Query 030757
Match_columns 172
No_of_seqs 188 out of 2196
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 2.8E-19 6.2E-24 143.6 7.5 77 79-158 202-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 5.2E-16 1.1E-20 90.0 2.4 44 109-153 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.5 9.1E-15 2E-19 113.0 4.4 84 83-168 149-236 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.4 7.1E-13 1.5E-17 106.4 5.3 57 106-162 285-350 (491)
5 KOG0317 Predicted E3 ubiquitin 99.4 9E-13 1.9E-17 102.8 5.3 57 103-163 234-290 (293)
6 PF12678 zf-rbx1: RING-H2 zinc 99.3 1E-12 2.2E-17 84.3 4.0 46 108-153 19-73 (73)
7 COG5540 RING-finger-containing 99.3 1.6E-12 3.4E-17 102.0 3.4 51 107-158 322-373 (374)
8 PLN03208 E3 ubiquitin-protein 99.2 8.1E-12 1.7E-16 93.2 4.3 56 106-165 16-87 (193)
9 KOG0320 Predicted E3 ubiquitin 99.2 1.9E-11 4E-16 89.3 3.6 57 105-163 128-184 (187)
10 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.2E-11 4.8E-16 72.3 3.3 46 108-157 2-48 (50)
11 KOG0823 Predicted E3 ubiquitin 99.2 2.8E-11 6E-16 91.9 3.8 58 105-166 44-104 (230)
12 PHA02926 zinc finger-like prot 99.1 7.9E-11 1.7E-15 89.1 6.0 61 106-168 168-239 (242)
13 KOG0802 E3 ubiquitin ligase [P 99.1 1.1E-10 2.3E-15 101.0 6.1 60 107-167 290-351 (543)
14 PF13923 zf-C3HC4_2: Zinc fing 99.1 1.2E-10 2.7E-15 65.5 3.1 39 111-152 1-39 (39)
15 cd00162 RING RING-finger (Real 99.0 2.1E-10 4.5E-15 65.7 3.4 44 110-156 1-45 (45)
16 KOG1734 Predicted RING-contain 99.0 9.4E-10 2E-14 85.2 7.0 60 106-166 222-290 (328)
17 PF12861 zf-Apc11: Anaphase-pr 99.0 2.7E-10 5.8E-15 74.1 3.3 52 108-159 21-84 (85)
18 smart00504 Ubox Modified RING 98.9 8.8E-10 1.9E-14 68.3 3.8 52 109-164 2-53 (63)
19 PF14634 zf-RING_5: zinc-RING 98.9 7.6E-10 1.7E-14 63.9 2.9 44 110-154 1-44 (44)
20 PF15227 zf-C3HC4_4: zinc fing 98.9 1E-09 2.2E-14 62.8 3.4 38 111-152 1-42 (42)
21 PF00097 zf-C3HC4: Zinc finger 98.9 2.6E-09 5.6E-14 60.6 3.2 39 111-152 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.8 2.2E-09 4.7E-14 88.8 3.5 55 106-164 24-78 (397)
23 smart00184 RING Ring finger. E 98.7 8.1E-09 1.8E-13 57.0 3.0 38 111-152 1-39 (39)
24 PF13445 zf-RING_UBOX: RING-ty 98.7 9.3E-09 2E-13 58.9 2.6 35 111-146 1-35 (43)
25 KOG0828 Predicted E3 ubiquitin 98.7 2.3E-08 4.9E-13 83.4 5.2 52 107-158 570-635 (636)
26 KOG0287 Postreplication repair 98.6 9.8E-09 2.1E-13 82.0 1.0 55 107-165 22-76 (442)
27 COG5194 APC11 Component of SCF 98.6 2.8E-08 6E-13 63.3 2.7 51 109-159 21-83 (88)
28 COG5574 PEX10 RING-finger-cont 98.6 3E-08 6.4E-13 76.9 3.0 52 106-161 213-266 (271)
29 KOG2164 Predicted E3 ubiquitin 98.5 4E-08 8.7E-13 82.4 2.5 52 108-163 186-242 (513)
30 PF04564 U-box: U-box domain; 98.5 1.5E-07 3.2E-12 60.3 3.4 54 107-164 3-57 (73)
31 KOG1493 Anaphase-promoting com 98.5 3E-08 6.4E-13 62.6 -0.1 51 108-158 20-82 (84)
32 KOG2930 SCF ubiquitin ligase, 98.4 1.1E-07 2.3E-12 63.6 2.1 53 107-159 45-110 (114)
33 TIGR00570 cdk7 CDK-activating 98.4 2.2E-07 4.8E-12 74.3 3.8 56 108-164 3-61 (309)
34 COG5432 RAD18 RING-finger-cont 98.4 1.2E-07 2.5E-12 74.5 2.0 54 107-164 24-77 (391)
35 KOG4265 Predicted E3 ubiquitin 98.4 1.8E-07 4E-12 75.4 2.9 48 106-157 288-336 (349)
36 smart00744 RINGv The RING-vari 98.3 5.9E-07 1.3E-11 52.9 2.8 42 110-153 1-49 (49)
37 KOG4172 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 55.1 0.3 46 108-157 7-54 (62)
38 PF11793 FANCL_C: FANCL C-term 98.2 1.9E-07 4.2E-12 59.2 -0.6 51 108-158 2-67 (70)
39 COG5219 Uncharacterized conser 98.2 4.5E-07 9.7E-12 80.9 1.3 54 105-158 1466-1524(1525)
40 PF14835 zf-RING_6: zf-RING of 98.1 5.1E-07 1.1E-11 55.5 -0.3 52 109-165 8-59 (65)
41 KOG0804 Cytoplasmic Zn-finger 98.1 1.4E-06 3E-11 72.1 1.4 50 107-158 174-223 (493)
42 KOG0827 Predicted E3 ubiquitin 98.0 2.2E-06 4.7E-11 69.9 2.1 49 109-157 5-56 (465)
43 KOG2177 Predicted E3 ubiquitin 98.0 2.4E-06 5.1E-11 67.5 2.0 45 106-154 11-55 (386)
44 KOG1039 Predicted E3 ubiquitin 98.0 4.7E-06 1E-10 68.0 2.5 52 106-157 159-221 (344)
45 KOG1645 RING-finger-containing 97.9 4.3E-06 9.3E-11 68.6 2.0 57 107-163 3-62 (463)
46 KOG0978 E3 ubiquitin ligase in 97.9 3.7E-06 8.1E-11 73.7 1.4 53 107-163 642-695 (698)
47 KOG0824 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 63.5 1.9 49 108-160 7-56 (324)
48 KOG1785 Tyrosine kinase negati 97.6 1.9E-05 4.1E-10 64.8 1.4 49 108-160 369-419 (563)
49 KOG2879 Predicted E3 ubiquitin 97.6 0.00042 9.1E-09 54.4 7.9 53 102-157 233-287 (298)
50 KOG0825 PHD Zn-finger protein 97.6 1.8E-05 3.9E-10 69.7 0.2 53 108-161 123-175 (1134)
51 KOG1571 Predicted E3 ubiquitin 97.5 1.1E-05 2.3E-10 65.4 -1.8 46 105-157 302-347 (355)
52 KOG4159 Predicted E3 ubiquitin 97.5 8E-05 1.7E-09 62.0 3.0 49 106-158 82-130 (398)
53 KOG0311 Predicted E3 ubiquitin 97.4 2.1E-05 4.5E-10 63.6 -0.9 52 107-161 42-94 (381)
54 KOG3039 Uncharacterized conser 97.3 0.00023 4.9E-09 55.1 3.6 57 107-163 220-276 (303)
55 KOG1941 Acetylcholine receptor 97.3 9.6E-05 2.1E-09 60.6 1.0 48 107-154 364-413 (518)
56 KOG4445 Uncharacterized conser 97.3 9.1E-05 2E-09 58.8 0.8 52 107-159 114-188 (368)
57 KOG0826 Predicted E3 ubiquitin 97.2 0.00076 1.6E-08 54.2 5.5 66 95-163 287-352 (357)
58 KOG1428 Inhibitor of type V ad 97.2 0.00019 4.1E-09 67.2 1.9 57 105-162 3483-3549(3738)
59 PF11789 zf-Nse: Zinc-finger o 97.2 0.00039 8.5E-09 42.2 2.7 42 107-151 10-53 (57)
60 COG5152 Uncharacterized conser 97.1 0.00031 6.8E-09 52.7 1.9 48 107-158 195-242 (259)
61 KOG0297 TNF receptor-associate 97.0 0.00034 7.3E-09 58.5 1.8 53 106-162 19-72 (391)
62 PF05883 Baculo_RING: Baculovi 96.8 0.00069 1.5E-08 47.9 1.8 38 108-146 26-69 (134)
63 KOG2660 Locus-specific chromos 96.8 0.00038 8.1E-09 56.0 0.5 55 106-163 13-67 (331)
64 PF04641 Rtf2: Rtf2 RING-finge 96.8 0.0022 4.7E-08 50.8 4.6 58 105-163 110-167 (260)
65 KOG4692 Predicted E3 ubiquitin 96.7 0.0017 3.7E-08 52.8 3.7 52 106-161 420-471 (489)
66 KOG3970 Predicted E3 ubiquitin 96.6 0.0018 3.9E-08 49.6 3.2 50 108-159 50-107 (299)
67 KOG1814 Predicted E3 ubiquitin 96.6 0.0013 2.8E-08 54.4 2.1 37 107-144 183-219 (445)
68 KOG4275 Predicted E3 ubiquitin 96.6 0.00035 7.6E-09 55.3 -1.2 42 108-157 300-342 (350)
69 PHA02825 LAP/PHD finger-like p 96.5 0.0029 6.2E-08 46.0 3.4 49 106-159 6-61 (162)
70 PHA02862 5L protein; Provision 96.5 0.0019 4.1E-08 46.1 2.3 46 108-158 2-54 (156)
71 KOG2114 Vacuolar assembly/sort 96.5 0.00064 1.4E-08 60.7 -0.3 44 107-156 839-882 (933)
72 KOG4739 Uncharacterized protei 96.5 0.00094 2E-08 51.6 0.6 55 110-168 5-59 (233)
73 PF12906 RINGv: RING-variant d 96.5 0.0013 2.8E-08 38.3 1.0 40 111-152 1-47 (47)
74 PF14570 zf-RING_4: RING/Ubox 96.4 0.0026 5.7E-08 37.0 2.3 45 111-156 1-47 (48)
75 KOG1002 Nucleotide excision re 96.4 0.0019 4.1E-08 55.2 2.0 48 107-158 535-587 (791)
76 PF10367 Vps39_2: Vacuolar sor 96.3 0.0014 2.9E-08 44.5 0.8 32 107-140 77-108 (109)
77 KOG0801 Predicted E3 ubiquitin 96.3 0.0013 2.9E-08 47.8 0.6 29 107-136 176-204 (205)
78 KOG4185 Predicted E3 ubiquitin 96.3 0.0029 6.3E-08 50.8 2.5 48 109-156 4-54 (296)
79 KOG1952 Transcription factor N 96.1 0.0027 5.8E-08 56.9 1.7 51 107-157 190-247 (950)
80 KOG1813 Predicted E3 ubiquitin 96.1 0.0027 5.9E-08 50.4 1.4 47 107-157 240-286 (313)
81 KOG1940 Zn-finger protein [Gen 95.9 0.0034 7.4E-08 49.8 1.4 47 108-154 158-204 (276)
82 PF08746 zf-RING-like: RING-li 95.9 0.007 1.5E-07 34.5 2.1 41 111-152 1-43 (43)
83 PHA03096 p28-like protein; Pro 95.8 0.005 1.1E-07 49.3 1.7 47 109-155 179-232 (284)
84 PF14447 Prok-RING_4: Prokaryo 95.7 0.0051 1.1E-07 36.7 1.2 46 109-160 8-53 (55)
85 COG5236 Uncharacterized conser 95.7 0.012 2.6E-07 48.0 3.7 50 105-158 58-109 (493)
86 KOG0827 Predicted E3 ubiquitin 95.0 0.001 2.3E-08 54.6 -4.6 57 107-164 195-252 (465)
87 COG5175 MOT2 Transcriptional r 94.9 0.019 4.1E-07 46.7 2.3 55 107-161 13-68 (480)
88 PF07800 DUF1644: Protein of u 94.8 0.027 5.9E-07 40.9 2.7 54 108-162 2-96 (162)
89 KOG3002 Zn finger protein [Gen 94.6 0.021 4.5E-07 46.1 1.9 43 107-157 47-91 (299)
90 KOG2932 E3 ubiquitin ligase in 94.6 0.016 3.4E-07 46.6 1.2 44 109-157 91-134 (389)
91 KOG3800 Predicted E3 ubiquitin 94.5 0.032 6.9E-07 44.4 2.8 55 110-164 2-58 (300)
92 COG5220 TFB3 Cdk activating ki 94.4 0.014 3E-07 45.3 0.5 62 107-168 9-75 (314)
93 KOG3268 Predicted E3 ubiquitin 94.0 0.042 9.1E-07 40.8 2.4 31 128-158 188-229 (234)
94 KOG1001 Helicase-like transcri 93.9 0.017 3.6E-07 51.6 0.0 50 109-163 455-506 (674)
95 COG5183 SSM4 Protein involved 93.2 0.077 1.7E-06 47.8 2.9 56 105-162 9-71 (1175)
96 COG5222 Uncharacterized conser 92.8 0.069 1.5E-06 42.8 2.0 51 109-162 275-327 (427)
97 KOG1100 Predicted E3 ubiquitin 92.4 0.051 1.1E-06 41.6 0.7 39 111-157 161-200 (207)
98 PF03854 zf-P11: P-11 zinc fin 92.4 0.058 1.2E-06 31.2 0.8 42 110-157 4-46 (50)
99 KOG0309 Conserved WD40 repeat- 92.2 0.093 2E-06 47.0 2.2 40 110-151 1030-1069(1081)
100 KOG3053 Uncharacterized conser 92.2 0.073 1.6E-06 41.7 1.3 51 106-157 18-82 (293)
101 PF14446 Prok-RING_1: Prokaryo 92.0 0.15 3.3E-06 30.4 2.3 34 108-141 5-38 (54)
102 KOG2034 Vacuolar sorting prote 92.0 0.076 1.6E-06 48.2 1.4 35 107-143 816-850 (911)
103 KOG2817 Predicted E3 ubiquitin 91.1 0.22 4.8E-06 41.3 3.1 57 106-163 332-391 (394)
104 KOG0298 DEAD box-containing he 90.5 0.43 9.4E-06 45.2 4.8 44 108-154 1153-1196(1394)
105 KOG3899 Uncharacterized conser 90.4 0.15 3.2E-06 40.8 1.5 34 130-163 325-371 (381)
106 PF05290 Baculo_IE-1: Baculovi 89.9 0.27 5.9E-06 34.8 2.3 54 107-160 79-135 (140)
107 KOG3113 Uncharacterized conser 89.6 0.48 1E-05 37.2 3.7 55 107-163 110-164 (293)
108 PF10272 Tmpp129: Putative tra 89.4 0.23 5E-06 41.1 1.9 30 131-160 312-354 (358)
109 KOG1609 Protein involved in mR 88.9 0.33 7.2E-06 38.9 2.5 53 107-159 77-136 (323)
110 KOG4362 Transcriptional regula 87.3 0.16 3.5E-06 45.1 -0.3 51 108-162 21-74 (684)
111 PF02891 zf-MIZ: MIZ/SP-RING z 86.7 0.87 1.9E-05 26.6 2.7 43 109-155 3-50 (50)
112 KOG1812 Predicted E3 ubiquitin 86.2 0.31 6.6E-06 40.9 0.8 38 107-145 145-183 (384)
113 KOG3161 Predicted E3 ubiquitin 83.6 0.44 9.6E-06 42.1 0.7 44 109-155 12-55 (861)
114 KOG4367 Predicted Zn-finger pr 82.6 0.8 1.7E-05 38.8 1.8 36 106-145 2-37 (699)
115 KOG0269 WD40 repeat-containing 81.9 1.4 3.1E-05 39.7 3.1 48 109-158 780-829 (839)
116 KOG3005 GIY-YIG type nuclease 79.0 0.52 1.1E-05 37.3 -0.4 55 109-163 183-249 (276)
117 PF13901 DUF4206: Domain of un 78.1 1.5 3.3E-05 33.4 1.9 41 108-154 152-197 (202)
118 smart00249 PHD PHD zinc finger 78.0 1.1 2.4E-05 24.7 0.9 30 111-141 2-31 (47)
119 KOG2807 RNA polymerase II tran 77.2 2.2 4.8E-05 34.8 2.6 56 97-154 319-375 (378)
120 PF11674 DUF3270: Protein of u 75.6 5 0.00011 26.5 3.5 47 3-56 19-65 (90)
121 KOG1829 Uncharacterized conser 74.5 0.83 1.8E-05 40.1 -0.4 43 107-153 510-557 (580)
122 KOG4718 Non-SMC (structural ma 74.0 1.8 3.9E-05 33.1 1.3 45 107-154 180-224 (235)
123 KOG4185 Predicted E3 ubiquitin 71.4 0.72 1.6E-05 37.0 -1.5 49 107-155 206-265 (296)
124 COG5109 Uncharacterized conser 70.9 3.9 8.4E-05 33.3 2.5 56 107-163 335-393 (396)
125 PF14569 zf-UDP: Zinc-binding 70.7 6.3 0.00014 25.3 3.0 51 107-157 8-62 (80)
126 KOG1815 Predicted E3 ubiquitin 69.9 2.9 6.4E-05 35.7 1.8 53 106-161 68-130 (444)
127 PF01708 Gemini_mov: Geminivir 69.1 7.5 0.00016 25.6 3.2 10 7-16 6-15 (91)
128 KOG0802 E3 ubiquitin ligase [P 68.8 2.7 5.9E-05 36.8 1.4 50 107-164 478-527 (543)
129 KOG0825 PHD Zn-finger protein 68.6 3.2 6.9E-05 37.9 1.8 52 107-158 95-155 (1134)
130 KOG2068 MOT2 transcription fac 68.6 4.4 9.6E-05 33.1 2.5 51 108-158 249-299 (327)
131 PF07975 C1_4: TFIIH C1-like d 67.7 5.8 0.00013 23.3 2.2 42 111-153 2-50 (51)
132 KOG2066 Vacuolar assembly/sort 67.2 2.1 4.5E-05 38.9 0.4 44 107-152 783-830 (846)
133 PF00412 LIM: LIM domain; Int 67.2 5.1 0.00011 23.4 2.0 40 111-160 1-40 (58)
134 PF06906 DUF1272: Protein of u 64.4 11 0.00025 22.5 3.0 47 109-159 6-54 (57)
135 PF11023 DUF2614: Protein of u 64.3 42 0.00091 23.1 6.2 25 143-167 82-106 (114)
136 smart00132 LIM Zinc-binding do 62.4 8.8 0.00019 20.0 2.3 37 111-157 2-38 (39)
137 TIGR00622 ssl1 transcription f 62.2 12 0.00026 25.8 3.3 45 109-153 56-110 (112)
138 PLN02189 cellulose synthase 60.2 6.3 0.00014 37.1 2.1 51 107-157 33-87 (1040)
139 PF04423 Rad50_zn_hook: Rad50 59.8 3.1 6.7E-05 24.5 0.1 13 148-160 22-34 (54)
140 KOG3842 Adaptor protein Pellin 59.7 12 0.00026 30.6 3.4 54 107-160 340-417 (429)
141 PF04710 Pellino: Pellino; In 59.3 3.1 6.6E-05 34.9 0.0 31 126-159 305-341 (416)
142 PLN02436 cellulose synthase A 59.3 6.6 0.00014 37.1 2.1 51 107-157 35-89 (1094)
143 PF05568 ASFV_J13L: African sw 58.9 27 0.00059 25.3 4.7 17 26-42 20-36 (189)
144 KOG0824 Predicted E3 ubiquitin 58.4 5.5 0.00012 32.2 1.3 51 105-158 102-152 (324)
145 KOG3579 Predicted E3 ubiquitin 58.1 4.3 9.4E-05 32.6 0.6 47 107-157 267-328 (352)
146 PF14927 Neurensin: Neurensin 57.7 41 0.00088 24.2 5.5 32 26-59 32-63 (140)
147 PF00628 PHD: PHD-finger; Int 57.5 4.8 0.0001 23.0 0.6 43 110-153 1-49 (51)
148 KOG3039 Uncharacterized conser 57.1 8.3 0.00018 30.4 2.0 34 107-144 42-75 (303)
149 PF06750 DiS_P_DiS: Bacterial 55.9 40 0.00086 22.2 4.9 37 109-158 34-70 (92)
150 KOG1812 Predicted E3 ubiquitin 53.6 6.6 0.00014 33.0 1.1 72 80-152 276-351 (384)
151 PF03579 SHP: Small hydrophobi 52.2 46 0.001 20.0 4.2 26 31-57 13-38 (64)
152 PLN02915 cellulose synthase A 52.0 13 0.00028 35.2 2.7 51 107-157 14-68 (1044)
153 PF01363 FYVE: FYVE zinc finge 51.9 5.9 0.00013 24.3 0.4 37 107-143 8-44 (69)
154 PF00558 Vpu: Vpu protein; In 51.3 37 0.00081 22.0 4.0 9 86-94 40-48 (81)
155 cd00065 FYVE FYVE domain; Zinc 50.9 12 0.00026 21.8 1.7 36 109-144 3-38 (57)
156 PF06667 PspB: Phage shock pro 50.6 64 0.0014 20.5 5.1 13 81-93 33-45 (75)
157 PF10083 DUF2321: Uncharacteri 49.6 12 0.00027 27.2 1.8 48 112-162 8-55 (158)
158 smart00064 FYVE Protein presen 49.1 15 0.00034 22.3 2.0 37 108-144 10-46 (68)
159 PF15145 DUF4577: Domain of un 48.8 11 0.00024 25.9 1.4 15 82-96 102-116 (128)
160 PLN02638 cellulose synthase A 48.6 12 0.00026 35.4 2.0 51 107-157 16-70 (1079)
161 PF11044 TMEMspv1-c74-12: Plec 47.3 53 0.0011 18.7 3.8 19 38-56 6-24 (49)
162 cd00350 rubredoxin_like Rubred 46.1 9.5 0.00021 20.0 0.6 10 146-155 17-26 (33)
163 PLN02833 glycerol acyltransfer 45.9 66 0.0014 27.0 5.8 19 11-29 60-78 (376)
164 PF07191 zinc-ribbons_6: zinc- 44.5 1.6 3.5E-05 27.4 -2.9 40 109-157 2-41 (70)
165 PF13240 zinc_ribbon_2: zinc-r 44.4 3.3 7.2E-05 20.0 -1.3 6 149-154 16-21 (23)
166 PF14311 DUF4379: Domain of un 43.0 15 0.00033 21.5 1.2 23 129-152 33-55 (55)
167 KOG2041 WD40 repeat protein [G 43.0 36 0.00078 31.3 3.9 30 125-158 1157-1186(1189)
168 KOG2979 Protein involved in DN 42.5 16 0.00035 28.9 1.6 45 108-155 176-222 (262)
169 PHA02673 ORF109 EEV glycoprote 42.0 44 0.00095 24.5 3.6 16 31-46 30-45 (161)
170 PF07649 C1_3: C1-like domain; 40.9 26 0.00056 17.7 1.8 29 110-139 2-30 (30)
171 PLN02400 cellulose synthase 40.6 14 0.0003 35.1 1.1 51 107-157 35-89 (1085)
172 KOG4583 Membrane-associated ER 40.3 71 0.0015 26.5 5.0 28 35-62 274-301 (391)
173 PLN02195 cellulose synthase A 39.7 27 0.0006 32.9 2.8 52 107-158 5-60 (977)
174 KOG3249 Uncharacterized conser 39.6 1.6E+02 0.0034 21.9 8.2 8 54-61 126-133 (181)
175 PF07069 PRRSV_2b: Porcine rep 39.3 90 0.002 19.0 5.8 30 42-71 31-60 (73)
176 PF04216 FdhE: Protein involve 39.2 3.6 7.8E-05 33.0 -2.5 49 107-155 171-220 (290)
177 PRK09458 pspB phage shock prot 38.5 1E+02 0.0023 19.6 4.5 12 82-93 34-45 (75)
178 PF13719 zinc_ribbon_5: zinc-r 38.4 20 0.00043 19.3 1.1 13 110-122 4-16 (37)
179 KOG3653 Transforming growth fa 38.3 80 0.0017 27.5 5.2 8 137-144 293-300 (534)
180 PRK09174 F0F1 ATP synthase sub 37.4 79 0.0017 24.1 4.7 22 25-46 45-66 (204)
181 PF03303 WTF: WTF protein; In 37.0 2.1E+02 0.0044 22.5 7.1 38 12-49 68-105 (247)
182 PF06937 EURL: EURL protein; 36.6 41 0.0009 26.8 3.0 50 107-158 29-80 (285)
183 PF04835 Pox_A9: A9 protein co 36.6 93 0.002 18.4 3.8 20 40-59 26-45 (54)
184 PF06844 DUF1244: Protein of u 36.3 24 0.00052 21.9 1.3 11 134-144 12-22 (68)
185 PRK02251 putative septation in 35.7 1.3E+02 0.0028 19.8 5.3 20 29-48 31-50 (87)
186 KOG2113 Predicted RNA binding 35.3 33 0.00072 28.1 2.4 44 107-156 342-386 (394)
187 PF13832 zf-HC5HC2H_2: PHD-zin 35.2 30 0.00065 23.1 1.9 34 108-142 55-88 (110)
188 PF10571 UPF0547: Uncharacteri 34.9 8.3 0.00018 19.3 -0.7 7 111-117 3-9 (26)
189 smart00734 ZnF_Rad18 Rad18-lik 34.9 9.6 0.00021 18.9 -0.5 11 148-158 3-13 (26)
190 TIGR02976 phageshock_pspB phag 34.3 1.2E+02 0.0027 19.2 5.0 12 82-93 34-45 (75)
191 PHA03093 EEV glycoprotein; Pro 33.3 72 0.0016 24.0 3.7 18 31-48 33-50 (185)
192 KOG2231 Predicted E3 ubiquitin 33.0 32 0.00069 31.1 2.1 47 110-160 2-55 (669)
193 COG4306 Uncharacterized protei 31.9 30 0.00064 24.4 1.4 27 133-162 29-55 (160)
194 PF09723 Zn-ribbon_8: Zinc rib 31.8 7.8 0.00017 21.6 -1.2 25 129-154 10-34 (42)
195 PHA02909 hypothetical protein; 31.7 1.2E+02 0.0026 18.2 4.5 15 31-45 30-44 (72)
196 PF05715 zf-piccolo: Piccolo Z 31.3 31 0.00068 20.9 1.2 11 147-157 3-13 (61)
197 PRK06569 F0F1 ATP synthase sub 30.9 94 0.002 22.7 4.0 16 31-46 8-23 (155)
198 PF13717 zinc_ribbon_4: zinc-r 30.5 34 0.00075 18.3 1.2 13 110-122 4-16 (36)
199 PF10497 zf-4CXXC_R1: Zinc-fin 30.3 55 0.0012 22.2 2.5 25 131-155 37-70 (105)
200 PF15102 TMEM154: TMEM154 prot 30.1 11 0.00024 27.2 -1.0 11 135-145 126-136 (146)
201 PF07234 DUF1426: Protein of u 29.8 1.5E+02 0.0032 20.0 4.3 24 36-59 12-35 (117)
202 KOG4577 Transcription factor L 29.7 14 0.00031 29.7 -0.5 40 108-157 92-131 (383)
203 PRK12705 hypothetical protein; 29.7 1.1E+02 0.0024 26.8 4.8 26 43-68 4-29 (508)
204 PF12729 4HB_MCP_1: Four helix 29.7 1.9E+02 0.0042 20.0 5.9 31 34-64 3-33 (181)
205 KOG2169 Zn-finger transcriptio 29.3 57 0.0012 29.4 3.1 50 107-164 305-363 (636)
206 PRK14584 hmsS hemin storage sy 29.2 2.3E+02 0.005 20.7 6.7 9 82-90 97-105 (153)
207 smart00647 IBR In Between Ring 29.0 11 0.00024 22.3 -1.0 14 129-142 45-58 (64)
208 PF07850 Renin_r: Renin recept 29.0 18 0.0004 24.3 0.0 21 26-46 48-68 (98)
209 PF00584 SecE: SecE/Sec61-gamm 28.3 1.3E+02 0.0028 17.5 4.5 22 34-55 26-47 (57)
210 PF13994 PgaD: PgaD-like prote 28.1 2.2E+02 0.0047 20.1 6.0 7 84-90 101-107 (138)
211 KOG1729 FYVE finger containing 27.9 12 0.00025 30.3 -1.3 39 108-147 214-252 (288)
212 PF01396 zf-C4_Topoisom: Topoi 27.7 29 0.00063 18.9 0.7 19 148-166 3-21 (39)
213 PF14169 YdjO: Cold-inducible 27.5 34 0.00075 20.7 1.0 12 147-158 40-51 (59)
214 COG4357 Zinc finger domain con 27.4 52 0.0011 22.0 1.9 28 130-158 65-92 (105)
215 PF06637 PV-1: PV-1 protein (P 27.4 1.2E+02 0.0026 25.6 4.4 28 34-61 22-49 (442)
216 PF13771 zf-HC5HC2H: PHD-like 27.3 41 0.00089 21.5 1.5 33 108-141 36-68 (90)
217 PF09889 DUF2116: Uncharacteri 27.2 37 0.00081 20.5 1.1 16 145-160 2-17 (59)
218 COG4847 Uncharacterized protei 27.2 64 0.0014 21.6 2.3 33 109-143 7-39 (103)
219 COG5627 MMS21 DNA repair prote 26.5 32 0.00069 27.0 0.9 41 108-151 189-231 (275)
220 KOG2447 Oligosaccharyltransfer 26.2 1.2E+02 0.0026 24.4 4.0 28 24-51 190-217 (287)
221 PF02038 ATP1G1_PLM_MAT8: ATP1 26.2 1.2E+02 0.0025 17.8 3.0 27 32-58 7-33 (50)
222 PF13453 zf-TFIIB: Transcripti 26.2 27 0.00059 19.1 0.4 14 148-161 1-14 (41)
223 KOG4323 Polycomb-like PHD Zn-f 26.0 27 0.00057 30.1 0.4 56 107-162 167-231 (464)
224 PHA02849 putative transmembran 25.2 1.9E+02 0.0042 18.5 4.4 11 88-98 62-72 (82)
225 PF10146 zf-C4H2: Zinc finger- 24.5 53 0.0012 25.6 1.8 26 134-159 196-221 (230)
226 PF13131 DUF3951: Protein of u 23.9 1.6E+02 0.0036 17.2 3.4 10 49-58 15-24 (53)
227 PF15176 LRR19-TM: Leucine-ric 23.8 2.4E+02 0.0051 19.1 4.5 23 25-47 9-31 (102)
228 PF12263 DUF3611: Protein of u 23.7 3.2E+02 0.0069 20.5 7.5 44 47-90 58-101 (183)
229 PRK01343 zinc-binding protein; 23.7 46 0.001 20.0 1.0 11 147-157 10-20 (57)
230 PF06643 DUF1158: Protein of u 23.6 2E+02 0.0044 18.2 4.6 27 42-68 51-77 (82)
231 PF11807 DUF3328: Domain of un 23.5 2.3E+02 0.0049 20.7 5.1 9 151-159 175-183 (217)
232 TIGR00964 secE_bact preprotein 23.4 1.4E+02 0.0031 17.4 3.2 21 34-54 25-45 (55)
233 KOG4451 Uncharacterized conser 23.4 66 0.0014 25.1 2.1 28 133-160 250-277 (286)
234 PF15145 DUF4577: Domain of un 23.1 2.3E+02 0.005 19.6 4.4 18 30-47 57-74 (128)
235 COG5488 Integral membrane prot 23.1 2.9E+02 0.0062 20.2 5.1 30 26-55 25-54 (164)
236 PRK11088 rrmA 23S rRNA methylt 22.7 53 0.0012 25.8 1.6 25 109-134 3-27 (272)
237 KOG2071 mRNA cleavage and poly 22.6 41 0.00089 29.8 0.9 38 106-143 511-557 (579)
238 PF15122 TMEM206: TMEM206 prot 22.4 3.4E+02 0.0074 21.6 5.8 12 126-137 71-82 (298)
239 PRK03564 formate dehydrogenase 22.4 32 0.0007 28.1 0.3 47 107-154 186-234 (309)
240 KOG0006 E3 ubiquitin-protein l 22.1 77 0.0017 26.1 2.3 44 108-164 221-266 (446)
241 PF10176 DUF2370: Protein of u 22.0 2.7E+02 0.0059 21.8 5.3 13 9-21 145-157 (233)
242 KOG3088 Secretory carrier memb 22.0 1.5E+02 0.0032 24.1 3.8 38 36-73 238-275 (313)
243 KOG3799 Rab3 effector RIM1 and 21.9 21 0.00045 25.5 -0.8 12 106-117 63-74 (169)
244 PF02318 FYVE_2: FYVE-type zin 21.6 37 0.0008 23.3 0.4 46 107-154 53-102 (118)
245 PF10577 UPF0560: Uncharacteri 21.6 1.9E+02 0.0041 26.9 4.8 10 25-34 254-263 (807)
246 PRK07597 secE preprotein trans 21.5 1.6E+02 0.0036 17.6 3.3 21 34-54 34-54 (64)
247 PF09451 ATG27: Autophagy-rela 21.5 1.6E+02 0.0034 23.4 4.0 13 31-43 198-210 (268)
248 PLN02248 cellulose synthase-li 21.4 75 0.0016 30.6 2.4 31 130-160 150-180 (1135)
249 TIGR01562 FdhE formate dehydro 21.4 21 0.00045 29.1 -1.0 48 107-155 183-233 (305)
250 KOG1245 Chromatin remodeling c 21.3 32 0.0007 33.9 0.1 50 107-157 1107-1160(1404)
251 PF05399 EVI2A: Ectropic viral 21.2 4E+02 0.0086 20.7 7.0 26 31-56 127-152 (227)
252 PF05510 Sarcoglycan_2: Sarcog 21.0 4.2E+02 0.0091 22.5 6.5 25 24-48 270-294 (386)
253 PF06022 Cir_Bir_Yir: Plasmodi 20.9 1.2E+02 0.0026 24.4 3.2 27 29-55 251-277 (280)
254 PF14584 DUF4446: Protein of u 20.9 2.2E+02 0.0047 20.6 4.3 15 105-119 94-108 (151)
255 PRK00418 DNA gyrase inhibitor; 20.9 67 0.0014 19.7 1.4 11 147-157 7-17 (62)
256 PF14979 TMEM52: Transmembrane 20.9 2.2E+02 0.0047 20.7 4.2 28 31-60 15-42 (154)
257 PRK12585 putative monovalent c 20.3 2.1E+02 0.0046 21.8 4.2 16 41-56 10-25 (197)
258 PF05605 zf-Di19: Drought indu 20.2 32 0.0007 20.0 -0.1 8 149-156 34-41 (54)
259 KOG4737 ATPase membrane sector 20.1 1.3E+02 0.0027 24.4 3.1 23 26-48 276-298 (326)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=143.65 Aligned_cols=77 Identities=30% Similarity=0.706 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHhccCccccccCCCCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCC-CcccccCCc
Q 030757 79 CHSDGLSPKELKSLSQFKISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAA-CPTCRTPTT 157 (172)
Q Consensus 79 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~-CP~CR~~~~ 157 (172)
.+..++.++.+++++...|.+..+.... +.|+||+|+|+.++++++| ||+|.||..||+.|+.+.++ ||+||.++.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiL-PC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRIL-PCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEe-cCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4557788999999999999887665433 7999999999999999998 99999999999999998865 999999766
Q ss_pred c
Q 030757 158 F 158 (172)
Q Consensus 158 ~ 158 (172)
.
T Consensus 279 ~ 279 (348)
T KOG4628|consen 279 T 279 (348)
T ss_pred C
Confidence 4
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=5.2e-16 Score=90.04 Aligned_cols=44 Identities=52% Similarity=1.251 Sum_probs=39.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCR 153 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR 153 (172)
++|+||++++..++.+..+ +|+|.||.+|+.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4699999999988888877 7999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.52 E-value=9.1e-15 Score=112.95 Aligned_cols=84 Identities=26% Similarity=0.595 Sum_probs=61.9
Q ss_pred CCCHHHHhccCccccccCCCCCCCCcccccccccccccCc----eeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 83 GLSPKELKSLSQFKISKRNESQPGFESECVVCLEGFKQGQ----WCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 83 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
+..++-++.+|.....-........+.+|+||++++..+. .+.++++|+|.||.+||.+|+..+.+||+||..+.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~- 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI- 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee-
Confidence 3456666677766544333333345689999999877643 23466789999999999999999999999999887
Q ss_pred Cccccccccc
Q 030757 159 DRFLRNSFYS 168 (172)
Q Consensus 159 ~~~~~~~~~~ 168 (172)
.+..+++|.
T Consensus 228 -~v~~~r~~~ 236 (238)
T PHA02929 228 -SVIKSRFFT 236 (238)
T ss_pred -EEeeeeeee
Confidence 666666653
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.1e-13 Score=106.45 Aligned_cols=57 Identities=33% Similarity=0.907 Sum_probs=44.7
Q ss_pred CCcccccccccc-cccCc--------eeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 106 GFESECVVCLEG-FKQGQ--------WCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 106 ~~~~~C~ICl~~-~~~~~--------~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
+++..|.||+++ +..+. .-+..+||||++|-+|++.|++++++||+||.++.+++-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence 467789999999 44431 2223349999999999999999999999999997655443
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9e-13 Score=102.80 Aligned_cols=57 Identities=30% Similarity=0.679 Sum_probs=48.9
Q ss_pred CCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 103 SQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 103 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
...+....|.+||+..+++ ..+||||+||+.||..|...+..||+||....+.++..
T Consensus 234 ~i~~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred cCCCCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcceee
Confidence 3345667899999998774 56799999999999999999999999999999887764
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=1e-12 Score=84.29 Aligned_cols=46 Identities=33% Similarity=0.888 Sum_probs=35.8
Q ss_pred cccccccccccccC---------ceeeeecCCCCcccHHHHHHHHhcCCCCcccc
Q 030757 108 ESECVVCLEGFKQG---------QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCR 153 (172)
Q Consensus 108 ~~~C~ICl~~~~~~---------~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR 153 (172)
++.|+||++++... +....+.+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999332 12234458999999999999999999999998
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.6e-12 Score=101.96 Aligned_cols=51 Identities=39% Similarity=0.881 Sum_probs=45.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~ 158 (172)
...+|+|||++|..+++++++ ||.|.||..|++.|+.. +..||+||.++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vl-PC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVL-PCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEe-ccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 457899999999999998888 99999999999999984 4559999998864
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.23 E-value=8.1e-12 Score=93.17 Aligned_cols=56 Identities=23% Similarity=0.688 Sum_probs=45.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc----------------CCCCcccccCCccCcccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK----------------VAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~----------------~~~CP~CR~~~~~~~~~~~~ 165 (172)
+++.+|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+...++...+
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3567899999988764 55689999999999999852 23599999999988877654
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.9e-11 Score=89.31 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=48.2
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
++....|+|||+.+.+.. ++-+.|||+||..||+..++....||+||+.++.+++.+
T Consensus 128 ~~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 345678999999988754 344689999999999999999999999999999877765
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.17 E-value=2.2e-11 Score=72.35 Aligned_cols=46 Identities=35% Similarity=0.913 Sum_probs=38.3
Q ss_pred cccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+..|.||++.... .++.||||. |+..|+.+|......||+||+++.
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998655 455599999 999999999998889999999886
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.8e-11 Score=91.94 Aligned_cols=58 Identities=29% Similarity=0.616 Sum_probs=48.0
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC---CCCcccccCCccCccccccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~~~~~~~~~~ 166 (172)
.....+|.|||+.-++ ++++.|||.||+.||.+|+..+ +.||+||..++.+++...|+
T Consensus 44 ~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3567799999998766 4666899999999999999854 34999999999999886554
No 12
>PHA02926 zinc finger-like protein; Provisional
Probab=99.14 E-value=7.9e-11 Score=89.06 Aligned_cols=61 Identities=30% Similarity=0.677 Sum_probs=46.6
Q ss_pred CCcccccccccccccC-----ceeeeecCCCCcccHHHHHHHHhcC------CCCcccccCCccCccccccccc
Q 030757 106 GFESECVVCLEGFKQG-----QWCRKLVGCGHVFHRKCLDTWLLKV------AACPTCRTPTTFDRFLRNSFYS 168 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~fh~~Ci~~~~~~~------~~CP~CR~~~~~~~~~~~~~~~ 168 (172)
+.+.+|+||+|..... ....++.+|+|.||..||..|...+ .+||+||..+. .+..++||.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSrf~~ 239 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSKFYK 239 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccccee
Confidence 4567899999976332 2234677999999999999998743 34999999877 666777764
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-10 Score=100.99 Aligned_cols=60 Identities=33% Similarity=0.786 Sum_probs=47.4
Q ss_pred CcccccccccccccCce--eeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccccc
Q 030757 107 FESECVVCLEGFKQGQW--CRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNSFY 167 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~--~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 167 (172)
.+..|+||+|++..+.. ..++ +|+|+||..|+..|+++.++||+||..+...........
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~~~~ 351 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQIAAL 351 (543)
T ss_pred cCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhhhccccccccCC
Confidence 57899999999988643 3455 999999999999999999999999996554444433333
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.06 E-value=1.2e-10 Score=65.51 Aligned_cols=39 Identities=33% Similarity=1.002 Sum_probs=32.1
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~C 152 (172)
|+||++.+.+. .+.++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999988772 2456999999999999999998889987
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.04 E-value=2.1e-10 Score=65.74 Aligned_cols=44 Identities=52% Similarity=1.214 Sum_probs=35.5
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCC
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPT 156 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~ 156 (172)
.|+||++.+... ..+.+|+|.||..|++.|+.. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCc---eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998332 344479999999999999987 66799998764
No 16
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.4e-10 Score=85.24 Aligned_cols=60 Identities=32% Similarity=0.722 Sum_probs=47.5
Q ss_pred CCcccccccccccccCc-------eeeeecCCCCcccHHHHHHHHh--cCCCCcccccCCccCccccccc
Q 030757 106 GFESECVVCLEGFKQGQ-------WCRKLVGCGHVFHRKCLDTWLL--KVAACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~fh~~Ci~~~~~--~~~~CP~CR~~~~~~~~~~~~~ 166 (172)
.++..|+||-..+.... ....+ .|+|+||+.||..|-. .+++||.|+..++.+.+-+|.|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpW 290 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPW 290 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCcc
Confidence 46789999987765543 44566 8999999999999954 5667999999999877766644
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.01 E-value=2.7e-10 Score=74.10 Aligned_cols=52 Identities=35% Similarity=0.835 Sum_probs=39.2
Q ss_pred ccccccccccccc--------Cceee-eecCCCCcccHHHHHHHHhcC---CCCcccccCCccC
Q 030757 108 ESECVVCLEGFKQ--------GQWCR-KLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTTFD 159 (172)
Q Consensus 108 ~~~C~ICl~~~~~--------~~~~~-~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~~~ 159 (172)
++.|.||...|.. ++..+ +...|+|.||..||.+|+.+. ..||+||++...+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 6789999888762 22222 334799999999999999853 4599999987654
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=8.8e-10 Score=68.32 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=45.3
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
..|+||.+.+.++ +..+|||+|+..|+..|+..+..||+|+..+..+++..+
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 4699999998874 556999999999999999988889999999987777665
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.93 E-value=7.6e-10 Score=63.94 Aligned_cols=44 Identities=36% Similarity=0.932 Sum_probs=35.3
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
.|.||.+.|..... ..+++|||+|+..|++.+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~-~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERR-PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCC-eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999933333 556699999999999999855567999985
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=1e-09 Score=62.77 Aligned_cols=38 Identities=39% Similarity=0.964 Sum_probs=29.1
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~C 152 (172)
|+||++.+.+ ++.++|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998 4566999999999999998754 249987
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.85 E-value=2.6e-09 Score=60.63 Aligned_cols=39 Identities=46% Similarity=1.110 Sum_probs=32.6
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHh--cCCCCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL--KVAACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~--~~~~CP~C 152 (172)
|+||++.+..+. .+++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988753 3669999999999999998 34459987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=2.2e-09 Score=88.78 Aligned_cols=55 Identities=25% Similarity=0.576 Sum_probs=46.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
+....|+||++.+..+ ++++|+|.||..|+..|+.....||+||..+....+..+
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N 78 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSN 78 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccc
Confidence 3567899999998774 456999999999999999988889999999887666554
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=8.1e-09 Score=56.99 Aligned_cols=38 Identities=42% Similarity=1.125 Sum_probs=30.3
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHh-cCCCCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-KVAACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~C 152 (172)
|+||++.... .+.++|+|.||..|++.|+. ....||.|
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988433 34458999999999999998 55569987
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.72 E-value=9.3e-09 Score=58.88 Aligned_cols=35 Identities=34% Similarity=0.733 Sum_probs=23.1
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcC
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV 146 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~ 146 (172)
|+||.+ +..++..+++++|||+|+.+|+++++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 87777777777999999999999998854
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.3e-08 Score=83.36 Aligned_cols=52 Identities=33% Similarity=0.794 Sum_probs=39.9
Q ss_pred CcccccccccccccCc-------------eeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQ-------------WCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~-------------~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~ 158 (172)
...+|+|||.++.--. .-.+++||.|+||..|+.+|....+ .||.||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4568999998764211 0135679999999999999999544 79999998863
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.62 E-value=9.8e-09 Score=82.01 Aligned_cols=55 Identities=27% Similarity=0.551 Sum_probs=48.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
.-..|-||.+.|.. ++++||+|.||..||..++..+..||.|+.++....+..++
T Consensus 22 ~lLRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~ 76 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNR 76 (442)
T ss_pred HHHHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhh
Confidence 44689999999988 47779999999999999999999999999999988777654
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.61 E-value=2.8e-08 Score=63.26 Aligned_cols=51 Identities=27% Similarity=0.652 Sum_probs=37.7
Q ss_pred ccccccccccc-----------cCceeee-ecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFK-----------QGQWCRK-LVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~-----------~~~~~~~-l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
+.|+||...+- .++++.+ -.-|+|.||..||.+|+..+..||++|+.....
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 56777765442 3443332 236999999999999999999999999886643
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3e-08 Score=76.87 Aligned_cols=52 Identities=31% Similarity=0.644 Sum_probs=43.3
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHH-HHhcCCC-CcccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT-WLLKVAA-CPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~-~~~~~~~-CP~CR~~~~~~~~ 161 (172)
..+..|+||++..... ..++|||+||..||.. |-.++.. ||+||+.+..+.+
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4578899999987763 5569999999999999 8776665 9999999887665
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4e-08 Score=82.35 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=42.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcC-----CCCcccccCCccCcccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-----AACPTCRTPTTFDRFLR 163 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-----~~CP~CR~~~~~~~~~~ 163 (172)
+..|+||+++... ..++.|||+||..||-+++... ..||+||..+..+++..
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 6789999997665 3455799999999999998754 45999999999877765
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.47 E-value=1.5e-07 Score=60.27 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=41.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~~~~ 164 (172)
+...|+|+.+-+.+ ++.+++||.|...+|..|+.. ...||.|+..+..+++..|
T Consensus 3 ~~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRD----PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 35689999999988 456699999999999999998 7789999999998888765
No 31
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3e-08 Score=62.59 Aligned_cols=51 Identities=33% Similarity=0.773 Sum_probs=37.3
Q ss_pred ccccccccccccc--------Cceee-eecCCCCcccHHHHHHHHhcC---CCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQ--------GQWCR-KLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~--------~~~~~-~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~~ 158 (172)
+++|-||.-+|.. ++.++ ++..|.|.||..||.+|+... ..||+||.....
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4478888877753 33333 233699999999999999754 349999998654
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-07 Score=63.55 Aligned_cols=53 Identities=23% Similarity=0.557 Sum_probs=38.8
Q ss_pred Ccccccccccccc-------------cCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFK-------------QGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~-------------~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..+.|+||...+- .++-...-.-|+|.||..||.+|++++..||+|.++..+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 4677999974321 1222233347999999999999999999999998876543
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=2.2e-07 Score=74.27 Aligned_cols=56 Identities=23% Similarity=0.598 Sum_probs=40.7
Q ss_pred cccccccccc-cccCc-eeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCccccc
Q 030757 108 ESECVVCLEG-FKQGQ-WCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 108 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~~~~ 164 (172)
+..|++|..+ |.+++ .+-+. +|||.||..|++..+.. ...||.|+..+....+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 4579999985 33333 22223 79999999999996644 4569999999987776543
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.41 E-value=1.2e-07 Score=74.55 Aligned_cols=54 Identities=24% Similarity=0.452 Sum_probs=46.3
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
....|-||-+.+.. +.+++|||.||..||...+..+..||+||.+..+..+..+
T Consensus 24 s~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 24 SMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGS 77 (391)
T ss_pred hHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccc
Confidence 45689999999887 5778999999999999999999999999998776555443
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.8e-07 Score=75.37 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=40.5
Q ss_pred CCcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+...+|.||+.+-.+ ..++||.|. .|..|.+...-+.++||+||.++.
T Consensus 288 ~~gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 346789999998766 344599997 999999998878888999999886
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.30 E-value=5.9e-07 Score=52.94 Aligned_cols=42 Identities=24% Similarity=0.722 Sum_probs=30.5
Q ss_pred cccccccccccCceeeeecCCC-----CcccHHHHHHHHhcC--CCCcccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCG-----HVFHRKCLDTWLLKV--AACPTCR 153 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 153 (172)
.|.||++....++ ..+. ||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~-~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGD-PLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCC-eeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998333333 3344 885 789999999999755 3699995
No 37
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2e-07 Score=55.07 Aligned_cols=46 Identities=30% Similarity=0.645 Sum_probs=36.6
Q ss_pred cccccccccccccCceeeeecCCCCc-ccHHHHHHHHh-cCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
+++|.||+|.-.+ .++..|||. .|.+|..+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvd----sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD----SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch----HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4789999997555 255589997 89999776665 6677999999886
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.21 E-value=1.9e-07 Score=59.20 Aligned_cols=51 Identities=31% Similarity=0.764 Sum_probs=24.4
Q ss_pred cccccccccccccCceeeee----cCCCCcccHHHHHHHHhc---C--------CCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKL----VGCGHVFHRKCLDTWLLK---V--------AACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l----~~C~H~fh~~Ci~~~~~~---~--------~~CP~CR~~~~~ 158 (172)
+.+|.||.+....++.+... ..|+..||..|+.+|+.. . ..||.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 35799999886633332222 368899999999999862 1 139999998864
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.21 E-value=4.5e-07 Score=80.86 Aligned_cols=54 Identities=28% Similarity=0.722 Sum_probs=39.3
Q ss_pred CCCccccccccccccc-Ccee--eeecCCCCcccHHHHHHHHhcC--CCCcccccCCcc
Q 030757 105 PGFESECVVCLEGFKQ-GQWC--RKLVGCGHVFHRKCLDTWLLKV--AACPTCRTPTTF 158 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~-~~~~--~~l~~C~H~fh~~Ci~~~~~~~--~~CP~CR~~~~~ 158 (172)
-++.++|+||...+.. +... .+...|.|.||..|+..|+..+ ++||+||.++++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3478899999876651 1111 1223689999999999999865 459999988764
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.10 E-value=5.1e-07 Score=55.47 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=25.5
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
..|++|.+-+.++. .+..|.|+||+.|+..-+. ..||+|+.+.-..++.-|+
T Consensus 8 LrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 8 LRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp TS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----H
T ss_pred cCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhh
Confidence 57999999988852 4568999999999987554 3499999998777777664
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.06 E-value=1.4e-06 Score=72.14 Aligned_cols=50 Identities=32% Similarity=0.634 Sum_probs=38.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
+-.+|+||||.+.....-.....|.|.||-.|+..|.. .+||+||.-..+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~p 223 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQSP 223 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcCc
Confidence 56789999998876542222337999999999999964 679999987763
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.2e-06 Score=69.89 Aligned_cols=49 Identities=31% Similarity=0.843 Sum_probs=35.4
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcC---CCCcccccCCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTT 157 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~ 157 (172)
-.|.||.+-+.....+...-.|||+||..|+.+|+... ..||+||-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 46999955444444444444699999999999999843 46999994443
No 43
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.4e-06 Score=67.48 Aligned_cols=45 Identities=40% Similarity=0.811 Sum_probs=37.8
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
.+...|+||++.|..+ .+++|+|.||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3567899999999996 45599999999999999884456999993
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.7e-06 Score=67.96 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=39.8
Q ss_pred CCcccccccccccccCc----eeeeecCCCCcccHHHHHHHHh--c-----CCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQ----WCRKLVGCGHVFHRKCLDTWLL--K-----VAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~~~~--~-----~~~CP~CR~~~~ 157 (172)
..+.+|.||++...... ...++++|.|.||..||..|-. + .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35789999999765532 1235578999999999999983 4 356999998765
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.3e-06 Score=68.58 Aligned_cols=57 Identities=26% Similarity=0.701 Sum_probs=43.2
Q ss_pred CcccccccccccccC-ceeeeecCCCCcccHHHHHHHHhcC--CCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQG-QWCRKLVGCGHVFHRKCLDTWLLKV--AACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~CR~~~~~~~~~~ 163 (172)
....|+||++.+... +...+.+.|||.|.++||+.|+.+. ..||.|..+-...++..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~ 62 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP 62 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHH
Confidence 456899999988754 4444456899999999999999632 34999988766665543
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.7e-06 Score=73.68 Aligned_cols=53 Identities=28% Similarity=0.624 Sum_probs=44.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh-cCCCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-KVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~CR~~~~~~~~~~ 163 (172)
.-..|+.|-....+ .+++.|+|+||..|+..... +...||.|.+.+...++.+
T Consensus 642 ~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhh----HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 45679999977666 45668999999999999887 4566999999999888775
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.3e-05 Score=63.46 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=38.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~~~ 160 (172)
..+|+||+.....+ +.++|+|.||.-||+.-....+ +|++||.++...-
T Consensus 7 ~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 46799999876553 4459999999999998766554 5999999988543
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.64 E-value=1.9e-05 Score=64.81 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=38.4
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhc--CCCCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK--VAACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~--~~~CP~CR~~~~~~~ 160 (172)
-.-|.||-|. +..+.+. ||||..|..|+..|-.. .+.||.||.++....
T Consensus 369 FeLCKICaen---dKdvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHHhhcc---CCCcccc-cccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3469999984 4445666 99999999999999854 356999999987543
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00042 Score=54.40 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=40.8
Q ss_pred CCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--CCCcccccCCc
Q 030757 102 ESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--AACPTCRTPTT 157 (172)
Q Consensus 102 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~CR~~~~ 157 (172)
......+.+|++|-+.-..+- +..+|+|+||..|+..-.... ..||.|..+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344457789999999766653 344899999999999876644 46999988876
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.56 E-value=1.8e-05 Score=69.68 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=40.5
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
...|++|+..+..+...... +|+|.||..|+..|-....+||+||..+..-..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k-~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEK-HTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhcccc-ccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 34577777766655433344 899999999999999999999999998764333
No 51
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.1e-05 Score=65.37 Aligned_cols=46 Identities=35% Similarity=0.647 Sum_probs=31.8
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
....+.|.||+++..+ ...+||||+-| |..-- +.-.+||+||..+.
T Consensus 302 ~~~p~lcVVcl~e~~~----~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS----AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc----eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3466789999998776 35669999844 43322 22344999998876
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=8e-05 Score=62.01 Aligned_cols=49 Identities=35% Similarity=0.649 Sum_probs=41.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
..+..|.||+..+..+ +.+||||.||..|+++-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4678999999988874 555999999999999987777779999998773
No 53
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=2.1e-05 Score=63.56 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=40.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC-CCCcccccCCccCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-AACPTCRTPTTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~CR~~~~~~~~ 161 (172)
.+..|+||++-++..- ....|.|-||.+||..-+... +.||.||+.+....-
T Consensus 42 ~~v~c~icl~llk~tm---ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTM---TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhccHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 5678999999887742 333799999999998877755 459999998875443
No 54
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00023 Score=55.08 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=51.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
....|++|.+.+.+...+..+.+|||+++.+|.+.++.....||+|..++.+.++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 356799999999999888899999999999999999999999999999999888764
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.26 E-value=9.6e-05 Score=60.61 Aligned_cols=48 Identities=31% Similarity=0.643 Sum_probs=37.9
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--CCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--AACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~CR~ 154 (172)
.+..|-.|-+.+...++--.-+||.|+||..|+...+.++ .+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4677999998877654433445999999999999999765 46999994
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.25 E-value=9.1e-05 Score=58.76 Aligned_cols=52 Identities=33% Similarity=0.757 Sum_probs=41.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-----------------------CCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-----------------------VAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-----------------------~~~CP~CR~~~~~~ 159 (172)
....|.|||.-|..++...+. +|-|.||..|+.+++.. ...||+||..+..+
T Consensus 114 p~gqCvICLygfa~~~~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 345799999999998877766 99999999999988631 12499999987754
No 57
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00076 Score=54.22 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=48.4
Q ss_pred cccccCCCCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 95 FKISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
..+.++.+....+...|++|+...+++. ++.--|-+||..|+-.++...+.||+=..+....++.+
T Consensus 287 ~~~~se~e~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r 352 (357)
T KOG0826|consen 287 KQYNSESELLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR 352 (357)
T ss_pred hhcccccccCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHH
Confidence 3444455555557789999999888764 33245889999999999999999998766666555443
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.16 E-value=0.00019 Score=67.20 Aligned_cols=57 Identities=21% Similarity=0.523 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----------CCCcccccCCccCccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----------AACPTCRTPTTFDRFL 162 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----------~~CP~CR~~~~~~~~~ 162 (172)
.+.++.|.||..+-........+ .|+|+||..|..+.+++. -+||+|+.++....++
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL-~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQL-DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred cccCceEEEEehhhhCCCcceec-CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHH
Confidence 34688999999876655555556 999999999998776643 2599999988765443
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.16 E-value=0.00039 Score=42.16 Aligned_cols=42 Identities=24% Similarity=0.639 Sum_probs=27.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC--CCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPT 151 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~ 151 (172)
....|+|.+..++++. +-..|+|+|-.+.|.+|+..++ .||.
T Consensus 10 ~~~~CPiT~~~~~~PV---~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPV---KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEE---EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCc---CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4568999999988853 2238999999999999995433 4998
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.06 E-value=0.00031 Score=52.67 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=40.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
-...|.||-++|.. ++.+.|||.||..|...-......|-+|.+..-.
T Consensus 195 IPF~C~iCKkdy~s----pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 195 IPFLCGICKKDYES----PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred Cceeehhchhhccc----hhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 34689999999998 4666899999999998888888889999876543
No 61
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.00 E-value=0.00034 Score=58.52 Aligned_cols=53 Identities=28% Similarity=0.528 Sum_probs=44.6
Q ss_pred CCcccccccccccccCceeeee-cCCCCcccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKL-VGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
+.+..|++|...+.++. . +.|||.||..|+..|+..+..||.|+..+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~----~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPV----QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCC----CCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 45678999999988853 3 38999999999999999988899999988766554
No 62
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.80 E-value=0.00069 Score=47.92 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=29.1
Q ss_pred cccccccccccccCceeeeecCCC------CcccHHHHHHHHhcC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCG------HVFHRKCLDTWLLKV 146 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~------H~fh~~Ci~~~~~~~ 146 (172)
..+|+||++.+..++.+..+ +|+ |.||.+|+++|-...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~v-t~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYV-TDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEE-ecCCeehHHHHHHHHHHHHHHhhc
Confidence 46799999999884445555 564 889999999995433
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.80 E-value=0.00038 Score=55.97 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=44.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
.....|.+|-..+.+.. ....|-|.||..||-..+.....||.|...+....-..
T Consensus 13 n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLL 67 (331)
T ss_pred ccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccc
Confidence 35578999999888764 33489999999999999999889999998877654333
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.77 E-value=0.0022 Score=50.81 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=46.9
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
......|+|...++........+.+|||+|.+.++++.- ....||+|-.++...++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 346778999999997666666777999999999999973 3456999999988776653
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0017 Score=52.83 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=42.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
.++..|+||...-.+ .+..||+|.-|+.||.+-+.+.+.|=.|+..+....+
T Consensus 420 sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~l 471 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVIL 471 (489)
T ss_pred cccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceeeehhc
Confidence 467889999875444 3566999999999999999999999999998875433
No 66
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0018 Score=49.56 Aligned_cols=50 Identities=30% Similarity=0.612 Sum_probs=40.5
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhc--------CCCCcccccCCccC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK--------VAACPTCRTPTTFD 159 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~--------~~~CP~CR~~~~~~ 159 (172)
...|..|-..+..++.++ + -|-|+||.+|+++|..+ ...||-|..++.+.
T Consensus 50 ~pNC~LC~t~La~gdt~R-L-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-L-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCccee-e-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 456999999999998766 4 59999999999999753 23599999887654
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0013 Score=54.45 Aligned_cols=37 Identities=30% Similarity=0.763 Sum_probs=29.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL 144 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~ 144 (172)
.-..|.||+++..... ....+||+|+||..|...+..
T Consensus 183 slf~C~ICf~e~~G~~-c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQH-CFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcc-eeeecccchHHHHHHHHHHHH
Confidence 4567999999865434 444559999999999999975
No 68
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00035 Score=55.29 Aligned_cols=42 Identities=26% Similarity=0.721 Sum_probs=32.6
Q ss_pred cccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+.-|+||++.-.+ -++++|||. -|.+|..+. +.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD----CVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc----eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6689999997555 355699996 799997654 47999998764
No 69
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.54 E-value=0.0029 Score=46.00 Aligned_cols=49 Identities=20% Similarity=0.675 Sum_probs=35.1
Q ss_pred CCcccccccccccccCceeeeecCCCC-----cccHHHHHHHHhcCC--CCcccccCCccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGH-----VFHRKCLDTWLLKVA--ACPTCRTPTTFD 159 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H-----~fh~~Ci~~~~~~~~--~CP~CR~~~~~~ 159 (172)
..+..|-||.++-.. . .. ||.. ..|.+|+++|+..++ .|++|+.+....
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~-PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TN-YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cC-CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 356789999987432 1 23 6753 359999999998553 499999876644
No 70
>PHA02862 5L protein; Provisional
Probab=96.50 E-value=0.0019 Score=46.13 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=33.5
Q ss_pred cccccccccccccCceeeeecCCC-----CcccHHHHHHHHhcC--CCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCG-----HVFHRKCLDTWLLKV--AACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~~~~~~--~~CP~CR~~~~~ 158 (172)
.+.|-||.++-.++ . -||. ..-|.+|+.+|+..+ ..|++|+.+...
T Consensus 2 ~diCWIC~~~~~e~----~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----N-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----c-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35799999975332 2 2774 347999999999754 349999998653
No 71
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.00064 Score=60.68 Aligned_cols=44 Identities=30% Similarity=0.629 Sum_probs=33.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPT 156 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~ 156 (172)
....|..|-..+..+. +.-.|||.||..|.+ .....||.|+.+.
T Consensus 839 q~skCs~C~~~LdlP~---VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPF---VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccce---eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 4468999998877763 444799999999998 3445699998843
No 72
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.00094 Score=51.61 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=37.1
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNSFYS 168 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 168 (172)
.|.-|...-. ++... ++.|+|+||..|...-.. ..||+||..+...++..++..+
T Consensus 5 hCn~C~~~~~-~~~f~-LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~slp~~ 59 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFF-LTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNRSLPTD 59 (233)
T ss_pred EeccccccCC-CCcee-eeechhhhhhhhcccCCc--cccccccceeeeeecccccchh
Confidence 3555654322 34334 459999999999865332 2799999998877777665443
No 73
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.45 E-value=0.0013 Score=38.28 Aligned_cols=40 Identities=33% Similarity=0.915 Sum_probs=25.7
Q ss_pred ccccccccccCceeeeecCCC-----CcccHHHHHHHHhc--CCCCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCG-----HVFHRKCLDTWLLK--VAACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~~~~~--~~~CP~C 152 (172)
|-||+++-..+. ....||+ -..|.+|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998766655 2233774 25799999999974 3458887
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.45 E-value=0.0026 Score=37.00 Aligned_cols=45 Identities=29% Similarity=0.605 Sum_probs=21.5
Q ss_pred ccccccccccCc-eeeeecCCCCcccHHHHHHHHh-cCCCCcccccCC
Q 030757 111 CVVCLEGFKQGQ-WCRKLVGCGHVFHRKCLDTWLL-KVAACPTCRTPT 156 (172)
Q Consensus 111 C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~CR~~~ 156 (172)
|++|.+++...+ ...-- +|++.++..|....++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788999884433 22212 4688899999988876 467799999864
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.38 E-value=0.0019 Score=55.16 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=37.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-----CCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-----VAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-----~~~CP~CR~~~~~ 158 (172)
+..+|-+|-++-++ .+...|.|.||..|+.+++.. +-+||.|...++-
T Consensus 535 ~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 56689999987655 355589999999999998752 2459999887653
No 76
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.34 E-value=0.0014 Score=44.48 Aligned_cols=32 Identities=28% Similarity=0.642 Sum_probs=25.3
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLD 140 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 140 (172)
....|++|-..+..+ ...+. ||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~-~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-VFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-eEEEe-CCCeEEeccccc
Confidence 456799999998773 34445 999999999975
No 77
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0013 Score=47.77 Aligned_cols=29 Identities=34% Similarity=0.816 Sum_probs=26.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHR 136 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~ 136 (172)
+.-+|.||||++..++.+.++ ||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARL-PCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARL-PCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceecc-ceEEEeec
Confidence 456899999999999999988 99999986
No 78
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0029 Score=50.78 Aligned_cols=48 Identities=29% Similarity=0.738 Sum_probs=39.6
Q ss_pred ccccccccccccC--ceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCC
Q 030757 109 SECVVCLEGFKQG--QWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPT 156 (172)
Q Consensus 109 ~~C~ICl~~~~~~--~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~ 156 (172)
..|-||-++|... +.+++.+.|||.++..|+...+.... .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5799999999876 56667779999999999988776554 499999985
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.12 E-value=0.0027 Score=56.85 Aligned_cols=51 Identities=29% Similarity=0.722 Sum_probs=39.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-------CCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-------ACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-------~CP~CR~~~~ 157 (172)
...+|.||.+.+.....+..-..|-|+||..||..|..+.. .||.|+....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 35689999999988876665556789999999999986421 3999985444
No 80
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0027 Score=50.42 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=39.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
-...|-||...|..+ +.+.|+|.||..|...-+.....|.+|.....
T Consensus 240 ~Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccc----hhhcCCceeehhhhccccccCCcceecccccc
Confidence 355699999999984 56699999999999887777788999987654
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.94 E-value=0.0034 Score=49.84 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=39.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
...|+||.+.+.........++|||..|..|.+.....+..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34599999988877666666799999999999998887788999988
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.88 E-value=0.007 Score=34.48 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=23.3
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcCC--CCccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTC 152 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~C 152 (172)
|.+|.+-...+...... .|+-.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777777666544433 6888899999999998665 59987
No 83
>PHA03096 p28-like protein; Provisional
Probab=95.78 E-value=0.005 Score=49.28 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=33.3
Q ss_pred ccccccccccccC----ceeeeecCCCCcccHHHHHHHHhcC---CCCcccccC
Q 030757 109 SECVVCLEGFKQG----QWCRKLVGCGHVFHRKCLDTWLLKV---AACPTCRTP 155 (172)
Q Consensus 109 ~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~ 155 (172)
..|.||++..... ..-.++..|.|.||..|+..|.... ..||.||.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 6799999876542 2234667899999999999997643 235555543
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.74 E-value=0.0051 Score=36.70 Aligned_cols=46 Identities=30% Similarity=0.692 Sum_probs=31.3
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|..|...-.. ...+||+|+.+..|.+. .+-+.||.|.+++...+
T Consensus 8 ~~~~~~~~~~~~----~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTK----GTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccc----cccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 345555543222 34559999999999764 34456999999987654
No 85
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.74 E-value=0.012 Score=47.97 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=36.7
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHH--hcCCCCcccccCCcc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL--LKVAACPTCRTPTTF 158 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~--~~~~~CP~CR~~~~~ 158 (172)
.++...|.||-+.+.- ..++||+|..|--|.-+.- -..+.||+||.+...
T Consensus 58 DEen~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 58 DEENMNCQICAGSTTY----SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccceeEEecCCceE----EEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3456679999986543 3455999999999976653 356779999987653
No 86
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.001 Score=54.59 Aligned_cols=57 Identities=26% Similarity=0.594 Sum_probs=47.0
Q ss_pred CcccccccccccccC-ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQG-QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
....|+||.+.+... +.+..+ -|||.+|.+|+..|+.....||.||+.+....+...
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~e~k 252 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKNGFEEK 252 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhhhHHHH
Confidence 456799999998876 444445 799999999999999998889999999987666544
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.87 E-value=0.019 Score=46.68 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=38.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~ 161 (172)
+++.|+.|+|++...++--.--+||-..|..|....-.. +..||-||+...++.+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 345599999998877654333368887788886554332 3559999998876554
No 88
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.78 E-value=0.027 Score=40.93 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=35.2
Q ss_pred cccccccccccccCcee---------eeecCCCCc-ccHHHHHHHHhc-------------------------------C
Q 030757 108 ESECVVCLEGFKQGQWC---------RKLVGCGHV-FHRKCLDTWLLK-------------------------------V 146 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~---------~~l~~C~H~-fh~~Ci~~~~~~-------------------------------~ 146 (172)
+..|+||||.-.+...+ +-. -|+.. -|..|++++-+. +
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpy-mc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPY-MCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCcccc-ccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 46799999976663211 111 25444 489999998531 1
Q ss_pred CCCcccccCCccCccc
Q 030757 147 AACPTCRTPTTFDRFL 162 (172)
Q Consensus 147 ~~CP~CR~~~~~~~~~ 162 (172)
-.||+||..+....+.
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 1399999999866654
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.61 E-value=0.021 Score=46.14 Aligned_cols=43 Identities=30% Similarity=0.690 Sum_probs=34.7
Q ss_pred CcccccccccccccCceeeeecCC--CCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGC--GHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C--~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+-.+|+||.+.+..+ +. .| ||..|..|-.+ ....||.||-++.
T Consensus 47 ~lleCPvC~~~l~~P----i~-QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IF-QCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc----ce-ecCCCcEehhhhhhh---hcccCCccccccc
Confidence 556899999999884 56 78 79999999753 3456999999987
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.016 Score=46.56 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=30.2
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
-.|.-|--.+.. ..++.||+|+||.+|... ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAI---YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCccee---eecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 356666544333 335669999999999754 55678999976543
No 91
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.032 Score=44.38 Aligned_cols=55 Identities=22% Similarity=0.458 Sum_probs=40.7
Q ss_pred ccccccc-ccccCceeeeecCCCCcccHHHHHHHHhcC-CCCcccccCCccCccccc
Q 030757 110 ECVVCLE-GFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-AACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 110 ~C~ICl~-~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~CR~~~~~~~~~~~ 164 (172)
.|++|-. .|.+++.....-+|+|..|++|.+..+..+ ..||-|...+....+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q 58 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQ 58 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchh
Confidence 4888865 455555544445999999999999987644 569999888776665543
No 92
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.42 E-value=0.014 Score=45.26 Aligned_cols=62 Identities=19% Similarity=0.427 Sum_probs=42.4
Q ss_pred Ccccccccccc-cccCce-eeeecCCCCcccHHHHHHHHhcCC-CCc--ccccCCccCccccccccc
Q 030757 107 FESECVVCLEG-FKQGQW-CRKLVGCGHVFHRKCLDTWLLKVA-ACP--TCRTPTTFDRFLRNSFYS 168 (172)
Q Consensus 107 ~~~~C~ICl~~-~~~~~~-~~~l~~C~H~fh~~Ci~~~~~~~~-~CP--~CR~~~~~~~~~~~~~~~ 168 (172)
.+..|++|..+ |.+++. +.+-+.|-|..|++|+++.+.... .|| -|.+-+....+....|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~qtFeD 75 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIKQTFED 75 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcccccccch
Confidence 45689999864 444443 333434999999999999987654 599 787766655555544433
No 93
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.042 Score=40.75 Aligned_cols=31 Identities=39% Similarity=1.057 Sum_probs=25.0
Q ss_pred cCCCCcccHHHHHHHHhc----C-------CCCcccccCCcc
Q 030757 128 VGCGHVFHRKCLDTWLLK----V-------AACPTCRTPTTF 158 (172)
Q Consensus 128 ~~C~H~fh~~Ci~~~~~~----~-------~~CP~CR~~~~~ 158 (172)
..||.-||.-|+..|+.. . ..||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 379999999999999862 1 249999888764
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.89 E-value=0.017 Score=51.62 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=37.8
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC--CCcccccCCccCcccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRTPTTFDRFLR 163 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~~~~~~~~~~ 163 (172)
..|.||++ ... ...+.|+|.||.+|+...+.... .||+||..+....+..
T Consensus 455 ~~c~ic~~-~~~----~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDS----FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-ccc----ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 68999999 222 34458999999999998876443 4999999887655544
No 95
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.19 E-value=0.077 Score=47.80 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=40.1
Q ss_pred CCCcccccccccccccCceeeeecCCCC-----cccHHHHHHHHhcCC--CCcccccCCccCccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGH-----VFHRKCLDTWLLKVA--ACPTCRTPTTFDRFL 162 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H-----~fh~~Ci~~~~~~~~--~CP~CR~~~~~~~~~ 162 (172)
.+++..|.||..+=..++.+ .-||+. ..|.+|+.+|+.-++ .|-+|+.+..++++-
T Consensus 9 N~d~~~CRICr~e~~~d~pL--fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL--FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred CccchhceeecCCCCCCCcC--cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 34567899999765555422 226642 379999999998544 499999998877654
No 96
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.82 E-value=0.069 Score=42.78 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=35.9
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHh-cCCCCccccc-CCccCccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-KVAACPTCRT-PTTFDRFL 162 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~CR~-~~~~~~~~ 162 (172)
..|+.|..-+.+.- ....|+|.||.+||..-+. ....||.|.+ ++..+.+.
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~ 327 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT 327 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCcccccchhhccC
Confidence 67999987766643 1237899999999997654 5677999966 33333433
No 97
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.051 Score=41.62 Aligned_cols=39 Identities=33% Similarity=0.721 Sum_probs=27.7
Q ss_pred ccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
|-.|-+.- .. ..++||.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~~---~~-VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGERE---AT-VLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCC---ce-EEeecccceEeccccccc----CccCCCCcChhh
Confidence 88887742 22 345599986 89999754 345999987655
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.43 E-value=0.058 Score=31.16 Aligned_cols=42 Identities=31% Similarity=0.712 Sum_probs=24.8
Q ss_pred cccccccccccCceeeeecCCC-CcccHHHHHHHHhcCCCCcccccCCc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCG-HVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
.|.-|+-+... +..|. |..|..|+...+..+..||+|..++.
T Consensus 4 nCKsCWf~~k~------Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKG------LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SS------EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhcCCC------eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 45566644222 33685 88999999999998888999988876
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.21 E-value=0.093 Score=46.97 Aligned_cols=40 Identities=28% Similarity=0.732 Sum_probs=27.6
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPT 151 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~ 151 (172)
.|+||--...... .+...|+|+.|.+|...|+..+..||.
T Consensus 1030 ~C~~C~l~V~gss--~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSS--NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccc--hhhccccccccHHHHHHHHhcCCcCCC
Confidence 3666544333221 122369999999999999998888874
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=0.073 Score=41.71 Aligned_cols=51 Identities=24% Similarity=0.624 Sum_probs=34.4
Q ss_pred CCcccccccccccccCcee-eeecCC-----CCcccHHHHHHHHhcCC--------CCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWC-RKLVGC-----GHVFHRKCLDTWLLKVA--------ACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~-~~l~~C-----~H~fh~~Ci~~~~~~~~--------~CP~CR~~~~ 157 (172)
+.+..|-||+..=+++-.- .+. || .|..|..|+.+|+..+. +||.|+++..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~-PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVH-PCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcc-cccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4567899999754333211 233 66 37799999999985331 3999998754
No 101
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.04 E-value=0.15 Score=30.35 Aligned_cols=34 Identities=32% Similarity=0.693 Sum_probs=28.6
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
...|.+|-+.|..++.+.+-+.|+-.+|.+|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3579999999987777777779999999999754
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=0.076 Score=48.15 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=27.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL 143 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~ 143 (172)
.++.|.+|...+.... -.+. +|||.||.+|+.+-.
T Consensus 816 p~d~C~~C~~~ll~~p-F~vf-~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKP-FYVF-PCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcCc-ceee-eccchHHHHHHHHHH
Confidence 5678999998877642 2234 899999999998764
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.22 Score=41.34 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=40.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC---CCcccccCCccCcccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA---ACPTCRTPTTFDRFLR 163 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~---~CP~CR~~~~~~~~~~ 163 (172)
.+...|||=.+.-.+. ..++.+.|||+...+.+.+..+... .||.|=.+...++-++
T Consensus 332 HSvF~CPVlKeqtsde-NPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kq 391 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDE-NPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQ 391 (394)
T ss_pred cceeecccchhhccCC-CCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhccc
Confidence 4678899976654433 3455569999999999999887654 4999977665544443
No 104
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.55 E-value=0.43 Score=45.19 Aligned_cols=44 Identities=30% Similarity=0.847 Sum_probs=36.7
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
...|.||++.+.... ....|||.+|..|...|+..+..||+|+.
T Consensus 1153 ~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 348999999888432 22379999999999999999999999974
No 105
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=0.15 Score=40.77 Aligned_cols=34 Identities=29% Similarity=0.660 Sum_probs=24.9
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCcccccCCccCcccc
Q 030757 130 CGHVFHRKCLDTWLLK-------------VAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 130 C~H~fh~~Ci~~~~~~-------------~~~CP~CR~~~~~~~~~~ 163 (172)
|...+|.+|+.+|+.. +.+||+||++..-.++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 4566889999999742 235999999887655543
No 106
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.90 E-value=0.27 Score=34.76 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=36.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC---CCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~~~~ 160 (172)
.-.+|.||.|.-.+..-+.----||-..|..|....++.. ..||.|++....+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 3468999998755432111112489889999977766643 45999999887544
No 107
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=0.48 Score=37.18 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=42.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~ 163 (172)
....|+|---++........+.+|||+|-+..+.+.- .++|++|...+...+..-
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEe
Confidence 4567998877777666556667999999999988743 567999999988776653
No 108
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.35 E-value=0.23 Score=41.06 Aligned_cols=30 Identities=23% Similarity=0.678 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHhcC-------------CCCcccccCCccCc
Q 030757 131 GHVFHRKCLDTWLLKV-------------AACPTCRTPTTFDR 160 (172)
Q Consensus 131 ~H~fh~~Ci~~~~~~~-------------~~CP~CR~~~~~~~ 160 (172)
...+|.+|+.+|+..+ ..||.||+...-.+
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 4567899999998532 24999999876443
No 109
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.85 E-value=0.33 Score=38.94 Aligned_cols=53 Identities=21% Similarity=0.453 Sum_probs=35.6
Q ss_pred CcccccccccccccCceeeeecCCC-----CcccHHHHHHHHhcC--CCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG-----HVFHRKCLDTWLLKV--AACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~~~~~~--~~CP~CR~~~~~~ 159 (172)
++..|-||.++...........||. ...|..|++.|...+ ..|.+|.......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 3478999998765432112344673 346999999999844 4599998765543
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.29 E-value=0.16 Score=45.11 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=39.5
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC---CCcccccCCccCccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA---ACPTCRTPTTFDRFL 162 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~---~CP~CR~~~~~~~~~ 162 (172)
..+|+||.+.+..+ +++.|.|.|+..|+...+...+ .||+|+..+......
T Consensus 21 ~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 21 ILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence 35799999998884 5669999999999887765443 599999877654443
No 111
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.74 E-value=0.87 Score=26.62 Aligned_cols=43 Identities=23% Similarity=0.586 Sum_probs=18.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHh---cCC--CCcccccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVA--ACPTCRTP 155 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~--~CP~CR~~ 155 (172)
..|+|....+..+. + ...|.|.-+-+ ++.|+. +.. .||+|.++
T Consensus 3 L~CPls~~~i~~P~--R-g~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV--R-GKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE--E-ETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc--c-CCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888887776642 3 34899973211 334443 222 49999763
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=0.31 Score=40.86 Aligned_cols=38 Identities=24% Similarity=0.613 Sum_probs=27.6
Q ss_pred Ccccccccc-cccccCceeeeecCCCCcccHHHHHHHHhc
Q 030757 107 FESECVVCL-EGFKQGQWCRKLVGCGHVFHRKCLDTWLLK 145 (172)
Q Consensus 107 ~~~~C~ICl-~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~ 145 (172)
...+|.||. +.....+... ...|+|.||.+|..+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 457899999 4433333333 3479999999999998863
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.57 E-value=0.44 Score=42.08 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=34.0
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTP 155 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~ 155 (172)
..|.||+..|......++.+.|||..|..|++... +.+|| |+.+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 46999988887776666777999999999998654 35688 5443
No 114
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.61 E-value=0.8 Score=38.76 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=28.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK 145 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~ 145 (172)
+++..|+||..-|+++ +.++|+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~ep----iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP----IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc----eEeecccHHHHHHHHhhccc
Confidence 3457899999999884 55599999999998876543
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.92 E-value=1.4 Score=39.66 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=33.0
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcc--cccCCcc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPT--CRTPTTF 158 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~--CR~~~~~ 158 (172)
..|.+|-..+..-. +.-. -|+|.-|.+|+.+|+.....||. |-..-..
T Consensus 780 ~~CtVC~~vi~G~~-~~c~-~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVD-VWCQ-VCGHGGHDSHLKSWFFKASPCAKSICPHLCHY 829 (839)
T ss_pred cCceeecceeeeeE-eecc-cccccccHHHHHHHHhcCCCCccccCCccccc
Confidence 35778876554322 1222 69999999999999998888876 6444333
No 116
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=78.97 E-value=0.52 Score=37.25 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=38.3
Q ss_pred ccccccccccccCceeeee---cCCCCcccHHHHHHHHh---------cCCCCcccccCCccCcccc
Q 030757 109 SECVVCLEGFKQGQWCRKL---VGCGHVFHRKCLDTWLL---------KVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l---~~C~H~fh~~Ci~~~~~---------~~~~CP~CR~~~~~~~~~~ 163 (172)
.+|.+|.+++.+.+..+.. ..|.-.+|..|+...+. ....||.|++-+...++..
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w~~lv~ 249 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSWTTLVD 249 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeHHHHHH
Confidence 5899999999554433322 35777899999988432 2246999999776665554
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=78.10 E-value=1.5 Score=33.35 Aligned_cols=41 Identities=27% Similarity=0.711 Sum_probs=27.2
Q ss_pred cccccccccc-----cccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 108 ESECVVCLEG-----FKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 108 ~~~C~ICl~~-----~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
...|.+|-++ |+.+ .+..-..|+-+||..|... ..||.|-+
T Consensus 152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 4678888642 3332 2333457999999999762 66999943
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=77.19 E-value=2.2 Score=34.77 Aligned_cols=56 Identities=20% Similarity=0.431 Sum_probs=36.5
Q ss_pred cccCCCCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCccccc
Q 030757 97 ISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRT 154 (172)
Q Consensus 97 ~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~ 154 (172)
+.............|-.|.++......++-- .|.+.||.+|- .++.. -..||-|..
T Consensus 319 F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCD-v~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 319 FVEIPETEYNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDCD-VFIHESLHNCPGCEH 375 (378)
T ss_pred hhhccccccCCCcceeeeccccCCCCcEEch-hccceeeccch-HHHHhhhhcCCCcCC
Confidence 3333333333456699997777766655544 79999999994 44443 345999963
No 120
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=75.60 E-value=5 Score=26.54 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 030757 3 PPQRYQHYDDVDVHRRHDSPPLPPKPNPKILPILLKVIIMTLITSMFFLLLGLV 56 (172)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ii~~~~~~i~~~~~~l~ 56 (172)
++..||+|-+....++.- ..-.|+..+-.+.|..+++..+++.+.+.
T Consensus 19 ~~~~yQe~q~~~~~~~kL-------~ELlFF~nIA~FcI~tvlfsFvfLs~kl~ 65 (90)
T PF11674_consen 19 QTPKYQEYQPENQSSAKL-------KELLFFANIAFFCIFTVLFSFVFLSLKLN 65 (90)
T ss_pred cccchhhccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666555444433 23355555555556555555555555433
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.50 E-value=0.83 Score=40.14 Aligned_cols=43 Identities=33% Similarity=0.694 Sum_probs=26.4
Q ss_pred Cccccccccc-----ccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccc
Q 030757 107 FESECVVCLE-----GFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCR 153 (172)
Q Consensus 107 ~~~~C~ICl~-----~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR 153 (172)
....|.+|.. +|+ .+.++.-..|+++||..|...- ...||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r~---s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRRK---SPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhcc---CCCCCchH
Confidence 3456778832 232 2233344479999999997642 22399994
No 122
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.96 E-value=1.8 Score=33.13 Aligned_cols=45 Identities=29% Similarity=0.653 Sum_probs=33.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
.-..|.+|..-...+. +.-.|+-.+|..|+..++.+...||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg~---rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGI---RCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheee---ccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 3457999988655542 22267777999999999999888999943
No 123
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.41 E-value=0.72 Score=36.95 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=37.0
Q ss_pred Cccccccccccccc--CceeeeecC--------CCCcccHHHHHHHHhcC-CCCcccccC
Q 030757 107 FESECVVCLEGFKQ--GQWCRKLVG--------CGHVFHRKCLDTWLLKV-AACPTCRTP 155 (172)
Q Consensus 107 ~~~~C~ICl~~~~~--~~~~~~l~~--------C~H~fh~~Ci~~~~~~~-~~CP~CR~~ 155 (172)
....|.||...|.. ...++.... |+|..+..|++.-+.+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 44679999998883 333444446 99999999999987655 469999874
No 124
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.86 E-value=3.9 Score=33.32 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=37.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC---CCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA---ACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~---~CP~CR~~~~~~~~~~ 163 (172)
....|++=-+.-. ++..++++.|||+.-.+.+++..+.+. .||.|-..-..+...+
T Consensus 335 s~FiCPVlKe~~t-~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~r 393 (396)
T COG5109 335 SLFICPVLKELCT-DENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILR 393 (396)
T ss_pred ceeeccccHhhhc-ccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhc
Confidence 5667887544332 333456669999999999988766543 3999966555444433
No 125
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=70.69 E-value=6.3 Score=25.27 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=19.8
Q ss_pred CcccccccccccccCceeeeecCCCC---cccHHHHHHHHh-cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGH---VFHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H---~fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
....|.||-+++.....--..+.|.. -.|..|.+-=.+ .++.||.|++...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 44679999988764332223335543 468889865444 3456999997655
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.87 E-value=2.9 Score=35.66 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=36.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC-----C---CC--cccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-----A---AC--PTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-----~---~C--P~CR~~~~~~~~ 161 (172)
.....|-||.+.+.. . ...+.|+|.|+..|+..++..+ . +| +-|+..+....+
T Consensus 68 ~~~~~c~ic~~~~~~--~-~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--E-IIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred CccccCCcccCCCcc--h-hhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 456789999998765 2 2344999999999999988643 1 24 456555554443
No 127
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=69.15 E-value=7.5 Score=25.61 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=4.1
Q ss_pred ccccCCCCCC
Q 030757 7 YQHYDDVDVH 16 (172)
Q Consensus 7 ~~~~~~~~~~ 16 (172)
||-+-.++..
T Consensus 6 ~~~~~~~~~~ 15 (91)
T PF01708_consen 6 YQPFPSPQNY 15 (91)
T ss_pred ccCCCCcccc
Confidence 3444444443
No 128
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.77 E-value=2.7 Score=36.84 Aligned_cols=50 Identities=32% Similarity=0.783 Sum_probs=38.3
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
....|.+|+++. . .+ ..+|. |..|...|+-.+..||+|+..+..++-...
T Consensus 478 ~~~~~~~~~~~~-~---~~-~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 478 PNDVCAICYQEM-S---AR-ITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSK 527 (543)
T ss_pred ccCcchHHHHHH-H---hc-ccccc---chhHHHhhhhhccccCCCchhhhcccccCc
Confidence 567899999987 1 13 33777 889999999988999999988776555443
No 129
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=68.64 E-value=3.2 Score=37.87 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=34.8
Q ss_pred CcccccccccccccCce-eeee--cCCCCcccHHHHHHHHhcC------CCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQW-CRKL--VGCGHVFHRKCLDTWLLKV------AACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~-~~~l--~~C~H~fh~~Ci~~~~~~~------~~CP~CR~~~~~ 158 (172)
....|.+|.-++..++. ..+. -.|+|.+|..||..|..+- -.|+.|...+..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 45678888777766321 1222 2499999999999997532 238888776653
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.57 E-value=4.4 Score=33.09 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=36.4
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
...|+||-+.....+....-.+|++..|..|...-......||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 368999999774443222223678888888888877788889999976543
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=67.74 E-value=5.8 Score=23.34 Aligned_cols=42 Identities=26% Similarity=0.691 Sum_probs=20.3
Q ss_pred ccccccccccC------ceeeeecCCCCcccHHHHHHHHhcC-CCCcccc
Q 030757 111 CVVCLEGFKQG------QWCRKLVGCGHVFHRKCLDTWLLKV-AACPTCR 153 (172)
Q Consensus 111 C~ICl~~~~~~------~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~CR 153 (172)
|--|+..+... .....-..|++.|+.+| +.++... -+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 44455555553 12233457999999999 3454433 4599883
No 132
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.24 E-value=2.1 Score=38.86 Aligned_cols=44 Identities=30% Similarity=0.598 Sum_probs=30.7
Q ss_pred CcccccccccccccC----ceeeeecCCCCcccHHHHHHHHhcCCCCccc
Q 030757 107 FESECVVCLEGFKQG----QWCRKLVGCGHVFHRKCLDTWLLKVAACPTC 152 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~C 152 (172)
.+..|.-|.+..... +.+.++ .|+|+||..|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 345799998875532 345556 8999999999987766554 5444
No 133
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=67.17 E-value=5.1 Score=23.39 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=27.2
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
|+-|-+.+..++.+.. .-+..||.+|. .|-.|+..+....
T Consensus 1 C~~C~~~I~~~~~~~~--~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK--AMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE--ETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE--eCCcEEEcccc--------ccCCCCCccCCCe
Confidence 6667777776553321 35677888884 5888888887665
No 134
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=64.40 E-value=11 Score=22.53 Aligned_cols=47 Identities=21% Similarity=0.498 Sum_probs=31.7
Q ss_pred ccccccccccccCceeeeecCCC--CcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCG--HVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~--H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|--|-.++..+..-... |. ..||.+|.+..+ +..||.|...+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3566777777665422222 54 469999999876 46799998777643
No 135
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=64.33 E-value=42 Score=23.15 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=16.2
Q ss_pred HhcCCCCcccccCCccCcccccccc
Q 030757 143 LLKVAACPTCRTPTTFDRFLRNSFY 167 (172)
Q Consensus 143 ~~~~~~CP~CR~~~~~~~~~~~~~~ 167 (172)
+.+...|+.|+++++.+.-+.-..|
T Consensus 82 LGr~D~CM~C~~pLTLd~~legkef 106 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPSLEGKEF 106 (114)
T ss_pred hchhhccCcCCCcCccCchhhcchh
Confidence 3444569999999886655544433
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=62.37 E-value=8.8 Score=20.00 Aligned_cols=37 Identities=27% Similarity=0.732 Sum_probs=23.5
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
|..|-+.+..++... . .=+..||.+|. .|..|+..+.
T Consensus 2 C~~C~~~i~~~~~~~-~-~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVL-R-ALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEE-E-eCCccccccCC--------CCcccCCcCc
Confidence 777877776652222 2 34677888884 4778877654
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.17 E-value=12 Score=25.82 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=30.0
Q ss_pred ccccccccccccCc----------eeeeecCCCCcccHHHHHHHHhcCCCCcccc
Q 030757 109 SECVVCLEGFKQGQ----------WCRKLVGCGHVFHRKCLDTWLLKVAACPTCR 153 (172)
Q Consensus 109 ~~C~ICl~~~~~~~----------~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR 153 (172)
..|--|...|.... ....-..|++.|+.+|-.=+-+.-.+||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999988776421 1112347899999999554444446699995
No 138
>PLN02189 cellulose synthase
Probab=60.17 E-value=6.3 Score=37.12 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=32.2
Q ss_pred CcccccccccccccCceeeeecCCC---CcccHHHHHHHHh-cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG---HVFHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
....|.||-+++..+..-...+.|+ --.|..|.+-=.+ .++.||.|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4458999999876432211223555 4479999853233 3355999998766
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=59.80 E-value=3.1 Score=24.48 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=6.8
Q ss_pred CCcccccCCccCc
Q 030757 148 ACPTCRTPTTFDR 160 (172)
Q Consensus 148 ~CP~CR~~~~~~~ 160 (172)
.||+|.++++...
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 6999999887543
No 140
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=59.74 E-value=12 Score=30.59 Aligned_cols=54 Identities=31% Similarity=0.508 Sum_probs=34.5
Q ss_pred Ccccccccccccc--c-------------CceeeeecCCCCcccHHHHHHHHhc---------CCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFK--Q-------------GQWCRKLVGCGHVFHRKCLDTWLLK---------VAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~--~-------------~~~~~~l~~C~H~fh~~Ci~~~~~~---------~~~CP~CR~~~~~~~ 160 (172)
.+.+|++|+..-. . +-.-....||||+--++-..=|... +..||.|-..+..++
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 4678999986411 0 0001133589999888888888642 234999988876543
No 141
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=59.35 E-value=3.1 Score=34.88 Aligned_cols=31 Identities=29% Similarity=0.743 Sum_probs=0.0
Q ss_pred eecCCCCcccHHHHHHHHh------cCCCCcccccCCccC
Q 030757 126 KLVGCGHVFHRKCLDTWLL------KVAACPTCRTPTTFD 159 (172)
Q Consensus 126 ~l~~C~H~fh~~Ci~~~~~------~~~~CP~CR~~~~~~ 159 (172)
+-+.|||++... .|-. ....||+||..-..-
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~V 341 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPYV 341 (416)
T ss_dssp ----------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCCce
Confidence 446899985432 4532 234599999865443
No 142
>PLN02436 cellulose synthase A
Probab=59.30 E-value=6.6 Score=37.11 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=32.3
Q ss_pred CcccccccccccccCceeeeecCCCCc---ccHHHHHHHHh-cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV---FHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~---fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
....|.||-+++.....=-..+.|+.. .|..|.+-=.+ .++.||.|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 445899999986533211122356654 79999853333 3345999998766
No 143
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=58.92 E-value=27 Score=25.25 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=8.6
Q ss_pred CCCCCCChhHHHHHHHH
Q 030757 26 PKPNPKILPILLKVIIM 42 (172)
Q Consensus 26 ~~~~~~~~~l~~~~ii~ 42 (172)
|-+.|.|++..+.+|++
T Consensus 20 ~~~~psffsthm~tILi 36 (189)
T PF05568_consen 20 PVTPPSFFSTHMYTILI 36 (189)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 34455666655444433
No 144
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=5.5 Score=32.21 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
......|-||...+..+.. .. .|.|-|+..|-..|....+.||.|+.....
T Consensus 102 ~~~~~~~~~~~g~l~vpt~--~q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTR--IQ-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cCCccceeeeeeeEEeccc--cc-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3456678999888776542 22 699999999999999988889999876654
No 145
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.09 E-value=4.3 Score=32.56 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=34.3
Q ss_pred CcccccccccccccCceeeeecCC----CCcccHHHHHHHHhcCC-----------CCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGC----GHVFHRKCLDTWLLKVA-----------ACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C----~H~fh~~Ci~~~~~~~~-----------~CP~CR~~~~ 157 (172)
....|.+|.|.+++.- .+.| .|.||-.|-.+-++++. .||+-...+.
T Consensus 267 apLcCTLC~ERLEDTH----FVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vP 328 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH----FVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVP 328 (352)
T ss_pred CceeehhhhhhhccCc----eeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCccc
Confidence 4578999999988853 3357 69999999998887542 3676655554
No 146
>PF14927 Neurensin: Neurensin
Probab=57.69 E-value=41 Score=24.16 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=15.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 26 PKPNPKILPILLKVIIMTLITSMFFLLLGLVAFL 59 (172)
Q Consensus 26 ~~~~~~~~~l~~~~ii~~~~~~i~~~~~~l~~~~ 59 (172)
+...+.-.+...+-+ .++..+++++.|++++.
T Consensus 32 ~~~~~~~w~s~~wkV--~~i~g~l~Ll~Gi~~l~ 63 (140)
T PF14927_consen 32 IQPSPSRWSSVCWKV--GFISGLLLLLLGIVALT 63 (140)
T ss_pred CCCCCCCCcchhHHH--HHHHHHHHHHHHHHHHH
Confidence 333444444444433 44455555566655444
No 147
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=57.48 E-value=4.8 Score=22.99 Aligned_cols=43 Identities=26% Similarity=0.554 Sum_probs=26.1
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHh------cCCCCcccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL------KVAACPTCR 153 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~------~~~~CP~CR 153 (172)
.|.||...-..++.+.- -.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C-~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQC-DSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEB-STTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEc-CCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 37888884444433332 36788899999865432 122377775
No 148
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=8.3 Score=30.38 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=28.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL 144 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~ 144 (172)
.-+.|+.||.++..+ +..+=||+|+.+||-+++.
T Consensus 42 ~FdcCsLtLqPc~dP----vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP----VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC----ccCCCCeeeeHHHHHHHHH
Confidence 456799999999884 5557899999999998863
No 149
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=55.86 E-value=40 Score=22.23 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=29.9
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
..|.-|...+.--|.+++ -.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~~lIPi-------------~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPI-------------LSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccchH-------------HHHHHhCCCCcccCCCCCh
Confidence 469989888877766664 4899999999999998874
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=6.6 Score=32.96 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=42.7
Q ss_pred CCCCCCHHHHhccCccccccCCCCC--CCCcccccccccccccCceee--eecCCCCcccHHHHHHHHhcCCCCccc
Q 030757 80 HSDGLSPKELKSLSQFKISKRNESQ--PGFESECVVCLEGFKQGQWCR--KLVGCGHVFHRKCLDTWLLKVAACPTC 152 (172)
Q Consensus 80 ~~~~l~~~~~~~l~~~~~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~--~l~~C~H~fh~~Ci~~~~~~~~~CP~C 152 (172)
...+++=++.+++....+.+..... ...-..|+.|.-.++....+- .- .|||-|+..|...|...+..|..|
T Consensus 276 wh~~~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 276 WHANLSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCCCCCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCc
Confidence 3445777777776654433311100 023457998876655433222 23 389999999999998776666433
No 151
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=52.21 E-value=46 Score=20.05 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLITSMFFLLLGLVA 57 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~~i~~~~~~l~~ 57 (172)
.|++.|-. +.|.+....++++.++++
T Consensus 13 kFW~YFtL-i~M~lti~~~~Iv~si~~ 38 (64)
T PF03579_consen 13 KFWTYFTL-IFMMLTIGFFFIVTSIMA 38 (64)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555543 344444444444444433
No 152
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.01 E-value=13 Score=35.18 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=32.5
Q ss_pred CcccccccccccccCceeeeecCCCCc---ccHHHHHHHHh-cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV---FHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~---fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
....|.||-++...+..--..+.|+.. .|..|.+-=.+ .++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 556899999886643221122356554 79999843222 3355999998766
No 153
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=51.88 E-value=5.9 Score=24.28 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=17.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL 143 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~ 143 (172)
+...|.+|...|.--..-.--..||++|+.+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4567999999986532111123689999999976543
No 154
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.35 E-value=37 Score=21.98 Aligned_cols=9 Identities=0% Similarity=0.272 Sum_probs=3.9
Q ss_pred HHHHhccCc
Q 030757 86 PKELKSLSQ 94 (172)
Q Consensus 86 ~~~~~~l~~ 94 (172)
...++++..
T Consensus 40 d~li~RIre 48 (81)
T PF00558_consen 40 DRLIERIRE 48 (81)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 344444443
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=50.93 E-value=12 Score=21.77 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=23.9
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHh
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL 144 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~ 144 (172)
..|.+|-..|.....-..-..||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468888877765332122236899999999876543
No 156
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=50.60 E-value=64 Score=20.55 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=7.9
Q ss_pred CCCCCHHHHhccC
Q 030757 81 SDGLSPKELKSLS 93 (172)
Q Consensus 81 ~~~l~~~~~~~l~ 93 (172)
..+++.++.+.+.
T Consensus 33 ~~gLs~~d~~~L~ 45 (75)
T PF06667_consen 33 SQGLSEEDEQRLQ 45 (75)
T ss_pred CCCCCHHHHHHHH
Confidence 3567777666554
No 157
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.55 E-value=12 Score=27.23 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=28.5
Q ss_pred cccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 112 VVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 112 ~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
.||+.--...+..-.-+.=.+-||.+|..+-.. .||.|..++...-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCceec
Confidence 356654333332222222345699999887654 499999998865433
No 158
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=48.80 E-value=11 Score=25.87 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=8.6
Q ss_pred CCCCHHHHhccCccc
Q 030757 82 DGLSPKELKSLSQFK 96 (172)
Q Consensus 82 ~~l~~~~~~~l~~~~ 96 (172)
.+.+-+++++++...
T Consensus 102 EgKdIdeLKKiN~mI 116 (128)
T PF15145_consen 102 EGKDIDELKKINSMI 116 (128)
T ss_pred ccCCHHHHHHHHHHH
Confidence 455566777665433
No 160
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=48.64 E-value=12 Score=35.44 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=32.3
Q ss_pred CcccccccccccccCceeeeecCCCCc---ccHHHHHHHH-hcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV---FHRKCLDTWL-LKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~---fh~~Ci~~~~-~~~~~CP~CR~~~~ 157 (172)
....|.||-+++.....--..+.|+.. .|..|.+==. +.++.||.|++...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345899999987643321122356655 7999984222 23456999998765
No 161
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=47.34 E-value=53 Score=18.68 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030757 38 KVIIMTLITSMFFLLLGLV 56 (172)
Q Consensus 38 ~~ii~~~~~~i~~~~~~l~ 56 (172)
..++.+++++.+|.++|+.
T Consensus 6 t~iFsvvIil~If~~iGl~ 24 (49)
T PF11044_consen 6 TTIFSVVIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 162
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.08 E-value=9.5 Score=20.00 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=6.9
Q ss_pred CCCCcccccC
Q 030757 146 VAACPTCRTP 155 (172)
Q Consensus 146 ~~~CP~CR~~ 155 (172)
...||+|...
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 3469999663
No 163
>PLN02833 glycerol acyltransferase family protein
Probab=45.89 E-value=66 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 030757 11 DDVDVHRRHDSPPLPPKPN 29 (172)
Q Consensus 11 ~~~~~~~~~~~~~~p~~~~ 29 (172)
-|..+++...++++++++.
T Consensus 60 ~dd~~~~~f~~~~~~~~n~ 78 (376)
T PLN02833 60 VDDSFTRCFKSNPPEPWNW 78 (376)
T ss_pred hhhhhhhccCCCCCCCcch
Confidence 3667888888888877665
No 164
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=44.53 E-value=1.6 Score=27.41 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=19.6
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
..|+.|..++.... +|..|..|-..+ .....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECccccccc-eecccCCCcccHHH
Confidence 46888888765422 555666675542 33345888888776
No 165
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=44.38 E-value=3.3 Score=20.03 Aligned_cols=6 Identities=67% Similarity=1.807 Sum_probs=2.7
Q ss_pred Cccccc
Q 030757 149 CPTCRT 154 (172)
Q Consensus 149 CP~CR~ 154 (172)
||.|.+
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 444433
No 166
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=42.98 E-value=15 Score=21.50 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=12.8
Q ss_pred CCCCcccHHHHHHHHhcCCCCccc
Q 030757 129 GCGHVFHRKCLDTWLLKVAACPTC 152 (172)
Q Consensus 129 ~C~H~fh~~Ci~~~~~~~~~CP~C 152 (172)
.|||.|-..=-++- .....||.|
T Consensus 33 ~Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc-cCCCCCCCC
Confidence 56676554433332 445569987
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.98 E-value=36 Score=31.26 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=19.6
Q ss_pred eeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 125 RKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 125 ~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
...+.|+|.-|..=|.. .+.||+|...+.+
T Consensus 1157 WlC~~CkH~a~~~EIs~----y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1157 WLCPRCKHRAHQHEISK----YNCCPLCHSMESF 1186 (1189)
T ss_pred EEccccccccccccccc----cccCccccChhhc
Confidence 34456888777655532 3569999887654
No 168
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.52 E-value=16 Score=28.89 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=32.6
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC--CCcccccC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRTP 155 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~~ 155 (172)
...|+|=...+.++. +-..|||+|-.+-+...+.... .||+-..+
T Consensus 176 s~rdPis~~~I~nPv---iSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPV---ISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchh---hhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 456888777777753 3348999999999999987644 38864443
No 169
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=42.04 E-value=44 Score=24.49 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=7.4
Q ss_pred CChhHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLIT 46 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~ 46 (172)
+++.+++.+.+++.++
T Consensus 30 R~i~l~~Ri~~~iSIi 45 (161)
T PHA02673 30 RYIKLFFRLMAAIAII 45 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444433
No 170
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.95 E-value=26 Score=17.74 Aligned_cols=29 Identities=24% Similarity=0.717 Sum_probs=9.8
Q ss_pred cccccccccccCceeeeecCCCCcccHHHH
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCL 139 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci 139 (172)
.|.+|.+....+ ....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~-~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-ceEECccCCCccChhcC
Confidence 477888776552 22333478888888885
No 171
>PLN02400 cellulose synthase
Probab=40.65 E-value=14 Score=35.13 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=31.9
Q ss_pred CcccccccccccccCceeeeecCCCCc---ccHHHHHHHH-hcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV---FHRKCLDTWL-LKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~---fh~~Ci~~~~-~~~~~CP~CR~~~~ 157 (172)
....|.||-+++.....=-..+.|+.+ .|..|.+==. +.++.||.|++...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 445899999987643221122356554 7999984211 23356999998766
No 172
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=40.27 E-value=71 Score=26.47 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 35 ILLKVIIMTLITSMFFLLLGLVAFLLLP 62 (172)
Q Consensus 35 l~~~~ii~~~~~~i~~~~~~l~~~~~l~ 62 (172)
++++++..+.-+.-|+++++..+++.+.
T Consensus 274 illSilyfySSf~RfllVm~aal~iYl~ 301 (391)
T KOG4583|consen 274 ILLSILYFYSSFSRFLLVMGAALFIYLH 301 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444344444444444444444443
No 173
>PLN02195 cellulose synthase A
Probab=39.72 E-value=27 Score=32.85 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=32.0
Q ss_pred CcccccccccccccCceeeeecCC---CCcccHHHHHHHHh-cCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGC---GHVFHRKCLDTWLL-KVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C---~H~fh~~Ci~~~~~-~~~~CP~CR~~~~~ 158 (172)
....|.||-++...+..--..+.| +--.|..|.+==.+ .++.||.|++....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 445799999876543211122245 44479999842222 33459999998873
No 174
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.55 E-value=1.6e+02 Score=21.87 Aligned_cols=8 Identities=75% Similarity=1.024 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 030757 54 GLVAFLLL 61 (172)
Q Consensus 54 ~l~~~~~l 61 (172)
|++.+++.
T Consensus 126 Glvff~lS 133 (181)
T KOG3249|consen 126 GLVFFLLS 133 (181)
T ss_pred hHHHHHHH
Confidence 33333333
No 175
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=39.31 E-value=90 Score=19.04 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030757 42 MTLITSMFFLLLGLVAFLLLPILFTSLNRH 71 (172)
Q Consensus 42 ~~~~~~i~~~~~~l~~~~~l~~~~~~~~~~ 71 (172)
+++..++-|.+.|.+.+.++...+....|.
T Consensus 31 iflailfgftiagwlvvfcirlv~sailr~ 60 (73)
T PF07069_consen 31 IFLAILFGFTIAGWLVVFCIRLVCSAILRA 60 (73)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 333344445556666666665555544443
No 176
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.21 E-value=3.6 Score=32.98 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=20.5
Q ss_pred CcccccccccccccCceeeeec-CCCCcccHHHHHHHHhcCCCCcccccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLDTWLLKVAACPTCRTP 155 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~~~~~~~~CP~CR~~ 155 (172)
....|+||-..-.-......-. .-.|.+|..|-.+|-.....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3468999976533221100000 013567888999998777889999554
No 177
>PRK09458 pspB phage shock protein B; Provisional
Probab=38.51 E-value=1e+02 Score=19.59 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=7.9
Q ss_pred CCCCHHHHhccC
Q 030757 82 DGLSPKELKSLS 93 (172)
Q Consensus 82 ~~l~~~~~~~l~ 93 (172)
.+++.++.+.+.
T Consensus 34 ~~Ls~~d~~~L~ 45 (75)
T PRK09458 34 QGLSQEEQQRLA 45 (75)
T ss_pred CCCCHHHHHHHH
Confidence 567777766654
No 178
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=38.36 E-value=20 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=7.8
Q ss_pred cccccccccccCc
Q 030757 110 ECVVCLEGFKQGQ 122 (172)
Q Consensus 110 ~C~ICl~~~~~~~ 122 (172)
.|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 4666766665543
No 179
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=38.29 E-value=80 Score=27.55 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 030757 137 KCLDTWLL 144 (172)
Q Consensus 137 ~Ci~~~~~ 144 (172)
.++..|++
T Consensus 293 GsL~dyL~ 300 (534)
T KOG3653|consen 293 GSLCDYLK 300 (534)
T ss_pred CcHHHHHH
Confidence 34445544
No 180
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=37.43 E-value=79 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=10.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHH
Q 030757 25 PPKPNPKILPILLKVIIMTLIT 46 (172)
Q Consensus 25 p~~~~~~~~~l~~~~ii~~~~~ 46 (172)
||-....|.+.++|.+|.++++
T Consensus 45 p~~~~~~~~~~l~w~~I~FliL 66 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGLF 66 (204)
T ss_pred CCCcchhccHHHHHHHHHHHHH
Confidence 4433344555666655544443
No 181
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=37.04 E-value=2.1e+02 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 030757 12 DVDVHRRHDSPPLPPKPNPKILPILLKVIIMTLITSMF 49 (172)
Q Consensus 12 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~ii~~~~~~i~ 49 (172)
.+.+||..+++..-++..+.++-+.+.++.+.++..+.
T Consensus 68 ~pN~~r~~~~s~~~~n~~~~l~kl~is~~~v~v~n~~~ 105 (247)
T PF03303_consen 68 NPNTHRENESSKVADNSSPLLLKLLISFLPVSVFNFVA 105 (247)
T ss_pred CCcchhhcccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777888887777777666665555444
No 182
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=36.59 E-value=41 Score=26.84 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=26.8
Q ss_pred CcccccccccccccCceeeeecCCCC-cccHHHHHHHH-hcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGH-VFHRKCLDTWL-LKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~~~-~~~~~CP~CR~~~~~ 158 (172)
.-..|.||++--..+..-.-++--.- .-|.+|.+.|- ..+..|| |..+..
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p--rsk~sk 80 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP--RSKLSK 80 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC--cccccc
Confidence 34457777765433321111111111 36899999994 4566798 444443
No 183
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=36.56 E-value=93 Score=18.42 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030757 40 IIMTLITSMFFLLLGLVAFL 59 (172)
Q Consensus 40 ii~~~~~~i~~~~~~l~~~~ 59 (172)
++-.++..++++++|++++.
T Consensus 26 iik~vismimylilGi~L~y 45 (54)
T PF04835_consen 26 IIKSVISMIMYLILGIALIY 45 (54)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445555566666665554
No 184
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.27 E-value=24 Score=21.89 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=8.2
Q ss_pred ccHHHHHHHHh
Q 030757 134 FHRKCLDTWLL 144 (172)
Q Consensus 134 fh~~Ci~~~~~ 144 (172)
||..|+..|..
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 185
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=35.69 E-value=1.3e+02 Score=19.77 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=8.4
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 030757 29 NPKILPILLKVIIMTLITSM 48 (172)
Q Consensus 29 ~~~~~~l~~~~ii~~~~~~i 48 (172)
+.=+.++++.+.++-+++++
T Consensus 31 P~W~~~~m~~lm~~Gl~Wlv 50 (87)
T PRK02251 31 PRWFVPLFVALMIIGLIWLV 50 (87)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 186
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=35.34 E-value=33 Score=28.08 Aligned_cols=44 Identities=9% Similarity=-0.057 Sum_probs=32.1
Q ss_pred CcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPT 156 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~ 156 (172)
....|-.|-+.... .++.+|+|. |+.+|.. +.-...||.|....
T Consensus 342 s~~~~~~~~~~~~s----t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS----TIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee----eEeecCCcccChhhhhh--cccCCccccccccc
Confidence 45678888776555 467799996 8999987 44556799997654
No 187
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=35.19 E-value=30 Score=23.15 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=21.2
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
...|.||......--+... ..|...||..|....
T Consensus 55 ~~~C~iC~~~~G~~i~C~~-~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSH-PGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCC-CCCCcCCCHHHHHHC
Confidence 4689999987222111111 247778999998653
No 188
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.89 E-value=8.3 Score=19.26 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.9
Q ss_pred ccccccc
Q 030757 111 CVVCLEG 117 (172)
Q Consensus 111 C~ICl~~ 117 (172)
|+-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4444443
No 189
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=34.86 E-value=9.6 Score=18.95 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=7.1
Q ss_pred CCcccccCCcc
Q 030757 148 ACPTCRTPTTF 158 (172)
Q Consensus 148 ~CP~CR~~~~~ 158 (172)
.||+|.+.+..
T Consensus 3 ~CPiC~~~v~~ 13 (26)
T smart00734 3 QCPVCFREVPE 13 (26)
T ss_pred cCCCCcCcccH
Confidence 47777766643
No 190
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.35 E-value=1.2e+02 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=6.7
Q ss_pred CCCCHHHHhccC
Q 030757 82 DGLSPKELKSLS 93 (172)
Q Consensus 82 ~~l~~~~~~~l~ 93 (172)
.+++.++.+++.
T Consensus 34 ~~ls~~d~~~L~ 45 (75)
T TIGR02976 34 ASLSTDDQALLQ 45 (75)
T ss_pred CCCCHHHHHHHH
Confidence 356666655553
No 191
>PHA03093 EEV glycoprotein; Provisional
Probab=33.34 E-value=72 Score=23.98 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLITSM 48 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~~i 48 (172)
+++.+++.+.+++.++.+
T Consensus 33 r~i~i~~RisiiiSIlsL 50 (185)
T PHA03093 33 KCIGICIRISIIISILSL 50 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666555554444
No 192
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.99 E-value=32 Score=31.10 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=32.7
Q ss_pred cccccccccccCceeeeecCCCC-cccHHHHHHHHhcC------CCCcccccCCccCc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGH-VFHRKCLDTWLLKV------AACPTCRTPTTFDR 160 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~~~~~~------~~CP~CR~~~~~~~ 160 (172)
.|+||-..+.- .....|+| ..+..|..+..... ..||.||..+....
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 58999875443 23448999 69999988875422 33899999765433
No 193
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.86 E-value=30 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=18.4
Q ss_pred cccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 133 VFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 133 ~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
.||++|...-.. +||+|..++..+...
T Consensus 29 afcskcgeati~---qcp~csasirgd~~v 55 (160)
T COG4306 29 AFCSKCGEATIT---QCPICSASIRGDYYV 55 (160)
T ss_pred HHHhhhchHHHh---cCCccCCccccccee
Confidence 477888766543 499998887755443
No 194
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.77 E-value=7.8 Score=21.56 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=13.5
Q ss_pred CCCCcccHHHHHHHHhcCCCCccccc
Q 030757 129 GCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 129 ~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 67776653321110 22345999987
No 195
>PHA02909 hypothetical protein; Provisional
Probab=31.71 E-value=1.2e+02 Score=18.19 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=6.1
Q ss_pred CChhHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLI 45 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~ 45 (172)
+.+-+...++..+++
T Consensus 30 ntfcimvsfilfvii 44 (72)
T PHA02909 30 NTFCIMVSFILFVII 44 (72)
T ss_pred cchhHHHHHHHHHHH
Confidence 334444444443333
No 196
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=31.27 E-value=31 Score=20.92 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=7.5
Q ss_pred CCCcccccCCc
Q 030757 147 AACPTCRTPTT 157 (172)
Q Consensus 147 ~~CP~CR~~~~ 157 (172)
..||+|+..+.
T Consensus 3 ~~CPlCkt~~n 13 (61)
T PF05715_consen 3 SLCPLCKTTLN 13 (61)
T ss_pred ccCCcccchhh
Confidence 45888877663
No 197
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=30.89 E-value=94 Score=22.70 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=8.0
Q ss_pred CChhHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLIT 46 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~ 46 (172)
.+++.++|.++.++++
T Consensus 8 ~~~sqifw~iI~FlIL 23 (155)
T PRK06569 8 TYYSQIFWLIVTFGLL 23 (155)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3455555555544443
No 198
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.45 E-value=34 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.555 Sum_probs=8.2
Q ss_pred cccccccccccCc
Q 030757 110 ECVVCLEGFKQGQ 122 (172)
Q Consensus 110 ~C~ICl~~~~~~~ 122 (172)
+|+=|...|..++
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 5677776666544
No 199
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.32 E-value=55 Score=22.16 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHhcC---------CCCcccccC
Q 030757 131 GHVFHRKCLDTWLLKV---------AACPTCRTP 155 (172)
Q Consensus 131 ~H~fh~~Ci~~~~~~~---------~~CP~CR~~ 155 (172)
.=.||..|+..+.... -.||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 5569999988876432 239999873
No 200
>PF15102 TMEM154: TMEM154 protein family
Probab=30.10 E-value=11 Score=27.21 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=6.8
Q ss_pred cHHHHHHHHhc
Q 030757 135 HRKCLDTWLLK 145 (172)
Q Consensus 135 h~~Ci~~~~~~ 145 (172)
-..=+++|...
T Consensus 126 Emeeldkwm~s 136 (146)
T PF15102_consen 126 EMEELDKWMNS 136 (146)
T ss_pred hHHHHHhHHHh
Confidence 34557778754
No 201
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=29.83 E-value=1.5e+02 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 36 LLKVIIMTLITSMFFLLLGLVAFL 59 (172)
Q Consensus 36 ~~~~ii~~~~~~i~~~~~~l~~~~ 59 (172)
|-|++....+++.+.+++.+++++
T Consensus 12 FEwFLF~~AIFiAItIlYILLalL 35 (117)
T PF07234_consen 12 FEWFLFFGAIFIAITILYILLALL 35 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444444444444433
No 202
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=29.72 E-value=14 Score=29.72 Aligned_cols=40 Identities=30% Similarity=0.687 Sum_probs=29.9
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
...|+.|.+.+.+...|+.. -.|+||..|.. |-+|++.+.
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~ 131 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLA 131 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccc
Confidence 45699999988777655533 67899999964 778877665
No 203
>PRK12705 hypothetical protein; Provisional
Probab=29.71 E-value=1.1e+02 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.458 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 43 TLITSMFFLLLGLVAFLLLPILFTSL 68 (172)
Q Consensus 43 ~~~~~i~~~~~~l~~~~~l~~~~~~~ 68 (172)
.+++++++++++++.+++..++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (508)
T PRK12705 4 SILLVILLLLIGLLLGVLVVLLKKRQ 29 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666555544
No 204
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=29.71 E-value=1.9e+02 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 34 PILLKVIIMTLITSMFFLLLGLVAFLLLPIL 64 (172)
Q Consensus 34 ~l~~~~ii~~~~~~i~~~~~~l~~~~~l~~~ 64 (172)
.+--.+++.+++++++++++|++.+.-+.-+
T Consensus 3 ~I~~KL~~~f~~~~~l~~~~~~~~~~~l~~~ 33 (181)
T PF12729_consen 3 SIRTKLILGFGLIILLLLIVGIVGLYSLSQI 33 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666555533
No 205
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.33 E-value=57 Score=29.38 Aligned_cols=50 Identities=14% Similarity=0.410 Sum_probs=30.0
Q ss_pred CcccccccccccccCceeeeecCCCCccc--HHHHHHHHh-----cCC--CCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFH--RKCLDTWLL-----KVA--ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh--~~Ci~~~~~-----~~~--~CP~CR~~~~~~~~~~~ 164 (172)
....|+|+...+. +||.+..| ..|.+.-+- +.. .||+|.+...++++.-+
T Consensus 305 vSL~CPl~~~Rm~--------~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD 363 (636)
T KOG2169|consen 305 VSLNCPLSKMRMS--------LPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIID 363 (636)
T ss_pred eEecCCcccceee--------cCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhh
Confidence 3456887766433 35544332 377665432 112 39999999888887754
No 206
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=29.17 E-value=2.3e+02 Score=20.68 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=3.9
Q ss_pred CCCCHHHHh
Q 030757 82 DGLSPKELK 90 (172)
Q Consensus 82 ~~l~~~~~~ 90 (172)
..++.+++-
T Consensus 97 ~~l~~dElA 105 (153)
T PRK14584 97 PDLDDDELA 105 (153)
T ss_pred CCCChHHHH
Confidence 344444443
No 207
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.04 E-value=11 Score=22.31 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=12.0
Q ss_pred CCCCcccHHHHHHH
Q 030757 129 GCGHVFHRKCLDTW 142 (172)
Q Consensus 129 ~C~H~fh~~Ci~~~ 142 (172)
.|+|.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68899999998887
No 208
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=29.03 E-value=18 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCChhHHHHHHHHHHHH
Q 030757 26 PKPNPKILPILLKVIIMTLIT 46 (172)
Q Consensus 26 ~~~~~~~~~l~~~~ii~~~~~ 46 (172)
...+|-.|.+++|+.+.+++.
T Consensus 48 ~~dypviFnIiLW~~v~l~~a 68 (98)
T PF07850_consen 48 SSDYPVIFNIILWFSVVLALA 68 (98)
T ss_dssp ---------------------
T ss_pred CCCchHHHHHHHHHHHHHHHH
Confidence 445566666666665555443
No 209
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=28.32 E-value=1.3e+02 Score=17.52 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 030757 34 PILLKVIIMTLITSMFFLLLGL 55 (172)
Q Consensus 34 ~l~~~~ii~~~~~~i~~~~~~l 55 (172)
.....++++.+++++++..+..
T Consensus 26 ~~t~~Vl~~~~i~~~~~~~vD~ 47 (57)
T PF00584_consen 26 KSTIIVLVFVIIFGLFFFLVDL 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 210
>PF13994 PgaD: PgaD-like protein
Probab=28.08 E-value=2.2e+02 Score=20.06 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.1
Q ss_pred CCHHHHh
Q 030757 84 LSPKELK 90 (172)
Q Consensus 84 l~~~~~~ 90 (172)
++.+++-
T Consensus 101 ~~~~elA 107 (138)
T PF13994_consen 101 VSDEELA 107 (138)
T ss_pred CCHHHHH
Confidence 4444443
No 211
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=27.86 E-value=12 Score=30.28 Aligned_cols=39 Identities=31% Similarity=0.607 Sum_probs=28.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA 147 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~ 147 (172)
..+|.+|++++..+...... .|.-.+|..|+..|+....
T Consensus 214 ~rvC~~CF~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDRE-DSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchh-hcccccccccccccccccc
Confidence 34899999999764444444 5666899999999987543
No 212
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=27.74 E-value=29 Score=18.92 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=9.6
Q ss_pred CCcccccCCccCccccccc
Q 030757 148 ACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 148 ~CP~CR~~~~~~~~~~~~~ 166 (172)
.||.|...+....-....|
T Consensus 3 ~CP~Cg~~lv~r~~k~g~F 21 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKKGKF 21 (39)
T ss_pred CCCCCCceeEEEECCCCCE
Confidence 4666665555444333333
No 213
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=27.48 E-value=34 Score=20.73 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=9.1
Q ss_pred CCCcccccCCcc
Q 030757 147 AACPTCRTPTTF 158 (172)
Q Consensus 147 ~~CP~CR~~~~~ 158 (172)
..||+|..+...
T Consensus 40 p~CPlC~s~M~~ 51 (59)
T PF14169_consen 40 PVCPLCKSPMVS 51 (59)
T ss_pred ccCCCcCCcccc
Confidence 459999887653
No 214
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=27.40 E-value=52 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.524 Sum_probs=17.8
Q ss_pred CCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 130 CGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 130 C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
||+.-|.--+.++.. ..+||.|+.+..+
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp 92 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNP 92 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCc
Confidence 666555555555533 2449999888775
No 215
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.39 E-value=1.2e+02 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 34 PILLKVIIMTLITSMFFLLLGLVAFLLL 61 (172)
Q Consensus 34 ~l~~~~ii~~~~~~i~~~~~~l~~~~~l 61 (172)
.+++.+++.++-.+=+++++|+++|++-
T Consensus 22 ~YYlryfFlF~SLIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 22 WYYLRYFFLFVSLIQFLIILGLVLFMVY 49 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444445556666665544
No 216
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.32 E-value=41 Score=21.49 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=21.0
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
...|.+|.......-... ...|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~-~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCS-HPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEe-CCCCCcEEChHHHcc
Confidence 357999997622211122 236888899999864
No 217
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.17 E-value=37 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=10.8
Q ss_pred cCCCCcccccCCccCc
Q 030757 145 KVAACPTCRTPTTFDR 160 (172)
Q Consensus 145 ~~~~CP~CR~~~~~~~ 160 (172)
.++.||.|..++..++
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 3466888887777543
No 218
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.16 E-value=64 Score=21.57 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=25.6
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHH
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL 143 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~ 143 (172)
-.|.||-+.+..++..... + .-..|.+|+.+-.
T Consensus 7 wkC~VCg~~iieGqkFTF~-~-kGsVH~eCl~~s~ 39 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFT-K-KGSVHYECLAESK 39 (103)
T ss_pred eeEeeeCCEeeeccEEEEe-e-CCcchHHHHHHHH
Confidence 4699999999999876655 5 4457999987654
No 219
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=26.47 E-value=32 Score=26.98 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=29.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--CCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--AACPT 151 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~ 151 (172)
+..|+|-+.++..+ ..-..|+|.|-.+-|...+... ..||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 56899987765553 2224899999999999998743 44764
No 220
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=1.2e+02 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 030757 24 LPPKPNPKILPILLKVIIMTLITSMFFL 51 (172)
Q Consensus 24 ~p~~~~~~~~~l~~~~ii~~~~~~i~~~ 51 (172)
.||+.++..++..+..+++.-+++++.+
T Consensus 190 ~PeKRp~~~lS~iFt~iiv~pll~Llv~ 217 (287)
T KOG2447|consen 190 APEKRPAKPLSDIFTGIIVSPLLGLLVL 217 (287)
T ss_pred CCCcCccchhHHHHHHHHHHHHHHHHHH
Confidence 5788899999998888887766665554
No 221
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.20 E-value=1.2e+02 Score=17.76 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 32 ILPILLKVIIMTLITSMFFLLLGLVAF 58 (172)
Q Consensus 32 ~~~l~~~~ii~~~~~~i~~~~~~l~~~ 58 (172)
|.-..-++=+.-+++..+++++|++++
T Consensus 7 F~YDy~tLrigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 7 FYYDYETLRIGGLIFAGVLFILGILII 33 (50)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHhhccchHHHHHHHHHHHHHH
Confidence 333344444444555555555555333
No 222
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=26.17 E-value=27 Score=19.08 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=9.7
Q ss_pred CCcccccCCccCcc
Q 030757 148 ACPTCRTPTTFDRF 161 (172)
Q Consensus 148 ~CP~CR~~~~~~~~ 161 (172)
.||.|+..+....+
T Consensus 1 ~CP~C~~~l~~~~~ 14 (41)
T PF13453_consen 1 KCPRCGTELEPVRL 14 (41)
T ss_pred CcCCCCcccceEEE
Confidence 48999887665444
No 223
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.01 E-value=27 Score=30.14 Aligned_cols=56 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred Cccccccccccc-ccCceeeeecCCCCcccHHHHHHHHhcC----C----CCcccccCCccCccc
Q 030757 107 FESECVVCLEGF-KQGQWCRKLVGCGHVFHRKCLDTWLLKV----A----ACPTCRTPTTFDRFL 162 (172)
Q Consensus 107 ~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~----~CP~CR~~~~~~~~~ 162 (172)
.+..|.+|..-- ...+.+..--.|+-.||..|.+...... . -|=.|+..-.....+
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~ 231 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRL 231 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcccc
Confidence 455699998532 2223222223456679999987765421 1 288887755544433
No 224
>PHA02849 putative transmembrane protein; Provisional
Probab=25.25 E-value=1.9e+02 Score=18.54 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.6
Q ss_pred HHhccCccccc
Q 030757 88 ELKSLSQFKIS 98 (172)
Q Consensus 88 ~~~~l~~~~~~ 98 (172)
....+...-|.
T Consensus 62 sF~~Ld~VYYT 72 (82)
T PHA02849 62 SFTHLNNVYYT 72 (82)
T ss_pred hHHHhcCEEec
Confidence 33444444443
No 225
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.53 E-value=53 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=18.5
Q ss_pred ccHHHHHHHHhcCCCCcccccCCccC
Q 030757 134 FHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 134 fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
-|..|-.+--.+...||+|++.-...
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccC
Confidence 56778776555566799998876543
No 226
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=23.94 E-value=1.6e+02 Score=17.23 Aligned_cols=10 Identities=30% Similarity=1.138 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 030757 49 FFLLLGLVAF 58 (172)
Q Consensus 49 ~~~~~~l~~~ 58 (172)
+++++|++.+
T Consensus 15 I~~lIgfity 24 (53)
T PF13131_consen 15 IFFLIGFITY 24 (53)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 227
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.83 E-value=2.4e+02 Score=19.09 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=12.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHH
Q 030757 25 PPKPNPKILPILLKVIIMTLITS 47 (172)
Q Consensus 25 p~~~~~~~~~l~~~~ii~~~~~~ 47 (172)
.|....+.++.++.+++..+...
T Consensus 9 ~~~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 9 GPGEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCCCcccHhHHHHHHHHHHHH
Confidence 34444666776666555444433
No 228
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=23.74 E-value=3.2e+02 Score=20.50 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCHHHHh
Q 030757 47 SMFFLLLGLVAFLLLPILFTSLNRHHDRHRGACHSDGLSPKELK 90 (172)
Q Consensus 47 ~i~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (172)
.+++.++|+++..+-.+...++.|..++.+.......-++.+..
T Consensus 58 gl~~a~~gl~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~ 101 (183)
T PF12263_consen 58 GLFLAICGLVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVV 101 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 34444555555555545555555555544432333333444433
No 229
>PRK01343 zinc-binding protein; Provisional
Probab=23.69 E-value=46 Score=20.03 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=8.8
Q ss_pred CCCcccccCCc
Q 030757 147 AACPTCRTPTT 157 (172)
Q Consensus 147 ~~CP~CR~~~~ 157 (172)
..||+|+++..
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 45999999865
No 230
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=23.58 E-value=2e+02 Score=18.18 Aligned_cols=27 Identities=26% Similarity=0.720 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 42 MTLITSMFFLLLGLVAFLLLPILFTSL 68 (172)
Q Consensus 42 ~~~~~~i~~~~~~l~~~~~l~~~~~~~ 68 (172)
+.+++-+.|++.|.+-+..+.++.+++
T Consensus 51 YTl~FClWFLlLGaiEy~viRfiwrRw 77 (82)
T PF06643_consen 51 YTLVFCLWFLLLGAIEYFVIRFIWRRW 77 (82)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555666777777777666665443
No 231
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=23.45 E-value=2.3e+02 Score=20.69 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=5.0
Q ss_pred ccccCCccC
Q 030757 151 TCRTPTTFD 159 (172)
Q Consensus 151 ~CR~~~~~~ 159 (172)
+|..+++..
T Consensus 175 mC~aD~tl~ 183 (217)
T PF11807_consen 175 MCHADTTLE 183 (217)
T ss_pred hccCCCcee
Confidence 556665544
No 232
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=23.40 E-value=1.4e+02 Score=17.39 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 030757 34 PILLKVIIMTLITSMFFLLLG 54 (172)
Q Consensus 34 ~l~~~~ii~~~~~~i~~~~~~ 54 (172)
.....++++.+++.+++..+.
T Consensus 25 ~~t~~Vi~~~~~~~~~~~~~D 45 (55)
T TIGR00964 25 TYTIVVIVFVIFFSLFLFGVD 45 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 233
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=23.38 E-value=66 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=19.8
Q ss_pred cccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 133 VFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 133 ~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
.-|..|-.+.-.+...||+|+..-....
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 3567787776666677999988765443
No 234
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=23.10 E-value=2.3e+02 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=7.8
Q ss_pred CCChhHHHHHHHHHHHHH
Q 030757 30 PKILPILLKVIIMTLITS 47 (172)
Q Consensus 30 ~~~~~l~~~~ii~~~~~~ 47 (172)
.+.-++|+.-+|+.+++.
T Consensus 57 ~g~~~lffvglii~LivS 74 (128)
T PF15145_consen 57 NGSRSLFFVGLIIVLIVS 74 (128)
T ss_pred CCceeehHHHHHHHHHHH
Confidence 334444444444444333
No 235
>COG5488 Integral membrane protein [Function unknown]
Probab=23.06 E-value=2.9e+02 Score=20.21 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 030757 26 PKPNPKILPILLKVIIMTLITSMFFLLLGL 55 (172)
Q Consensus 26 ~~~~~~~~~l~~~~ii~~~~~~i~~~~~~l 55 (172)
+.++-.+.-+...+.++.++..+||++.|.
T Consensus 25 Slg~rgf~~lm~~~~~~~~~v~~ff~~igA 54 (164)
T COG5488 25 SLGPRGFGVLMLALGILSLVVAIFFLVIGA 54 (164)
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455667777777777888888888886664
No 236
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.74 E-value=53 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=16.3
Q ss_pred ccccccccccccCceeeeecCCCCcc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVF 134 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~f 134 (172)
..|++|.+.+...+.-.+. +.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C-~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWIC-PQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEc-CCCCCC
Confidence 4699999998754432222 347877
No 237
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=22.58 E-value=41 Score=29.81 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCcccccccccccccC----ceee-----eecCCCCcccHHHHHHHH
Q 030757 106 GFESECVVCLEGFKQG----QWCR-----KLVGCGHVFHRKCLDTWL 143 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~----~~~~-----~l~~C~H~fh~~Ci~~~~ 143 (172)
+....|+||.|.|+.- +... +-+.=|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 3456899999988641 1111 111247889999987653
No 238
>PF15122 TMEM206: TMEM206 protein family
Probab=22.44 E-value=3.4e+02 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=8.6
Q ss_pred eecCCCCcccHH
Q 030757 126 KLVGCGHVFHRK 137 (172)
Q Consensus 126 ~l~~C~H~fh~~ 137 (172)
.++.|.|.||..
T Consensus 71 ~llsCkhhyyd~ 82 (298)
T PF15122_consen 71 QLLSCKHHYYDD 82 (298)
T ss_pred hhcccccccccc
Confidence 455899888754
No 239
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.40 E-value=32 Score=28.05 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred CcccccccccccccCceeeeecCC--CCcccHHHHHHHHhcCCCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGC--GHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C--~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
....|++|-..-.... +..-..= .+..|..|-..|--....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4568999987532210 1000011 244677788899887788999975
No 240
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.13 E-value=77 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=27.7
Q ss_pred cccccccccccccCceeeeecCCC--CcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCG--HVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~--H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
...|..|-+.- +.+-++ +|+ |+-|.+|..- .|+..+.+.++..+
T Consensus 221 ni~C~~Ctdv~---~~vlvf-~Cns~HvtC~dCFr~---------yc~~Rl~~rqf~~~ 266 (446)
T KOG0006|consen 221 NITCITCTDVR---SPVLVF-QCNSRHVTCLDCFRL---------YCVTRLNDRQFVHD 266 (446)
T ss_pred cceeEEecCCc---cceEEE-ecCCceeehHHhhhh---------HhhhcccccccccC
Confidence 44677787642 223444 898 9988888765 45566666665543
No 241
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.04 E-value=2.7e+02 Score=21.79 Aligned_cols=13 Identities=15% Similarity=-0.115 Sum_probs=5.5
Q ss_pred ccCCCCCCCCCCC
Q 030757 9 HYDDVDVHRRHDS 21 (172)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (172)
.+.+....+..++
T Consensus 145 ~~~~~~~~~~~~~ 157 (233)
T PF10176_consen 145 GGKDDPPGRIEPP 157 (233)
T ss_pred CCCCCCcCccCCC
Confidence 3344444444443
No 242
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.96 E-value=1.5e+02 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 030757 36 LLKVIIMTLITSMFFLLLGLVAFLLLPILFTSLNRHHD 73 (172)
Q Consensus 36 ~~~~ii~~~~~~i~~~~~~l~~~~~l~~~~~~~~~~~~ 73 (172)
-+.+-|++++..++|.+.+++.++.+..+...+++...
T Consensus 238 ~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~~yRgsG~ 275 (313)
T KOG3088|consen 238 NIAVGILMLIGAGLFTLEAVLSIWVLQKVHSYYRGSGA 275 (313)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34445555666666666666666666666665555443
No 243
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=21 Score=25.52 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.3
Q ss_pred CCcccccccccc
Q 030757 106 GFESECVVCLEG 117 (172)
Q Consensus 106 ~~~~~C~ICl~~ 117 (172)
+++..|-||+..
T Consensus 63 ~ddatC~IC~KT 74 (169)
T KOG3799|consen 63 GDDATCGICHKT 74 (169)
T ss_pred CcCcchhhhhhc
Confidence 466789999863
No 244
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.65 E-value=37 Score=23.32 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=26.7
Q ss_pred CcccccccccccccC--ceeeeecCCCCcccHHHHHHHHhcCC--CCccccc
Q 030757 107 FESECVVCLEGFKQG--QWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~--~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~ 154 (172)
++..|++|...|.-- .. ..-..|+|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567899998876421 12 23348999999998644 11122 2777754
No 245
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.55 E-value=1.9e+02 Score=26.90 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.0
Q ss_pred CCCCCCCChh
Q 030757 25 PPKPNPKILP 34 (172)
Q Consensus 25 p~~~~~~~~~ 34 (172)
|+...+....
T Consensus 254 P~~~G~~~~~ 263 (807)
T PF10577_consen 254 PSSSGPVVST 263 (807)
T ss_pred ccccCccccc
Confidence 4444443333
No 246
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=21.54 E-value=1.6e+02 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.467 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 030757 34 PILLKVIIMTLITSMFFLLLG 54 (172)
Q Consensus 34 ~l~~~~ii~~~~~~i~~~~~~ 54 (172)
.....++++.+++.+++..+.
T Consensus 34 ~~t~~Vi~~~~~~~~~i~~vD 54 (64)
T PRK07597 34 RSTIVVLVFVAFFALFFYLVD 54 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 247
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=21.51 E-value=1.6e+02 Score=23.36 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=5.6
Q ss_pred CChhHHHHHHHHH
Q 030757 31 KILPILLKVIIMT 43 (172)
Q Consensus 31 ~~~~l~~~~ii~~ 43 (172)
...+.|.+++|++
T Consensus 198 ~~~g~f~wl~i~~ 210 (268)
T PF09451_consen 198 GGWGFFTWLFIIL 210 (268)
T ss_pred ccccHHHHHHHHH
Confidence 4444444444433
No 248
>PLN02248 cellulose synthase-like protein
Probab=21.44 E-value=75 Score=30.57 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=25.4
Q ss_pred CCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 130 CGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 130 C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
|++..|.+|...-++....||-|+.+....+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 150 CGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred ccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 5677899999998888889999998875433
No 249
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.41 E-value=21 Score=29.07 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=28.7
Q ss_pred CcccccccccccccCceeeeec-CC--CCcccHHHHHHHHhcCCCCcccccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLV-GC--GHVFHRKCLDTWLLKVAACPTCRTP 155 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~-~C--~H~fh~~Ci~~~~~~~~~CP~CR~~ 155 (172)
....|++|-..-.... ++... .= .+..|..|-.+|--....||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999986532111 00000 01 2446777888998777889999763
No 250
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=21.31 E-value=32 Score=33.88 Aligned_cols=50 Identities=28% Similarity=0.483 Sum_probs=34.5
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~~~~ 157 (172)
....|.+|.......+.+.-. .|.-.||..|+..-+.... .||-||..-.
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred chhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 345799999876664322222 4566799999998876443 4999988764
No 251
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.21 E-value=4e+02 Score=20.66 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=10.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLITSMFFLLLGLV 56 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~~i~~~~~~l~ 56 (172)
++.-++..+||.+++++.-+++++.+
T Consensus 127 K~amLIClIIIAVLfLICT~LfLSTV 152 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFLSTV 152 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333434444444444444444433
No 252
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=20.97 E-value=4.2e+02 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=11.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHH
Q 030757 24 LPPKPNPKILPILLKVIIMTLITSM 48 (172)
Q Consensus 24 ~p~~~~~~~~~l~~~~ii~~~~~~i 48 (172)
.||....---..+--+++.+++-++
T Consensus 270 ~Pp~~~~p~R~y~~d~~vtl~iPl~ 294 (386)
T PF05510_consen 270 NPPKESVPGRDYFPDFLVTLAIPLI 294 (386)
T ss_pred CCCcccccccccHHHHHHHHHHHHH
Confidence 3444444445555555444444433
No 253
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=20.95 E-value=1.2e+02 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHH
Q 030757 29 NPKILPILLKVIIMTLITSMFFLLLGL 55 (172)
Q Consensus 29 ~~~~~~l~~~~ii~~~~~~i~~~~~~l 55 (172)
.+...++.-.++.++++++++.+++|+
T Consensus 251 ~sssssi~nkLi~vl~if~aI~iflGI 277 (280)
T PF06022_consen 251 TSSSSSIANKLIPVLSIFGAIPIFLGI 277 (280)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhhe
Confidence 456666777777777777777777665
No 254
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.94 E-value=2.2e+02 Score=20.65 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=10.0
Q ss_pred CCCcccccccccccc
Q 030757 105 PGFESECVVCLEGFK 119 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~ 119 (172)
.+++...++++-+-.
T Consensus 94 mGg~LSFslAlLD~~ 108 (151)
T PF14584_consen 94 MGGDLSFSLALLDDN 108 (151)
T ss_pred ccccceeeeEEEeCC
Confidence 356778888876543
No 255
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.91 E-value=67 Score=19.68 Aligned_cols=11 Identities=45% Similarity=1.195 Sum_probs=8.0
Q ss_pred CCCcccccCCc
Q 030757 147 AACPTCRTPTT 157 (172)
Q Consensus 147 ~~CP~CR~~~~ 157 (172)
..||+|++.+.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 34888888765
No 256
>PF14979 TMEM52: Transmembrane 52
Probab=20.86 E-value=2.2e+02 Score=20.68 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=12.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030757 31 KILPILLKVIIMTLITSMFFLLLGLVAFLL 60 (172)
Q Consensus 31 ~~~~l~~~~ii~~~~~~i~~~~~~l~~~~~ 60 (172)
+...+.+.. ++++.++++++.|+.+..+
T Consensus 15 ~W~~LWyIw--Lill~~~llLLCG~ta~C~ 42 (154)
T PF14979_consen 15 RWSSLWYIW--LILLIGFLLLLCGLTASCV 42 (154)
T ss_pred ceehhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444443333 3333334445555544443
No 257
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.32 E-value=2.1e+02 Score=21.76 Aligned_cols=16 Identities=6% Similarity=0.274 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 030757 41 IMTLITSMFFLLLGLV 56 (172)
Q Consensus 41 i~~~~~~i~~~~~~l~ 56 (172)
.++++++.+|+++|.+
T Consensus 10 ~vLLliG~~f~ligaI 25 (197)
T PRK12585 10 SIMILIGGLLSILAAI 25 (197)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 258
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.23 E-value=32 Score=19.98 Aligned_cols=8 Identities=38% Similarity=1.265 Sum_probs=5.3
Q ss_pred CcccccCC
Q 030757 149 CPTCRTPT 156 (172)
Q Consensus 149 CP~CR~~~ 156 (172)
||+|...+
T Consensus 34 CPiC~~~~ 41 (54)
T PF05605_consen 34 CPICSSRV 41 (54)
T ss_pred CCCchhhh
Confidence 88886543
No 259
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=20.12 E-value=1.3e+02 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=14.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHH
Q 030757 26 PKPNPKILPILLKVIIMTLITSM 48 (172)
Q Consensus 26 ~~~~~~~~~l~~~~ii~~~~~~i 48 (172)
.+-||-.|.+++|+.+++.+.++
T Consensus 276 ~sdYpviFni~Lw~mvil~lali 298 (326)
T KOG4737|consen 276 SSDYPVIFNIFLWLMVILVLALI 298 (326)
T ss_pred cCCccHHHHHHHHHHHHHHHHHH
Confidence 34577777777777666554443
Done!