q Consensus 20 ~~G~~vC~~CG~V 32 (172)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4678888888766
No 152
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.01 E-value=4.7 Score=28.07 Aligned_cols=12 Identities=25% Similarity=1.118 Sum_probs=10.9
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
-++|..||.|++
T Consensus 93 HliC~~Cg~v~~ 104 (145)
T 2fe3_A 93 HAICENCGKIVD 104 (145)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEEE
Confidence 589999999986
No 153
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=52.62 E-value=6.8 Score=24.02 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=15.8
Q ss_pred ceeEeC--CCCceEeCCCcceec
Q 030755 14 EVVFDH--SAGDTVCSECGLVLE 34 (172)
Q Consensus 14 ~i~~D~--~~G~~vC~~CG~V~~ 34 (172)
.+..+- ..|...|.-||....
T Consensus 29 rVyl~ld~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 29 RVWLQIPEDTGWVECPYCDCKYV 51 (67)
T ss_dssp EEEEECCTTTSEEEETTTTEEEE
T ss_pred EEEEEccCCCCeEECCCCCCEEE
Confidence 344444 579999999999874
No 154
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=52.36 E-value=12 Score=22.92 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
-.+|-.|+. ++ ..+| +.|.+||+++=..-
T Consensus 35 pt~C~~C~~---~l--~~qG-~kC~~C~~~cHkkC 63 (72)
T 2fnf_X 35 PGWCDLCGR---EV--LRQA-LRCANCKFTCHSEC 63 (72)
T ss_dssp CCBCTTTSS---BC--SSCC-EECTTSSCEECTGG
T ss_pred CcchhhhhH---HH--HhCc-CccCCCCCeechhh
Confidence 357999997 23 4455 67999999985443
No 155
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=52.32 E-value=3.7 Score=25.35 Aligned_cols=19 Identities=26% Similarity=0.899 Sum_probs=12.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG 30 (172)
..|.+|.. ++ ....|.+||
T Consensus 12 ~AC~~C~~---~~-----~~~~CPnC~ 30 (69)
T 1ryq_A 12 KACRHCHY---IT-----SEDRCPVCG 30 (69)
T ss_dssp EEETTTCB---EE-----SSSSCTTTC
T ss_pred hhHHhCCc---cc-----cCCcCCCcc
Confidence 46778875 33 345688888
No 156
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.92 E-value=5.8 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCC--Cccee
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSE--CGLVL 33 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~--CG~V~ 33 (172)
...||.|+.. |..+..=..+.|.. ||.-.
T Consensus 6 ~k~CP~C~~~--Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 6 TKECPKCHVT--IEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCTTTCCC--CSSCCSCCSSSCCSSGGGSCC
T ss_pred ceECcCCCCe--eEeCCCCCcEEECCCCcCCEE
Confidence 3689999973 56666666777877 77554
No 157
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.82 E-value=11 Score=23.83 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEECTG
T ss_pred CCCcCcCCc----cccchhcccccCCCcEEChH
Confidence 469999973 44556678899999988543
No 158
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.56 E-value=14 Score=23.30 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 15 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSAT----FSVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCC----CCSSSCCEECSSSCCEECTT
T ss_pred CcCcCcCCc----cccchhhhhhcCCCcEEChh
Confidence 479999973 34445567788888887433
No 159
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.52 E-value=5.4 Score=27.97 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=11.4
Q ss_pred CceEeCCCcceec
Q 030755 22 GDTVCSECGLVLE 34 (172)
Q Consensus 22 G~~vC~~CG~V~~ 34 (172)
.-++|..||.|++
T Consensus 98 ~HliC~~Cg~v~~ 110 (150)
T 2xig_A 98 DHIICLHCGKIIE 110 (150)
T ss_dssp EEEEETTTCCEEE
T ss_pred eEEEECCCCCEEE
Confidence 4689999999986
No 160
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=51.44 E-value=10 Score=31.07 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCcc
Q 030755 5 FCSDCKKH-TEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~-~~i~~D~~~G~~vC~~CG~ 31 (172)
.||.|+.. +++.+++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 59999853 3688889999999999993
No 161
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=51.30 E-value=4.9 Score=23.06 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.9
Q ss_pred ceeEeCCCCceEeCCCcceec
Q 030755 14 EVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 14 ~i~~D~~~G~~vC~~CG~V~~ 34 (172)
++..|...+..+|..||..+.
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~ 29 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAP 29 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEE
T ss_pred cccccccCCCCcChhccCccc
Confidence 444565677788999999886
No 162
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.19 E-value=5.6 Score=27.92 Aligned_cols=13 Identities=46% Similarity=1.020 Sum_probs=11.3
Q ss_pred CceEeCCCcceec
Q 030755 22 GDTVCSECGLVLE 34 (172)
Q Consensus 22 G~~vC~~CG~V~~ 34 (172)
.-++|..||.|++
T Consensus 89 ~HliC~~Cg~v~~ 101 (150)
T 2w57_A 89 DHLVCLDCGEVIE 101 (150)
T ss_dssp EEEEETTTCCEEE
T ss_pred eEEEECCCCCEEE
Confidence 3589999999986
No 163
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.07 E-value=5.7 Score=27.70 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=11.2
Q ss_pred CceEeCCCcceec
Q 030755 22 GDTVCSECGLVLE 34 (172)
Q Consensus 22 G~~vC~~CG~V~~ 34 (172)
.-++|..||.|++
T Consensus 89 ~HliC~~Cg~v~~ 101 (145)
T 3eyy_A 89 IHLVCRDCTNVIE 101 (145)
T ss_dssp EEEEESSSSCEEE
T ss_pred eEEEECCCCCEEE
Confidence 3599999999985
No 164
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=50.99 E-value=12 Score=27.72 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=19.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
..||.||. .-+.-.. ..-..|..||+..
T Consensus 114 ~~Cp~Cg~-g~fma~h-~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKH-YDRHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCS-SCEEEEC-SSCEEETTTCCCB
T ss_pred ccCCccCC-CccccCc-cCCCccCCceeEE
Confidence 36999996 4344443 3466999999886
No 165
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=50.91 E-value=8.4 Score=21.88 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 1 ~~~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
|....|-.||..-+...=..-=.+-|..||.=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 445677778763110000123456677777643
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.59 E-value=11 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.683 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
...|+.|+.. |..-.-.--|..||.|+=..
T Consensus 161 ~~~C~~C~~~----F~~~~rrhhCr~CG~v~C~~ 190 (220)
T 1dvp_A 161 GRVCHRCRVE----FTFTNRKHHCRNCGQVFCGQ 190 (220)
T ss_dssp CSBCTTTCCB----CCSSSCCEECTTTCCEECST
T ss_pred CCccCCCCCc----cCCcccccccCCcCCEEChH
Confidence 3579999973 44456778899999998544
No 167
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.37 E-value=9.6 Score=26.06 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~~ 98 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCAE 98 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEEChH
Confidence 469999973 44456678899999988543
No 168
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.07 E-value=6 Score=27.37 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=10.8
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
-++|..||.|++
T Consensus 87 HliC~~Cg~v~~ 98 (139)
T 3mwm_A 87 HLVCRACGKAVE 98 (139)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEee
Confidence 499999999986
No 169
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.85 E-value=11 Score=24.25 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=21.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+.. |..-.-.-.|..||.|+=..
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCc
Confidence 469999973 34456678899999998544
No 170
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=49.66 E-value=28 Score=18.49 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHH
Q 030755 106 ILAFKTIATMSDRLGLVA-TIKDRANEIYKK 135 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~ 135 (172)
.+..+.|+.++...|++. .++..|.+.|-.
T Consensus 11 ~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 11 ESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356778999999999984 678888876643
No 171
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=49.27 E-value=7.3 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~~PP---r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEeCCCCc---EEcCc---hhhCcCCCCC
Confidence 57999997 23433 4579999863
No 172
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=49.20 E-value=50 Score=21.22 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHH
Q 030755 101 PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYI 157 (172)
Q Consensus 101 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYi 157 (172)
.+..++++...++++.+--.+|..+...|.+....+.+.+ .++..=||.+|++
T Consensus 8 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAA~aIs~ 60 (89)
T 2qsb_A 8 DQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQEN----ESLDLRCATVLSM 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTT----SCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHH
Confidence 4667888888999999999999999999888888775543 5565666666665
No 173
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.97 E-value=6.4 Score=26.82 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.8
Q ss_pred CCceEeCCCcceec
Q 030755 21 AGDTVCSECGLVLE 34 (172)
Q Consensus 21 ~G~~vC~~CG~V~~ 34 (172)
..-++|..||.|++
T Consensus 81 h~HliC~~Cg~v~~ 94 (131)
T 2o03_A 81 HHHLVCRSCGSTIE 94 (131)
T ss_dssp CEEEEETTTCCEEE
T ss_pred CCEEEeCCCCCEEE
Confidence 34689999999996
No 174
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=48.96 E-value=7.3 Score=26.91 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=14.4
Q ss_pred CCCCC-CCCCCceeEe--CCCCceEeCCCcceecc
Q 030755 4 AFCSD-CKKHTEVVFD--HSAGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~-Cg~~~~i~~D--~~~G~~vC~~CG~V~~e 35 (172)
.+|+. ||. ++.- ...|.++| ||.-++.
T Consensus 8 YkC~~~CGn---ivev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 8 FLQKESAGF---FLGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp ECC-----C---EEEESCCTTCEEEE--TTEEEEC
T ss_pred EECCCCCCC---EEEEEcCCCcceee--cCccccc
Confidence 47999 996 3332 45667777 8877653
No 175
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.35 E-value=6.5 Score=28.02 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=10.8
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
-++|..||.|++
T Consensus 107 HliC~~CG~v~e 118 (162)
T 4ets_A 107 HMICKNCGKIIE 118 (162)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 499999999986
No 176
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=47.91 E-value=8.8 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.9
Q ss_pred CceeEeC--CCCceEeCCCcceec
Q 030755 13 TEVVFDH--SAGDTVCSECGLVLE 34 (172)
Q Consensus 13 ~~i~~D~--~~G~~vC~~CG~V~~ 34 (172)
+.+..|. ..|...|.-||+...
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRYI 64 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEEE
T ss_pred CEEEEEccCCCCeEECCCCCCEEE
Confidence 4555555 589999999999874
No 177
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=47.84 E-value=8.6 Score=21.41 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=12.8
Q ss_pred eCCCCceEeCCCcceec
Q 030755 18 DHSAGDTVCSECGLVLE 34 (172)
Q Consensus 18 D~~~G~~vC~~CG~V~~ 34 (172)
|...+.++|..||.|=-
T Consensus 1 ~~~~~~~~CE~CG~~g~ 17 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIVGT 17 (43)
T ss_dssp CCSCCEEECTTTCCEEE
T ss_pred CCCCceehhhhhcCcch
Confidence 34567899999998743
No 178
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=47.57 E-value=1.9 Score=34.00 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=27.4
Q ss_pred CCCCCCCCCCceeEeC--CCCceEeCCCcc--------eecccccccCccccccc
Q 030755 4 AFCSDCKKHTEVVFDH--SAGDTVCSECGL--------VLESHSIDETSEWRTFA 48 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~--~~G~~vC~~CG~--------V~~e~~i~~~~ewr~f~ 48 (172)
.+||+|+. .+++. +....||..|+. +| +.++|.+. |.++.
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~~~r~~arerI-~~L~D~gs-F~El~ 80 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDHHIALTAYKRI-EAISDEGS-FTEFD 80 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCCBCCCCHHHHH-HHTSCTTC-CEEES
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCCCCCCCHHHHH-HHHccCCC-cEEEC
Confidence 47999997 34553 566789999999 44 35677653 55554
No 179
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.33 E-value=13 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
..|..|+.. |..-.-.--|..||.|+=.
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~ 37 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAFCN 37 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEEET
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEECh
Confidence 479999973 3444556677777777743
No 180
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=46.28 E-value=7.1 Score=27.43 Aligned_cols=30 Identities=27% Similarity=0.623 Sum_probs=20.2
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +.. ....-|..+|.+|.-|-.
T Consensus 26 ~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 26 RKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp GSCTTTCSS-CCCEEETTTTEEECHHHHHHHT
T ss_pred CcCCCCCCC-CCCceeeccCEEEchhccchhc
Confidence 468888873 332 334578888888877754
No 181
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=45.80 E-value=59 Score=21.09 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH
Q 030755 101 PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158 (172)
Q Consensus 101 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~aAAclYia 158 (172)
.+..+.++...+++|.+--.+|..+...|.+....+.+.+ ..+..=||.+|++-
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAAtAIs~L 65 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEE----QELIVRSATAIQYL 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTT----SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHHH
Confidence 4677888888999999999999999998888887765443 55656666666653
No 182
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=45.75 E-value=6.7 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +.. ....-|..+|..|.-|-.
T Consensus 28 ~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR 58 (134)
T 2iqj_A 28 KFCADCQSK-GPRWASWNIGVFICIRCAGIHR 58 (134)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCcCcCC-CCCeEEecCCEEEhHhhhHHHh
Confidence 468888873 332 334578888888877754
No 183
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=45.23 E-value=6.8 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=19.4
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +.. ....-|..+|.+|.-|-.
T Consensus 37 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 67 (138)
T 2owa_A 37 RTCFDCESR-NPTWLSLSFAVFICLNCSSDHR 67 (138)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCCCcCC-CCCeEEecCCEEEhHhhhHHHh
Confidence 468888873 333 234568888888877753
No 184
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.39 E-value=5.7 Score=28.22 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCCCCCCCCCce-eEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||.. +. -....-|..+|.+|.-|-.
T Consensus 39 ~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR 69 (147)
T 3dwd_A 39 NVCFECGAF-NPQWVSVTYGIWICLECSGRHR 69 (147)
T ss_dssp TBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CccCCCCCC-CCCeEEecccEeEhHhhChHHh
Confidence 468888873 33 2344678888888887764
No 185
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=44.35 E-value=21 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.705 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|..|+. +++-...--+.|.+|++++=..-
T Consensus 24 t~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~C 54 (65)
T 2enz_A 24 TFCEHCGT---LLWGLARQGLKCDACGMNVHHRC 54 (65)
T ss_dssp CBCSSSCC---BCCCSSSCSEEESSSCCEECTTT
T ss_pred cCchhcCh---hheecCCcccccCCCCCccCHhH
Confidence 57999986 34433334478999999885444
No 186
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=44.17 E-value=19 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.755 Sum_probs=19.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e 35 (172)
..|..|+. +++-...--+.|.+|++++-.
T Consensus 12 t~C~~C~~---~l~g~~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 12 TFCDHCGS---LLWGLVKQGLKCEDCGMNVHH 40 (50)
T ss_dssp CBCTTTCC---BCCSSSSCEEEETTTCCEECH
T ss_pred CCcCCCCc---eeeccCCccCEeCCCCCeECH
Confidence 57999986 234322334789999988743
No 187
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=43.93 E-value=5.8 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||.. +.. ....-|..+|.+|.-|-.
T Consensus 38 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 68 (144)
T 2p57_A 38 KACFDCGAK-NPSWASITYGVFLCIDCSGVHR 68 (144)
T ss_dssp GBCTTTCCB-SCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCcCC-CCCeEEeccCEEEhhhchHHHc
Confidence 468888873 332 334568888888877653
No 188
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=43.03 E-value=11 Score=26.41 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~fPP---r~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEECCCCc---EEeCC---CCCCCCCCCC
Confidence 57999997 23332 3589999965
No 189
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.78 E-value=12 Score=25.48 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=22.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|..|+.. |....-.--|..||.|+=..-
T Consensus 20 ~~C~~C~~~----Fs~~~RkHHCR~CG~ifC~~C 49 (120)
T 1y02_A 20 PSCKSCGAH----FANTARKQTCLDCKKNFCMTC 49 (120)
T ss_dssp CCCTTTCCC----CSSGGGCEECTTTCCEECGGG
T ss_pred CcccCcCCc----cccccccccCCCCCCeeCHHH
Confidence 469999973 445567789999999986444
No 190
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=42.14 E-value=6.3 Score=27.36 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=18.3
Q ss_pred CCCCCCCCCCceeEe-CCCCceEeCCCccee
Q 030755 4 AFCSDCKKHTEVVFD-HSAGDTVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D-~~~G~~vC~~CG~V~ 33 (172)
..||+|+.. +-+.. .......|..|+.-+
T Consensus 15 ~~c~~c~~~-~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 15 LTCLACGQA-NKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EECTTTCCE-EEEEGGGTTSCCBCTTTCCBS
T ss_pred EECcccccc-ccCCcccccCCCCCCcCCccc
Confidence 578999874 33333 335566788887655
No 191
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.37 E-value=17 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.593 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|..|+.. |..-.-.--|..||.|+=...
T Consensus 165 ~~C~~C~~~----F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 165 EECHRCRVQ----FGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp SBCTTTCCB----CBTTBCCEECTTTCCEECTTT
T ss_pred CCCcCcCCC----CCccccccccCCCcCEeChhh
Confidence 479999973 344556788999999985443
No 192
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.36 E-value=7.6 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=19.4
Q ss_pred CCCCCCCCCCce-eEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +. -....-|..+|.+|.-|-.
T Consensus 30 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 60 (141)
T 2crr_A 30 KYCADCEAK-GPRWASWNIGVFICIRCAGIHR 60 (141)
T ss_dssp SSCSSSCCS-SCCSEETTTTEECCHHHHHHHH
T ss_pred CcCCCCCCC-CCCeEEeccCeEEhhhhhHhHh
Confidence 468888873 33 2334578888888877653
No 193
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.09 E-value=12 Score=24.34 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 030755 4 AFCSDCKKH 12 (172)
Q Consensus 4 ~~C~~Cg~~ 12 (172)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 457777763
No 194
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.25 E-value=8.2 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||.. +.. ....-|..+|.+|--|-.
T Consensus 30 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 60 (149)
T 2crw_A 30 KVCFDCGAK-NPSWASITYGVFLCIDCSGSHR 60 (149)
T ss_dssp SBCSSSCCB-SCCCEETTTTEECCHHHHHHHH
T ss_pred CcCCCCcCC-CCCcEEeccCEEEchhcchhhc
Confidence 568888873 332 233568888888877653
No 195
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.20 E-value=23 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKV 136 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a 136 (172)
..|..|+..++||..|+.. +|.+.
T Consensus 33 eei~~LA~~lgL~~~VVrV---WFqNr 56 (71)
T 2da7_A 33 DELLKISIAVGLPQEFVKE---WFEQR 56 (71)
T ss_dssp HHHHHHHHHHTCCHHHHHH---HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH---HHhhc
Confidence 4689999999999998876 55543
No 196
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=38.59 E-value=12 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG 30 (172)
..||.|+....++. -.|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 47999987555442 4677774
No 197
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=38.09 E-value=17 Score=21.42 Aligned_cols=22 Identities=32% Similarity=0.948 Sum_probs=14.5
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
.|.-||. .+ +. --..+|..||.
T Consensus 19 ~CrRCG~-~s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGE-KS--YH--TKKKVCSSCGF 40 (57)
T ss_dssp ECTTTCS-EE--EE--TTTTEETTTCT
T ss_pred cccccCC-hh--hh--ccccccccccC
Confidence 5888887 22 22 23678888886
No 198
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=37.57 E-value=13 Score=21.20 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=18.4
Q ss_pred CCCCCCCC----Cce-eEeCCCCceEeCCCcceec
Q 030755 5 FCSDCKKH----TEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 5 ~C~~Cg~~----~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
.|+.||.. ..+ .....+....|..||..+.
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 58999862 001 1223355688999998764
No 199
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=37.46 E-value=9.4 Score=30.26 Aligned_cols=41 Identities=20% Similarity=0.474 Sum_probs=26.7
Q ss_pred CCCCCCCCCCceeEeCC--CCceEeCCCcceec-------ccccccCccccccc
Q 030755 4 AFCSDCKKHTEVVFDHS--AGDTVCSECGLVLE-------SHSIDETSEWRTFA 48 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~--~G~~vC~~CG~V~~-------e~~i~~~~ewr~f~ 48 (172)
.+||+|+.. ++..+ .-..||..||.=.. +.++|.+. |..|.
T Consensus 25 ~kc~~~~~~---~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D~gs-F~E~~ 74 (304)
T 2f9y_B 25 TKCDSCGQV---LYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGS-LVELG 74 (304)
T ss_dssp ECCTTTCCC---EETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSCSSC-CEECS
T ss_pred Hhhhhccch---hhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCCCCc-EEEEC
Confidence 479999972 45443 66799999997542 23466553 55554
No 200
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=36.62 E-value=7.1 Score=29.90 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceeEeC----CCC-ceEeCCCcceecccccccC
Q 030755 4 AFCSDCKKHTEVVFDH----SAG-DTVCSECGLVLESHSIDET 41 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~----~~G-~~vC~~CG~V~~e~~i~~~ 41 (172)
..|..|+.. ++. ..+ ...|..||-++..+++-.|
T Consensus 122 ~~C~~C~~~----~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~Fg 160 (249)
T 1m2k_A 122 VRCTSCNNS----FEVESAPKIPPLPKCDKCGSLLRPGVVWAG 160 (249)
T ss_dssp EEESSSSCE----EECSSCCCSSSCCBCSSSSSBEEEEECCTT
T ss_pred eEeCCCCCc----ccchhhccCCCCCCCCCCCCCcCCeEEecC
Confidence 369999962 222 123 4689999999988876544
No 201
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.60 E-value=23 Score=22.12 Aligned_cols=33 Identities=30% Similarity=0.721 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~i~ 39 (172)
..|-.|+. +++-...--+.|.+|++++-..-.+
T Consensus 29 t~C~~C~~---~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 29 TFCSVCKD---FVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCCSSSCC---CCCSSSCCEEEETTTCCEECTTGGG
T ss_pred cChhhcCh---hhccccccccccCCcCCeeChhhhh
Confidence 57999996 2443223347899999998655544
No 202
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.38 E-value=15 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.745 Sum_probs=14.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
..|.-||+ ... . --...|..||.
T Consensus 18 ~lCrRCG~-~sy--H--~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGR-VSY--N--VKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCS-BCE--E--TTTTEETTTCT
T ss_pred eeecccCc-chh--c--cccccccccCC
Confidence 45888887 332 2 34667888886
No 203
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=35.68 E-value=20 Score=24.09 Aligned_cols=31 Identities=35% Similarity=0.767 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeEeC-CCCc--eEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDH-SAGD--TVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~-~~G~--~vC~~CG~V~~ 34 (172)
..||.|+.++.+-+-. +.|. -+|..||.+|+
T Consensus 74 lv~p~~~k~tRvg~~~~edG~kvRv~kk~g~~i~ 107 (110)
T 3v2d_Y 74 PICPACGKPTRVRKKFLENGKKIRVCAKCGGALD 107 (110)
T ss_dssp EBCTTTCSBCCEEEEECSSCCEEEEESSSCCBCC
T ss_pred EEcCcCCCccEEEEEECCCCcEEEEEecCCCccC
Confidence 5789999766665543 5564 46899998884
No 204
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.35 E-value=45 Score=19.64 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=17.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHH
Q 030755 112 IATMSDRLGLVATIKDRANEIYKK 135 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~ 135 (172)
+..|+..|++|...+...+..++.
T Consensus 28 ~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 678999999998777665544443
No 205
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=34.92 E-value=12 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||.. +.. ....-|..+|..|.-|-.
T Consensus 23 ~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR 53 (163)
T 3sub_A 23 NKCFDCGIS-NPDWVSVNHGIFLCINCSGVHR 53 (163)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CccccCCCC-CCCeEEecCCeeEHHhhhHHhc
Confidence 468888873 332 234578888888876654
No 206
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=34.85 E-value=43 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.3
Q ss_pred CCcHHHHH----HHHHHHHHHhhC
Q 030755 120 GLVATIKD----RANEIYKKVEDQ 139 (172)
Q Consensus 120 ~Lp~~v~~----~A~~i~~~a~~~ 139 (172)
.||+.|.+ .|.+||+++++.
T Consensus 28 dLP~sVr~~LP~hAQ~Iy~kAfNs 51 (96)
T 1sg7_A 28 DLPESVKHVLPSHAQDIYKEAFNS 51 (96)
T ss_dssp TSCHHHHTTCCSHHHHHHHHHHHH
T ss_pred hCCHHHHHhCCHHHHHHHHHHHHH
Confidence 45555553 677777766654
No 207
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=34.37 E-value=50 Score=19.47 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCC
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSR 143 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~ 143 (172)
.|+.++.+++++++ ....+++++.++|+++
T Consensus 27 dI~~~a~kygV~kd---eV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQ---EVVKLLEALKNKGLIA 56 (59)
T ss_dssp EHHHHHHHHCCCHH---HHHHHHHHHHHTTSEE
T ss_pred eHHHHHHHhCCCHH---HHHHHHHHHHHCCCee
Confidence 36778889999874 4455777777777653
No 208
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=34.21 E-value=9.7 Score=20.66 Aligned_cols=15 Identities=20% Similarity=0.671 Sum_probs=11.4
Q ss_pred CCceEeCCCcceecc
Q 030755 21 AGDTVCSECGLVLES 35 (172)
Q Consensus 21 ~G~~vC~~CG~V~~e 35 (172)
.....|..||..|..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 445789999998864
No 209
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=33.75 E-value=43 Score=22.90 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCC---C-------CCHHHHHHHHHHHHH
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSR---G-------RNQDALLAACLYIAC 159 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~---G-------r~~~~~aAAclYiac 159 (172)
.++.|++.+++|..+++.- +.++.+.|++. | |.|+.|--.=||-|.
T Consensus 25 s~~~IA~~~~i~~~~l~kI---l~~L~~aGlv~s~rG~GGy~Lar~p~~Itl~dVi~av 80 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRM---ISLLKKADILTSRAGVPGASLKKDPADISLLEVYRAV 80 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHH---HHHHHHTTSEECCSSSSSCEESSCGGGCBHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH---HHHHHHCCceEeecCCCCceecCCHHHCCHHHHHHHH
Confidence 4778999999999988884 44444545432 2 445555555555443
No 210
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=33.56 E-value=18 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcce
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V 32 (172)
..||.|+. .. .. ..+.+.|.+|..+
T Consensus 3 ~~Cp~C~~-~~-~~--~~~~~~C~~~~~~ 27 (269)
T 1p91_A 3 FSCPLCHQ-PL-SR--EKNSYICPQRHQF 27 (269)
T ss_dssp BBCTTTCC-BC-EE--ETTEEECTTCCEE
T ss_pred ccCCCCCc-cc-ee--CCCEEECCCCCcC
Confidence 57999997 32 22 3467899998754
No 211
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=33.12 E-value=34 Score=20.08 Aligned_cols=30 Identities=20% Similarity=0.737 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~ 36 (172)
..|..|+. +++-...--+.|.+|++.+=..
T Consensus 21 t~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~ 50 (65)
T 3uej_A 21 TFCDHCGS---LLWGLVKQGLKCEDCGMNVHHK 50 (65)
T ss_dssp CBCTTTCC---BCCSSSSCEEEETTTCCEECHH
T ss_pred CcccccCh---hhhccCceeeECCCCCCeEchh
Confidence 57999986 2333233457899999887433
No 212
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.03 E-value=23 Score=31.40 Aligned_cols=23 Identities=35% Similarity=0.798 Sum_probs=14.2
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcceec
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~ 34 (172)
.||.||.. ...|+ .|..||.+++
T Consensus 142 tcP~c~~~------~~~Gd-~c~~~G~~l~ 164 (722)
T 1rqg_A 142 TCPYCGAE------DQKGD-QCEVCGRPLT 164 (722)
T ss_dssp BCSSSCCS------CCCTT-TCSSSCCCCC
T ss_pred ccCccCCc------cCCcc-hhhhcccccC
Confidence 58888762 23454 3777777764
No 213
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=32.83 E-value=27 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.6
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCccee
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~ 33 (172)
.|..|+.. ....+|..||.|-
T Consensus 36 ~C~~C~~~--------~~LwlCL~CG~vg 56 (129)
T 2g45_A 36 KCSKCDMR--------ENLWLNLTDGSIL 56 (129)
T ss_dssp CCSSSSCC--------SSEEEETTTCCEE
T ss_pred cCccccCc--------CceEEeccCCccc
Confidence 57777762 2467888888884
No 214
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=32.52 E-value=33 Score=24.16 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.9
Q ss_pred CcccCCC
Q 030755 56 PVRVGGP 62 (172)
Q Consensus 56 ~~r~g~~ 62 (172)
.-|+|+.
T Consensus 106 iCR~G~~ 112 (143)
T 2dkt_A 106 ICRIGPK 112 (143)
T ss_dssp EEEESCG
T ss_pred ceeccCC
Confidence 4566653
No 215
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=32.44 E-value=24 Score=21.68 Aligned_cols=33 Identities=27% Similarity=0.704 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~i~ 39 (172)
..|..|+. +++-...--+.|.+|++++-..-.+
T Consensus 35 t~C~~C~~---~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 35 TFCSVCHE---FVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp EECSSSCC---EECCTTCCEEECSSSCCEEESGGGS
T ss_pred cCccccCh---hhccccccccCcCCCCCcCCHhHHh
Confidence 56999986 3443233457899999988655433
No 216
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=31.98 E-value=25 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.843 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG 30 (172)
..||.|+....++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 3699999843332 25677774
No 217
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=31.94 E-value=67 Score=17.63 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Q 030755 106 ILAFKTIATMSDRLGLV-ATIKDRANEIYKK 135 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp-~~v~~~A~~i~~~ 135 (172)
.+....|..+|...|++ ..++..|..-|-.
T Consensus 18 ~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 48 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNLTLSDVCRLAIKEYLD 48 (55)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677899999999998 4677888766643
No 218
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.52 E-value=35 Score=21.37 Aligned_cols=33 Identities=15% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~i~ 39 (172)
..|..|+. +++-...--+.|.+|++++=..-..
T Consensus 29 t~C~~C~~---~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 29 TFCDHCGS---LLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp CBCSSSCC---BCCCSSSCEEECSSSCCEEETTTTT
T ss_pred cCCcccCc---cccccccCCCcCCCcCCccCHhHHh
Confidence 57999986 2343223347799999998655433
No 219
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=31.51 E-value=73 Score=24.71 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+++.+.+..+++|-.+.+.+.++|+.+.+.++
T Consensus 247 ~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~ 282 (300)
T 3obb_A 247 AKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGY 282 (300)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCC
Confidence 455778889999999999999999999999998874
No 220
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=31.45 E-value=14 Score=22.79 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=10.2
Q ss_pred eEeCCCcceecc
Q 030755 24 TVCSECGLVLES 35 (172)
Q Consensus 24 ~vC~~CG~V~~e 35 (172)
+.|-.||.||.+
T Consensus 5 VRCFTCGkvi~~ 16 (70)
T 1twf_J 5 VRCFSCGKVVGD 16 (70)
T ss_dssp SBCTTTCCBCTT
T ss_pred eecCCCCCChHH
Confidence 579999999974
No 221
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=31.05 E-value=36 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.624 Sum_probs=17.3
Q ss_pred CCCCCCCCC----CceeEeCCCC-----ceEeCCCcceec
Q 030755 4 AFCSDCKKH----TEVVFDHSAG-----DTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~----~~i~~D~~~G-----~~vC~~CG~V~~ 34 (172)
..|..|++. .+.-.-...| .+-|..||.+-.
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 479999862 0111112233 446999998753
No 222
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=30.88 E-value=20 Score=27.44 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCCCCCCCCCceeEeCC-------CC-ceEeCCCcc-eecccccccC
Q 030755 4 AFCSDCKKHTEVVFDHS-------AG-DTVCSECGL-VLESHSIDET 41 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~-------~G-~~vC~~CG~-V~~e~~i~~~ 41 (172)
..|..|+.. +|.. .+ ...|..||- ++..+++-.|
T Consensus 124 ~~C~~C~~~----~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~Fg 166 (253)
T 1ma3_A 124 LDCLDCHET----YDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFG 166 (253)
T ss_dssp EEETTTCCE----EEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBT
T ss_pred eeeCCCCCc----CcHHHHHHHhccCCCCCCCCCCCccccceEEEeC
Confidence 369999962 3321 22 368999999 9987776544
No 223
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.78 E-value=15 Score=24.15 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=6.0
Q ss_pred CCCCCCCC
Q 030755 4 AFCSDCKK 11 (172)
Q Consensus 4 ~~C~~Cg~ 11 (172)
..||.||+
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 36888887
No 224
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=30.61 E-value=27 Score=20.73 Aligned_cols=31 Identities=19% Similarity=0.713 Sum_probs=20.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|..|+. +++-...--+.|.+|++++=..-
T Consensus 25 t~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~C 55 (66)
T 1y8f_A 25 TYCYECEG---LLWGIARQGMRCTECGVKCHEKC 55 (66)
T ss_dssp CCCTTTCC---CCCSSCCEEEEETTTCCEECTTH
T ss_pred cChhhcCh---hhcccCcceeEcCCCCCeeCHHH
Confidence 57999986 23332233477999998875443
No 225
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=30.56 E-value=22 Score=26.96 Aligned_cols=34 Identities=15% Similarity=0.550 Sum_probs=23.3
Q ss_pred CCCCCCCCCCceeEeC-------CC-CceEeCCCcceecccccccC
Q 030755 4 AFCSDCKKHTEVVFDH-------SA-GDTVCSECGLVLESHSIDET 41 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~-------~~-G~~vC~~CG~V~~e~~i~~~ 41 (172)
..|..|+.. +|. .. -...|..||-++..+++-.|
T Consensus 122 ~~C~~C~~~----~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~Fg 163 (246)
T 1yc5_A 122 YYCVRCEKK----YTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFG 163 (246)
T ss_dssp EEETTTCCE----EEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBT
T ss_pred eEcCCCCCC----CcHHHHHHHhccCCCCCCCCCCCccCcceEECC
Confidence 369999962 221 12 24689999999988876554
No 226
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=30.43 E-value=27 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC---Ccceecccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~---CG~V~~e~~i~ 39 (172)
..||.||+ .++....+-.+.|++ |-.-+.+.++.
T Consensus 406 ~~CP~Cgs--~~~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (586)
T 4glx_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (586)
T ss_dssp SBCTTTCC--BEECCTTCSCCEESCGGGCHHHHHHHHHH
T ss_pred CcCCCCCC--chhhhhcccccEeCCCcCcHHHHHhHHHh
Confidence 47999997 355555566788985 87766655533
No 227
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.41 E-value=1.2e+02 Score=20.29 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=32.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCC-CHHHHHHHHHHHHHHhCCCCCC
Q 030755 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGR-NQDALLAACLYIACRQEDKPRT 167 (172)
Q Consensus 113 ~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr-~~~~~aAAclYiacR~~~~~~t 167 (172)
..+-.+++||..... +|++.+-..+ .|+ +.+..+.|.-.+.+++.|.+++
T Consensus 55 r~~~~~sgLp~~~L~---~Iw~laD~d~--dG~Ld~~EF~~aM~Li~~~~~G~~lP 105 (121)
T 3fia_A 55 RNFFFQSGLPQPVLA---QIWALADMNN--DGRMDQVEFSIAMKLIKLKLQGYQLP 105 (121)
T ss_dssp HHHHGGGCCCHHHHH---HHHHHHCTTC--SSEECHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCHHHHH---HHHHHHcCCC--CCcCCHHHHHHHHHHHHHHHcCCCCC
Confidence 333346799976544 4777764332 343 5678888888888888886544
No 228
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.22 E-value=19 Score=26.38 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=11.3
Q ss_pred CceEeCCCcceec
Q 030755 22 GDTVCSECGLVLE 34 (172)
Q Consensus 22 G~~vC~~CG~V~~ 34 (172)
-..+|..||.|.+
T Consensus 154 ~~~~C~~CG~~~~ 166 (191)
T 1lko_A 154 TKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEETTTCCEEE
T ss_pred ceEEECCCCCEee
Confidence 3689999999986
No 229
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=29.54 E-value=89 Score=24.07 Aligned_cols=36 Identities=3% Similarity=-0.033 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|-.+.+.+.++|+.+...+.
T Consensus 242 ~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~ 277 (297)
T 4gbj_A 242 LKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGR 277 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCC
Confidence 455678889999999999999999999999998874
No 230
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=29.49 E-value=17 Score=24.01 Aligned_cols=35 Identities=26% Similarity=0.637 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeE-----eCCCC------ceEeCCCcceeccccc
Q 030755 4 AFCSDCKKHTEVVF-----DHSAG------DTVCSECGLVLESHSI 38 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~-----D~~~G------~~vC~~CG~V~~e~~i 38 (172)
.-|..|+...-+.. +.+.| +-+|.+|+.||.++-+
T Consensus 27 ~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~HvIA~HeY 72 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEY 72 (106)
T ss_dssp CCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEE
T ss_pred hhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceEeeeeeE
Confidence 46999997321111 11233 3579999999987743
No 231
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=29.34 E-value=42 Score=29.97 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHh
Q 030755 114 TMSDRLGLVATIKDRANEIYKKVE 137 (172)
Q Consensus 114 ~~~~~L~Lp~~v~~~A~~i~~~a~ 137 (172)
+++..+|||+.|+++|.++.+...
T Consensus 740 ~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 740 EVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHh
Confidence 577889999999999999998864
No 232
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=29.28 E-value=51 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCC---CC--------CCHHHHHHHHHHHHH
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSS---RG--------RNQDALLAACLYIAC 159 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~---~G--------r~~~~~aAAclYiac 159 (172)
.++.|++.+++|...++....-+ .+.|++ +| |.++.+--.=||-|.
T Consensus 30 s~~~IA~~~~i~~~~l~kil~~L---~~aGlv~s~rG~~GGy~Lar~p~~Itl~dV~~av 86 (143)
T 3t8r_A 30 SLKSIAEENNLSDLYLEQLVGPL---RNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLL 86 (143)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHH---HHTTSEEECSSSSSEEEESSCGGGCBHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH---HHCCEEEecCCCCCCeeecCCcccCCHHHHHHHh
Confidence 36778999999998888855444 444554 33 445555555555544
No 233
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.27 E-value=21 Score=19.74 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCCCceEeCCCcceeccc
Q 030755 19 HSAGDTVCSECGLVLESH 36 (172)
Q Consensus 19 ~~~G~~vC~~CG~V~~e~ 36 (172)
.....-||.+||.=|.=.
T Consensus 13 ~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCEEECTTTCCEEETT
T ss_pred ccccchhhcccCCcchHH
Confidence 456678999999876433
No 234
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=29.09 E-value=40 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.580 Sum_probs=17.8
Q ss_pred CCCCCCCCC----CceeEeCCCC-----ceEeCCCcceec
Q 030755 4 AFCSDCKKH----TEVVFDHSAG-----DTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~----~~i~~D~~~G-----~~vC~~CG~V~~ 34 (172)
..|..|++. .+.-.-...+ .+-|..||.+-.
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 479999862 0111111233 456999998864
No 235
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=28.87 E-value=20 Score=33.36 Aligned_cols=34 Identities=35% Similarity=0.770 Sum_probs=23.2
Q ss_pred CCCCCCCCCceeEeCCCC------ceEeCCCcceecccccc
Q 030755 5 FCSDCKKHTEVVFDHSAG------DTVCSECGLVLESHSID 39 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G------~~vC~~CG~V~~e~~i~ 39 (172)
.||+|+- ++++.|.+-| +-.|..||.-+.-.-.+
T Consensus 504 ~c~~c~~-~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~~ 543 (1041)
T 3f2b_A 504 VCPNCKH-SEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHD 543 (1041)
T ss_dssp ECTTTCC-EEECCSSCCSCGGGSCCCBCTTTCCBCEEECCC
T ss_pred cCccccc-cccccccccccccCCccccCccccccccccCCC
Confidence 6999997 5666554332 56899999987544333
No 236
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=28.57 E-value=27 Score=19.39 Aligned_cols=27 Identities=33% Similarity=0.864 Sum_probs=19.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|..|+. +++ + -+.|.+||+++-..-
T Consensus 15 t~C~~C~~---~l~---q-G~~C~~C~~~~H~~C 41 (52)
T 1faq_A 15 AFCDICQK---FLL---N-GFRCQTCGYKFHEHC 41 (52)
T ss_dssp EECTTSSS---EEC---S-EEECTTTTCCBCSTT
T ss_pred cCCCCccc---ccc---c-CCEeCCCCCeEChhH
Confidence 56899986 344 3 579999999885444
No 237
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.30 E-value=12 Score=23.56 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=7.9
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
.+.|.+||....
T Consensus 37 ~I~CnDC~~~s~ 48 (79)
T 2k2d_A 37 DILCNDCNGRST 48 (79)
T ss_dssp EEEESSSCCEEE
T ss_pred EEECCCCCCCcc
Confidence 456777777653
No 238
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=28.06 E-value=13 Score=29.27 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCCCCCCCCcee-EeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~-~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +.. ....-|-.+|..|.-|-.
T Consensus 38 ~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr 68 (329)
T 3o47_A 38 NVCFECGAF-NPQWVSVTYGIWICLECSGRHR 68 (329)
T ss_dssp TBCTTTCCB-SCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCCCC-CCCeEEecCCEEEChhhhhhhc
Confidence 579999983 333 344679999999986653
No 239
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.97 E-value=36 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC---Ccceecccccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~---CG~V~~e~~i~ 39 (172)
..||.||+ .++....+-.+.|.+ |-.-+.+.++.
T Consensus 406 ~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (671)
T 2owo_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (671)
T ss_dssp SBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHHH
T ss_pred CCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHHH
Confidence 47999998 366544456677994 77666655543
No 240
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.89 E-value=66 Score=20.13 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=17.9
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCC
Q 030755 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRG 144 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~G 144 (172)
|.++++.|+||..-++ .+..++...+.+.|
T Consensus 33 l~~La~ll~ls~~~vE---~~ls~mI~~~~l~a 62 (84)
T 1ufm_A 33 FEELGALLEIPAAKAE---KIASQMITEGRMNG 62 (84)
T ss_dssp HHHHHHHTTSCHHHHH---HHHHHHHHTTSSCE
T ss_pred HHHHHHHHCcCHHHHH---HHHHHHHhCCcEEE
Confidence 6789999999964433 34444433333333
No 241
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.23 E-value=13 Score=30.30 Aligned_cols=30 Identities=20% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|+.|+.. ++...-.-.|..||.|+=...
T Consensus 376 ~~c~~c~~~----f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 376 MMCMNCGCD----FSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp ----------------------------------
T ss_pred CcCCCcCCC----CCCcchhhhcccCcCEeehhh
Confidence 469999973 344456788999999885443
No 242
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.09 E-value=31 Score=15.14 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=8.0
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
...|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 456888877653
No 243
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=27.06 E-value=22 Score=30.34 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=5.5
Q ss_pred CCCCCCC
Q 030755 5 FCSDCKK 11 (172)
Q Consensus 5 ~C~~Cg~ 11 (172)
.||.||.
T Consensus 157 ~cp~c~~ 163 (560)
T 3h99_A 157 TCPKCKS 163 (560)
T ss_dssp ECTTTCC
T ss_pred CCCCCCC
Confidence 5888886
No 244
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=27.05 E-value=94 Score=24.03 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
..+-.+.+.+++..+++|..+.+.+.++|+.+.+.+.
T Consensus 265 ~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 301 (320)
T 4dll_A 265 QLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGL 301 (320)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCC
Confidence 3555678889999999999999999999999988764
No 245
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=26.99 E-value=1.2e+02 Score=18.83 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHhh
Q 030755 107 LAFKTIATMSDRLGLVATIKDRANE-IYKKVED 138 (172)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~-i~~~a~~ 138 (172)
+.......+++.|||+.+ +|.+ +|+.+..
T Consensus 11 ~lK~~a~~v~~~lGl~~s---~Ai~~fl~~v~~ 40 (79)
T 4fxe_A 11 ELKARSYAALEKMGVTPS---EALRLMLEYIAD 40 (79)
T ss_dssp HHHHHHHHHHHHHTCCHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHH---HHHHHHHHHHHH
Confidence 344567778889999853 3333 4455443
No 246
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=26.78 E-value=72 Score=19.89 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKV 136 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a 136 (172)
+.|+.+++..+|+...++.+.+-+-..
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~ 31 (90)
T 1mul_A 5 QLIDVIAEKAELSKTQAKAALESTLAA 31 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 578888899999976655555444443
No 247
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=26.76 E-value=98 Score=23.75 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+.++.+++|..+.+.+.++|+.+.+.+.
T Consensus 246 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 281 (306)
T 3l6d_A 246 ADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGY 281 (306)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Confidence 455677888899999999999999999999988764
No 248
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=26.76 E-value=26 Score=27.31 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.4
Q ss_pred ceEeCCCcceecccccccC
Q 030755 23 DTVCSECGLVLESHSIDET 41 (172)
Q Consensus 23 ~~vC~~CG~V~~e~~i~~~ 41 (172)
...|..||-++..+++-.|
T Consensus 163 ~P~C~~Cgg~lrP~vv~FG 181 (289)
T 1q1a_A 163 FVKCDVCGELVKPAIVFFG 181 (289)
T ss_dssp CCBCTTTCCBEEEEECCBT
T ss_pred CccCCCCCCEECCCEEEcC
Confidence 3689999999988876655
No 249
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=26.69 E-value=78 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhCc
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQK 140 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~ 140 (172)
+.|+.++.++++|.......++=|..+...+
T Consensus 96 dTleeLA~~~gid~~~L~~TV~~yN~~~~~G 126 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVKNYQGYVQDG 126 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3588899999999988888888888877655
No 250
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=26.29 E-value=68 Score=19.98 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKK 135 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~ 135 (172)
+.|+.++...+|+...++.+.+-+-.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 5 ELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 57888889999997655555544433
No 251
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=26.26 E-value=53 Score=29.52 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh
Q 030755 113 ATMSDRLGLVATIKDRANEIYKKVE 137 (172)
Q Consensus 113 ~~~~~~L~Lp~~v~~~A~~i~~~a~ 137 (172)
-.++..+|||+.|+++|.++.+...
T Consensus 773 i~vA~~~GlP~~vi~rA~~~l~~le 797 (800)
T 1wb9_A 773 LAVAALAGVPKEVIKRARQKLRELE 797 (800)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3577899999999999999998864
No 252
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=25.92 E-value=9.2 Score=25.27 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q 030755 1 MTDAFCSDCKK 11 (172)
Q Consensus 1 ~~~~~C~~Cg~ 11 (172)
|....||.||.
T Consensus 1 Mm~I~CP~CG~ 11 (99)
T 2gag_D 1 MMLIDCPNCGP 11 (99)
T ss_dssp CCEEEETTTEE
T ss_pred CCEecCCCCCC
Confidence 56678999994
No 253
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=25.81 E-value=69 Score=20.19 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKVED 138 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~ 138 (172)
+.|+.+++..+|+...++.+.+-+-....
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~~~~i~ 36 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTVVESIT 36 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 47888889999997666666654444433
No 254
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=25.68 E-value=96 Score=21.52 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 030755 109 FKTIATMSDRLGLVATIKDRANEIYKKV 136 (172)
Q Consensus 109 ~~~I~~~~~~L~Lp~~v~~~A~~i~~~a 136 (172)
...|.+++..|||++...+.....+...
T Consensus 116 ~~~L~~iA~~Lgls~~~~~~l~~~~~~~ 143 (161)
T 2ou3_A 116 KAKIRKMATILGIKEEIVDQLEQLYYYE 143 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4579999999999998877776666554
No 255
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=25.68 E-value=2.2e+02 Score=22.94 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 030755 104 GLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALL 151 (172)
Q Consensus 104 ~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr~~~~~a 151 (172)
.+.+.++.|.+.-....+|+...+....+|+.+.+....-||+...+.
T Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKRlRP~l 86 (395)
T 3mav_A 39 MYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGIL 86 (395)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCchhhhHHH
Confidence 344555566666677889999999888999999887777788765543
No 256
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=25.59 E-value=53 Score=18.09 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKV 136 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a 136 (172)
..+..++.+|||....++. +|+..
T Consensus 25 etlheyaqklglnqqaieq---ffref 48 (52)
T 1y66_A 25 ETLHEYAQKLGLNQQAIEQ---FFREF 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhCccHHHHHH---HHHHH
Confidence 4567789999999887776 45544
No 257
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=24.89 E-value=74 Score=20.05 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcCCCC
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRG 144 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~G 144 (172)
+.|+.+++..+|+...++.+.+-+-......+..|
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (94)
T 1p71_A 5 ELVDAVAEKASVTKKQADAVLTAALETIIEAVSSG 39 (94)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 57888888999997666666655544443333333
No 258
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.89 E-value=35 Score=28.22 Aligned_cols=30 Identities=20% Similarity=0.576 Sum_probs=18.4
Q ss_pred CCCCCCCCCCce---eEe-CCCCc-----eEeCCCccee
Q 030755 4 AFCSDCKKHTEV---VFD-HSAGD-----TVCSECGLVL 33 (172)
Q Consensus 4 ~~C~~Cg~~~~i---~~D-~~~G~-----~vC~~CG~V~ 33 (172)
..||+||.+... .++ |--++ ..|..||+=-
T Consensus 221 s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp ECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 369999974221 122 23444 4699999854
No 259
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=24.86 E-value=1.1e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|..+.+.+.++|+.+.+.+.
T Consensus 258 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 293 (310)
T 3doj_A 258 QKDMRLALALGDENAVSMPVAAAANEAFKKARSLGL 293 (310)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCC
Confidence 455677889999999999999999999999988764
No 260
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=24.85 E-value=27 Score=27.37 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHH
Q 030755 106 ILAFKTIATMSDRLGLVATIKDR 128 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~ 128 (172)
-++...+..+++.||-.+++.+.
T Consensus 250 g~~~~~~~~L~~~lgw~~el~~~ 272 (285)
T 3glr_A 250 GDVVHGVESLVELLGWTEEMRDL 272 (285)
T ss_dssp SCHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCHHHHHHH
Confidence 35677899999999988766554
No 261
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=24.75 E-value=35 Score=25.44 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceeEeCC---------CCceEeCCCcceecc
Q 030755 4 AFCSDCKKHTEVVFDHS---------AGDTVCSECGLVLES 35 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~---------~G~~vC~~CG~V~~e 35 (172)
..||.||.. .+++.. -..+.|.+|+..+..
T Consensus 23 l~Cp~C~~~--~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~ 61 (206)
T 3flo_B 23 LSCPSCDKR--FPFGGIVSSNYYRVSYNGLQCKHCEQLFTP 61 (206)
T ss_dssp EECTTTCCE--EEECSSSCCSSEEEETTEEEETTTCCBCCH
T ss_pred EECCCCCCc--cCCCCcccCCCcccccccccCCCCCCcCCH
Confidence 369999962 234321 124679999986643
No 262
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=24.68 E-value=24 Score=18.55 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=15.8
Q ss_pred CCCCCCCCCceeEeC-CCCceEeCCCcc
Q 030755 5 FCSDCKKHTEVVFDH-SAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~-~~G~~vC~~CG~ 31 (172)
.|-+||....+..|- ......|-.||.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 29 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQEGCWNCGS 29 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCCSSCTTTCC
T ss_pred eeeccCCCCcccccCCCCCCCccccCCC
Confidence 577888644444442 223567888875
No 263
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=24.57 E-value=1.6e+02 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC---CCCCCHHHHHH
Q 030755 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS---SRGRNQDALLA 152 (172)
Q Consensus 109 ~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~---~~Gr~~~~~aA 152 (172)
.+.+.+.++.+++|..+.+.+.++|+.+.+.++ ++|..++.+..
T Consensus 258 l~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 304 (312)
T 3qsg_A 258 LGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAWLR 304 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCSSCCSSHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcccccCCCchhHHH
Confidence 556667788999999999999999999887653 34556655543
No 264
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.52 E-value=47 Score=19.51 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~~~G~~vC~~CG~V~~e~~ 37 (172)
..|-.||. .+. ...=.+-|.+|+++.-..-
T Consensus 20 ~~C~~Cg~---~i~-~gkq~~kC~dC~~~cH~~C 49 (61)
T 4b6d_A 20 ESCVPCGK---RIK-FGKLSLKCRDCRVVSHPEC 49 (61)
T ss_dssp EECTTTCC---EEC-TTCEEEEESSSSCEECGGG
T ss_pred cccccccC---EEE-EeeEeeECCCCCCeEchhH
Confidence 46999986 232 2222489999999985443
No 265
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=24.41 E-value=74 Score=19.86 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKK 135 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~ 135 (172)
+.|+.+++..+|+...++.+.+-+-.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 2o97_B 5 QLIDKIAAGADISKAAAGRALDAIIA 30 (90)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57888889999997655555544433
No 266
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.37 E-value=1e+02 Score=19.08 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHhcCCcHHHHHHHH
Q 030755 112 IATMSDRLGLVATIKDRAN 130 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~ 130 (172)
...|+.+||++...+.++.
T Consensus 32 a~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 32 AISLSNRLKINKKKINQQL 50 (75)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 4578889999997777653
No 267
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.34 E-value=25 Score=19.51 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=11.6
Q ss_pred eCCCCceEeC--CCcce
Q 030755 18 DHSAGDTVCS--ECGLV 32 (172)
Q Consensus 18 D~~~G~~vC~--~CG~V 32 (172)
+...|+.+|. .||.+
T Consensus 9 ~~~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNV 25 (45)
T ss_dssp SSCSSSCBCSSTTTCCB
T ss_pred CCCCCCcCCCCCCCCCE
Confidence 4567888998 78876
No 268
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.23 E-value=41 Score=20.06 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceeEe-------CCCCc------eEeCCCcceeccc
Q 030755 4 AFCSDCKKHTEVVFD-------HSAGD------TVCSECGLVLESH 36 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D-------~~~G~------~vC~~CG~V~~e~ 36 (172)
.+|+.|+.+ |.+ ...|. ..|..|+..|.+.
T Consensus 6 ~~C~~C~~~---I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKP---ISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCC---CCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSS
T ss_pred CCCccCCCc---ccCCCCceeEEECCcccCcccCChhhCCCcCCCC
Confidence 479999973 222 12222 5799999988643
No 269
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.21 E-value=60 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH
Q 030755 111 TIATMSDRLGLVATIKDRANEIYKKV 136 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~a 136 (172)
.++.|++.+++|..+++....-++++
T Consensus 32 ~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 32 TSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46778999999998888855555443
No 270
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=24.19 E-value=1.2e+02 Score=22.77 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+....+-+++.++++|-.+.+.+.++|+.+.+.++
T Consensus 244 ~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~ 279 (296)
T 2gf2_A 244 AKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGY 279 (296)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCC
Confidence 445678889999999999999999999999988763
No 271
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=24.06 E-value=1.1e+02 Score=22.98 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|..+.+.+.++|+.+...+.
T Consensus 238 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 273 (287)
T 3pef_A 238 QKDLRLAVALGDRVGQPLVASAAANELFKGARAAGF 273 (287)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCC
Confidence 445677888899999999999999999999988764
No 272
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=24.04 E-value=19 Score=27.41 Aligned_cols=14 Identities=36% Similarity=0.926 Sum_probs=11.9
Q ss_pred CCCCceEeCCCcce
Q 030755 19 HSAGDTVCSECGLV 32 (172)
Q Consensus 19 ~~~G~~vC~~CG~V 32 (172)
+++|.+||.+|-+-
T Consensus 14 EAtGrIVCANCHLa 27 (249)
T 1ci3_M 14 EATGRIVCANCHLA 27 (249)
T ss_dssp CTTSCBGGGGTCCS
T ss_pred hhcCcEEeeccccc
Confidence 47999999999764
No 273
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.97 E-value=29 Score=23.08 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=5.0
Q ss_pred eEeCCCccee
Q 030755 24 TVCSECGLVL 33 (172)
Q Consensus 24 ~vC~~CG~V~ 33 (172)
..|.+||.++
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 3455555554
No 274
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=23.70 E-value=20 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.926 Sum_probs=11.9
Q ss_pred CCCCceEeCCCcce
Q 030755 19 HSAGDTVCSECGLV 32 (172)
Q Consensus 19 ~~~G~~vC~~CG~V 32 (172)
+++|.+||.+|-+-
T Consensus 14 EAtGrIVCANCHLA 27 (252)
T 1hcz_A 14 EATGRIVCANCHLA 27 (252)
T ss_dssp CTTSCBGGGGTCCS
T ss_pred hhcCcEEeeccccc
Confidence 47999999999764
No 275
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=23.68 E-value=20 Score=27.38 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.9
Q ss_pred CCCCceEeCCCcce
Q 030755 19 HSAGDTVCSECGLV 32 (172)
Q Consensus 19 ~~~G~~vC~~CG~V 32 (172)
+++|.+||.+|-+-
T Consensus 14 EAtGrIVCANCHLA 27 (251)
T 1e2w_A 14 EANGRIVCANCHLA 27 (251)
T ss_dssp CTTSCBGGGGTCCS
T ss_pred hhcCcEEeeccccc
Confidence 47999999999764
No 276
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=23.67 E-value=41 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.895 Sum_probs=15.8
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
.|.-||+ .. +. --...|..||.
T Consensus 18 lCrRCG~-~s--yH--~qK~~Ca~CGy 39 (94)
T 4a18_A 18 LCRRCGK-AT--YH--KQKLRCAACGY 39 (94)
T ss_dssp ECTTTCS-EE--EE--TTTTEESSSCG
T ss_pred eecCcCc-hh--hh--hccccccccCC
Confidence 5999998 33 22 23569999998
No 277
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=49 Score=20.15 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceeEeC----CCCc------eEeCCCcceecccc
Q 030755 4 AFCSDCKKHTEVVFDH----SAGD------TVCSECGLVLESHS 37 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~----~~G~------~vC~~CG~V~~e~~ 37 (172)
.+|..|+.. |.+. ..|. ..|..|+..|....
T Consensus 16 ~~C~~C~~~---I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~ 56 (82)
T 2co8_A 16 DLCALCGEH---LYVLERLCVNGHFFHRSCFRCHTCEATLWPGG 56 (82)
T ss_dssp CBCSSSCCB---CCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTS
T ss_pred CCCcccCCC---cccceEEEECCCeeCCCcCEEcCCCCCcCCCc
Confidence 479999973 2221 2232 67999999886544
No 278
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=23.28 E-value=25 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCceeEeCCC--CceEeCCCc
Q 030755 3 DAFCSDCKKHTEVVFDHSA--GDTVCSECG 30 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~--G~~vC~~CG 30 (172)
+..|+.||+ ..+....+ ...+|.-|.
T Consensus 134 l~~C~~Cgg--~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 134 LSSCNCCGG--NFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp EEECTTTCC--EEEEESSCCSSCCCCTTC-
T ss_pred eCcCCCCCC--CeeCccCCCCCCCcCCCCC
Confidence 357999997 34444333 366777776
No 279
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=23.23 E-value=1.3e+02 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|..+.+.+.++|+.+.+.+.
T Consensus 246 ~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 281 (303)
T 3g0o_A 246 VKDLGLVADTAKALRFPLPLASTALNMFTSASNAGY 281 (303)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCC
Confidence 344567888999999999999999999999988764
No 280
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=23.05 E-value=1.3e+02 Score=22.90 Aligned_cols=36 Identities=6% Similarity=-0.085 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|-.+.+.+.++|+.+...+.
T Consensus 256 ~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 291 (296)
T 3qha_A 256 EKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPH 291 (296)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCc
Confidence 444677788999999999999999999999988764
No 281
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=22.94 E-value=84 Score=20.00 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhhC
Q 030755 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQ 139 (172)
Q Consensus 109 ~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~ 139 (172)
.+.|+.++...+|+...++.+.+-+-.....
T Consensus 6 ~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~ 36 (99)
T 1owf_A 6 AEMSEYLFDKLGLSKRDAKELVELFFEEIRR 36 (99)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3578888899999976666665554444333
No 282
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=22.92 E-value=57 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.735 Sum_probs=18.6
Q ss_pred CCCCCCCCCceeEeC---CCC--ceEeCCCcceec
Q 030755 5 FCSDCKKHTEVVFDH---SAG--DTVCSECGLVLE 34 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~---~~G--~~vC~~CG~V~~ 34 (172)
.|| ||. . +.... ..| .+.|.+|-++|.
T Consensus 25 pCr-CGd-~-F~IteedLe~ge~iv~C~sCSL~Ik 56 (89)
T 2jr7_A 25 PCP-CGD-N-FSITKEDLENGEDVATCPSCSLIIK 56 (89)
T ss_dssp ECT-TSS-E-EEEEHHHHHHTCCEEECTTTCCEEE
T ss_pred cCC-CCC-E-EEECHHHHhCCCEEEECCCCccEEE
Confidence 599 996 2 44332 244 578999999995
No 283
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=22.49 E-value=86 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhC
Q 030755 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQ 139 (172)
Q Consensus 110 ~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~ 139 (172)
+.|+.+++..+|+...++.+.+-+-.....
T Consensus 5 eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~ 34 (99)
T 3c4i_A 5 ELIDVLTQKLGSDRRQATAAVENVVDTIVR 34 (99)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 577888889999976666665544444333
No 284
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=22.47 E-value=28 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCCCCCCCCce-eEeCCCCceEeCCCcceec
Q 030755 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i-~~D~~~G~~vC~~CG~V~~ 34 (172)
..|-.||+. +. -....-|..+|.+|.-|-.
T Consensus 35 ~~C~dC~~~-~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 35 ARCADCGAP-DPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp SBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CcCccCCCC-CCCeEEecccEEEhhhhchHhh
Confidence 469999984 33 3344689999999987764
No 285
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=22.31 E-value=1.3e+02 Score=22.66 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+.+..+++|..+.+.+.++|+.+.+.+.
T Consensus 238 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 273 (287)
T 3pdu_A 238 QKDLRLAVELGDRLGQPLHGAATANESFKRARAAGH 273 (287)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCC
Confidence 344666888899999999999999999999988764
No 286
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.27 E-value=31 Score=20.61 Aligned_cols=28 Identities=21% Similarity=0.651 Sum_probs=17.1
Q ss_pred CCCCCCCCCCceeEeC---CCC------ceEeCCCcceec
Q 030755 4 AFCSDCKKHTEVVFDH---SAG------DTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~~i~~D~---~~G------~~vC~~CG~V~~ 34 (172)
.+|+.|+.. |.+. ..| =..|..|+..|.
T Consensus 6 ~~C~~C~~~---I~~~~v~a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKY---ITGRVLEAGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCC---CSSCCBCCSSCCBCTTTSCCSSSCCCCC
T ss_pred CCcccCCCE---ecCeeEEeCCCCCCCCcCEeCCCCCCCC
Confidence 478888863 2221 112 247888988886
No 287
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.02 E-value=33 Score=14.97 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 030755 5 FCSDCKK 11 (172)
Q Consensus 5 ~C~~Cg~ 11 (172)
.|+.||.
T Consensus 4 ~C~~C~~ 10 (29)
T 2m0e_A 4 KCPHCDK 10 (29)
T ss_dssp CCSSCCC
T ss_pred cCCCCCc
Confidence 4666664
No 288
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=21.96 E-value=52 Score=21.64 Aligned_cols=37 Identities=5% Similarity=0.106 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Q 030755 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVED 138 (172)
Q Consensus 102 e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~ 138 (172)
+.+..+++..+..|..+|.=++--.+.+..+|++...
T Consensus 29 ~~sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~ 65 (100)
T 1vp7_A 29 PQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVE 65 (100)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567788999999999886555556777777766543
No 289
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=21.88 E-value=34 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=13.3
Q ss_pred ceEeCCCcceecccccccC
Q 030755 23 DTVCSECGLVLESHSIDET 41 (172)
Q Consensus 23 ~~vC~~CG~V~~e~~i~~~ 41 (172)
...|. ||-++..+++-.|
T Consensus 182 ~P~C~-Cgg~lrPdVV~FG 199 (290)
T 3u31_A 182 PPECP-CGGIFKPNIILFG 199 (290)
T ss_dssp SCBCT-TSCBEEEEECCBT
T ss_pred CCCCC-CCCEECCeEEEcC
Confidence 35799 9999987776544
No 290
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=21.85 E-value=1.4e+02 Score=22.53 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhCcC
Q 030755 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141 (172)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~ 141 (172)
.+-.+.+.+++..+++|..+.+.+.++|+.+.+.+.
T Consensus 247 ~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (302)
T 2h78_A 247 AKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGY 282 (302)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCC
Confidence 344667889999999999999999999999988764
No 291
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.54 E-value=63 Score=18.72 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSECG 30 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~CG 30 (172)
...|+.|+.+ .|...-.+-|..|.
T Consensus 6 ~~~C~~C~~~----~~~~~~mI~Cd~C~ 29 (64)
T 1we9_A 6 SGQCGACGES----YAADEFWICCDLCE 29 (64)
T ss_dssp CCCCSSSCCC----CCSSSCEEECSSSC
T ss_pred CCCCCCCCCc----cCCCCCEEEccCCC
Confidence 3578999873 23334466777773
No 292
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=21.51 E-value=23 Score=27.51 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=10.2
Q ss_pred CCCCceEeCCCcc
Q 030755 19 HSAGDTVCSECGL 31 (172)
Q Consensus 19 ~~~G~~vC~~CG~ 31 (172)
+++|.+||.+|-+
T Consensus 15 EAtGrIVCANCHL 27 (289)
T 1vf5_C 15 EPTGRIVCANCHL 27 (289)
T ss_dssp CTTSCBGGGGTCC
T ss_pred hhcCcEEeecccc
Confidence 4688888888865
No 293
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.50 E-value=24 Score=22.44 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=6.5
Q ss_pred CCCCCCCCC
Q 030755 3 DAFCSDCKK 11 (172)
Q Consensus 3 ~~~C~~Cg~ 11 (172)
+.+||-||+
T Consensus 8 ~~~~PlCG~ 16 (95)
T 2k5c_A 8 MAKCPICGS 16 (95)
T ss_dssp CEECSSSCC
T ss_pred cccCCcCCC
Confidence 356888886
No 294
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=55 Score=19.66 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=12.6
Q ss_pred CCceEeCCCcceeccccc
Q 030755 21 AGDTVCSECGLVLESHSI 38 (172)
Q Consensus 21 ~G~~vC~~CG~V~~e~~i 38 (172)
.....|..|+..|.+..+
T Consensus 13 ~~~~~C~~C~~~I~~~~~ 30 (81)
T 2dlo_A 13 ATLEKCATCSQPILDRIL 30 (81)
T ss_dssp SSCCBCTTTCCBCCSCCE
T ss_pred cCCCccccCCCeecceeE
Confidence 356788888888865543
No 295
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=21.26 E-value=29 Score=22.49 Aligned_cols=22 Identities=27% Similarity=0.872 Sum_probs=15.2
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcc
Q 030755 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (172)
Q Consensus 5 ~C~~Cg~~~~i~~D~~~G~~vC~~CG~ 31 (172)
.|.-||+ ... . --...|..||.
T Consensus 18 lCrRCG~-~sy--H--~qK~~Ca~CGy 39 (94)
T 3iz5_l 18 LCVRCGR-RSF--H--LQKSTCSSCGY 39 (94)
T ss_dssp ECTTTCS-EEE--E--GGGTEETTTCS
T ss_pred eecCcCc-hhh--h--cccccccccCC
Confidence 5889997 332 2 23558999998
No 296
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=21.26 E-value=31 Score=21.55 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCCCCCCCCC--ceeEeCC-CCceEeCCCcceec
Q 030755 4 AFCSDCKKHT--EVVFDHS-AGDTVCSECGLVLE 34 (172)
Q Consensus 4 ~~C~~Cg~~~--~i~~D~~-~G~~vC~~CG~V~~ 34 (172)
.+||-|.-.+ .-.+|+. .-...|..||..-+
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred eECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 5799999421 1123443 56779999998764
No 297
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=21.26 E-value=36 Score=21.81 Aligned_cols=22 Identities=18% Similarity=0.590 Sum_probs=16.6
Q ss_pred CceeEeC-CCCceEeCCCcceec
Q 030755 13 TEVVFDH-SAGDTVCSECGLVLE 34 (172)
Q Consensus 13 ~~i~~D~-~~G~~vC~~CG~V~~ 34 (172)
+.+..|. ..|+..|.-||+...
T Consensus 37 PrVyL~i~~~g~~~CpYCg~~y~ 59 (87)
T 2jz8_A 37 PHIFIDMGSTDEKICPYCSTLYR 59 (87)
T ss_dssp SSCEEECTTCCEECCTTTCCEEE
T ss_pred CEEEEEcCCCCeEECCCCCCEeE
Confidence 3455554 579999999999874
No 298
>1icw_A Interleukin-8, IL-8; cytokine, chemokine; 2.01A {Homo sapiens} SCOP: d.9.1.1 PDB: 1ikl_A* 1ikm_A* 1il8_A 1ilp_A* 1ilq_A* 2il8_A 3il8_A 1qe6_A 1rod_A
Probab=21.16 E-value=58 Score=19.65 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCCCCCCceeEeCCCCceEeCC
Q 030755 7 SDCKKHTEVVFDHSAGDTVCSE 28 (172)
Q Consensus 7 ~~Cg~~~~i~~D~~~G~~vC~~ 28 (172)
+.|.. .++|+-...|..+|.+
T Consensus 32 ~~C~~-~aVIf~tk~g~~vC~d 52 (72)
T 1icw_A 32 PHCAN-TCIIVKLSDGRELALD 52 (72)
T ss_dssp SSCSS-CEEEEEETTSCEEEEC
T ss_pred CCCCC-cEEEEEecCCCEEecC
Confidence 56776 5788888888888875
No 299
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.01 E-value=1e+02 Score=18.86 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhCcCC
Q 030755 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSS 142 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~ 142 (172)
+.+||+.|+++. .++.+.++.+.++|++
T Consensus 27 v~EIa~~lgvS~---~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 27 TRDIADAAGLSI---YQVRLYLEQLHDVGVL 54 (77)
T ss_dssp HHHHHHHHTCCH---HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHCCCH---HHHHHHHHHHHHCCcE
Confidence 788899999975 3366677777777765
No 300
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.01 E-value=1.6e+02 Score=18.33 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHhhCcCCCCC-CHHHHHHHHHHHHHHhCCCCCCccc
Q 030755 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGR-NQDALLAACLYIACRQEDKPRTVKG 170 (172)
Q Consensus 115 ~~~~L~Lp~~v~~~A~~i~~~a~~~~~~~Gr-~~~~~aAAclYiacR~~~~~~tl~e 170 (172)
+-..++++.. ...+|++.+-..+ .|+ +.+..+.+.-.++..+.|.+.+...
T Consensus 36 ~l~~~~l~~~---~l~~i~~~~D~d~--dG~i~~~EF~~~~~~~~~~~~g~~~~~~~ 87 (99)
T 1qjt_A 36 FLKKSGLPDL---ILGKIWDLADTDG--KGVLSKQEFFVALRLVACAQNGLEVSLSS 87 (99)
T ss_dssp HHHTSSSCHH---HHHHHHHHHCCSS--SSSCCSHHHHHHHHHHHHHTTTCCSSGGG
T ss_pred HHHHcCCCHH---HHHHHHHHHCCCC--CCcCCHHHHHHHHHHHHHHHcCCCCChhh
Confidence 3345688854 4556777764322 232 4567788888888889998887544
No 301
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.00 E-value=97 Score=20.35 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhCcCC-----------CCCCHHHHHHHHHHHHHH
Q 030755 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACR 160 (172)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~a~~~~~~-----------~Gr~~~~~aAAclYiacR 160 (172)
+..+++.+++|...+.+...-+++ .|++ -++.+..+--.=||-+..
T Consensus 29 ~~ela~~~~i~~~~v~~il~~L~~---~Glv~~~~g~~ggy~L~~~~~~itl~di~~~~e 85 (129)
T 2y75_A 29 LKSIAQTNNLSEHYLEQLVSPLRN---AGLVKSIRGAYGGYVLGSEPDAITAGDIIRVLE 85 (129)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHH---TTSEEEC----CCEEESSCGGGCBHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH---CCceEecCCCCCceEeCCCHHHCcHHHHHHHHc
Confidence 567899999999888886655555 3433 124555555555555543
No 302
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.82 E-value=74 Score=20.45 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCC--Ccceec
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCSE--CGLVLE 34 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~~--CG~V~~ 34 (172)
...|..|+..+ ....+|.. ||.|-=
T Consensus 25 ~~~C~~C~~~~-------~~lw~CL~~~Cg~vgC 51 (97)
T 2uzg_A 25 LGTCQDCKVQG-------PNLWACLENRCSYVGC 51 (97)
T ss_dssp TTCCSSSCCCC-------SSCEEECCTTCCCEEC
T ss_pred CCcCcCcCCCC-------CCceeeecccCCCccc
Confidence 35799999521 23579999 999963
No 303
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=20.69 E-value=39 Score=27.35 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.1
Q ss_pred eEeCCCcceecccccccC
Q 030755 24 TVCSECGLVLESHSIDET 41 (172)
Q Consensus 24 ~vC~~CG~V~~e~~i~~~ 41 (172)
..|..||-++..+++-.|
T Consensus 172 P~Cp~Cgg~lrP~VV~FG 189 (361)
T 1q14_A 172 VKCDVCGELVKPAIVFFG 189 (361)
T ss_dssp CBCTTTCCBEEEEECCBT
T ss_pred CCCcCCCCEeCCCccccc
Confidence 689999999988876655
No 304
>1b3a_A Protein (rantes); chemical protein synthesis, chemokine, HIV-1, anti-HIV protein; HET: AOP; 1.60A {Synthetic} SCOP: d.9.1.1 PDB: 1hrj_A 1rtn_A 1rto_A 1u4l_A* 1u4m_A* 2l9h_A 1u4p_A 1eqt_A 1u4r_A 2vxw_A
Probab=20.62 E-value=65 Score=19.04 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=15.6
Q ss_pred CCCCCCCceeEeCCCCceEeCC
Q 030755 7 SDCKKHTEVVFDHSAGDTVCSE 28 (172)
Q Consensus 7 ~~Cg~~~~i~~D~~~G~~vC~~ 28 (172)
+.|.. .++|+-...|..+|.+
T Consensus 31 ~~C~~-~aVIf~tk~g~~vC~d 51 (67)
T 1b3a_A 31 GKCSN-PAVVFVTRKNRQVCAN 51 (67)
T ss_dssp TTSSS-CCEEEEETTCCEEEEC
T ss_pred CCCCC-ceEEEEEcCCCEEeCC
Confidence 56775 5788887888888864
No 305
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.61 E-value=77 Score=19.44 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCcHHHHHH
Q 030755 111 TIATMSDRLGLVATIKDR 128 (172)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~ 128 (172)
.++.++..|+||+.++..
T Consensus 37 ~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp HHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 478899999999977654
No 306
>1g2s_A Eotaxin-3; beta-BETA-beta-alpha helix, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1g2t_A
Probab=20.45 E-value=64 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.809 Sum_probs=13.7
Q ss_pred CCCCCCCceeEeCCCCceEeCC
Q 030755 7 SDCKKHTEVVFDHSAGDTVCSE 28 (172)
Q Consensus 7 ~~Cg~~~~i~~D~~~G~~vC~~ 28 (172)
+.|.. .++|+-...|..+|.+
T Consensus 32 ~~C~~-~aVIf~tk~g~~vCad 52 (71)
T 1g2s_A 32 NSCSQ-RAVIFTTKRGKKVCTH 52 (71)
T ss_dssp SSSSS-CCEEEEETTSCEEEEC
T ss_pred CCCCC-cEEEEEEeCCCEEeCC
Confidence 45654 5677777777777764
No 307
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=51 Score=20.74 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeC-CCcceecccccc
Q 030755 3 DAFCSDCKKHTEVVFDHSAGDTVCS-ECGLVLESHSID 39 (172)
Q Consensus 3 ~~~C~~Cg~~~~i~~D~~~G~~vC~-~CG~V~~e~~i~ 39 (172)
...||-|.. +.. +-|.. .||.+++-..|.
T Consensus 7 ~~~CPI~~~---~~~-----dPV~~~~cGh~f~r~cI~ 36 (94)
T 2yu4_A 7 GFTCPITKE---EMK-----KPVKNKVCGHTYEEDAIV 36 (94)
T ss_dssp CCBCTTTCS---BCS-----SEEEESSSCCEEEHHHHH
T ss_pred EeECcCcCc---hhc-----CCEEcCCCCCeecHHHHH
Confidence 357999996 233 35666 599998766665
No 308
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=20.02 E-value=96 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.6
Q ss_pred ceEeCCCcceec
Q 030755 23 DTVCSECGLVLE 34 (172)
Q Consensus 23 ~~vC~~CG~V~~ 34 (172)
...|..||.+..
T Consensus 155 ~y~C~~C~~~~r 166 (335)
T 1x3z_A 155 IYKCNRCGNITR 166 (335)
T ss_dssp EEEETTTCCEEE
T ss_pred EeecCCCCcccc
Confidence 367999999875
Done!