BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030756
         (172 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39598|YWBO_BACSU Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168)
           GN=ywbO PE=4 SV=1
          Length = 200

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           + I V SD VCP+CFVGK   ++AI       D E+ W PF L PS P   ++  +    
Sbjct: 3   VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRPS-PSPQLDPVNDPSK 57

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
           ++  Q    I  M E    LG+E N   ++ +             +  +K H     +F 
Sbjct: 58  QYMWQTS--IQPMAE---KLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQ 112

Query: 134 GYFTQGKYIGD 144
            +F + + IGD
Sbjct: 113 AFFQEDQNIGD 123


>sp|Q9P2E5|CHPF2_HUMAN Chondroitin sulfate glucuronyltransferase OS=Homo sapiens GN=CHPF2
           PE=2 SV=2
          Length = 772

 Score = 37.4 bits (85), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 30  GKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE- 88
           G +N D      +   DF+ R  P++ +P+ P + V +  + + + GS+ + ++A +T  
Sbjct: 51  GPQNPDSRARLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSR 110

Query: 89  -VFRGLGLEYNMSGLTGNTLDSH--RLLYLAGQQG 120
                L +  N       T+  H  RLLY  GQ+G
Sbjct: 111 ATLSTLAVAVN------RTVAHHFPRLLYFTGQRG 139


>sp|A6UKC3|KATG_SINMW Catalase-peroxidase OS=Sinorhizobium medicae (strain WSM419)
           GN=katG PE=3 SV=1
          Length = 729

 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 83  IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK 140
           +AR+  V  G+  ++N S   G  +    L+ LAG  G++K    A +  +  FT G+
Sbjct: 502 LARVLSVLEGIQRDFNASQAGGKKISLADLIVLAGNAGVEKAARAAGQEIIVPFTPGR 559


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,919,199
Number of Sequences: 539616
Number of extensions: 2780826
Number of successful extensions: 4791
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4786
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)