Query 030756
Match_columns 172
No_of_seqs 142 out of 1080
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2761 FrnE Predicted dithiol 100.0 2.3E-39 4.9E-44 247.2 16.1 152 11-163 3-158 (225)
2 cd03024 DsbA_FrnE DsbA family, 100.0 6.9E-32 1.5E-36 205.4 16.8 145 16-162 1-148 (201)
3 cd03021 DsbA_GSTK DsbA family, 100.0 1.2E-31 2.6E-36 206.0 11.4 140 15-162 2-149 (209)
4 cd03022 DsbA_HCCA_Iso DsbA fam 100.0 1.7E-29 3.6E-34 190.7 10.2 138 16-162 1-140 (192)
5 PF01323 DSBA: DSBA-like thior 100.0 3.6E-29 7.8E-34 188.9 7.9 139 15-163 1-141 (193)
6 COG3917 NahD 2-hydroxychromene 99.9 4.1E-26 8.8E-31 166.8 10.9 142 12-164 6-151 (203)
7 cd03025 DsbA_FrnE_like DsbA fa 99.9 7.9E-25 1.7E-29 165.4 14.2 136 14-162 1-142 (193)
8 COG3531 Predicted protein-disu 99.9 1.7E-23 3.6E-28 155.4 10.8 136 14-164 2-147 (212)
9 PF13743 Thioredoxin_5: Thiore 99.8 7.8E-18 1.7E-22 126.3 10.1 117 18-162 2-120 (176)
10 cd03019 DsbA_DsbA DsbA family, 99.4 1.1E-12 2.4E-17 97.5 10.7 104 11-163 14-117 (178)
11 cd03023 DsbA_Com1_like DsbA fa 99.2 2E-10 4.3E-15 83.0 11.5 101 9-162 2-102 (154)
12 cd02972 DsbA_family DsbA famil 99.0 8.2E-09 1.8E-13 68.4 9.8 42 16-59 1-42 (98)
13 PRK10954 periplasmic protein d 98.7 1E-07 2.2E-12 73.2 9.1 101 13-163 38-141 (207)
14 PF13462 Thioredoxin_4: Thiore 98.0 9.9E-06 2.1E-10 58.9 5.5 53 5-57 5-57 (162)
15 PRK11657 dsbG disulfide isomer 97.2 0.00085 1.8E-08 53.1 5.4 44 9-56 114-157 (251)
16 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0012 2.6E-08 50.0 5.3 43 10-58 75-117 (197)
17 PRK10877 protein disulfide iso 96.9 0.0023 5E-08 50.0 5.6 43 10-57 105-147 (232)
18 COG1651 DsbG Protein-disulfide 95.7 0.028 6.2E-07 43.7 5.8 49 7-58 79-127 (244)
19 cd03026 AhpF_NTD_C TRX-GRX-lik 93.6 0.23 5E-06 32.8 5.2 33 9-41 9-41 (89)
20 TIGR00412 redox_disulf_2 small 93.3 0.13 2.8E-06 32.8 3.6 28 14-42 1-28 (76)
21 TIGR00411 redox_disulf_1 small 90.5 0.48 1E-05 29.9 3.8 29 14-42 1-29 (82)
22 COG3011 Predicted thiol-disulf 90.2 0.37 8.1E-06 34.6 3.2 42 10-57 4-45 (137)
23 PRK11200 grxA glutaredoxin 1; 89.7 0.57 1.2E-05 30.3 3.7 36 14-52 1-36 (85)
24 PF03227 GILT: Gamma interfero 89.2 1.1 2.5E-05 30.5 5.0 40 14-55 1-43 (108)
25 cd02973 TRX_GRX_like Thioredox 88.6 1.5 3.2E-05 26.6 4.9 27 14-40 1-27 (67)
26 cd03027 GRX_DEP Glutaredoxin ( 88.6 0.87 1.9E-05 28.4 3.8 31 15-53 2-32 (73)
27 PF13098 Thioredoxin_2: Thiore 87.4 0.73 1.6E-05 31.0 3.1 26 11-36 4-29 (112)
28 PRK10329 glutaredoxin-like pro 86.9 1.2 2.5E-05 28.8 3.7 31 15-53 2-32 (81)
29 PF13192 Thioredoxin_3: Thiore 86.8 2.4 5.1E-05 26.8 5.1 27 14-41 1-27 (76)
30 cd03029 GRX_hybridPRX5 Glutare 86.6 1.1 2.5E-05 27.7 3.5 21 15-35 2-22 (72)
31 PRK10638 glutaredoxin 3; Provi 84.6 1.3 2.8E-05 28.4 3.1 22 15-36 3-24 (83)
32 PF00462 Glutaredoxin: Glutare 83.6 2.6 5.6E-05 25.1 4.0 31 16-54 1-31 (60)
33 cd03040 GST_N_mPGES2 GST_N fam 82.0 2.3 4.9E-05 26.6 3.4 21 15-35 1-21 (77)
34 TIGR02190 GlrX-dom Glutaredoxi 82.0 2.4 5.1E-05 27.0 3.5 24 12-35 6-29 (79)
35 PF13728 TraF: F plasmid trans 81.6 3 6.5E-05 32.2 4.6 41 12-58 120-160 (215)
36 COG3084 Uncharacterized protei 81.1 2.4 5.3E-05 27.0 3.1 39 129-167 10-48 (88)
37 cd03036 ArsC_like Arsenate Red 80.5 4.2 9.1E-05 27.8 4.6 32 16-55 1-32 (111)
38 cd03419 GRX_GRXh_1_2_like Glut 80.0 1.6 3.5E-05 27.5 2.2 22 15-36 1-22 (82)
39 TIGR02194 GlrX_NrdH Glutaredox 79.2 2.8 6E-05 26.0 3.1 30 16-53 1-30 (72)
40 cd02949 TRX_NTR TRX domain, no 79.2 4.2 9E-05 26.6 4.1 32 11-42 12-43 (97)
41 TIGR02189 GlrX-like_plant Glut 78.9 2 4.4E-05 28.8 2.5 23 14-36 8-30 (99)
42 cd03418 GRX_GRXb_1_3_like Glut 78.5 2.1 4.7E-05 26.4 2.4 22 15-36 1-22 (75)
43 PF13905 Thioredoxin_8: Thiore 78.1 9.1 0.0002 24.6 5.5 42 13-54 2-43 (95)
44 PRK13703 conjugal pilus assemb 76.3 5.3 0.00012 31.6 4.5 41 13-59 144-184 (248)
45 PF04031 Las1: Las1-like ; In 75.9 1.1 2.4E-05 32.8 0.5 28 144-171 100-127 (154)
46 TIGR02181 GRX_bact Glutaredoxi 75.6 3 6.5E-05 26.2 2.5 21 16-36 1-21 (79)
47 TIGR02200 GlrX_actino Glutared 74.0 3.5 7.6E-05 25.3 2.5 21 15-35 1-21 (77)
48 COG0695 GrxC Glutaredoxin and 73.2 3.8 8.2E-05 26.3 2.5 22 15-36 2-23 (80)
49 cd02066 GRX_family Glutaredoxi 70.6 4.7 0.0001 24.0 2.5 21 15-35 1-21 (72)
50 PHA03050 glutaredoxin; Provisi 70.1 4.6 9.9E-05 27.6 2.5 23 14-36 13-35 (108)
51 cd03055 GST_N_Omega GST_N fami 69.3 8.4 0.00018 24.9 3.6 23 11-33 14-36 (89)
52 cd03012 TlpA_like_DipZ_like Tl 69.2 12 0.00026 25.7 4.5 37 12-49 23-59 (126)
53 cd03053 GST_N_Phi GST_N family 69.1 8.2 0.00018 23.7 3.4 34 15-56 1-34 (76)
54 TIGR02739 TraF type-F conjugat 68.4 11 0.00024 30.0 4.6 41 13-59 151-191 (256)
55 TIGR02180 GRX_euk Glutaredoxin 67.9 4.4 9.5E-05 25.4 2.0 21 16-36 1-21 (84)
56 PF06288 DUF1040: Protein of u 67.7 6.1 0.00013 25.7 2.5 38 130-167 11-48 (86)
57 TIGR01295 PedC_BrcD bacterioci 66.8 9.5 0.00021 26.5 3.6 28 13-40 24-51 (122)
58 TIGR02183 GRXA Glutaredoxin, G 66.7 6.9 0.00015 25.3 2.7 22 16-37 2-23 (86)
59 PF04134 DUF393: Protein of un 64.8 6.6 0.00014 26.6 2.5 32 18-55 1-32 (114)
60 cd03041 GST_N_2GST_N GST_N fam 64.5 10 0.00023 23.6 3.2 20 16-35 2-21 (77)
61 TIGR00365 monothiol glutaredox 63.7 7.8 0.00017 25.8 2.6 22 15-36 13-39 (97)
62 cd03045 GST_N_Delta_Epsilon GS 63.7 9.9 0.00022 23.2 3.0 32 16-55 1-32 (74)
63 smart00501 BRIGHT BRIGHT, ARID 63.3 13 0.00028 24.4 3.6 70 82-168 6-76 (93)
64 TIGR02196 GlrX_YruB Glutaredox 63.1 7.6 0.00016 23.2 2.3 20 16-35 2-21 (74)
65 PHA01976 helix-turn-helix prot 62.3 7.1 0.00015 23.7 2.1 29 135-163 34-62 (67)
66 cd01659 TRX_superfamily Thiore 61.9 19 0.00041 19.8 3.9 35 16-53 1-35 (69)
67 smart00389 HOX Homeodomain. DN 61.1 11 0.00025 21.7 2.8 34 129-163 12-45 (56)
68 PF00578 AhpC-TSA: AhpC/TSA fa 60.4 13 0.00027 25.0 3.3 37 13-50 26-63 (124)
69 PF08534 Redoxin: Redoxin; In 60.2 14 0.00031 25.8 3.6 40 12-52 29-68 (146)
70 COG2844 GlnD UTP:GlnB (protein 57.4 19 0.00042 33.3 4.6 42 127-169 532-573 (867)
71 cd02968 SCO SCO (an acronym fo 57.1 35 0.00075 23.5 5.2 32 12-43 22-54 (142)
72 cd03051 GST_N_GTT2_like GST_N 57.1 17 0.00037 21.8 3.2 32 16-55 1-32 (74)
73 PF13496 DUF4120: Domain of un 56.5 4.9 0.00011 26.4 0.6 25 8-33 35-59 (95)
74 smart00530 HTH_XRE Helix-turn- 55.9 16 0.00036 19.7 2.8 26 136-161 30-55 (56)
75 cd00086 homeodomain Homeodomai 55.7 16 0.00035 21.2 2.8 34 129-163 12-45 (59)
76 cd02966 TlpA_like_family TlpA- 55.2 38 0.00082 21.6 4.9 31 12-42 19-49 (116)
77 cd02961 PDI_a_family Protein D 54.7 27 0.00059 21.9 4.1 28 14-41 17-44 (101)
78 PRK13344 spxA transcriptional 54.6 20 0.00043 25.4 3.6 32 16-55 2-33 (132)
79 KOG3160 Gamma-interferon induc 54.5 40 0.00086 26.3 5.4 43 12-55 39-82 (220)
80 PRK12759 bifunctional gluaredo 54.4 11 0.00023 32.1 2.5 22 15-36 3-24 (410)
81 PHA01083 hypothetical protein 54.1 11 0.00023 27.5 2.0 30 135-164 35-65 (149)
82 cd03056 GST_N_4 GST_N family, 53.5 21 0.00046 21.4 3.2 33 16-56 1-33 (73)
83 cd08319 Death_RAIDD Death doma 53.1 61 0.0013 21.1 6.7 67 84-163 14-80 (83)
84 PF00085 Thioredoxin: Thioredo 52.5 41 0.0009 21.4 4.7 31 13-43 18-48 (103)
85 PF13560 HTH_31: Helix-turn-he 52.5 12 0.00025 22.6 1.8 29 135-163 33-62 (64)
86 cd03032 ArsC_Spx Arsenate Redu 51.9 25 0.00053 24.0 3.6 31 16-54 2-32 (115)
87 cd02977 ArsC_family Arsenate R 51.7 20 0.00044 23.8 3.1 31 16-54 1-31 (105)
88 cd03037 GST_N_GRX2 GST_N famil 51.6 18 0.0004 21.9 2.7 30 17-54 2-31 (71)
89 PRK12559 transcriptional regul 51.4 29 0.00063 24.5 4.0 32 16-55 2-33 (131)
90 PRK01655 spxA transcriptional 51.3 22 0.00047 25.1 3.3 31 16-54 2-32 (131)
91 PRK09381 trxA thioredoxin; Pro 51.3 33 0.00071 22.6 4.1 32 12-43 21-52 (109)
92 PF11287 DUF3088: Protein of u 50.1 9.3 0.0002 26.4 1.2 30 22-55 22-52 (112)
93 cd03028 GRX_PICOT_like Glutare 49.7 18 0.00039 23.5 2.5 22 15-36 9-35 (90)
94 PF11672 DUF3268: Protein of u 49.6 37 0.0008 23.1 4.0 39 125-164 63-101 (102)
95 TIGR03143 AhpF_homolog putativ 49.3 34 0.00074 30.1 4.9 38 11-51 475-512 (555)
96 PF12096 DUF3572: Protein of u 49.0 9.9 0.00021 25.2 1.1 26 142-167 56-81 (88)
97 TIGR01068 thioredoxin thioredo 49.0 28 0.00061 22.1 3.4 29 14-42 16-44 (101)
98 cd02971 PRX_family Peroxiredox 49.0 28 0.0006 23.9 3.6 37 12-49 23-59 (140)
99 cd03035 ArsC_Yffb Arsenate Red 48.9 26 0.00056 23.7 3.3 32 16-55 1-32 (105)
100 cd02995 PDI_a_PDI_a'_C PDIa fa 48.8 48 0.001 21.2 4.6 31 13-43 19-49 (104)
101 TIGR03140 AhpF alkyl hydropero 48.8 36 0.00078 29.6 4.9 31 11-41 116-146 (515)
102 TIGR01617 arsC_related transcr 48.6 23 0.00049 24.3 3.0 31 16-54 1-31 (117)
103 PF02630 SCO1-SenC: SCO1/SenC; 48.4 19 0.00042 26.5 2.8 50 10-60 50-100 (174)
104 cd03033 ArsC_15kD Arsenate Red 48.4 28 0.00061 23.9 3.4 32 16-55 2-33 (113)
105 TIGR02187 GlrX_arch Glutaredox 48.0 49 0.0011 25.1 5.1 30 11-40 132-161 (215)
106 cd00570 GST_N_family Glutathio 48.0 31 0.00067 19.8 3.3 18 17-34 2-19 (71)
107 cd02976 NrdH NrdH-redoxin (Nrd 46.8 22 0.00047 21.1 2.5 21 15-35 1-21 (73)
108 PF12844 HTH_19: Helix-turn-he 46.8 12 0.00027 22.3 1.3 29 134-162 30-58 (64)
109 PRK09726 antitoxin HipB; Provi 46.6 32 0.0007 22.2 3.4 29 135-163 44-72 (88)
110 cd02969 PRX_like1 Peroxiredoxi 45.3 50 0.0011 23.8 4.6 44 11-57 24-67 (171)
111 PRK15317 alkyl hydroperoxide r 44.8 45 0.00097 29.0 4.9 30 11-40 115-144 (517)
112 PF11470 TUG-UBL1: GLUT4 regul 44.2 20 0.00043 22.2 1.9 22 145-166 20-41 (65)
113 cd03059 GST_N_SspA GST_N famil 43.9 33 0.00071 20.6 3.0 32 16-55 1-32 (73)
114 smart00099 btg1 tob/btg1 famil 43.8 14 0.0003 25.5 1.3 28 143-170 65-94 (108)
115 PF00046 Homeobox: Homeobox do 43.7 17 0.00038 21.1 1.6 33 130-163 13-45 (57)
116 TIGR01126 pdi_dom protein disu 43.1 53 0.0011 20.9 4.1 32 11-42 12-43 (102)
117 cd03017 PRX_BCP Peroxiredoxin 42.7 39 0.00084 23.2 3.5 37 12-49 24-60 (140)
118 PRK09437 bcp thioredoxin-depen 42.7 35 0.00077 24.1 3.4 37 12-49 31-67 (154)
119 cd00340 GSH_Peroxidase Glutath 42.2 62 0.0013 22.9 4.6 35 13-49 23-57 (152)
120 PF15616 TerY-C: TerY-C metal 42.1 11 0.00024 26.8 0.6 15 15-29 96-113 (131)
121 PRK05932 RNA polymerase factor 41.9 34 0.00073 29.6 3.6 37 124-160 322-358 (455)
122 TIGR03070 couple_hipB transcri 41.8 44 0.00095 18.9 3.2 24 135-158 34-57 (58)
123 PF14026 DUF4242: Protein of u 41.8 26 0.00056 22.4 2.2 21 142-162 54-74 (77)
124 cd02947 TRX_family TRX family; 41.8 45 0.00097 20.3 3.5 28 13-40 11-38 (93)
125 cd03060 GST_N_Omega_like GST_N 41.7 40 0.00088 20.4 3.1 17 17-33 2-18 (71)
126 PF00165 HTH_AraC: Bacterial r 41.7 12 0.00027 20.5 0.6 20 141-160 4-23 (42)
127 TIGR02395 rpoN_sigma RNA polym 41.5 33 0.00072 29.4 3.5 37 124-160 297-333 (429)
128 PF01381 HTH_3: Helix-turn-hel 41.4 16 0.00034 21.0 1.1 26 136-161 29-54 (55)
129 PRK10824 glutaredoxin-4; Provi 41.2 27 0.00058 24.2 2.4 15 22-36 28-42 (115)
130 cd02998 PDI_a_ERp38 PDIa famil 41.1 71 0.0015 20.4 4.5 29 14-42 20-48 (105)
131 PF01388 ARID: ARID/BRIGHT DNA 41.1 91 0.002 20.1 4.9 68 80-164 8-76 (92)
132 KOG1752 Glutaredoxin and relat 40.4 29 0.00063 23.6 2.4 22 14-35 14-35 (104)
133 PRK13890 conjugal transfer pro 40.2 1.2E+02 0.0027 20.9 5.7 26 135-160 37-62 (120)
134 cd03003 PDI_a_ERdj5_N PDIa fam 40.0 56 0.0012 21.1 3.8 30 13-42 19-48 (101)
135 cd02967 mauD Methylamine utili 40.0 63 0.0014 21.2 4.1 30 13-42 22-51 (114)
136 KOG2425 Nuclear protein involv 39.9 15 0.00031 32.1 1.1 24 148-171 125-148 (599)
137 PF07742 BTG: BTG family; Int 39.0 16 0.00035 25.5 1.0 27 144-170 68-96 (118)
138 cd03018 PRX_AhpE_like Peroxire 38.9 52 0.0011 22.9 3.7 36 13-49 30-65 (149)
139 PRK09706 transcriptional repre 38.6 30 0.00065 24.3 2.4 28 135-162 37-64 (135)
140 PLN02412 probable glutathione 38.2 60 0.0013 23.6 4.1 37 13-50 30-66 (167)
141 PRK03147 thiol-disulfide oxido 38.0 54 0.0012 23.4 3.8 31 13-43 62-92 (173)
142 cd03001 PDI_a_P5 PDIa family, 37.4 72 0.0016 20.4 4.0 30 13-42 19-48 (103)
143 TIGR02187 GlrX_arch Glutaredox 37.2 75 0.0016 24.1 4.6 32 11-42 18-52 (215)
144 cd02965 HyaE HyaE family; HyaE 37.0 51 0.0011 22.7 3.3 32 12-43 28-60 (111)
145 COG3793 TerB Tellurite resista 36.8 85 0.0019 22.8 4.4 24 139-162 119-142 (144)
146 COG1124 DppF ABC-type dipeptid 36.8 30 0.00064 27.5 2.3 45 124-169 98-143 (252)
147 cd02956 ybbN ybbN protein fami 36.6 76 0.0016 20.1 4.0 31 12-42 12-42 (96)
148 cd02975 PfPDO_like_N Pyrococcu 36.1 98 0.0021 20.8 4.6 29 13-41 22-51 (113)
149 PF04967 HTH_10: HTH DNA bindi 35.9 32 0.0007 20.4 1.8 32 127-162 9-40 (53)
150 PRK06424 transcription factor; 35.9 54 0.0012 23.7 3.4 29 134-162 115-143 (144)
151 PRK10606 btuE putative glutath 35.8 1.9E+02 0.004 21.6 7.0 39 13-53 26-64 (183)
152 cd02950 TxlA TRX-like protein 35.7 99 0.0022 21.8 4.8 31 13-43 21-51 (142)
153 cd02970 PRX_like2 Peroxiredoxi 35.6 63 0.0014 22.2 3.7 36 13-49 25-60 (149)
154 PF04552 Sigma54_DBD: Sigma-54 35.5 12 0.00027 27.5 0.0 38 124-161 28-65 (160)
155 PF04487 CITED: CITED; InterP 35.4 16 0.00035 28.2 0.6 21 139-159 163-183 (214)
156 PF05347 Complex1_LYR: Complex 35.2 94 0.002 18.1 5.3 31 124-154 22-52 (59)
157 PRK12469 RNA polymerase factor 35.1 47 0.001 29.0 3.4 37 124-160 348-384 (481)
158 PF05605 zf-Di19: Drought indu 35.0 15 0.00033 21.5 0.3 18 21-39 2-19 (54)
159 PF13417 GST_N_3: Glutathione 34.8 94 0.002 18.9 4.1 30 18-55 1-30 (75)
160 PF02977 CarbpepA_inh: Carboxy 34.5 14 0.00031 21.2 0.1 9 21-29 21-29 (46)
161 cd00093 HTH_XRE Helix-turn-hel 34.3 55 0.0012 17.6 2.8 26 136-161 32-57 (58)
162 PF14338 Mrr_N: Mrr N-terminal 33.3 65 0.0014 21.0 3.2 39 125-163 3-41 (92)
163 COG1393 ArsC Arsenate reductas 33.1 1.1E+02 0.0024 21.1 4.5 69 86-155 17-88 (117)
164 cd03002 PDI_a_MPD1_like PDI fa 33.0 78 0.0017 20.5 3.7 30 13-42 19-48 (109)
165 cd02952 TRP14_like Human TRX-r 32.9 74 0.0016 22.1 3.6 31 12-42 22-58 (119)
166 PF05768 DUF836: Glutaredoxin- 32.9 50 0.0011 20.9 2.6 24 15-38 1-24 (81)
167 KOG1706 Argininosuccinate synt 32.0 1E+02 0.0022 25.6 4.6 50 46-101 126-176 (412)
168 cd02957 Phd_like Phosducin (Ph 31.6 1.5E+02 0.0032 19.7 5.0 30 13-42 25-54 (113)
169 PF03470 zf-XS: XS zinc finger 31.3 17 0.00038 20.6 0.2 8 24-31 1-8 (43)
170 TIGR02740 TraF-like TraF-like 31.0 1.4E+02 0.003 23.8 5.3 41 12-58 166-206 (271)
171 cd03009 TryX_like_TryX_NRX Try 30.8 1.3E+02 0.0028 20.4 4.6 39 13-51 19-58 (131)
172 cd03031 GRX_GRX_like Glutaredo 30.5 68 0.0015 23.2 3.2 21 15-35 1-27 (147)
173 cd02989 Phd_like_TxnDC9 Phosdu 30.4 1.5E+02 0.0032 20.0 4.8 30 13-42 23-52 (113)
174 PF14595 Thioredoxin_9: Thiore 30.1 1.4E+02 0.003 21.0 4.6 39 11-52 40-78 (129)
175 KOG3425 Uncharacterized conser 30.1 74 0.0016 22.5 3.1 31 13-43 27-64 (128)
176 TIGR02826 RNR_activ_nrdG3 anae 29.8 42 0.00091 24.2 2.0 18 12-29 14-34 (147)
177 PRK09430 djlA Dna-J like membr 29.4 1.2E+02 0.0026 24.2 4.7 40 122-161 127-167 (267)
178 PTZ00051 thioredoxin; Provisio 29.3 1.5E+02 0.0033 18.7 4.6 29 13-41 19-47 (98)
179 PF07098 DUF1360: Protein of u 29.3 20 0.00043 24.5 0.2 8 22-29 58-65 (105)
180 cd03004 PDI_a_ERdj5_C PDIa fam 29.1 1.2E+02 0.0027 19.5 4.1 29 14-42 21-49 (104)
181 PF14255 Cys_rich_CPXG: Cystei 29.0 21 0.00046 21.1 0.2 8 22-29 1-8 (52)
182 PF07862 Nif11: Nitrogen fixat 29.0 52 0.0011 18.7 2.0 22 142-163 26-47 (49)
183 PF05099 TerB: Tellurite resis 28.7 1.1E+02 0.0023 21.2 4.0 43 121-163 93-136 (140)
184 cd03042 GST_N_Zeta GST_N famil 28.0 85 0.0018 18.6 3.0 32 17-56 2-33 (73)
185 cd02997 PDI_a_PDIR PDIa family 26.7 1.3E+02 0.0028 19.1 3.9 29 14-42 19-47 (104)
186 TIGR02540 gpx7 putative glutat 26.3 1.1E+02 0.0024 21.6 3.7 36 14-50 24-59 (153)
187 PF12345 DUF3641: Protein of u 26.2 1.2E+02 0.0025 21.8 3.6 45 88-135 15-59 (134)
188 PF10668 Phage_terminase: Phag 26.1 32 0.0007 21.0 0.7 29 130-162 11-39 (60)
189 cd03015 PRX_Typ2cys Peroxiredo 25.7 91 0.002 22.6 3.3 35 14-49 32-66 (173)
190 PF01316 Arg_repressor: Argini 25.5 40 0.00087 21.2 1.1 30 139-168 16-45 (70)
191 PF07345 DUF1476: Domain of un 25.4 18 0.00039 24.7 -0.5 45 123-170 47-94 (103)
192 COG4391 Uncharacterized protei 25.4 24 0.00051 21.7 0.0 7 22-28 49-55 (62)
193 PF03811 Zn_Tnp_IS1: InsA N-te 25.3 26 0.00056 19.0 0.2 9 21-29 5-13 (36)
194 TIGR02607 antidote_HigA addict 25.2 91 0.002 19.1 2.8 26 136-161 38-63 (78)
195 PF11869 DUF3389: Protein of u 25.0 77 0.0017 20.3 2.3 20 140-159 55-74 (75)
196 cd02982 PDI_b'_family Protein 24.9 1.9E+02 0.0042 18.4 4.8 37 13-51 13-49 (103)
197 PF13746 Fer4_18: 4Fe-4S diclu 24.6 23 0.00049 22.1 -0.2 8 22-29 4-11 (69)
198 PRK13728 conjugal transfer pro 24.0 1.3E+02 0.0028 22.6 3.8 26 16-41 73-98 (181)
199 PLN02399 phospholipid hydroper 23.8 1.6E+02 0.0034 23.1 4.3 37 14-51 101-137 (236)
200 PF13443 HTH_26: Cro/C1-type H 23.7 92 0.002 18.2 2.5 27 136-162 31-57 (63)
201 COG4943 Predicted signal trans 23.6 4.8E+02 0.01 23.1 7.4 20 32-55 271-290 (524)
202 PF04225 OapA: Opacity-associa 23.6 48 0.0011 21.5 1.3 31 142-172 7-44 (85)
203 PF01667 Ribosomal_S27e: Ribos 23.5 33 0.00072 20.6 0.4 11 18-28 4-14 (55)
204 PF12029 DUF3516: Domain of un 23.5 4E+02 0.0086 23.2 6.9 68 91-169 194-276 (461)
205 PF06080 DUF938: Protein of un 23.2 2.5E+02 0.0055 21.6 5.2 70 24-98 115-188 (204)
206 cd03049 GST_N_3 GST_N family, 23.1 70 0.0015 19.2 1.9 15 17-31 2-16 (73)
207 PF08298 AAA_PrkA: PrkA AAA do 23.1 80 0.0017 26.5 2.7 27 20-52 150-177 (358)
208 PF03691 UPF0167: Uncharacteri 23.1 31 0.00066 25.9 0.2 11 21-31 49-59 (176)
209 COG4311 SoxD Sarcosine oxidase 22.9 31 0.00067 23.1 0.2 8 22-29 4-11 (97)
210 cd03050 GST_N_Theta GST_N fami 22.7 1.1E+02 0.0025 18.5 2.9 33 16-56 1-33 (76)
211 PF08281 Sigma70_r4_2: Sigma-7 21.9 90 0.002 17.7 2.1 31 127-163 14-44 (54)
212 cd02964 TryX_like_family Trypa 21.9 2.6E+02 0.0057 19.0 4.9 40 13-52 18-58 (132)
213 PF13223 DUF4031: Protein of u 21.9 80 0.0017 20.6 2.0 19 145-163 23-41 (83)
214 TIGR01565 homeo_ZF_HD homeobox 21.8 77 0.0017 19.1 1.8 20 143-162 30-49 (58)
215 PF04405 ScdA_N: Domain of Unk 21.8 51 0.0011 19.7 1.0 17 146-162 32-48 (56)
216 COG0526 TrxA Thiol-disulfide i 21.7 1.2E+02 0.0027 18.7 3.0 28 14-42 35-62 (127)
217 PTZ00056 glutathione peroxidas 21.6 1.9E+02 0.0042 21.7 4.4 36 12-49 40-75 (199)
218 PF04592 SelP_N: Selenoprotein 21.5 1.2E+02 0.0026 23.9 3.2 48 7-54 21-68 (238)
219 PRK10174 hypothetical protein; 21.2 1.1E+02 0.0023 19.2 2.3 22 130-155 37-58 (75)
220 cd02993 PDI_a_APS_reductase PD 21.2 2.2E+02 0.0048 18.6 4.3 30 13-42 22-51 (109)
221 PF00051 Kringle: Kringle doma 21.1 31 0.00067 21.9 -0.1 9 20-29 56-64 (79)
222 PF12244 DUF3606: Protein of u 21.1 74 0.0016 19.0 1.6 23 140-162 15-37 (57)
223 PF12085 DUF3562: Protein of u 21.0 60 0.0013 20.2 1.2 19 144-162 6-24 (66)
224 KOG4080 Mitochondrial ribosoma 20.8 67 0.0015 23.9 1.6 20 20-39 105-124 (176)
225 PTZ00256 glutathione peroxidas 20.5 1.9E+02 0.0041 21.2 4.1 33 16-49 45-77 (183)
No 1
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.3e-39 Score=247.21 Aligned_cols=152 Identities=38% Similarity=0.702 Sum_probs=141.4
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCC--cHHHHHHHHHH
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTE 88 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 88 (172)
+.+++|++|+|++|||||+|+++|++++.+|++...++|+||||.|.|..++.|.+.++++..+||. +.+.+..++++
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~~ 82 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEE 82 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHHH
Confidence 5679999999999999999999999999999888899999999999999988899999999999997 44777889999
Q ss_pred HHHhcCCccccCCC--CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 89 VFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 89 ~a~~~Gi~~~~~~~--~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.++..|+.|+++.. .+||+.||+++++|+.+|+ .+.+|+++||+|||++|+||+|.+||.+||+++|||.+++.
T Consensus 83 ~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~ 158 (225)
T COG2761 83 LAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK 158 (225)
T ss_pred hhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence 99999999999874 5999999999999999997 69999999999999999999999999999999999987543
No 2
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=100.00 E-value=6.9e-32 Score=205.35 Aligned_cols=145 Identities=41% Similarity=0.760 Sum_probs=127.3
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCC--cHHHHHHHHHHHHHhc
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGL 93 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~ 93 (172)
|++|+|++|||||+|.++|++++++|+.+.+++|+|+||.|.++.+..|......+..+++. +...+..+++++++.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~ 80 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE 80 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999887533479999999999999888777766777776665 4455667999999999
Q ss_pred CCccccCCCC-CChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 94 GLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 94 Gi~~~~~~~~-~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
|++|++++.+ .||..||+++.+|+++|. ..+|.++||+++|.+|+||+++++|.++|+++|||++.+
T Consensus 81 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~ 148 (201)
T cd03024 81 GLEFDFDRVRPPNTFDAHRLIHLAKEQGK--QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEA 148 (201)
T ss_pred CCcccCCCCccCCcHHHHHHHHHHhccCc--HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 9999988764 599999999999988876 899999999999999999999999999999999998643
No 3
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=99.97 E-value=1.2e-31 Score=206.03 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=115.4
Q ss_pred eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHhcC
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLG 94 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~G 94 (172)
+|+||||++|||||+|+++|+++++. .+++|+||||.|+|.++.+|......... +.+++.++++++++.+|
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~----~~v~i~~~P~~L~~~~~~~g~~~~~~~~~----k~~~~~~~~~~~a~~~G 73 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTA----WNVDITYVPVFLGGIMKDSGNKPPIMLPN----KAKYMAKDRKRSAEFFG 73 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHH----hCCeEEEEeeehhHHHhccCCCCcccCch----HHHHHHHHHHHHHHHhC
Confidence 69999999999999999999998863 57999999999999876655432221111 45778999999999999
Q ss_pred CccccCCC----CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHH----HHHHHhcCCCcccc
Q 030756 95 LEYNMSGL----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAY----FSFDEFFFFFPSLV 162 (172)
Q Consensus 95 i~~~~~~~----~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL----~~ia~~~Gld~~~~ 162 (172)
++|++++. +.||..|||++.+|++.|.+...++.+++|++||.+|.||+++.++ .++|+++|||++..
T Consensus 74 l~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~ 149 (209)
T cd03021 74 VPIRQPKDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQA 149 (209)
T ss_pred CCCCCCCCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccH
Confidence 99998764 4899999999999988776323679999999999999999966555 79999999986543
No 4
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.96 E-value=1.7e-29 Score=190.73 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=113.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCC-CHHHHHHHHhCCcHHHHHHHHHHHHHhcC
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV-NKKDFYENKFGSQNQGIIARMTEVFRGLG 94 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~a~~~G 94 (172)
|+||+|++|||||+|.++|+++.+++ +++|+|+||.|++..+..|. +....... +..++..++.++++.+|
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~----~~~i~~~p~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~g 72 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARH----GATVRYRPILLGGVFKATGNVPPANRPPA----KGRYRLRDLERWARRYG 72 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHh----CCeeEEeeeeHHHHHHHhCCCCCcccccH----HHHHHHHHHHHHHHHcC
Confidence 68999999999999999999988754 69999999999885433322 11111111 23567788999999999
Q ss_pred CccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 95 LEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 95 i~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
++|++++. +.||..|++++.+|+.+| +...++.++||+++|.+|+||+|+++|.+++.++|||++.+
T Consensus 73 ~~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~ 140 (192)
T cd03022 73 IPLRFPPRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADEL 140 (192)
T ss_pred CCCCCCCCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 99998764 479999999999998888 33899999999999999999999999999999999998643
No 5
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=99.96 E-value=3.6e-29 Score=188.89 Aligned_cols=139 Identities=28% Similarity=0.513 Sum_probs=112.5
Q ss_pred eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCC-CCCHHHHHHHHhCCcHHHHHHHHHHHHHhc
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRGL 93 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 93 (172)
+|++|+|+.|||||+++++|+++++++. +++|+|+||.|.+..+.. +.+..+ ... +.+++.+++.++++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~---~~~i~~~p~~l~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~a~~~ 72 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP---DVEIEWRPFPLRPDMRRSGGAPPAE-DPA----KAEYMFQDLERWARRY 72 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT---TCEEEEEEESSSTHHHHCT-SCGCG-SHH----HHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCcEEEeccccccccccCCCCCccc-Chh----HHHHHHHHHHHHHHHh
Confidence 6999999999999999999999998762 699999999998874322 222222 111 3567789999999999
Q ss_pred CCccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 94 Gi~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
|+++++++. +.+|..|++++.+++.+|. ..++.+++|+++|.+|+||+|+++|.++++++|+|++++.
T Consensus 73 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~ 141 (193)
T PF01323_consen 73 GIPFNFPPPFPGNSRPAHRAAYAAQEQGK--ADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFD 141 (193)
T ss_dssp T--TBTSSTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHH
T ss_pred cCcccCCchhhhhhHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHH
Confidence 999998865 2599999999999999884 8999999999999999999999999999999999987543
No 6
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=4.1e-26 Score=166.78 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=118.6
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCC--CHHHHHHHHhCCcHHHHHHHHHHH
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV--NKKDFYENKFGSQNQGIIARMTEV 89 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 89 (172)
...+|+|||||.|||+|++.++|..+.+. ++..|.|||..|+.++..+|+ +..... . .-++...+++|+
T Consensus 6 ~~ktIef~fdf~SP~ayL~~~~~~~laq~----~ga~v~~rP~llg~vfk~tG~~~Pl~~~~-~----~~dY~~~d~~R~ 76 (203)
T COG3917 6 MNKTIEFYFDFSSPYAYLAWPRLPALAQA----YGAAVALRPILLGGVFKATGNGVPLIKTP-Q----PGDYITLDLKRE 76 (203)
T ss_pred CCceeEEEEecCCchHHhhhhhhHHHHHH----cCCceEEEeeeeceeEeecCCCCcccccC-C----CCceehHHHHHH
Confidence 34569999999999999999999998875 578999999999998877764 222111 1 125678899999
Q ss_pred HHhcCCccccCCC-CCChHHHHHHHHHHh-hcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccccc
Q 030756 90 FRGLGLEYNMSGL-TGNTLDSHRLLYLAG-QQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNI 164 (172)
Q Consensus 90 a~~~Gi~~~~~~~-~~~s~~A~r~~~~a~-~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~ 164 (172)
++++|+|+.++.. +.||.-+.|+++++. ..+. ..+|+++++++.|.+|+|+++|||+..+|.++|||+.++..
T Consensus 77 akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g~~--a~~~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A 151 (203)
T COG3917 77 AKRHGLPLRFPRHFPPNTLGAARAMIALAMGGGL--AEQFAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLA 151 (203)
T ss_pred HHHcCCccccCCCCCCchHHHHHHHHHHHhccch--HHHHHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHh
Confidence 9999999988875 589999999998853 3444 89999999999999999999999999999999999986543
No 7
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.93 E-value=7.9e-25 Score=165.40 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=109.2
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-h
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-G 92 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~ 92 (172)
++|++|+|++|||||++.++|+++.++|+ .+++|+|+++.|.+.....+.... .....++.++++ .
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~--~~~~v~~~~~~L~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 67 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYG--GGIEVELHLGGLLPGNNARQITKQ-----------WRIYVHWHKARIAL 67 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhC--CCceEEEEeccccCCCCCCCcchH-----------HHHHHhHHHHHHHh
Confidence 47999999999999999999999998873 379999998887765432211111 122344555566 8
Q ss_pred cCCccccCCC-----CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 93 LGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 93 ~Gi~~~~~~~-----~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
.|++++.+.. +.+|..|++++.+|+.+|++....|.+++|+++|.+|+||++.++|.++++++|+|++.+
T Consensus 68 ~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~ 142 (193)
T cd03025 68 TGQPFGEDYLELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEF 142 (193)
T ss_pred cCCccCchhHhcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 8999887642 357999999999999888766899999999999999999999999999999999998754
No 8
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=155.42 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=109.3
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCC-CCCHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRG 92 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 92 (172)
++++|+|||+|.|||.+.+.++++.+ .-+++|++||-.|.++-... +..++ .+...+.+++++.
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~----~~gl~~~L~~GGl~aG~r~pl~~~~r-----------~~i~~hd~rIa~l 66 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSA----QPGLEVVLHGGGLRAGNRRPLDPAFR-----------AYILPHDQRIAQL 66 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHh----cCCceEEEecCCccCCCCCCCChHHH-----------HHhhhhHHHHHHH
Confidence 57999999999999999999998765 23899999998776552111 11222 2345677888899
Q ss_pred cCCcccc---C------CCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 93 LGLEYNM---S------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 93 ~Gi~~~~---~------~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.|.||.. + +...||.+|++++.+|+..+.+....++++|++|||+||+||.+.+||.++|.+.||++++.+
T Consensus 67 TGqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl~~laa~~GL~~~~f~ 146 (212)
T COG3531 67 TGQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVLAELAAAIGLAAEEFD 146 (212)
T ss_pred hCCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHHHHHHHHcCCCHHHHH
Confidence 9999951 1 245899999999999998776655899999999999999999999999999999999987654
Q ss_pred c
Q 030756 164 I 164 (172)
Q Consensus 164 ~ 164 (172)
.
T Consensus 147 ~ 147 (212)
T COG3531 147 N 147 (212)
T ss_pred H
Confidence 3
No 9
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.75 E-value=7.8e-18 Score=126.26 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=79.0
Q ss_pred EEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHhcCCcc
Q 030756 18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEY 97 (172)
Q Consensus 18 ~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gi~~ 97 (172)
+|.||+|+|||...+.+.++..+|+. .+++++.|+.+.++.... +.. .+++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~~~~~~~---~~~-----------------------~~~~~ 53 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLMPDINDF---MPR-----------------------MPING 53 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS-S--SB-----H---------------------------T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccchHHHHHH---HHh-----------------------cCCCH
Confidence 79999999999999999999998864 689999998776653221 000 11111
Q ss_pred --ccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 98 --NMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 98 --~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
..+....+|.+|+++++||+.+|++++.+|+.+|+++++.+|+|+++.++|.++|+++|||.+..
T Consensus 54 ~~~~~~~~~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F 120 (176)
T PF13743_consen 54 DFWRNEPRSSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMF 120 (176)
T ss_dssp THHHS--BS--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHH
T ss_pred HHhcCCCCCCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHH
Confidence 12334578999999999999999988999999999999999999999999999999999998744
No 10
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.45 E-value=1.1e-12 Score=97.52 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=82.8
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF 90 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 90 (172)
..+++|.+|+|+.||||+-.++.+.+++.+++ .++.++++|+.+....
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~------------------------------ 61 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP--KDVKFEKVPVVFGGGE------------------------------ 61 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC--CCceEEEcCCcccccc------------------------------
Confidence 45789999999999999999999999998774 3688888887543210
Q ss_pred HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
+..+.++..++...|. ..+|..++|++.|.++.++++.++|.+++.++|+|.+.+.
T Consensus 62 ---------------~~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~ 117 (178)
T cd03019 62 ---------------GEPLARAFYAAEALGL--EDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFD 117 (178)
T ss_pred ---------------chHHHHHHHHHHHcCc--HhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 1223455555555665 7789999999999999999999999999999999886543
No 11
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.23 E-value=2e-10 Score=82.95 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=70.4
Q ss_pred cCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHH
Q 030756 9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE 88 (172)
Q Consensus 9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (172)
+...+++|.+|+|+.||||+-..+.+.++..+++ ++.|.++++.+...
T Consensus 2 ~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~p~~~~----------------------------- 49 (154)
T cd03023 2 NPNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEFPILGE----------------------------- 49 (154)
T ss_pred CCCCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeCCccCc-----------------------------
Confidence 4457899999999999999999999998777654 47888887743211
Q ss_pred HHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 89 ~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
++..+++++.++...+++..++|.+++|+ ++ ++.+.++|.++++++|+|.+.+
T Consensus 50 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~lf~----~~-~~~~~~~l~~~a~~~gl~~~~~ 102 (154)
T cd03023 50 ----------------SSVLAARVALAVWKNGPGKYLEFHNALMA----TR-GRLNEESLLRIAKKAGLDEAKL 102 (154)
T ss_pred ----------------chHHHHHHHHHHHHhChhHHHHHHHHHHh----cC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 01122344444443444446677777765 33 4678899999999999998643
No 12
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.98 E-value=8.2e-09 Score=68.35 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=35.7
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCC
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~ 59 (172)
|++|+|+.|||||.+.+.+.+++... ..+++++|+|+.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~ 42 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD--DGGVRVVYRPFPLLGG 42 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc--CCcEEEEEeccccCCC
Confidence 57999999999999999999986443 3589999999987764
No 13
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.71 E-value=1e-07 Score=73.17 Aligned_cols=101 Identities=10% Similarity=-0.035 Sum_probs=67.0
Q ss_pred ceeEEEEEecCCcchhhhHHHH---HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHH
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV 89 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L---~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (172)
+.+|..|||+.||+|+-..+.+ +.+.+.+++ ++.++..|+.+.+. +...
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~~f~~~-------~~~~------------------- 89 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHVEFLGP-------LGKE------------------- 89 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecccccch-------hhHH-------------------
Confidence 4679999999999999887755 555555543 55665555432210 0000
Q ss_pred HHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 90 a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
+.++..+|+..|. ..++..++|++++. ++++.+.+.|.+++++.|+|++.++
T Consensus 90 -------------------~~~a~~~a~~~~~--~~k~~~~lf~~i~~-~~~~~~~~~L~~~a~~~Gld~~~f~ 141 (207)
T PRK10954 90 -------------------LTQAWAVAMALGV--EDKVTPPLFEGVQK-TQTIQSAADIRDVFIKAGVKGEDYD 141 (207)
T ss_pred -------------------HHHHHHHHHHhCc--HHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 1122223344444 45678889999854 6799999999999999999986543
No 14
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.04 E-value=9.9e-06 Score=58.93 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=42.5
Q ss_pred cCCccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756 5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN 57 (172)
Q Consensus 5 ~~~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~ 57 (172)
++..++..+++|+.|+|+.||+|.-.+..+.++++++-+.-.+.+.++|+.+.
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 45566778999999999999999999999999999883344799999988433
No 15
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.16 E-value=0.00085 Score=53.07 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=33.9
Q ss_pred cCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756 9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (172)
Q Consensus 9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L 56 (172)
+...+.+|.+|+|+.||||--.+..+.+++. .-+++|+|.|+.+
T Consensus 114 ~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~----~g~V~v~~ip~~~ 157 (251)
T PRK11657 114 KADAPRIVYVFADPNCPYCKQFWQQARPWVD----SGKVQLRHILVGI 157 (251)
T ss_pred CCCCCeEEEEEECCCChhHHHHHHHHHHHhh----cCceEEEEEeccc
Confidence 3456788999999999999987777776554 2358888888643
No 16
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.07 E-value=0.0012 Score=50.05 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP 58 (172)
Q Consensus 10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~ 58 (172)
...+.+|.+|+|+.||||.-.+..+.+ . ..++.|.+++|.+..
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~-~-----~~~v~v~~~~~p~~~ 117 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP-N-----ADGVTVRIFPVPILG 117 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh-c-----cCceEEEEEEcCcCC
Confidence 346789999999999999988877765 1 247899999886544
No 17
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.90 E-value=0.0023 Score=50.04 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=33.3
Q ss_pred CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN 57 (172)
Q Consensus 10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~ 57 (172)
...+.+|.+|+|+.||||--.+..+.++.. .+++|.+.+|.+.
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-----~~v~v~~~~~P~~ 147 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA-----LGITVRYLAFPRQ 147 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc-----CCeEEEEEeccCC
Confidence 356788999999999999988877776542 3688888776553
No 18
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.028 Score=43.75 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=32.9
Q ss_pred CccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756 7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP 58 (172)
Q Consensus 7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~ 58 (172)
-.+...+++|..|+|+.||||=-....+.+ .+-....+.+.+++|.+.+
T Consensus 79 ~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~---~~i~~~~~~~~~~~~~f~~ 127 (244)
T COG1651 79 LGNPYAPVTVVEFFDYTCPYCKEAFPELKK---KYIDDGKVRLVLREFPFLD 127 (244)
T ss_pred ccCCCCCceEEEEecCcCccHHHHHHHHHH---HhhhcCCCceEEEEeecCC
Confidence 334455889999999999999444444444 3333346678888886544
No 19
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.65 E-value=0.23 Score=32.79 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=28.8
Q ss_pred cCCcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
....+++|.+|.++.||||=...+.++++.+.+
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~ 41 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLN 41 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC
Confidence 356789999999999999999999999888755
No 20
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=93.35 E-value=0.13 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=24.6
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
++|+||+ .-||+|-...+.+++++++++
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcC
Confidence 3689988 999999999999999998764
No 21
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=90.48 E-value=0.48 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.611 Sum_probs=25.6
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
++|++|+.+-||+|--..+.|+++.++++
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~ 29 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEMG 29 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHhc
Confidence 47899999999999999999999887663
No 22
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=90.19 E-value=0.37 Score=34.58 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN 57 (172)
Q Consensus 10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~ 57 (172)
.|++..+.++||-.||.|..-.+.|.+. ..+-.+++.+....
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q~e 45 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQSE 45 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEeccCc
Confidence 4566778999999999999866665542 12445666665443
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=89.73 E-value=0.57 Score=30.26 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=27.0
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEe
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~ 52 (172)
++|++|+=+.||||--+.+.|+++..++ .++.++.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~i 36 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYV 36 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEE
Confidence 4799999999999999999888765432 24555544
No 24
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=89.20 E-value=1.1 Score=30.54 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred eeEEEEEecCCcchh-hhHHHHHHHH--HhcCCCCceEEEEeeee
Q 030756 14 IRIDVSSDTVCPWCF-VGKRNLDKAI--ASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 14 ~~I~~~~D~~CPwcy-l~~~~L~~~~--~~~~~~~~~~v~~~p~~ 55 (172)
++|++|+...||.|- .-...|..++ ..+. .-++|+++||.
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~--~~~~l~lvP~G 43 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLS--DIMNLTLVPFG 43 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhcc--ceEEEEEEEEe
Confidence 579999999999994 3355566544 3343 36899999996
No 25
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=88.63 E-value=1.5 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=22.6
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~ 40 (172)
++|.+|+-.-||||--+.+.|+++...
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAVQAANRIAAL 27 (67)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 478999999999999888888877553
No 26
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.58 E-value=0.87 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=23.5
Q ss_pred eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p 53 (172)
+|++|+-+.||||.-+...|++ .++.++++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~d 32 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLRE--------KGLPYVEIN 32 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHH--------CCCceEEEE
Confidence 5889999999999987776663 366666553
No 27
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=87.39 E-value=0.73 Score=30.97 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHH
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
..+..|-+|+|+-||||--..+.+.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 45677889999999999988777774
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=86.88 E-value=1.2 Score=28.82 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=23.1
Q ss_pred eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p 53 (172)
+|++|+-..||||-.+...|.+ .++.++...
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~id 32 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES--------RGFDFEMIN 32 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH--------CCCceEEEE
Confidence 6899999999999987766643 356655543
No 29
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=86.78 E-value=2.4 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.6
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
++|.+ +...||+|-.....+.+++..+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHT
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhc
Confidence 57888 6777999999999999888764
No 30
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.63 E-value=1.1 Score=27.74 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=18.2
Q ss_pred eEEEEEecCCcchhhhHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~ 35 (172)
+|.+|+=..||||--+...|.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~ 22 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQ 22 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHH
Confidence 588999999999998877665
No 31
>PRK10638 glutaredoxin 3; Provisional
Probab=84.58 E-value=1.3 Score=28.40 Aligned_cols=22 Identities=23% Similarity=0.733 Sum_probs=18.2
Q ss_pred eEEEEEecCCcchhhhHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
+|++|+-..||||--+...|++
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~ 24 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNS 24 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHH
Confidence 6889999999999987766653
No 32
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=83.62 E-value=2.6 Score=25.07 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=23.2
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|.+|+-..||||--+...|++ .+++.+++-+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv 31 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDV 31 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEG
T ss_pred cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEccc
Confidence 678999999999987777653 3666666544
No 33
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.03 E-value=2.3 Score=26.56 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=16.6
Q ss_pred eEEEEEecCCcchhhhHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~ 35 (172)
+|++|+...||||.-....|.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHH
Confidence 578999999999997665444
No 34
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=82.02 E-value=2.4 Score=26.95 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.0
Q ss_pred cceeEEEEEecCCcchhhhHHHHH
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~ 35 (172)
...+|++|+=..||||--+...|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~ 29 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLK 29 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHH
Confidence 456799999999999998777665
No 35
>PF13728 TraF: F plasmid transfer operon protein
Probab=81.64 E-value=3 Score=32.19 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=31.7
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP 58 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~ 58 (172)
...-+-||++.-||+|-...+.|..+..+ ++++| .|+.+++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~----yg~~v--~~vs~DG 160 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADK----YGFSV--IPVSLDG 160 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHH----hCCEE--EEEecCC
Confidence 45668899999999999999999887764 46666 5566654
No 36
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.06 E-value=2.4 Score=27.04 Aligned_cols=39 Identities=10% Similarity=-0.022 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccccccc
Q 030756 129 EELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHE 167 (172)
Q Consensus 129 ~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~~~~ 167 (172)
-.|...+|...-|++-...|..+|.++|++....++-++
T Consensus 10 lellqp~w~k~~dlnl~q~lqkla~eagf~~~l~dltdd 48 (88)
T COG3084 10 IELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDD 48 (88)
T ss_pred HHHhhHHhccCCCccHHHHHHHHHHHhcccccHHHccch
Confidence 346677899999999999999999999999887766554
No 37
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=80.54 E-value=4.2 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=24.3
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
|++|+-+.||+|--+...|++ .+++++++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDE--------HGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHH--------cCCceEEeccc
Confidence 579999999999988776663 36777776553
No 38
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=80.01 E-value=1.6 Score=27.48 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=18.1
Q ss_pred eEEEEEecCCcchhhhHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
+|.+|+-.-||||--+...|.+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~ 22 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKE 22 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHH
Confidence 4789999999999987766654
No 39
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=79.19 E-value=2.8 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=21.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p 53 (172)
|++|+=..||||.-+...|.+ .++.++.+-
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~d 30 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE--------HGIAFEEIN 30 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------CCCceEEEE
Confidence 568999999999987776653 356665543
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=79.18 E-value=4.2 Score=26.65 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.8
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+..+-+|+..-||+|--..+.++++.++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~ 43 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD 43 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999887764
No 41
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=78.93 E-value=2 Score=28.78 Aligned_cols=23 Identities=30% Similarity=0.350 Sum_probs=18.8
Q ss_pred eeEEEEEecCCcchhhhHHHHHH
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
.+|.+|+=+.||||--+...|.+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH
Confidence 46899999999999987776553
No 42
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=78.46 E-value=2.1 Score=26.42 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=18.2
Q ss_pred eEEEEEecCCcchhhhHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
+|.+|+-..||||--+...|.+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHH
Confidence 4789999999999987776653
No 43
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=78.06 E-value=9.1 Score=24.62 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=32.3
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
++.+-+|+..-||-|--..+.|.++.++|++..+++|.+.+.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 456778889999999999999999999997434677766544
No 44
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=76.32 E-value=5.3 Score=31.62 Aligned_cols=41 Identities=5% Similarity=-0.115 Sum_probs=32.0
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~ 59 (172)
..-+-|||.--||+|--..+.|..+.++| +++| .|+.+++.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v--~~VS~DG~ 184 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSV--IPVSVDGV 184 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHh----CCeE--EEEecCCC
Confidence 35688999999999999999998877654 5655 67777553
No 45
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=75.90 E-value=1.1 Score=32.84 Aligned_cols=28 Identities=25% Similarity=0.123 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhcCCCccccccccccccC
Q 030756 144 DKCAYFSFDEFFFFFPSLVNINHELTHL 171 (172)
Q Consensus 144 d~~vL~~ia~~~Gld~~~~~~~~~~~~~ 171 (172)
....+..+|+++|||.-.++++|+.||=
T Consensus 100 ~a~si~~~A~~iglP~~lVdlRH~~TH~ 127 (154)
T PF04031_consen 100 YARSIASLAKEIGLPSWLVDLRHEATHG 127 (154)
T ss_pred hhhhHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 3457899999999999999999999983
No 46
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=75.57 E-value=3 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=17.2
Q ss_pred EEEEEecCCcchhhhHHHHHH
Q 030756 16 IDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~ 36 (172)
|++|+-..||||--+...|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH
Confidence 578999999999987776653
No 47
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=73.98 E-value=3.5 Score=25.34 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=17.3
Q ss_pred eEEEEEecCCcchhhhHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~ 35 (172)
+|.+|+-..||+|.-....|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~ 21 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLD 21 (77)
T ss_pred CEEEEECCCChhHHHHHHHHH
Confidence 478999999999998666554
No 48
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=73.22 E-value=3.8 Score=26.35 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=18.2
Q ss_pred eEEEEEecCCcchhhhHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
.|++|+=+.||||--+.+.|.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~ 23 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR 23 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH
Confidence 5789999999999988777663
No 49
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=70.55 E-value=4.7 Score=24.02 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=16.9
Q ss_pred eEEEEEecCCcchhhhHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~ 35 (172)
+|.+|+-..||+|--+...|.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~ 21 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLE 21 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHH
Confidence 377899999999998666555
No 50
>PHA03050 glutaredoxin; Provisional
Probab=70.11 E-value=4.6 Score=27.62 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=18.4
Q ss_pred eeEEEEEecCCcchhhhHHHHHH
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
-+|.+|+=..||||--+...|.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHH
Confidence 46899999999999876666553
No 51
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=69.33 E-value=8.4 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=17.5
Q ss_pred CcceeEEEEEecCCcchhhhHHH
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRN 33 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~ 33 (172)
..+..+++|+-..||||+-....
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~ 36 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLV 36 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHH
Confidence 34566899999999999964433
No 52
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=69.18 E-value=12 Score=25.71 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=28.6
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
.++.|-+|+-.-||.|=...+.|.++.++|++ .++.|
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~v 59 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVV 59 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEE
Confidence 35566677788999999999999999998864 35554
No 53
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=69.12 E-value=8.2 Score=23.74 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=21.9
Q ss_pred eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L 56 (172)
++++|+.+.||+|+...-.|. . .+++++.+++.+
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~----~----~~i~~~~~~~~~ 34 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLE----E----KGVDYELVPVDL 34 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHH----H----cCCCcEEEEeCc
Confidence 368999999999986444333 2 255566555543
No 54
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=68.36 E-value=11 Score=30.03 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=31.4
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~ 59 (172)
..-+-||+.--||+|--..+.|..+..+ ++++| .|+.+++.
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~----ygi~v--~~VS~DG~ 191 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKE----YGISV--IPISVDGT 191 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHH----hCCeE--EEEecCCC
Confidence 4668899999999999999998887764 46666 56666543
No 55
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=67.94 E-value=4.4 Score=25.42 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.1
Q ss_pred EEEEEecCCcchhhhHHHHHH
Q 030756 16 IDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~ 36 (172)
|.+|+-.-||||--+.+.|.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~ 21 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAK 21 (84)
T ss_pred CEEEECCCChhHHHHHHHHHH
Confidence 468999999999987776664
No 56
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=67.66 E-value=6.1 Score=25.73 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccccccc
Q 030756 130 ELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHE 167 (172)
Q Consensus 130 al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~~~~ 167 (172)
.+..-+|.+..|++--+.|..++.++|+++...++.++
T Consensus 11 ELL~p~Wqk~pDLnL~Q~LqkLa~eag~~~~l~~LtDd 48 (86)
T PF06288_consen 11 ELLQPAWQKEPDLNLMQFLQKLAQEAGFDGPLEDLTDD 48 (86)
T ss_dssp HHTHHHHHSSTTS-HHHHHHHHHHHTT-SS-TTS--HH
T ss_pred HHhhHHHhcCCcccHHHHHHHHHHhcCCCCchhhccHH
Confidence 35567899999999999999999999999887665543
No 57
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=66.82 E-value=9.5 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.5
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~ 40 (172)
...|-+|+-.-||||-...+.|.++.++
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~ 51 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQ 51 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence 3458889999999999999999998875
No 58
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=66.71 E-value=6.9 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEEecCCcchhhhHHHHHHH
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKA 37 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~ 37 (172)
|.+|+=..||||--+...|+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKL 23 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHh
Confidence 6789999999999988887764
No 59
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=64.85 E-value=6.6 Score=26.55 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 18 ~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
++||-.||+|--....+.+. ...-.|++.|+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~------d~~~~l~~~~~~ 32 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRR------DRGGRLRFVDIQ 32 (114)
T ss_pred CEECCCCHhHHHHHHHHHhc------CCCCCEEEEECC
Confidence 58999999999877776652 123467777763
No 60
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=64.52 E-value=10 Score=23.64 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.1
Q ss_pred EEEEEecCCcchhhhHHHHH
Q 030756 16 IDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~ 35 (172)
|++|+...||||.-....|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLT 21 (77)
T ss_pred ceEecCCCCchHHHHHHHHH
Confidence 57899999999996444433
No 61
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.71 E-value=7.8 Score=25.79 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=15.5
Q ss_pred eEEEEEe-----cCCcchhhhHHHHHH
Q 030756 15 RIDVSSD-----TVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D-----~~CPwcyl~~~~L~~ 36 (172)
+|-+|.= +.||||.-+...|.+
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~ 39 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKA 39 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHH
Confidence 4556654 789999987766653
No 62
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=63.68 E-value=9.9 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=20.4
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
+++|+.+.||+|.-....| +. .+++++.+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l----~~----~gi~~e~~~i~ 32 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTA----KA----LGLELNLKEVN 32 (74)
T ss_pred CEEEeCCCCCcHHHHHHHH----HH----cCCCCEEEEec
Confidence 4689999999999544333 32 25555555544
No 63
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=63.35 E-value=13 Score=24.39 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCccccCCCC-CChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756 82 IIARMTEVFRGLGLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 82 ~~~~l~~~a~~~Gi~~~~~~~~-~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~ 160 (172)
+...+.+.-+..|.++...+.. +.+.+-.++..++...|. ..+.. ....-.+|++++|+++.
T Consensus 6 F~~~L~~F~~~~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG--~~~v~---------------~~~~W~~Va~~lg~~~~ 68 (93)
T smart00501 6 FLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGG--YDQVT---------------KDKKWKEIARELGIPDT 68 (93)
T ss_pred HHHHHHHHHHHcCCcCCcCCeECCEeCcHHHHHHHHHHccC--HHHHc---------------CCCCHHHHHHHhCCCcc
Confidence 4455666666779888655543 667778888888887776 33221 12335788899999876
Q ss_pred cccccccc
Q 030756 161 LVNINHEL 168 (172)
Q Consensus 161 ~~~~~~~~ 168 (172)
......+|
T Consensus 69 ~~~~~~~l 76 (93)
T smart00501 69 STSAASSL 76 (93)
T ss_pred cchHHHHH
Confidence 44444444
No 64
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=63.12 E-value=7.6 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.5
Q ss_pred EEEEEecCCcchhhhHHHHH
Q 030756 16 IDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~ 35 (172)
|++|+-.-||+|--..+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~ 21 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT 21 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH
Confidence 78999999999998665554
No 65
>PHA01976 helix-turn-helix protein
Probab=62.32 E-value=7.1 Score=23.65 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=24.8
Q ss_pred HhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 135 YFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 135 ~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
-|+.|....+.+.+..+|+.+|++++.+-
T Consensus 34 ~~e~g~~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 34 DFEADKRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 37888888899999999999999987653
No 66
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=61.95 E-value=19 Score=19.77 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=23.2
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p 53 (172)
|.+|+...||+|......+.+. + +. ..++.+....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~-~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LL-NKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hh-CCCcEEEEEE
Confidence 3567788999999988888875 2 21 2355555543
No 67
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=61.14 E-value=11 Score=21.70 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 129 EELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 129 ~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
..+.+.+|..+..+ +.+.+.+++.++|++...+.
T Consensus 12 ~~~L~~~f~~~~~P-~~~~~~~la~~~~l~~~qV~ 45 (56)
T smart00389 12 LEELEKEFQKNPYP-SREEREELAAKLGLSERQVK 45 (56)
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHHHCcCHHHHH
Confidence 44556667777654 88999999999999876543
No 68
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=60.37 E-value=13 Score=25.03 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred ceeEEEEEec-CCcchhhhHHHHHHHHHhcCCCCceEEE
Q 030756 13 LIRIDVSSDT-VCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (172)
Q Consensus 13 ~~~I~~~~D~-~CPwcyl~~~~L~~~~~~~~~~~~~~v~ 50 (172)
+..|-+|+.. -||.|....+.|.++..+|++ .+++|.
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi 63 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVI 63 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEE
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEee
Confidence 3444444555 999999999999998888763 356553
No 69
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=60.23 E-value=14 Score=25.81 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.1
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEe
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~ 52 (172)
+++-|.+|...-||.|-...+.|.++.+.|++ .++++...
T Consensus 29 k~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v 68 (146)
T PF08534_consen 29 KPVVVNFWASAWCPPCRKELPYLNELQEKYKD-KGVDVVGV 68 (146)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-CceEEEEe
Confidence 44556666666999999999999998777654 35666543
No 70
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.42 E-value=19 Score=33.33 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccccccccc
Q 030756 127 LAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELT 169 (172)
Q Consensus 127 ~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~~~~~~ 169 (172)
+-+.|--....+-+||+||+|+.+.|++++ |...++.=.-||
T Consensus 532 Ve~HLlMS~tAQrrDl~Dp~vI~~Fa~~Vq-~~~rL~~L~~LT 573 (867)
T COG2844 532 VENHLLMSVTAQRRDLNDPKVIDAFAEAVQ-DEERLRYLLVLT 573 (867)
T ss_pred HHHHHHhHHHHHhcCCCChHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 344455566778899999999999999999 887766554444
No 71
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=57.13 E-value=35 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=25.6
Q ss_pred cceeEEEEEecCCcc-hhhhHHHHHHHHHhcCC
Q 030756 12 KLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKD 43 (172)
Q Consensus 12 ~~~~I~~~~D~~CPw-cyl~~~~L~~~~~~~~~ 43 (172)
.+..|-+|+..-||+ |-...+.|.++.++|++
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 355677777799998 98888999998888864
No 72
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=57.05 E-value=17 Score=21.81 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=20.1
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
+++|+.+.||||.-..-.|.. .+++.+.+.+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~--------~~l~~~~~~v~ 32 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAE--------KGIDVPLVTVD 32 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHH--------cCCCceEEEee
Confidence 368889999999965444332 24555555544
No 73
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=56.55 E-value=4.9 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=19.9
Q ss_pred ccCCcceeEEEEEecCCcchhhhHHH
Q 030756 8 SAGKKLIRIDVSSDTVCPWCFVGKRN 33 (172)
Q Consensus 8 ~~~~~~~~I~~~~D~~CPwcyl~~~~ 33 (172)
+++.-+.+|++|+|+. ||||+...+
T Consensus 35 ~n~~~~ceIELY~DfA-pySFgF~e~ 59 (95)
T PF13496_consen 35 KNPNHPCEIELYYDFA-PYSFGFAER 59 (95)
T ss_pred hCCCCCeEEEEEeccC-ccccceeEE
Confidence 5666789999999986 999985543
No 74
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=55.87 E-value=16 Score=19.74 Aligned_cols=26 Identities=8% Similarity=-0.141 Sum_probs=21.4
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756 136 FTQGKYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 136 ~~eg~disd~~vL~~ia~~~Gld~~~ 161 (172)
|..|....+.+.+..+++.+|++++.
T Consensus 30 ~~~~~~~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 30 IENGKRKPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred HHCCCCCCCHHHHHHHHHHhCCChhh
Confidence 56777666999999999999998764
No 75
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=55.73 E-value=16 Score=21.15 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 129 EELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 129 ~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
..+.+++|..+. --+.+.+.++|.++||+...+.
T Consensus 12 ~~~Le~~f~~~~-~P~~~~~~~la~~~~l~~~qV~ 45 (59)
T cd00086 12 LEELEKEFEKNP-YPSREEREELAKELGLTERQVK 45 (59)
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHCcCHHHHH
Confidence 445566666654 5678889999999999887654
No 76
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=55.16 E-value=38 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=25.2
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
.+..|-+|+..-||.|-.....+.++..+++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~ 49 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK 49 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhC
Confidence 4566777778899999999999998888764
No 77
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=54.70 E-value=27 Score=21.89 Aligned_cols=28 Identities=11% Similarity=-0.010 Sum_probs=23.2
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
..+-+|+..-||+|--..+.+.++.+.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 44 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKEL 44 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHh
Confidence 5566777788999999999999887766
No 78
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.65 E-value=20 Score=25.36 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.6
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
|++|+-+.||+|--+...|++ .+++++.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~--------~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA--------HQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH--------cCCCeEEEECC
Confidence 789999999999988877663 47777777664
No 79
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=54.48 E-value=40 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.2
Q ss_pred cceeEEEEEecCCcchhh-hHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 12 KLIRIDVSSDTVCPWCFV-GKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl-~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
+++.|++|+--.||+|=- -...|-.+..... ..-++++++||.
T Consensus 39 ~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~-~~~idl~lvPfG 82 (220)
T KOG3160|consen 39 PKVNITLYYEALCPDCSKFIRNQLYPFFDNLL-PSILDLTLVPFG 82 (220)
T ss_pred CeeEEEEEEEecCccHHHHHHHHHHHHHhhcc-cceeEEEEEccC
Confidence 489999999999999953 2334444444311 136889999997
No 80
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=54.36 E-value=11 Score=32.06 Aligned_cols=22 Identities=23% Similarity=0.603 Sum_probs=18.7
Q ss_pred eEEEEEecCCcchhhhHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~ 36 (172)
+|++|+-+.||||--+.+-|.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHH
Confidence 5899999999999987776654
No 81
>PHA01083 hypothetical protein
Probab=54.08 E-value=11 Score=27.50 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=24.6
Q ss_pred HhcCC-CCCCCHHHHHHHHHhcCCCcccccc
Q 030756 135 YFTQG-KYIGDKCAYFSFDEFFFFFPSLVNI 164 (172)
Q Consensus 135 ~~~eg-~disd~~vL~~ia~~~Gld~~~~~~ 164 (172)
-|..| +..-+.+....+|+.+|+||..+-+
T Consensus 35 ~~R~G~r~~i~de~A~~LAe~aGiDp~eall 65 (149)
T PHA01083 35 KMRTGVRTYISDEEAIFLAESAGIDPEIALL 65 (149)
T ss_pred HHHcCCCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 46889 8888888899999999999975443
No 82
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=53.52 E-value=21 Score=21.42 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=20.6
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L 56 (172)
+++|+.+.||+|....-.|. . .+++++.+.+.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~----~----~~~~~~~~~i~~ 33 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLA----L----LGIPYEWVEVDI 33 (73)
T ss_pred CEEEeCCCCccHHHHHHHHH----H----cCCCcEEEEecC
Confidence 36788999999996443333 2 255666555543
No 83
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=53.13 E-value=61 Score=21.06 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 84 ARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 84 ~~l~~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.+++.+|+..|++-. -+...+...++...+=+..++..+=.....=+..+.|...+.++|+|++...
T Consensus 14 ~~W~~Lar~Lgls~~-------------~I~~i~~~~p~~l~eQv~~mL~~W~~r~G~~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 14 PEWEQVLLDLGLSQT-------------DIYRCKENHPHNVQSQIVEALVKWRQRFGKKATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred hhHHHHHHHcCCCHH-------------HHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHcCCCHHHHH
Confidence 566777888887532 1122222222212223333333333332345678899999999999988654
No 84
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=52.49 E-value=41 Score=21.39 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=25.2
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~ 43 (172)
...|-+|+..-||.|-...+.+.++.+.++.
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~ 48 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKD 48 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEeCCCCCccccccceeccccccccc
Confidence 4556666667999999999999999988764
No 85
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=52.46 E-value=12 Score=22.59 Aligned_cols=29 Identities=7% Similarity=-0.061 Sum_probs=21.3
Q ss_pred HhcCCCC-CCCHHHHHHHHHhcCCCccccc
Q 030756 135 YFTQGKY-IGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 135 ~~~eg~d-isd~~vL~~ia~~~Gld~~~~~ 163 (172)
.++.|+. .-+.+.+..+++.+|+++++.+
T Consensus 33 ~iE~G~~~~p~~~~l~~l~~~l~~~~~~~~ 62 (64)
T PF13560_consen 33 RIERGRRPRPSPDTLQRLARALGVPPDERA 62 (64)
T ss_dssp HHHTTSSSS-BHHHHHHHHHHTT--HHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence 3477888 6899999999999999987653
No 86
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.91 E-value=25 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=24.1
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|++|+-+.||+|=-+...|++ .+++++++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~--------~gi~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE--------HQIPFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH--------CCCceEEEec
Confidence 789999999999987776653 3677777655
No 87
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=51.71 E-value=20 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=22.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|++|+-+.||+|=-+...|++ .+++++.+-+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi 31 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE--------HGIEYEFIDY 31 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH--------cCCCcEEEee
Confidence 578999999999987766653 3666666544
No 88
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=51.59 E-value=18 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 17 DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 17 ~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
.+|+...||+|.-..- ++.. .++.++.++.
T Consensus 2 ~Ly~~~~~p~~~rvr~----~L~~----~gl~~~~~~~ 31 (71)
T cd03037 2 KLYIYEHCPFCVKARM----IAGL----KNIPVEQIIL 31 (71)
T ss_pred ceEecCCCcHhHHHHH----HHHH----cCCCeEEEEC
Confidence 4788899999995433 3332 2566666543
No 89
>PRK12559 transcriptional regulator Spx; Provisional
Probab=51.38 E-value=29 Score=24.49 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
|++|+-+.||+|--+...|++ .++.++.+-+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~--------~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE--------NQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH--------cCCCeEEEEee
Confidence 789999999999988877664 36776666554
No 90
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=51.31 E-value=22 Score=25.07 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=23.5
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|++|+-+.||+|--+...|++ .++.++.+-+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~--------~gi~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE--------HDIPFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH--------cCCCcEEeec
Confidence 789999999999987766653 3666666544
No 91
>PRK09381 trxA thioredoxin; Provisional
Probab=51.31 E-value=33 Score=22.61 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=25.3
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~ 43 (172)
....|-.|+-+-||.|-...+.++++.+.+++
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~ 52 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG 52 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC
Confidence 34456677777999999999999998887753
No 92
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.13 E-value=9.3 Score=26.45 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=21.8
Q ss_pred cCCcchhhhHHHHHHHHHhcCC-CCceEEEEeeee
Q 030756 22 TVCPWCFVGKRNLDKAIASSKD-QYDFEIRWHPFF 55 (172)
Q Consensus 22 ~~CPwcyl~~~~L~~~~~~~~~-~~~~~v~~~p~~ 55 (172)
+.||.|-. ++-+++.|+. +..++|++.+|.
T Consensus 22 f~Cp~c~~----iEGlLa~~P~l~~~ldV~rV~f~ 52 (112)
T PF11287_consen 22 FYCPHCAA----IEGLLASFPDLRERLDVRRVDFP 52 (112)
T ss_pred EECCchHH----HHhHHhhChhhhhcccEEEeCCC
Confidence 78999986 6666666654 247889887773
No 93
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=49.71 E-value=18 Score=23.48 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=15.3
Q ss_pred eEEEEEe-----cCCcchhhhHHHHHH
Q 030756 15 RIDVSSD-----TVCPWCFVGKRNLDK 36 (172)
Q Consensus 15 ~I~~~~D-----~~CPwcyl~~~~L~~ 36 (172)
+|.+|+- +.||||--+.+.|..
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~ 35 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQ 35 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHH
Confidence 4566654 689999987766653
No 94
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.56 E-value=37 Score=23.12 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccccc
Q 030756 125 HNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNI 164 (172)
Q Consensus 125 ~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~ 164 (172)
...+.++|+..|..+ .++..+...=+|.++|+++++--|
T Consensus 63 R~~ah~~fd~lw~~~-~~~R~~aY~wLA~~lgi~~~~cHi 101 (102)
T PF11672_consen 63 RKAAHRAFDPLWQSG-HMSRSDAYRWLAKKLGIPVEECHI 101 (102)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHcCCChHhccc
Confidence 345677888888855 677889999999999999876544
No 95
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=49.31 E-value=34 Score=30.11 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=29.4
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~ 51 (172)
..+++|++|.-+.||||--+...+++++...+ +++.+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~ 512 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEM 512 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEE
Confidence 45788999999999999998888888776432 455544
No 96
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=49.05 E-value=9.9 Score=25.18 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCccccccccc
Q 030756 142 IGDKCAYFSFDEFFFFFPSLVNINHE 167 (172)
Q Consensus 142 isd~~vL~~ia~~~Gld~~~~~~~~~ 167 (172)
++|...|..+|++.|++|+.+..+++
T Consensus 56 ~~de~~l~af~~a~~~~p~~v~~Ar~ 81 (88)
T PF12096_consen 56 LMDEAWLLAFCDAAGIPPEAVAAARQ 81 (88)
T ss_pred HcchHHHHHHHHHcCcChhHHHHHHH
Confidence 47889999999999999998776654
No 97
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=49.04 E-value=28 Score=22.07 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=22.7
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+-+|+-.-|+.|....+.+.++.+.+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~ 44 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYE 44 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhc
Confidence 44556667899999999999988877664
No 98
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=48.95 E-value=28 Score=23.93 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=27.1
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+++-|.+|...-||+|--..+.|.++.++|.. .++.|
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~ 59 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEV 59 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEE
Confidence 44556666688899999999999998887742 24544
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=48.94 E-value=26 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=24.2
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
|++|+-+.|+.|--+...|++ .+++++++-+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~--------~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA--------RGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------cCCCeEEEecc
Confidence 579999999999988777664 36777766553
No 100
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=48.81 E-value=48 Score=21.23 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=24.7
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~ 43 (172)
+..+-+|+.+-|++|-...+.++++.+.+..
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 49 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKG 49 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcC
Confidence 3456677788899999999999998887653
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=48.79 E-value=36 Score=29.61 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=25.8
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
..+++|++|.-+.||||=-+...+.++....
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 3578899999999999998888888776643
No 102
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.57 E-value=23 Score=24.27 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|++|+-+.||+|--+...|++ .+++++++-+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi 31 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEA--------NGIEYQFIDI 31 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------cCCceEEEec
Confidence 578999999999987776653 3677766654
No 103
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=48.43 E-value=19 Score=26.54 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCcceeEEEEEecCCc-chhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCC
Q 030756 10 GKKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60 (172)
Q Consensus 10 ~~~~~~I~~~~D~~CP-wcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~ 60 (172)
-..++.|-+|+=..|| -|-.....|.+++++++++ +..|+...+.++|..
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~ 100 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPER 100 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCC
Confidence 3456778888889997 6888888888888877654 445666666667753
No 104
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=48.39 E-value=28 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=24.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
|++|+-+.|+.|--+...|++ .+++++.+-|.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~--------~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA--------AGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH--------cCCCcEEeehh
Confidence 789999999999988877663 36777766554
No 105
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=48.01 E-value=49 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.5
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~ 40 (172)
..++.|.+|+..-||+|=...+.++++...
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 457789999999999999888877776654
No 106
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=47.97 E-value=31 Score=19.79 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=13.0
Q ss_pred EEEEecCCcchhhhHHHH
Q 030756 17 DVSSDTVCPWCFVGKRNL 34 (172)
Q Consensus 17 ~~~~D~~CPwcyl~~~~L 34 (172)
++|+-..||+|.-....|
T Consensus 2 ~ly~~~~~~~~~~~~~~l 19 (71)
T cd00570 2 KLYYFPGSPRSLRVRLAL 19 (71)
T ss_pred EEEeCCCCccHHHHHHHH
Confidence 577778899999644443
No 107
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=46.83 E-value=22 Score=21.08 Aligned_cols=21 Identities=38% Similarity=0.763 Sum_probs=15.6
Q ss_pred eEEEEEecCCcchhhhHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~ 35 (172)
.|++|+-.-||+|.-....|.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~ 21 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLD 21 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHH
Confidence 367889899999997554443
No 108
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=46.77 E-value=12 Score=22.31 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=21.3
Q ss_pred HHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 134 GYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 134 a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
..|+.|+-....+.+..+|+.+|++++.+
T Consensus 30 ~~~e~g~~~~~~~~l~~i~~~~~v~~~~l 58 (64)
T PF12844_consen 30 SKIENGKRKPSVSTLKKIAEALGVSLDEL 58 (64)
T ss_dssp HHHHTTSS--BHHHHHHHHHHHTS-HHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHhCCCHHHH
Confidence 45677877777899999999999998754
No 109
>PRK09726 antitoxin HipB; Provisional
Probab=46.57 E-value=32 Score=22.24 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.9
Q ss_pred HhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 135 YFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 135 ~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.|+.|....+.+.|..+|..+|++.+...
T Consensus 44 ~~e~g~~~ps~~~l~~ia~~lgv~~~~~~ 72 (88)
T PRK09726 44 NFENNPDNTTLTTFFKILQSLELSMTLCD 72 (88)
T ss_pred HHHCCCCCCCHHHHHHHHHHcCCCcchhc
Confidence 45778777799999999999999987643
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=45.29 E-value=50 Score=23.85 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=30.1
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN 57 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~ 57 (172)
..+..|-+|+..-||.|--..+.|.++..+|++ .+ +.+..+...
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~--v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KG--VAVVAINSN 67 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CC--eEEEEEecC
Confidence 345677777799999998777888888877753 23 444444433
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=44.78 E-value=45 Score=29.02 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=25.5
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~ 40 (172)
.+++.|++|.-+.||||=-+...++++...
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 467899999999999999888888877654
No 112
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=44.21 E-value=20 Score=22.24 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCcccccccc
Q 030756 145 KCAYFSFDEFFFFFPSLVNINH 166 (172)
Q Consensus 145 ~~vL~~ia~~~Gld~~~~~~~~ 166 (172)
-++|.+++++.||+++.-.+.|
T Consensus 20 ~~VL~eac~k~~l~~~~~~L~h 41 (65)
T PF11470_consen 20 NQVLEEACKKFGLDPSSYDLKH 41 (65)
T ss_dssp HHHHHHHHHHTT--GGG-EEEE
T ss_pred HHHHHHHHHHcCCCccceEEEE
Confidence 4799999999999998544433
No 113
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=43.89 E-value=33 Score=20.62 Aligned_cols=32 Identities=9% Similarity=-0.069 Sum_probs=20.1
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
+++|+...||+|.-....| +. .+++++.+.+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l----~~----~gi~~~~~~v~ 32 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVL----AE----KGVSVEIIDVD 32 (73)
T ss_pred CEEEECCCChhHHHHHHHH----HH----cCCccEEEEcC
Confidence 3578889999999654433 32 25665555443
No 114
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=43.80 E-value=14 Score=25.45 Aligned_cols=28 Identities=11% Similarity=-0.268 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhcCCCccccc--ccccccc
Q 030756 143 GDKCAYFSFDEFFFFFPSLVN--INHELTH 170 (172)
Q Consensus 143 sd~~vL~~ia~~~Gld~~~~~--~~~~~~~ 170 (172)
.....|..+|.++||+.+.+. +..|||.
T Consensus 65 ~~Dp~l~~Aa~~sGl~~~~l~~~LP~elti 94 (108)
T smart00099 65 KVDPVIEQACKESGLDIDDLGGNLPKELTL 94 (108)
T ss_pred cCCHHHHHHHHHhCCCHHHHHHhCCcccEE
Confidence 344678999999999988877 8888874
No 115
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=43.70 E-value=17 Score=21.12 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 130 ELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 130 al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.+.+.+|..+. -.+.+...+||.++||+...+.
T Consensus 13 ~~L~~~f~~~~-~p~~~~~~~la~~l~l~~~~V~ 45 (57)
T PF00046_consen 13 KVLEEYFQENP-YPSKEEREELAKELGLTERQVK 45 (57)
T ss_dssp HHHHHHHHHSS-SCHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHhc-cccccccccccccccccccccc
Confidence 34455555543 4566779999999999987653
No 116
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=43.10 E-value=53 Score=20.86 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=25.6
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+..|-+|++.-|+.|--..+.++++...+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~ 43 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK 43 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhc
Confidence 35567889999999999988888888777664
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=42.73 E-value=39 Score=23.21 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=26.3
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+.+-|.||.-.-||+|-...+.|.++.+++.+ .+++|
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~v 60 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVV 60 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEE
Confidence 34556666577899999888888888877753 35544
No 118
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=42.71 E-value=35 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.4
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+.+-|.||.-.-||+|-.....|.++.+++.+ .+++|
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~v 67 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVV 67 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEE
Confidence 34556677667899999888888888877753 25554
No 119
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=42.23 E-value=62 Score=22.94 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.7
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+..|-+|...-|| |-.-.+.|.++.++|++ .++.|
T Consensus 23 k~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~v 57 (152)
T cd00340 23 KVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVV 57 (152)
T ss_pred CEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEE
Confidence 4455666699999 98888889988888854 34444
No 120
>PF15616 TerY-C: TerY-C metal binding domain
Probab=42.14 E-value=11 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.826 Sum_probs=10.7
Q ss_pred eEEEEEe---cCCcchhh
Q 030756 15 RIDVSSD---TVCPWCFV 29 (172)
Q Consensus 15 ~I~~~~D---~~CPwcyl 29 (172)
+|..|.+ +.||||--
T Consensus 96 kl~Ci~g~~~~~CPwCg~ 113 (131)
T PF15616_consen 96 KLFCIDGEGEVTCPWCGN 113 (131)
T ss_pred CEEEeCCCCCEECCCCCC
Confidence 4556655 89999963
No 121
>PRK05932 RNA polymerase factor sigma-54; Reviewed
Probab=41.89 E-value=34 Score=29.61 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~ 160 (172)
....+-..|+.||..|..-=.|=++.+||+++|+..+
T Consensus 322 v~~~Iv~~Q~~Ff~~G~~~LkPLtlkdvAe~lglheS 358 (455)
T PRK05932 322 VARCIVEQQRDFFEHGEEALKPLVLKDIAEELGMHES 358 (455)
T ss_pred HHHHHHHHHHHHHhCCcccCcCccHHHHHHHhCCCcc
Confidence 4556667899999999776788899999999999876
No 122
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=41.81 E-value=44 Score=18.93 Aligned_cols=24 Identities=8% Similarity=-0.180 Sum_probs=19.0
Q ss_pred HhcCCCCCCCHHHHHHHHHhcCCC
Q 030756 135 YFTQGKYIGDKCAYFSFDEFFFFF 158 (172)
Q Consensus 135 ~~~eg~disd~~vL~~ia~~~Gld 158 (172)
.|+.|+..-+.+.+..+++.+|++
T Consensus 34 ~~e~g~~~~~~~~~~~i~~~lgv~ 57 (58)
T TIGR03070 34 DVENGKPTVRLDKVLRVLDALGLE 57 (58)
T ss_pred HHHCCCCCCCHHHHHHHHHHcCCC
Confidence 356777666888999999999875
No 123
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=41.81 E-value=26 Score=22.39 Aligned_cols=21 Identities=10% Similarity=-0.187 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHhcCCCcccc
Q 030756 142 IGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 142 isd~~vL~~ia~~~Gld~~~~ 162 (172)
-.|++.+.+.+++.||+++.+
T Consensus 54 Ap~~eaV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 54 APDEEAVREHARRAGLPADRI 74 (77)
T ss_pred CCCHHHHHHHHHHcCCCcceE
Confidence 568888999999999988753
No 124
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=41.78 E-value=45 Score=20.28 Aligned_cols=28 Identities=11% Similarity=-0.081 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~ 40 (172)
+.-|-+|+-.-|++|-...+.+.++...
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 3446677778999999999999888765
No 125
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=41.72 E-value=40 Score=20.35 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=12.6
Q ss_pred EEEEecCCcchhhhHHH
Q 030756 17 DVSSDTVCPWCFVGKRN 33 (172)
Q Consensus 17 ~~~~D~~CPwcyl~~~~ 33 (172)
.+|+-..||||.-....
T Consensus 2 ~ly~~~~~p~~~rv~~~ 18 (71)
T cd03060 2 ILYSFRRCPYAMRARMA 18 (71)
T ss_pred EEEecCCCcHHHHHHHH
Confidence 57888899999864433
No 126
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=41.70 E-value=12 Score=20.47 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHhcCCCcc
Q 030756 141 YIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 141 disd~~vL~~ia~~~Gld~~ 160 (172)
|+.+.-.|.++|+.+|++++
T Consensus 4 ~~~~~~~l~~iA~~~g~S~~ 23 (42)
T PF00165_consen 4 NLQQKLTLEDIAEQAGFSPS 23 (42)
T ss_dssp TT-SS--HHHHHHHHTS-HH
T ss_pred cccCCCCHHHHHHHHCCCHH
Confidence 56677789999999999665
No 127
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=41.54 E-value=33 Score=29.38 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~ 160 (172)
....+-..|+.||..|..-=.|=++.+||+++|+..+
T Consensus 297 v~~~Iv~~Q~~Ff~~G~~~LkPLtlkdiA~~lglheS 333 (429)
T TIGR02395 297 VAEAIVEHQKDFFLGGPAALKPLTLREVAEELGLHES 333 (429)
T ss_pred HHHHHHHHHHHHHhcCcccCcCCcHHHHHHHhCCCcc
Confidence 4556667899999999766788999999999999876
No 128
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=41.36 E-value=16 Score=21.00 Aligned_cols=26 Identities=12% Similarity=-0.007 Sum_probs=21.2
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756 136 FTQGKYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 136 ~~eg~disd~~vL~~ia~~~Gld~~~ 161 (172)
|+.|...-+.+.+..++..+|++++.
T Consensus 29 ~~~g~~~~~~~~~~~ia~~l~~~~~~ 54 (55)
T PF01381_consen 29 IENGKRNPSLDTLKKIAKALGVSPEY 54 (55)
T ss_dssp HHTTSSTSBHHHHHHHHHHHTSEHHH
T ss_pred HhcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 46677788899999999999987653
No 129
>PRK10824 glutaredoxin-4; Provisional
Probab=41.22 E-value=27 Score=24.25 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.8
Q ss_pred cCCcchhhhHHHHHH
Q 030756 22 TVCPWCFVGKRNLDK 36 (172)
Q Consensus 22 ~~CPwcyl~~~~L~~ 36 (172)
+.||||--+...|..
T Consensus 28 p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 28 PSCGFSAQAVQALSA 42 (115)
T ss_pred CCCchHHHHHHHHHH
Confidence 699999987776654
No 130
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=41.14 E-value=71 Score=20.38 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=22.8
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+-+|+..-||.|--..+.+.++.+.++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFA 48 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhC
Confidence 44666668899999988888888887664
No 131
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=41.08 E-value=91 Score=20.06 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q 030756 80 QGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFF 158 (172)
Q Consensus 80 ~~~~~~l~~~a~~~Gi~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld 158 (172)
..+...+.+.-+..|.++...+. -+-+.+-.++..++...|. ...+... .- =.+||+++|++
T Consensus 8 ~~F~~~L~~f~~~~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG--~~~V~~~---~~------------W~~va~~lg~~ 70 (92)
T PF01388_consen 8 EQFLEQLREFHESRGTPIDRPPVIGGKPVDLYKLYKAVMKRGG--FDKVTKN---KK------------WREVARKLGFP 70 (92)
T ss_dssp HHHHHHHHHHHHHTTSSSSS-SEETTSE-SHHHHHHHHHHHTS--HHHHHHH---TT------------HHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcCCCEeCcHHHHHHHHHhCcC--cccCccc---ch------------HHHHHHHhCCC
Confidence 34567788888889999755544 4677778888888877776 3333221 11 46678888887
Q ss_pred cccccc
Q 030756 159 PSLVNI 164 (172)
Q Consensus 159 ~~~~~~ 164 (172)
+.....
T Consensus 71 ~~~~~~ 76 (92)
T PF01388_consen 71 PSSTSA 76 (92)
T ss_dssp TTSCHH
T ss_pred CCCCcH
Confidence 654433
No 132
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=40.39 E-value=29 Score=23.61 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=17.0
Q ss_pred eeEEEEEecCCcchhhhHHHHH
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLD 35 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~ 35 (172)
-.+-+|+=..||||.-+...|.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~ 35 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLS 35 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHH
Confidence 4577899999999998665544
No 133
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=40.25 E-value=1.2e+02 Score=20.90 Aligned_cols=26 Identities=12% Similarity=-0.139 Sum_probs=20.4
Q ss_pred HhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756 135 YFTQGKYIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 135 ~~~eg~disd~~vL~~ia~~~Gld~~ 160 (172)
.|+.|+.-.+.++|..+|..+|++++
T Consensus 37 ~iE~g~~~ps~~~l~kIa~aL~v~~~ 62 (120)
T PRK13890 37 DLTTGKANPSLKVMEAIADALETPLP 62 (120)
T ss_pred HHHcCCCCCCHHHHHHHHHHHCCCHH
Confidence 35677666788999999999999665
No 134
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=40.01 E-value=56 Score=21.13 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=24.7
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
...+-+|+-+-||.|--..+.++++.++++
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~ 48 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMD 48 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhc
Confidence 445667778999999999999999988775
No 135
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=39.99 E-value=63 Score=21.23 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
+..+-+|+-.-||.|-...+.+.++.+.+.
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~ 51 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEA 51 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhc
Confidence 344555567899999998888988766553
No 136
>KOG2425 consensus Nuclear protein involved in cell morphogenesis and cell surface growth [General function prediction only]
Probab=39.86 E-value=15 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCccccccccccccC
Q 030756 148 YFSFDEFFFFFPSLVNINHELTHL 171 (172)
Q Consensus 148 L~~ia~~~Gld~~~~~~~~~~~~~ 171 (172)
|+.+|.+.|||--.++++||+||=
T Consensus 125 la~lA~~IgiP~wfVDLRHegTHe 148 (599)
T KOG2425|consen 125 LACLAQEIGIPDWFVDLRHEGTHE 148 (599)
T ss_pred HHHHHHHcCCcHHHHHhhcccchh
Confidence 788999999999999999999983
No 137
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=38.98 E-value=16 Score=25.47 Aligned_cols=27 Identities=11% Similarity=-0.212 Sum_probs=19.3
Q ss_pred CHHHHHHHHHhcCCCccccc--ccccccc
Q 030756 144 DKCAYFSFDEFFFFFPSLVN--INHELTH 170 (172)
Q Consensus 144 d~~vL~~ia~~~Gld~~~~~--~~~~~~~ 170 (172)
-+.+|..+|.++|++.+.+. +..|||.
T Consensus 68 ~Dp~l~~Aa~~sgl~~~~l~~~LP~eltl 96 (118)
T PF07742_consen 68 MDPVLEQAAKESGLSYEDLRSLLPRELTL 96 (118)
T ss_dssp B-HHHHHHHHHTT--HHHHHHHS-TTEEE
T ss_pred CCHHHHHHHHHhCCCHHHHHHhcchhcEE
Confidence 45778888999999999888 8888874
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=38.95 E-value=52 Score=22.87 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=25.1
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
.+-|.||.-.-||.|--..+.|.++.++|++ .+++|
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~v 65 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEV 65 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEE
Confidence 3445555467799999888888888887753 35544
No 139
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=38.59 E-value=30 Score=24.26 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=21.2
Q ss_pred HhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 135 YFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 135 ~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
.|+.|....+.++|..++..+|++++-+
T Consensus 37 ~~E~g~~~p~~~~l~~la~~l~vs~~~l 64 (135)
T PRK09706 37 QWERDETEPTGKNLFALAKALQCSPTWL 64 (135)
T ss_pred HHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3677777777888888888888877643
No 140
>PLN02412 probable glutathione peroxidase
Probab=38.25 E-value=60 Score=23.61 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=25.9
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~ 50 (172)
+..|-+|+..-||.|---.+.|.++.++|+++ ++.|.
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vv 66 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEIL 66 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEE
Confidence 34444555788999987778899888888643 55553
No 141
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=38.05 E-value=54 Score=23.42 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=23.6
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~ 43 (172)
+..+-+|+..-||.|---.+.|.++.++|.+
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~ 92 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKE 92 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhhc
Confidence 4455556688999998878888888887754
No 142
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=37.44 E-value=72 Score=20.40 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
+..+-+++..-|+.|--..+.+.++.+.+.
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAKALK 48 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 334556667899999998888988887664
No 143
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=37.22 E-value=75 Score=24.10 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.0
Q ss_pred CcceeEEEEEe---cCCcchhhhHHHHHHHHHhcC
Q 030756 11 KKLIRIDVSSD---TVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 11 ~~~~~I~~~~D---~~CPwcyl~~~~L~~~~~~~~ 42 (172)
...++|.+|++ .-||.|=...+.++++.+.++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~ 52 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP 52 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC
Confidence 35677888988 889999999999999887773
No 144
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=36.99 E-value=51 Score=22.69 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=26.8
Q ss_pred cceeEEEEEec-CCcchhhhHHHHHHHHHhcCC
Q 030756 12 KLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 12 ~~~~I~~~~D~-~CPwcyl~~~~L~~~~~~~~~ 43 (172)
.+.-|.|+.+. .||=|---.+.|+++.++|++
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~ 60 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG 60 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCC
Confidence 45667888887 899999999999999988764
No 145
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=36.81 E-value=85 Score=22.75 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCcccc
Q 030756 139 GKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 139 g~disd~~vL~~ia~~~Gld~~~~ 162 (172)
+-|.....+|.+|+..+||+|.+.
T Consensus 119 ~~d~~E~avl~eI~~aLGL~p~~~ 142 (144)
T COG3793 119 EFEAEERAVLREIAGALGLSPAEF 142 (144)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHhc
Confidence 456777899999999999988653
No 146
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=36.76 E-value=30 Score=27.49 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc-ccccccccc
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS-LVNINHELT 169 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~-~~~~~~~~~ 169 (172)
....-+.|.+.....|.+..... ..++++.+||+++ +-+..||||
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~~~~-i~~~L~~VgL~~~~l~R~P~eLS 143 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKSQQR-IAELLDQVGLPPSFLDRRPHELS 143 (252)
T ss_pred chhHHHHHhhhhccCCccHHHHH-HHHHHHHcCCCHHHHhcCchhcC
Confidence 45556677777777777766666 8999999999988 667788876
No 147
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=36.59 E-value=76 Score=20.13 Aligned_cols=31 Identities=6% Similarity=-0.189 Sum_probs=24.7
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
....+-+|+-+-||-|.-..+.+.++...+.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~ 42 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQ 42 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhC
Confidence 3455667777899999999999998887764
No 148
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=36.12 E-value=98 Score=20.84 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceeEEEEE-ecCCcchhhhHHHHHHHHHhc
Q 030756 13 LIRIDVSS-DTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 13 ~~~I~~~~-D~~CPwcyl~~~~L~~~~~~~ 41 (172)
+..+.++| -.-||+|-...+.|+++.+.+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~ 51 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS 51 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc
Confidence 44555554 479999999899998887654
No 149
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=35.92 E-value=32 Score=20.39 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 127 LAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 127 ~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
+..|+-.-||..-++ ..+.++|+++|++++.+
T Consensus 9 L~~A~~~GYfd~PR~----~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 9 LKAAYELGYFDVPRR----ITLEELAEELGISKSTV 40 (53)
T ss_pred HHHHHHcCCCCCCCc----CCHHHHHHHhCCCHHHH
Confidence 444555556644444 45889999999987754
No 150
>PRK06424 transcription factor; Provisional
Probab=35.92 E-value=54 Score=23.70 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=25.3
Q ss_pred HHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 134 GYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 134 a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
..|+.|....+.+++..++..+|++..+.
T Consensus 115 skiE~G~~~Ps~~~l~kLa~~Lgvsl~e~ 143 (144)
T PRK06424 115 ASIERGDLLPDIKTARKLEKILGITLIEK 143 (144)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 45799999999999999999999987754
No 151
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=35.80 E-value=1.9e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.7
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p 53 (172)
++.|-++...-|+.|- ....|+++.++|++ .+++|.=-|
T Consensus 26 KvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-~gl~Vlg~p 64 (183)
T PRK10606 26 NVLLIVNVASKCGLTP-QYEQLENIQKAWAD-QGFVVLGFP 64 (183)
T ss_pred CEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-CCeEEEEee
Confidence 4566777888999996 68889988888864 366664444
No 152
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=35.71 E-value=99 Score=21.84 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~ 43 (172)
+..|-+|+-.-|++|--..+.+.++.+.|.+
T Consensus 21 k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~ 51 (142)
T cd02950 21 KPTLVEFYADWCTVCQEMAPDVAKLKQKYGD 51 (142)
T ss_pred CEEEEEEECCcCHHHHHhHHHHHHHHHHhcc
Confidence 3445566667999999989999988877753
No 153
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=35.57 E-value=63 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=25.9
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
++-|-+|...-||.|-.-.+.|.++.+++.+ .++.|
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~v 60 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVEL 60 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEE
Confidence 3445566688999999988888888877743 34544
No 154
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=35.48 E-value=12 Score=27.50 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~ 161 (172)
...++-..+.+||..|..--.|=++.++|+++|+.++.
T Consensus 28 v~~~iv~~Q~~ff~~g~~~l~PLt~~~iA~~lgl~~ST 65 (160)
T PF04552_consen 28 VAQAIVERQKDFFLGGPGALKPLTMKDIADELGLHEST 65 (160)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHhcCcccCcCCCHHHHHHHhCCCHhH
Confidence 44566778899999887777788999999999998763
No 155
>PF04487 CITED: CITED; InterPro: IPR007576 CITED, CBP/p300-interacting transactivator with ED-rich tail, is characterised by a conserved 32-amino acid sequence at the C terminus. CITED protein does not bind DNA directly and is thought to function as a transcriptional co-activator [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1R8U_A 1P4Q_A.
Probab=35.43 E-value=16 Score=28.22 Aligned_cols=21 Identities=10% Similarity=-0.168 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCc
Q 030756 139 GKYIGDKCAYFSFDEFFFFFP 159 (172)
Q Consensus 139 g~disd~~vL~~ia~~~Gld~ 159 (172)
.-|.-|+|||..+.-|+|||.
T Consensus 163 D~d~iDEevL~sLv~ElGLdr 183 (214)
T PF04487_consen 163 DTDLIDEEVLMSLVVELGLDR 183 (214)
T ss_dssp S-SSS-CCHHHHHHHHHTCCC
T ss_pred cccccCHHHHHHHHHHHCcHH
Confidence 457889999999999999995
No 156
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=35.22 E-value=94 Score=18.05 Aligned_cols=31 Identities=6% Similarity=-0.067 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEF 154 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~ 154 (172)
...++...-+.-|.+++++.|++.+..+...
T Consensus 22 ~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~ 52 (59)
T PF05347_consen 22 EREYIRAEIRQEFRKNRNETDPEKIEELLKK 52 (59)
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3456677778888999999999998887653
No 157
>PRK12469 RNA polymerase factor sigma-54; Provisional
Probab=35.07 E-value=47 Score=29.00 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756 124 QHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS 160 (172)
Q Consensus 124 ~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~ 160 (172)
....+-..|+.||..|..-=.|=+|.+||+++|+..+
T Consensus 348 V~~~Iv~~Q~~Ff~~G~~~LkPLtlkdVAe~lglHeS 384 (481)
T PRK12469 348 VAECIVARQRDFFRYGEIALKPLVLRDVAEELGLHES 384 (481)
T ss_pred HHHHHHHHHHHHHhCCcccCcCCcHHHHHHHhCCCcc
Confidence 4456667899999999877788999999999999765
No 158
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=34.98 E-value=15 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=11.5
Q ss_pred ecCCcchhhhHHHHHHHHH
Q 030756 21 DTVCPWCFVGKRNLDKAIA 39 (172)
Q Consensus 21 D~~CPwcyl~~~~L~~~~~ 39 (172)
.|.||||.-+ -....+..
T Consensus 2 ~f~CP~C~~~-~~~~~L~~ 19 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVE 19 (54)
T ss_pred CcCCCCCCCc-cCHHHHHH
Confidence 4789999983 33444444
No 159
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=34.82 E-value=94 Score=18.95 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=19.3
Q ss_pred EEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756 18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 18 ~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
+|....||||.-..-.|+. .++.++++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~--------~~i~~~~~~v~ 30 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE--------KGIPYELVPVD 30 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH--------HTEEEEEEEEB
T ss_pred CCCcCCChHHHHHHHHHHH--------cCCeEEEeccC
Confidence 4677899999965444332 26666666554
No 160
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=34.49 E-value=14 Score=21.23 Aligned_cols=9 Identities=44% Similarity=1.457 Sum_probs=5.0
Q ss_pred ecCCcchhh
Q 030756 21 DTVCPWCFV 29 (172)
Q Consensus 21 D~~CPwcyl 29 (172)
-..|+|||-
T Consensus 21 ~tlC~~C~k 29 (46)
T PF02977_consen 21 ITLCQWCWK 29 (46)
T ss_dssp SSSS-EE-C
T ss_pred eeehHHHHh
Confidence 357999984
No 161
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=34.29 E-value=55 Score=17.58 Aligned_cols=26 Identities=8% Similarity=-0.157 Sum_probs=20.9
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756 136 FTQGKYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 136 ~~eg~disd~~vL~~ia~~~Gld~~~ 161 (172)
|..|....+.+.+..+++.+|++++.
T Consensus 32 ~~~g~~~~~~~~~~~i~~~~~~~~~~ 57 (58)
T cd00093 32 IENGKRNPSLETLEKLAKALGVSLDE 57 (58)
T ss_pred HHcCCCCCCHHHHHHHHHHhCCChhh
Confidence 56677788889999999999988753
No 162
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=33.31 E-value=65 Score=20.97 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 125 HNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 125 ~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.+|...+.++.-..|...+..+++..+++.+||+.+...
T Consensus 3 ~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~ 41 (92)
T PF14338_consen 3 DELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERN 41 (92)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHH
Confidence 456667777776658899999999999999999877543
No 163
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.11 E-value=1.1e+02 Score=21.12 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=42.3
Q ss_pred HHHHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHH---HHHHHhcCCCCCCCHHHHHHHHHhc
Q 030756 86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEE---LFLGYFTQGKYIGDKCAYFSFDEFF 155 (172)
Q Consensus 86 l~~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~a---l~~a~~~eg~disd~~vL~~ia~~~ 155 (172)
..+|-+..|++|.+-....++...-.+..+.+..|.. ...+++. .|+..=.+-.++++.+.+..+++.-
T Consensus 17 a~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~-~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~ 88 (117)
T COG1393 17 ALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDG-VEELINTRGTTYRELNLDKEDLSDEELIEALLENP 88 (117)
T ss_pred HHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCcc-HHHHHHhccchHHHcCCcccccChHHHHHHHHhCh
Confidence 3456778999998766555555556666676666531 2333333 3333333335788888888888764
No 164
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=33.02 E-value=78 Score=20.54 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
...+-+|+.+-|+.|--..+.++++.+.+.
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~ 48 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAKAAKELD 48 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHhc
Confidence 335666777899999988889998887664
No 165
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=32.91 E-value=74 Score=22.09 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.3
Q ss_pred cceeEEEEEe------cCCcchhhhHHHHHHHHHhcC
Q 030756 12 KLIRIDVSSD------TVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 12 ~~~~I~~~~D------~~CPwcyl~~~~L~~~~~~~~ 42 (172)
.++-|.||.| .=||-|-...+.|+++..+++
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 4567888887 899999999999999988775
No 166
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=32.89 E-value=50 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.3
Q ss_pred eEEEEEecCCcchhhhHHHHHHHH
Q 030756 15 RIDVSSDTVCPWCFVGKRNLDKAI 38 (172)
Q Consensus 15 ~I~~~~D~~CPwcyl~~~~L~~~~ 38 (172)
+|++|+=+.|+-|=-+...|.++.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~ 24 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVA 24 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Confidence 589999999999999888887644
No 167
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=31.99 E-value=1e+02 Score=25.56 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=35.6
Q ss_pred ceEEEEeeeeeCCCCCC-CCCCHHHHHHHHhCCcHHHHHHHHHHHHHhcCCccccCC
Q 030756 46 DFEIRWHPFFLNPSAPK-EGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG 101 (172)
Q Consensus 46 ~~~v~~~p~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gi~~~~~~ 101 (172)
.+.+++--|.|.|.... .+..+++++.+-.| .+++..+|+..|||+...+
T Consensus 126 QvrFELt~ysl~P~~kviapwrmp~f~~rf~G------r~Dl~eYakq~giPvpvT~ 176 (412)
T KOG1706|consen 126 QVRFELTFYSLKPDVKVIAPWRMPEFYERFKG------RKDLLEYAKQHGIPVPVTP 176 (412)
T ss_pred ceeeeeeeeccCCcceeeccccchHHHHhhcC------chHHHHHHHhcCCCccccC
Confidence 56666677888887654 34556777765444 4788889999999987553
No 168
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=31.58 E-value=1.5e+02 Score=19.72 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=24.5
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
...|-.|+.+-|+-|-.-.+.++++.++|+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~ 54 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP 54 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 455667788899999999999999888764
No 169
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=31.34 E-value=17 Score=20.65 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=5.9
Q ss_pred CcchhhhH
Q 030756 24 CPWCFVGK 31 (172)
Q Consensus 24 CPwcyl~~ 31 (172)
||||....
T Consensus 1 CP~C~~kk 8 (43)
T PF03470_consen 1 CPFCPGKK 8 (43)
T ss_pred CCCCCCCC
Confidence 88888653
No 170
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=30.96 E-value=1.4e+02 Score=23.85 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP 58 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~ 58 (172)
.+..|-+|+..-||.|--..+.|+++.++| +++| .++.++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y----g~~V--i~VsvD~ 206 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY----GIEV--LPVSVDG 206 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHc----CcEE--EEEeCCC
Confidence 345666777778999999999999887754 4444 4454443
No 171
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=30.76 E-value=1.3e+02 Score=20.39 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=26.8
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCC-CceEEEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRW 51 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~-~~~~v~~ 51 (172)
+..|-+|+-.-||.|--..+.|.++.+++.+. .+++|.+
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~ 58 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVF 58 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEE
Confidence 44555566689999998888888887776532 2455544
No 172
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.52 E-value=68 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=15.5
Q ss_pred eEEEEEec------CCcchhhhHHHHH
Q 030756 15 RIDVSSDT------VCPWCFVGKRNLD 35 (172)
Q Consensus 15 ~I~~~~D~------~CPwcyl~~~~L~ 35 (172)
+|.+|+-. .||||.-+...|+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~ 27 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILE 27 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHH
Confidence 36788888 8999987665554
No 173
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=30.39 E-value=1.5e+02 Score=19.95 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=25.0
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
...+-+|+.+-||-|-...+.|+++.++++
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~ 52 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHL 52 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcC
Confidence 456777888999999999999999888764
No 174
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=30.14 E-value=1.4e+02 Score=20.95 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=27.3
Q ss_pred CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEe
Q 030756 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (172)
Q Consensus 11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~ 52 (172)
....+|.++.-.=||.|-.-.+.|.++++..+ +++|++.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i 78 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRII 78 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 45689999999999999999999999887532 5666654
No 175
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=74 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=23.0
Q ss_pred ceeEEEEEec-------CCcchhhhHHHHHHHHHhcCC
Q 030756 13 LIRIDVSSDT-------VCPWCFVGKRNLDKAIASSKD 43 (172)
Q Consensus 13 ~~~I~~~~D~-------~CPwcyl~~~~L~~~~~~~~~ 43 (172)
++-|-|+.+- =||.|-.|.+.+.++++..+.
T Consensus 27 ~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~ 64 (128)
T KOG3425|consen 27 TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE 64 (128)
T ss_pred eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC
Confidence 3445555544 599999999999999985543
No 176
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.77 E-value=42 Score=24.20 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=13.3
Q ss_pred cceeEEEEE---ecCCcchhh
Q 030756 12 KLIRIDVSS---DTVCPWCFV 29 (172)
Q Consensus 12 ~~~~I~~~~---D~~CPwcyl 29 (172)
..+.+.+|+ +..||||+-
T Consensus 14 ~~~~~~vfl~GCnlrC~~C~n 34 (147)
T TIGR02826 14 NEYSLAFYITGCPLGCKGCHS 34 (147)
T ss_pred CCEEEEEEeCCCCCCCCCCCC
Confidence 456667776 589999985
No 177
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=29.43 E-value=1.2e+02 Score=24.20 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCCccc
Q 030756 122 DKQHNLAEELFLGYFTQG-KYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 122 ~~~~~~~~al~~a~~~eg-~disd~~vL~~ia~~~Gld~~~ 161 (172)
+....+++.+++.-|.|| .|....++|..||+.+|++...
T Consensus 127 ~l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~d 167 (267)
T PRK09430 127 DLLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQ 167 (267)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 345567799999999998 5677778899999999999753
No 178
>PTZ00051 thioredoxin; Provisional
Probab=29.32 E-value=1.5e+02 Score=18.68 Aligned_cols=29 Identities=10% Similarity=-0.098 Sum_probs=23.0
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
+..+-+|+..-||.|--..+.++++.+++
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~~~ 47 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSKEY 47 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHc
Confidence 45566777889999999889998887755
No 179
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=29.29 E-value=20 Score=24.52 Aligned_cols=8 Identities=50% Similarity=1.539 Sum_probs=6.3
Q ss_pred cCCcchhh
Q 030756 22 TVCPWCFV 29 (172)
Q Consensus 22 ~~CPwcyl 29 (172)
..||||-.
T Consensus 58 lsCpwC~g 65 (105)
T PF07098_consen 58 LSCPWCTG 65 (105)
T ss_pred hcChhHHH
Confidence 47999965
No 180
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=29.12 E-value=1.2e+02 Score=19.48 Aligned_cols=29 Identities=21% Similarity=0.035 Sum_probs=22.7
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+-.|+-.-||.|-...+.++++.+++.
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~ 49 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALK 49 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 45556666899999988899998888764
No 181
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=29.00 E-value=21 Score=21.14 Aligned_cols=8 Identities=38% Similarity=1.061 Sum_probs=5.9
Q ss_pred cCCcchhh
Q 030756 22 TVCPWCFV 29 (172)
Q Consensus 22 ~~CPwcyl 29 (172)
+.||||.=
T Consensus 1 i~CPyCge 8 (52)
T PF14255_consen 1 IQCPYCGE 8 (52)
T ss_pred CCCCCCCC
Confidence 46899973
No 182
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=28.99 E-value=52 Score=18.68 Aligned_cols=22 Identities=0% Similarity=-0.272 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHhcCCCccccc
Q 030756 142 IGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 142 isd~~vL~~ia~~~Gld~~~~~ 163 (172)
+.+++.+.++|.+.|++-+..+
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 6799999999999999765443
No 183
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=28.75 E-value=1.1e+02 Score=21.17 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCCccccc
Q 030756 121 LDKQHNLAEELFLGYFTQG-KYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 121 ~~~~~~~~~al~~a~~~eg-~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
.+....++..++.-...+| .+..-.+.|.+++..+||+.+.++
T Consensus 93 ~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~ 136 (140)
T PF05099_consen 93 PEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQ 136 (140)
T ss_dssp HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS---
T ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHh
Confidence 3446778888999999998 345555779999999999988664
No 184
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=28.00 E-value=85 Score=18.63 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=19.7
Q ss_pred EEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756 17 DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (172)
Q Consensus 17 ~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L 56 (172)
++|+...||+|+.... +++. .+++++.+.+.+
T Consensus 2 ~L~~~~~~~~~~~~~~----~l~~----~gi~~~~~~~~~ 33 (73)
T cd03042 2 ILYSYFRSSASYRVRI----ALNL----KGLDYEYVPVNL 33 (73)
T ss_pred EEecCCCCcchHHHHH----HHHH----cCCCCeEEEecC
Confidence 5777888999995432 3332 256666666554
No 185
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=26.70 E-value=1.3e+02 Score=19.14 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=23.7
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
..+-+|+..-||.|--..+.+.++.+.+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~ 47 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELK 47 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHh
Confidence 45667777899999999999998887764
No 186
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=26.26 E-value=1.1e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=25.7
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEE
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~ 50 (172)
..|-++.-..||.|=--.+.|.++.++|+++ ++.|.
T Consensus 24 ~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~ 59 (153)
T TIGR02540 24 VSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVL 59 (153)
T ss_pred EEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEE
Confidence 3344556777999988888888988888643 55553
No 187
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=26.21 E-value=1.2e+02 Score=21.76 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 030756 88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGY 135 (172)
Q Consensus 88 ~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~ 135 (172)
.+.+.+||.|+.= ....-.|-.|....-+..|. ...|.+.|-.+|
T Consensus 15 ~L~~~~GI~Fn~L-~titNmPI~RF~~~L~~~g~--~~~Ym~lL~~~f 59 (134)
T PF12345_consen 15 ELKERFGIVFNNL-FTITNMPIGRFGSFLERSGN--LEDYMELLVDAF 59 (134)
T ss_pred HHHHhcCceecch-hhhhcCcHHHHHHHHHHccC--HHHHHHHHHHhc
Confidence 3467899998621 12333445666666677787 888888887766
No 188
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=26.07 E-value=32 Score=21.02 Aligned_cols=29 Identities=17% Similarity=0.013 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 130 ELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 130 al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
..|+.|-.-+..| .|.+||+++|++++.+
T Consensus 11 kA~e~y~~~~g~i----~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 11 KAFEIYKESNGKI----KLKDIAEKLGVSESTI 39 (60)
T ss_pred HHHHHHHHhCCCc----cHHHHHHHHCCCHHHH
Confidence 3444454444444 5789999999987654
No 189
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=25.72 E-value=91 Score=22.57 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=25.4
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+-|.||.-.-||.|-...+.|.++.++|.+ .++.|
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~v 66 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEV 66 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEE
Confidence 334444467799999999999998888854 35555
No 190
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=25.46 E-value=40 Score=21.20 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCcccccccccc
Q 030756 139 GKYIGDKCAYFSFDEFFFFFPSLVNINHEL 168 (172)
Q Consensus 139 g~disd~~vL~~ia~~~Gld~~~~~~~~~~ 168 (172)
...|++.+.|.+.+++.|++..+.-+.+-|
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDL 45 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVTQATISRDL 45 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--HHHHHHHH
T ss_pred HCCcCCHHHHHHHHHHcCCCcchhHHHHHH
Confidence 345888888888888888887766555444
No 191
>PF07345 DUF1476: Domain of unknown function (DUF1476); InterPro: IPR009945 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family are found in Bradyrhizobium, Rhizobium, Brucella and Caulobacter species. The function of this family is unknown.; PDB: 2KZC_A 2LL0_A.
Probab=25.42 E-value=18 Score=24.67 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc---CCCcccccccccccc
Q 030756 123 KQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFF---FFFPSLVNINHELTH 170 (172)
Q Consensus 123 ~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~---Gld~~~~~~~~~~~~ 170 (172)
....|+..+=.+-|++ .+|.+|+..+...+ |++.+..++...+..
T Consensus 47 ~a~~Ya~~vv~ad~~e---~gdedv~~kv~~DL~a~gv~~~~~~iR~km~~ 94 (103)
T PF07345_consen 47 DAEAYAKEVVDADFEE---AGDEDVLRKVRADLAAAGVDVSEAEIRAKMDE 94 (103)
T ss_dssp HHHHHHCCCCCSSTTS---SSTTHHHHHHHHHHTTTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 4777888887777776 46888888887755 666677777666544
No 192
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=24 Score=21.70 Aligned_cols=7 Identities=57% Similarity=1.678 Sum_probs=5.7
Q ss_pred cCCcchh
Q 030756 22 TVCPWCF 28 (172)
Q Consensus 22 ~~CPwcy 28 (172)
..||||=
T Consensus 49 v~CPYC~ 55 (62)
T COG4391 49 VVCPYCS 55 (62)
T ss_pred EecCccc
Confidence 5899994
No 193
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.27 E-value=26 Score=19.04 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=6.9
Q ss_pred ecCCcchhh
Q 030756 21 DTVCPWCFV 29 (172)
Q Consensus 21 D~~CPwcyl 29 (172)
|+.||+|--
T Consensus 5 ~v~CP~C~s 13 (36)
T PF03811_consen 5 DVHCPRCQS 13 (36)
T ss_pred eeeCCCCCC
Confidence 667999874
No 194
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=25.23 E-value=91 Score=19.11 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=20.7
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756 136 FTQGKYIGDKCAYFSFDEFFFFFPSL 161 (172)
Q Consensus 136 ~~eg~disd~~vL~~ia~~~Gld~~~ 161 (172)
|+.|..--+.+.+..++..+|++++-
T Consensus 38 ~~~g~~~~~~~~~~~l~~~l~v~~~~ 63 (78)
T TIGR02607 38 IVNGRRGITADMALRLAKALGTSPEF 63 (78)
T ss_pred HHcCCCCCCHHHHHHHHHHcCCCHHH
Confidence 45666666889999999999998763
No 195
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=25.01 E-value=77 Score=20.28 Aligned_cols=20 Identities=5% Similarity=-0.189 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHhcCCCc
Q 030756 140 KYIGDKCAYFSFDEFFFFFP 159 (172)
Q Consensus 140 ~disd~~vL~~ia~~~Gld~ 159 (172)
..+.|++-|.++++++|++.
T Consensus 55 ikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 55 IKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred EEcCCHHHHHHHHHHhCccc
Confidence 35788899999999999874
No 196
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=24.89 E-value=1.9e+02 Score=18.35 Aligned_cols=37 Identities=3% Similarity=-0.222 Sum_probs=27.6
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~ 51 (172)
...+-+|++.-|+-|--..+.+++++++|.. .+.+.|
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~ 49 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVV 49 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEE
Confidence 4456677777888888889999999988853 455554
No 197
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=24.59 E-value=23 Score=22.06 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=6.7
Q ss_pred cCCcchhh
Q 030756 22 TVCPWCFV 29 (172)
Q Consensus 22 ~~CPwcyl 29 (172)
++|||||.
T Consensus 4 ~vCPtC~~ 11 (69)
T PF13746_consen 4 YVCPTCRC 11 (69)
T ss_pred EECCCCeE
Confidence 58999994
No 198
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=23.95 E-value=1.3e+02 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.4
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhc
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASS 41 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~ 41 (172)
+-+|+-.-||+|---.+.|.++.++|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY 98 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc
Confidence 55677788999999999999887754
No 199
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=23.77 E-value=1.6e+02 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=25.0
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~ 51 (172)
+.|-.|+-.-||+|---.+.|.++.++|++ .+++|.-
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VIg 137 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEILA 137 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 444455577888887767788888888864 3565543
No 200
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=23.65 E-value=92 Score=18.24 Aligned_cols=27 Identities=4% Similarity=-0.155 Sum_probs=15.0
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756 136 FTQGKYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 136 ~~eg~disd~~vL~~ia~~~Gld~~~~ 162 (172)
+.....--+.++|..+|..+|++++.+
T Consensus 31 ~~~~~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 31 LNGKPSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp HTTT-----HHHHHHHHHHHT--HHHC
T ss_pred HhcccccccHHHHHHHHHHcCCCHHHH
Confidence 333335677899999999999987643
No 201
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=23.63 E-value=4.8e+02 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCCceEEEEeeee
Q 030756 32 RNLDKAIASSKDQYDFEIRWHPFF 55 (172)
Q Consensus 32 ~~L~~~~~~~~~~~~~~v~~~p~~ 55 (172)
.+|+++++ +..+.|.|.|+.
T Consensus 271 ~rL~~Ai~----r~e~~v~YQPIV 290 (524)
T COG4943 271 RRLQRAIE----RRELCVHYQPIV 290 (524)
T ss_pred HHHHHHHH----hcCceEEeccee
Confidence 46777776 357999999974
No 202
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=23.61 E-value=48 Score=21.52 Aligned_cols=31 Identities=16% Similarity=-0.072 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHhcCCCcc-------ccccccccccCC
Q 030756 142 IGDKCAYFSFDEFFFFFPS-------LVNINHELTHLK 172 (172)
Q Consensus 142 isd~~vL~~ia~~~Gld~~-------~~~~~~~~~~~~ 172 (172)
|..-+.|..|..+.||+.+ .-..+..|++|+
T Consensus 7 V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~ 44 (85)
T PF04225_consen 7 VKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLK 44 (85)
T ss_dssp --TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--
T ss_pred ECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCC
Confidence 4455778888888888765 112445666664
No 203
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=23.53 E-value=33 Score=20.60 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=7.5
Q ss_pred EEEecCCcchh
Q 030756 18 VSSDTVCPWCF 28 (172)
Q Consensus 18 ~~~D~~CPwcy 28 (172)
+|.|+-||-||
T Consensus 4 ~Fm~VkCp~C~ 14 (55)
T PF01667_consen 4 YFMDVKCPGCY 14 (55)
T ss_dssp -EEEEE-TTT-
T ss_pred cEEEEECCCCC
Confidence 78999999998
No 204
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=23.49 E-value=4e+02 Score=23.21 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=44.9
Q ss_pred HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHH-----hcCCCCCCCHHHHHHHHHhc----------
Q 030756 91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGY-----FTQGKYIGDKCAYFSFDEFF---------- 155 (172)
Q Consensus 91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~-----~~eg~disd~~vL~~ia~~~---------- 155 (172)
|..|+.|. -|+-..-+-.-++-..+++.+.|+.| |..+-.|+=..|+++..+..
T Consensus 194 KA~GveYe-----------ERMe~LeevtyPkPL~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM~E~amtF~dyV~~Y 262 (461)
T PF12029_consen 194 KADGVEYE-----------ERMERLEEVTYPKPLAELLEAAFETYRRGHPWVGDFELSPKSVVRDMYERAMTFSDYVSRY 262 (461)
T ss_pred HhcCCCHH-----------HHHHHHhhCCCCCchHHHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHhhCCHHHHHHHh
Confidence 56788886 34333322233333667777777777 67777888888888876654
Q ss_pred CCCccccccccccc
Q 030756 156 FFFPSLVNINHELT 169 (172)
Q Consensus 156 Gld~~~~~~~~~~~ 169 (172)
||.-++...=++||
T Consensus 263 gLaRSEGvlLRYLs 276 (461)
T PF12029_consen 263 GLARSEGVLLRYLS 276 (461)
T ss_pred CcchhhhHHHHHHH
Confidence 77777776666666
No 205
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=23.17 E-value=2.5e+02 Score=21.56 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=40.4
Q ss_pred CcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCH-HHHHHH---HhCCcHHHHHHHHHHHHHhcCCccc
Q 030756 24 CPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNK-KDFYEN---KFGSQNQGIIARMTEVFRGLGLEYN 98 (172)
Q Consensus 24 CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~a~~~Gi~~~ 98 (172)
+||.-. ..-+..+.+.++ .-++-+.|.||..++....+++.. -..++. .||. + -.+++.++|+..|+.+.
T Consensus 115 ~p~~~~-~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~Gi--R-D~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 115 SPWSAV-EGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGI--R-DIEDVEALAAAHGLELE 188 (204)
T ss_pred cCHHHH-HHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCc--c-CHHHHHHHHHHCCCccC
Confidence 455443 223443333343 458999999999887665544322 233332 3553 1 13467888999998874
No 206
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.12 E-value=70 Score=19.23 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=12.2
Q ss_pred EEEEecCCcchhhhH
Q 030756 17 DVSSDTVCPWCFVGK 31 (172)
Q Consensus 17 ~~~~D~~CPwcyl~~ 31 (172)
.+|....||+|.-..
T Consensus 2 ~Ly~~~~s~~~~~~~ 16 (73)
T cd03049 2 KLLYSPTSPYVRKVR 16 (73)
T ss_pred EEecCCCCcHHHHHH
Confidence 678999999999533
No 207
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=23.10 E-value=80 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.672 Sum_probs=15.0
Q ss_pred EecCCcchhhhHHHHHHHHHhcCCCC-ceEEEEe
Q 030756 20 SDTVCPWCFVGKRNLDKAIASSKDQY-DFEIRWH 52 (172)
Q Consensus 20 ~D~~CPwcyl~~~~L~~~~~~~~~~~-~~~v~~~ 52 (172)
---+||||+- +| .++|+... .|.|+..
T Consensus 150 ~g~l~p~~~~---~L---~~~y~Gd~~~~~V~r~ 177 (358)
T PF08298_consen 150 EGELCPWCRK---RL---LEEYGGDIEKFRVERL 177 (358)
T ss_pred CCCcCHHHHH---HH---HHHhCCCccEEEEEEE
Confidence 4568999983 33 34565433 3455443
No 208
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=23.08 E-value=31 Score=25.92 Aligned_cols=11 Identities=36% Similarity=1.437 Sum_probs=8.4
Q ss_pred ecCCcchhhhH
Q 030756 21 DTVCPWCFVGK 31 (172)
Q Consensus 21 D~~CPwcyl~~ 31 (172)
+.+||||-.-.
T Consensus 49 ~~lCPwCIAdG 59 (176)
T PF03691_consen 49 EYLCPWCIADG 59 (176)
T ss_pred cccCHhHhcCc
Confidence 57999998633
No 209
>COG4311 SoxD Sarcosine oxidase delta subunit [Amino acid transport and metabolism]
Probab=22.94 E-value=31 Score=23.13 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=6.2
Q ss_pred cCCcchhh
Q 030756 22 TVCPWCFV 29 (172)
Q Consensus 22 ~~CPwcyl 29 (172)
+.||||--
T Consensus 4 I~CP~Cg~ 11 (97)
T COG4311 4 IPCPYCGE 11 (97)
T ss_pred ecCCCCCC
Confidence 57999963
No 210
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=22.72 E-value=1.1e+02 Score=18.47 Aligned_cols=33 Identities=12% Similarity=-0.075 Sum_probs=20.3
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L 56 (172)
+++|+.+.||.|....-.| +. .+++++.+.+.+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l----~~----~g~~~~~~~v~~ 33 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFL----KL----NKIPFEECPIDL 33 (76)
T ss_pred CEEeeCCCChhHHHHHHHH----HH----cCCCcEEEEecC
Confidence 3689999999997543323 22 256666665543
No 211
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=21.94 E-value=90 Score=17.71 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756 127 LAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 127 ~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~ 163 (172)
--..++..++.+|. ...+||+..|++++.+.
T Consensus 14 ~~r~i~~l~~~~g~------s~~eIa~~l~~s~~~v~ 44 (54)
T PF08281_consen 14 RQREIFLLRYFQGM------SYAEIAEILGISESTVK 44 (54)
T ss_dssp HHHHHHHHHHTS---------HHHHHHHCTS-HHHHH
T ss_pred HHHHHHHHHHHHCc------CHHHHHHHHCcCHHHHH
Confidence 34677888888886 46789999999887654
No 212
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=21.93 E-value=2.6e+02 Score=18.97 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=27.6
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcCCC-CceEEEEe
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRWH 52 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~-~~~~v~~~ 52 (172)
++.+-+|+-.-||-|--..+.|.++.++++++ .+++|.+.
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V 58 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV 58 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 45556666788999998888888887777543 24555443
No 213
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=21.89 E-value=80 Score=20.64 Aligned_cols=19 Identities=5% Similarity=-0.167 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCCccccc
Q 030756 145 KCAYFSFDEFFFFFPSLVN 163 (172)
Q Consensus 145 ~~vL~~ia~~~Gld~~~~~ 163 (172)
.+.|.+.|+++|+++...+
T Consensus 23 ~~ELHafA~riGv~rr~fq 41 (83)
T PF13223_consen 23 LDELHAFAARIGVPRRWFQ 41 (83)
T ss_pred HHHHHHHHHHcCCCHHHHc
Confidence 3455555555555554333
No 214
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=21.83 E-value=77 Score=19.14 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhcCCCcccc
Q 030756 143 GDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 143 sd~~vL~~ia~~~Gld~~~~ 162 (172)
-|.+...++|.++||+...+
T Consensus 30 ~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 30 KRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred CCHHHHHHHHHHhCCCHHHe
Confidence 34668899999999987654
No 215
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=21.76 E-value=51 Score=19.70 Aligned_cols=17 Identities=18% Similarity=-0.256 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCcccc
Q 030756 146 CAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 146 ~vL~~ia~~~Gld~~~~ 162 (172)
..|.+++++.|+|++.+
T Consensus 32 ~~L~eA~~~~~ld~~~v 48 (56)
T PF04405_consen 32 RSLEEACEEKGLDPEEV 48 (56)
T ss_pred chHHHHHHHcCCCHHHH
Confidence 45777777777777654
No 216
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.66 E-value=1.2e+02 Score=18.72 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=21.9
Q ss_pred eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
+-+.|| -.-||.|....+.+.++.+.+.
T Consensus 35 ~~v~f~-~~~C~~C~~~~~~l~~~~~~~~ 62 (127)
T COG0526 35 VLVDFW-APWCPPCRAEAPLLEELAEEYG 62 (127)
T ss_pred EEEEEE-cCcCHHHHhhchhHHHHHHHhc
Confidence 334444 8999999999999998887664
No 217
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.60 E-value=1.9e+02 Score=21.67 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.5
Q ss_pred cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
+.+-|.|| -.-||+|---.+.|.++.++|++ .+++|
T Consensus 40 kvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~-~g~~v 75 (199)
T PTZ00056 40 KVLMITNS-ASKCGLTKKHVDQMNRLHSVFNP-LGLEI 75 (199)
T ss_pred CEEEEEEE-CCCCCChHHHHHHHHHHHHHHhc-CceEE
Confidence 34445555 47899998778889988888864 35655
No 218
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=21.52 E-value=1.2e+02 Score=23.91 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=35.4
Q ss_pred CccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756 7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (172)
Q Consensus 7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~ 54 (172)
|.+..-.+++-...+..|.+|.+-..+|+.+..++..+---+|.|.-+
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vV 68 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVV 68 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEE
Confidence 445556788888999999999998899998887765443336666443
No 219
>PRK10174 hypothetical protein; Provisional
Probab=21.23 E-value=1.1e+02 Score=19.23 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=13.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhc
Q 030756 130 ELFLGYFTQGKYIGDKCAYFSFDEFF 155 (172)
Q Consensus 130 al~~a~~~eg~disd~~vL~~ia~~~ 155 (172)
.|-+.+|++| +.+||.....+.
T Consensus 37 ~lAe~IWeeG----sDevL~~AF~KT 58 (75)
T PRK10174 37 KLAEKIWEEG----SDEVLVKAFAKT 58 (75)
T ss_pred HHHHHHHHhc----chHHHHHHHhcc
Confidence 3445678876 456776665554
No 220
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=21.22 E-value=2.2e+02 Score=18.64 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (172)
Q Consensus 13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~ 42 (172)
+..+-.|+-+-||.|--..+.+.++.+.++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~ 51 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLA 51 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 455666667779999998889998887775
No 221
>PF00051 Kringle: Kringle domain; InterPro: IPR000001 Kringles are autonomous structural domains, found throughout the blood clotting and fibrinolytic proteins. Kringle domains are believed to play a role in binding mediators (e.g., membranes, other proteins or phospholipids), and in the regulation of proteolytic activity [, , ]. Kringle domains [, , ] are characterised by a triple loop, 3-disulphide bridge structure, whose conformation is defined by a number of hydrogen bonds and small pieces of anti-parallel beta-sheet. They are found in a varying number of copies in some plasma proteins including prothrombin and urokinase-type plasminogen activator, which are serine proteases belonging to MEROPS peptidase family S1A. Steroid or nuclear hormone receptors (4A nuclear receptor, NRs) constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members of the superfamily include the steroid hormone receptors and receptors for thyroid hormone, retinoids, 1,25-dihydroxy-vitamin D3 and a variety of other ligands []. The proteins function as dimeric molecules in nuclei to regulate the transcription of target genes in a ligand-responsive manner [, ]. In addition to C-terminal ligand-binding domains, these nuclear receptors contain a highly-conserved, N-terminal zinc-finger that mediates specific binding to target DNA sequences, termed ligand-responsive elements. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes, hormone resistance syndromes, etc. While several NRs act as ligand-inducible transcription factors, many do not yet have a defined ligand and are accordingly termed 'orphan' receptors. During the last decade, more than 300 NRs have been described, many of which are orphans, which cannot easily be named due to current nomenclature confusions in the literature. However, a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members.; PDB: 1JFN_A 3HN4_A 2FEB_A 4A5T_S 5HPG_B 4DUR_B 4DUU_A 2KNF_A 2QJ4_B 2QJ2_A ....
Probab=21.11 E-value=31 Score=21.85 Aligned_cols=9 Identities=44% Similarity=1.538 Sum_probs=7.0
Q ss_pred EecCCcchhh
Q 030756 20 SDTVCPWCFV 29 (172)
Q Consensus 20 ~D~~CPwcyl 29 (172)
.|.. ||||.
T Consensus 56 ~~~~-PWCy~ 64 (79)
T PF00051_consen 56 GDPR-PWCYT 64 (79)
T ss_dssp SCSS-SEEEB
T ss_pred CCCC-cceEe
Confidence 4566 99998
No 222
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.07 E-value=74 Score=19.02 Aligned_cols=23 Identities=4% Similarity=-0.076 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHhcCCCcccc
Q 030756 140 KYIGDKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 140 ~disd~~vL~~ia~~~Gld~~~~ 162 (172)
.|++++..+.-.+.++|++++++
T Consensus 15 I~~~e~~ev~ywa~~~gvt~~~L 37 (57)
T PF12244_consen 15 IDLSEPYEVRYWAKRFGVTEEQL 37 (57)
T ss_pred cCCCCHHHHHHHHHHHCcCHHHH
Confidence 35666666666666666665543
No 223
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=21.03 E-value=60 Score=20.25 Aligned_cols=19 Identities=16% Similarity=-0.302 Sum_probs=15.8
Q ss_pred CHHHHHHHHHhcCCCcccc
Q 030756 144 DKCAYFSFDEFFFFFPSLV 162 (172)
Q Consensus 144 d~~vL~~ia~~~Gld~~~~ 162 (172)
-.++|.+||++.|.|.+.+
T Consensus 6 ~~e~i~~iA~~t~~P~e~V 24 (66)
T PF12085_consen 6 VDEVIRSIAEETGTPAETV 24 (66)
T ss_pred HHHHHHHHHHHHCCCHHHH
Confidence 3578999999999998755
No 224
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=67 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.615 Sum_probs=13.8
Q ss_pred EecCCcchhhhHHHHHHHHH
Q 030756 20 SDTVCPWCFVGKRNLDKAIA 39 (172)
Q Consensus 20 ~D~~CPwcyl~~~~L~~~~~ 39 (172)
.+.+|+|||.-...+-.-+.
T Consensus 105 a~~LC~~Cy~kV~ket~ei~ 124 (176)
T KOG4080|consen 105 AHTLCDYCYAKVHKETSEIK 124 (176)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 57899999976555544443
No 225
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.55 E-value=1.9e+02 Score=21.22 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=23.8
Q ss_pred EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEE
Q 030756 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (172)
Q Consensus 16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v 49 (172)
|-++.-.-||.|---.+.|.++.++|++ .++.|
T Consensus 45 lv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~v 77 (183)
T PTZ00256 45 IVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEI 77 (183)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEE
Confidence 3444577899998888889988888864 35555
Done!