BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030756
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869
           From Streptomyces Coelicolor
          Length = 239

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)

Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKK-DFYEN 73
           R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V         
Sbjct: 4   RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLTA 63

Query: 74  KFG-SQNQGIIARMTEVFRGLGLEYNMSGLT--------GNTLDSHRLLYLAGQQGLDKQ 124
           K+G SQ Q            LG +    GL         G+T D HRLL+LA ++G  + 
Sbjct: 64  KYGXSQEQAQAGEDN-----LGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERG--RH 116

Query: 125 HNLAEELFLGYFTQGKYI 142
             L +  + G F   + +
Sbjct: 117 EALLDAFYRGNFADERSV 134


>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 2
 pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 2
          Length = 243

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ----YDFEIRWHPFFL 56
           MAQ+++   G KL  + +S D V      GK +L  A  S+ D+    +DF I   P++ 
Sbjct: 44  MAQAIADELGVKLEILSMSFDNVLTSLQTGKADLAVAGISATDERKEVFDFSI---PYYE 100

Query: 57  N 57
           N
Sbjct: 101 N 101


>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine
           Ligase (Gsha) Ftom Francisella Tularensis In Complex
           With Amp
          Length = 525

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 54  FFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-GLGLEY 97
             LN S P    N  D  E  FGS N G   RM  V+R GL   Y
Sbjct: 110 IILNTSMPLSA-NDNDIQEADFGSSNSG---RMKRVYRKGLSARY 150


>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
           Forming) From Saccharomyces Cerevisiae
          Length = 467

 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 14/67 (20%)

Query: 2   AQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAP 61
           AQ+++  +G K I +DV+ D+           LDK +A +    D  I   P+  +P+  
Sbjct: 60  AQALAKPSGSKAISLDVTDDSA----------LDKVLADN----DVVISLIPYTFHPNVV 105

Query: 62  KEGVNKK 68
           K  +  K
Sbjct: 106 KSAIRTK 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,884,007
Number of Sequences: 62578
Number of extensions: 197155
Number of successful extensions: 321
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)