Query 030757
Match_columns 172
No_of_seqs 188 out of 2196
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.4E-17 1.2E-21 108.6 7.5 80 77-158 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.9E-17 1.3E-21 104.4 2.8 68 89-159 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 8.8E-16 3E-20 92.1 3.7 52 106-157 3-54 (55)
4 2ect_A Ring finger protein 126 99.6 1.3E-15 4.4E-20 97.9 4.7 58 106-164 13-70 (78)
5 2kiz_A E3 ubiquitin-protein li 99.6 2.4E-15 8.2E-20 94.4 5.7 52 106-158 12-63 (69)
6 2ep4_A Ring finger protein 24; 99.6 3.1E-15 1.1E-19 95.1 5.4 52 106-158 13-64 (74)
7 3ng2_A RNF4, snurf, ring finge 99.6 2.8E-15 9.5E-20 94.4 4.3 60 106-165 8-70 (71)
8 2ecl_A Ring-box protein 2; RNF 99.5 1.9E-15 6.4E-20 98.0 3.0 55 107-161 14-79 (81)
9 2ecm_A Ring finger and CHY zin 99.5 3.6E-15 1.2E-19 89.3 3.9 51 107-157 4-54 (55)
10 2xeu_A Ring finger protein 4; 99.5 9.2E-15 3.2E-19 90.0 4.2 59 107-165 2-63 (64)
11 2ea6_A Ring finger protein 4; 99.5 2.3E-14 7.9E-19 89.5 4.4 53 106-158 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.5 2.1E-14 7.1E-19 97.6 4.2 53 107-159 36-102 (106)
13 1v87_A Deltex protein 2; ring- 99.5 4.5E-14 1.5E-18 97.0 5.1 53 107-159 24-95 (114)
14 2d8t_A Dactylidin, ring finger 99.4 3.1E-14 1.1E-18 89.8 2.9 53 106-162 13-65 (71)
15 2djb_A Polycomb group ring fin 99.4 1.2E-13 4.2E-18 87.3 5.7 56 106-164 13-68 (72)
16 2ct2_A Tripartite motif protei 99.4 1.6E-13 5.6E-18 89.7 5.9 56 106-161 13-71 (88)
17 1g25_A CDK-activating kinase a 99.4 1.2E-13 3.9E-18 85.6 4.8 59 108-166 3-63 (65)
18 2ecy_A TNF receptor-associated 99.4 2.9E-13 9.8E-18 84.1 5.5 52 106-161 13-65 (66)
19 3lrq_A E3 ubiquitin-protein li 99.4 1.3E-13 4.3E-18 92.8 3.5 57 107-167 21-79 (100)
20 2csy_A Zinc finger protein 183 99.4 4E-13 1.4E-17 86.7 5.7 48 106-157 13-60 (81)
21 2ysl_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 84.5 5.7 52 106-161 18-72 (73)
22 4a0k_B E3 ubiquitin-protein li 99.4 3.1E-14 1.1E-18 98.2 0.2 54 107-160 47-114 (117)
23 1t1h_A Gspef-atpub14, armadill 99.4 4.8E-13 1.6E-17 85.7 5.4 56 106-165 6-62 (78)
24 1chc_A Equine herpes virus-1 r 99.4 2.1E-13 7.2E-18 85.1 3.5 49 107-158 4-52 (68)
25 2egp_A Tripartite motif-contai 99.4 2.1E-13 7.3E-18 87.4 3.3 57 106-166 10-73 (79)
26 2ecw_A Tripartite motif-contai 99.4 7E-13 2.4E-17 85.9 5.8 57 106-166 17-79 (85)
27 2ecn_A Ring finger protein 141 99.4 1.5E-13 5.3E-18 86.2 2.3 50 106-160 13-62 (70)
28 2d8s_A Cellular modulator of i 99.4 4E-13 1.4E-17 86.7 4.2 53 106-160 13-72 (80)
29 2ecv_A Tripartite motif-contai 99.4 8.1E-13 2.8E-17 85.6 5.3 57 106-166 17-79 (85)
30 2yur_A Retinoblastoma-binding 99.4 7.5E-13 2.6E-17 84.1 4.9 49 106-158 13-64 (74)
31 4ayc_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 95.0 3.5 49 107-159 52-100 (138)
32 2y43_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 88.7 3.6 56 107-165 21-76 (99)
33 4ap4_A E3 ubiquitin ligase RNF 99.3 1.2E-12 4.2E-17 91.5 3.9 58 107-164 6-66 (133)
34 2ct0_A Non-SMC element 1 homol 99.3 4.3E-12 1.5E-16 80.4 5.3 51 105-158 12-64 (74)
35 3ztg_A E3 ubiquitin-protein li 99.3 5E-12 1.7E-16 83.4 5.4 56 105-164 10-69 (92)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 1.7E-12 5.7E-17 90.9 3.0 59 106-164 70-131 (133)
37 3fl2_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 88.3 4.5 54 107-164 51-106 (124)
38 2ckl_A Polycomb group ring fin 99.2 5.4E-12 1.8E-16 85.8 4.7 50 107-159 14-63 (108)
39 2ysj_A Tripartite motif-contai 99.2 9.4E-12 3.2E-16 76.4 5.2 43 106-152 18-63 (63)
40 1jm7_A BRCA1, breast cancer ty 99.2 4.1E-12 1.4E-16 86.6 3.7 54 108-165 21-77 (112)
41 3hct_A TNF receptor-associated 99.2 7.3E-12 2.5E-16 86.5 4.8 57 104-164 14-71 (118)
42 2ecj_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 74.6 4.4 43 106-152 13-58 (58)
43 2ckl_B Ubiquitin ligase protei 99.2 2.2E-11 7.5E-16 88.8 5.6 76 80-158 21-102 (165)
44 1z6u_A NP95-like ring finger p 99.2 1.6E-11 5.6E-16 88.3 4.5 54 107-164 77-132 (150)
45 2kr4_A Ubiquitin conjugation f 99.2 3.4E-11 1.2E-15 78.5 5.4 55 107-165 13-67 (85)
46 1e4u_A Transcriptional repress 99.2 3.5E-11 1.2E-15 77.2 5.3 57 106-162 9-66 (78)
47 1rmd_A RAG1; V(D)J recombinati 99.2 9.3E-12 3.2E-16 85.6 2.7 53 107-163 22-75 (116)
48 2kre_A Ubiquitin conjugation f 99.1 6E-11 2.1E-15 79.6 5.2 55 107-165 28-82 (100)
49 2vje_A E3 ubiquitin-protein li 99.1 2.9E-11 1E-15 74.6 3.3 47 107-157 7-56 (64)
50 1wgm_A Ubiquitin conjugation f 99.1 9.2E-11 3.1E-15 78.5 5.8 55 107-165 21-76 (98)
51 2vje_B MDM4 protein; proto-onc 99.1 3.9E-11 1.3E-15 73.8 3.2 50 106-157 5-55 (63)
52 3l11_A E3 ubiquitin-protein li 99.1 1.8E-11 6.1E-16 84.1 1.1 49 106-158 13-62 (115)
53 1bor_A Transcription factor PM 99.0 4.7E-11 1.6E-15 71.7 1.5 47 106-159 4-50 (56)
54 1jm7_B BARD1, BRCA1-associated 99.0 4E-11 1.4E-15 82.6 1.1 52 107-164 21-73 (117)
55 2y1n_A E3 ubiquitin-protein li 99.0 1.6E-10 5.5E-15 94.3 4.7 50 108-161 332-382 (389)
56 3knv_A TNF receptor-associated 99.0 1.5E-10 5E-15 82.5 3.1 49 106-158 29-78 (141)
57 4ic3_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 73.7 1.6 44 107-158 23-67 (74)
58 3hcs_A TNF receptor-associated 99.0 3.7E-10 1.3E-14 82.5 4.2 57 104-164 14-71 (170)
59 2c2l_A CHIP, carboxy terminus 98.9 6.2E-10 2.1E-14 86.9 4.6 55 106-164 206-261 (281)
60 2yu4_A E3 SUMO-protein ligase 98.9 8.6E-10 3E-14 73.1 3.4 54 107-164 6-69 (94)
61 2ea5_A Cell growth regulator w 98.9 2E-09 6.8E-14 67.1 3.9 45 106-158 13-58 (68)
62 2f42_A STIP1 homology and U-bo 98.8 2.3E-09 7.7E-14 79.0 4.3 56 106-165 104-160 (179)
63 3k1l_B Fancl; UBC, ring, RWD, 98.8 7.4E-10 2.5E-14 88.6 1.4 52 106-157 306-372 (381)
64 2ecg_A Baculoviral IAP repeat- 98.8 1.4E-09 4.7E-14 69.0 2.3 44 107-158 24-68 (75)
65 2yho_A E3 ubiquitin-protein li 98.7 2.6E-09 8.9E-14 68.5 1.2 43 108-158 18-61 (79)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.5E-08 5.2E-13 61.5 4.1 49 106-158 4-59 (60)
67 2bay_A PRE-mRNA splicing facto 98.7 9.3E-09 3.2E-13 62.7 2.9 55 108-166 3-58 (61)
68 1wim_A KIAA0161 protein; ring 98.7 7.1E-09 2.4E-13 68.5 2.0 54 107-161 4-69 (94)
69 3htk_C E3 SUMO-protein ligase 98.6 4.8E-08 1.6E-12 75.6 4.5 56 107-165 180-239 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.2E-08 7.5E-13 80.9 0.9 44 107-158 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 60.1 3.9 46 110-158 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 5.5E-06 1.9E-10 63.6 4.2 50 107-159 179-230 (238)
73 2ko5_A Ring finger protein Z; 95.9 0.0031 1.1E-07 40.9 1.7 47 106-158 26-73 (99)
74 2lri_C Autoimmune regulator; Z 94.5 0.037 1.3E-06 33.6 3.5 48 106-157 10-61 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.025 8.6E-07 36.9 2.6 34 108-142 3-36 (101)
76 1wil_A KIAA1045 protein; ring 93.0 0.15 5E-06 32.4 4.2 36 105-142 12-47 (89)
77 2k16_A Transcription initiatio 90.1 0.091 3.1E-06 32.4 1.0 51 106-157 16-70 (75)
78 2l5u_A Chromodomain-helicase-D 89.7 0.23 7.7E-06 29.4 2.5 45 106-154 9-57 (61)
79 1wep_A PHF8; structural genomi 89.5 0.48 1.6E-05 29.4 4.1 56 107-163 11-71 (79)
80 1we9_A PHD finger family prote 89.4 0.075 2.6E-06 31.7 0.2 50 106-155 4-58 (64)
81 3m62_A Ubiquitin conjugation f 88.6 0.47 1.6E-05 42.9 4.7 55 107-165 890-945 (968)
82 2l43_A N-teminal domain from h 88.1 0.17 5.9E-06 32.3 1.3 56 106-161 23-81 (88)
83 1f62_A Transcription factor WS 88.0 0.22 7.4E-06 28.2 1.5 44 110-154 2-49 (51)
84 2ku3_A Bromodomain-containing 85.7 0.31 1E-05 29.9 1.4 49 106-154 14-65 (71)
85 3lqh_A Histone-lysine N-methyl 85.6 0.2 6.8E-06 36.6 0.5 50 108-157 2-65 (183)
86 3u5n_A E3 ubiquitin-protein li 84.8 0.17 5.9E-06 37.4 -0.1 48 106-157 5-56 (207)
87 1mm2_A MI2-beta; PHD, zinc fin 84.7 0.25 8.6E-06 29.2 0.6 47 106-156 7-57 (61)
88 2yql_A PHD finger protein 21A; 84.7 0.11 3.7E-06 30.2 -1.0 45 106-154 7-55 (56)
89 2lbm_A Transcriptional regulat 83.2 1.9 6.5E-05 30.0 4.7 47 105-155 60-117 (142)
90 3o36_A Transcription intermedi 82.4 0.33 1.1E-05 35.1 0.6 47 107-157 3-53 (184)
91 2vpb_A Hpygo1, pygopus homolog 82.4 1.1 3.6E-05 26.9 2.7 34 107-140 7-41 (65)
92 1fp0_A KAP-1 corepressor; PHD 81.6 0.58 2E-05 29.9 1.4 47 105-155 22-72 (88)
93 1weo_A Cellulose synthase, cat 81.5 3.2 0.00011 26.4 4.8 51 107-157 15-69 (93)
94 3i2d_A E3 SUMO-protein ligase 81.5 1.2 4E-05 36.0 3.5 54 108-164 249-306 (371)
95 4fo9_A E3 SUMO-protein ligase 80.8 1.3 4.4E-05 35.7 3.5 54 108-164 215-272 (360)
96 2e6r_A Jumonji/ARID domain-con 80.1 0.19 6.4E-06 32.4 -1.3 49 106-155 14-66 (92)
97 2lv9_A Histone-lysine N-methyl 80.0 0.64 2.2E-05 30.2 1.3 47 107-155 27-76 (98)
98 2ysm_A Myeloid/lymphoid or mix 79.3 0.47 1.6E-05 31.4 0.4 38 106-144 5-42 (111)
99 1xwh_A Autoimmune regulator; P 78.9 0.33 1.1E-05 29.2 -0.4 47 106-156 6-56 (66)
100 3v43_A Histone acetyltransfera 77.9 0.48 1.7E-05 31.5 0.2 45 110-154 63-111 (112)
101 1wem_A Death associated transc 76.6 1.2 4.1E-05 27.3 1.7 48 108-157 16-72 (76)
102 2puy_A PHD finger protein 21A; 76.5 0.16 5.6E-06 29.9 -2.2 46 107-156 4-53 (60)
103 3ql9_A Transcriptional regulat 76.1 4.2 0.00014 27.8 4.5 47 105-155 54-111 (129)
104 1wen_A Inhibitor of growth fam 74.9 2.5 8.5E-05 25.7 2.9 46 107-157 15-67 (71)
105 2kgg_A Histone demethylase jar 74.1 0.8 2.7E-05 26.0 0.4 44 110-153 4-52 (52)
106 1weu_A Inhibitor of growth fam 73.5 2.4 8.1E-05 27.2 2.6 46 107-157 35-87 (91)
107 2ro1_A Transcription intermedi 73.4 0.6 2.1E-05 34.1 -0.3 45 108-156 2-50 (189)
108 2ri7_A Nucleosome-remodeling f 73.0 0.9 3.1E-05 32.4 0.5 48 107-155 7-59 (174)
109 2cs3_A Protein C14ORF4, MY039 69.8 4.7 0.00016 25.2 3.2 36 106-145 13-52 (93)
110 3v43_A Histone acetyltransfera 69.1 7.7 0.00026 25.5 4.5 34 107-140 4-42 (112)
111 3shb_A E3 ubiquitin-protein li 68.1 0.69 2.3E-05 28.8 -0.9 44 110-154 28-76 (77)
112 3o70_A PHD finger protein 13; 67.1 0.98 3.3E-05 27.3 -0.3 46 107-154 18-66 (68)
113 2cu8_A Cysteine-rich protein 2 66.2 3.4 0.00011 24.8 2.1 42 108-160 9-50 (76)
114 2xb1_A Pygopus homolog 2, B-ce 65.0 2.5 8.6E-05 27.7 1.4 51 108-158 3-64 (105)
115 1wee_A PHD finger family prote 64.6 1.2 4.1E-05 27.0 -0.3 49 107-156 15-67 (72)
116 2co8_A NEDD9 interacting prote 63.8 7.1 0.00024 23.8 3.3 44 107-161 14-57 (82)
117 2yt5_A Metal-response element- 63.6 3.3 0.00011 24.4 1.6 52 106-157 4-63 (66)
118 3c6w_A P28ING5, inhibitor of g 62.7 1.8 6.2E-05 25.3 0.3 43 107-154 8-57 (59)
119 1zbd_B Rabphilin-3A; G protein 62.0 2 7E-05 29.5 0.5 35 106-140 53-88 (134)
120 4gne_A Histone-lysine N-methyl 62.0 7.4 0.00025 25.6 3.2 47 105-157 12-64 (107)
121 2e6s_A E3 ubiquitin-protein li 62.0 1.4 4.7E-05 27.3 -0.3 46 108-154 26-76 (77)
122 1z60_A TFIIH basal transcripti 61.1 5.3 0.00018 23.4 2.1 42 109-152 16-58 (59)
123 2vnf_A ING 4, P29ING4, inhibit 60.9 1.9 6.5E-05 25.2 0.2 43 107-154 9-58 (60)
124 1iml_A CRIP, cysteine rich int 60.5 4.1 0.00014 24.4 1.7 11 109-119 28-38 (76)
125 3asl_A E3 ubiquitin-protein li 59.7 1.7 5.7E-05 26.3 -0.2 44 110-154 20-68 (70)
126 3kqi_A GRC5, PHD finger protei 59.6 3.1 0.00011 25.3 1.0 54 111-164 12-70 (75)
127 1wfk_A Zinc finger, FYVE domai 58.8 7.1 0.00024 24.6 2.6 36 106-141 7-42 (88)
128 2d8y_A Eplin protein; LIM doma 58.6 14 0.00047 22.9 4.0 42 107-159 14-55 (91)
129 2yw8_A RUN and FYVE domain-con 57.8 5.9 0.0002 24.5 2.1 36 107-142 18-53 (82)
130 1wyh_A SLIM 2, skeletal muscle 57.6 7.3 0.00025 22.8 2.4 42 109-160 6-47 (72)
131 1z2q_A LM5-1; membrane protein 57.5 6.3 0.00022 24.5 2.2 36 107-142 20-55 (84)
132 1nyp_A Pinch protein; LIM doma 56.7 7.5 0.00026 22.4 2.4 41 108-160 5-45 (66)
133 1x4k_A Skeletal muscle LIM-pro 56.6 7.4 0.00025 22.8 2.4 42 109-160 6-47 (72)
134 3t7l_A Zinc finger FYVE domain 56.3 5.4 0.00019 25.2 1.8 36 107-142 19-54 (90)
135 2knc_B Integrin beta-3; transm 55.9 26 0.00089 21.6 4.8 7 30-36 8-14 (79)
136 1g47_A Pinch protein; LIM doma 55.7 9.3 0.00032 22.7 2.7 44 107-160 10-53 (77)
137 2cor_A Pinch protein; LIM doma 55.3 14 0.00048 22.3 3.5 42 107-160 14-55 (79)
138 2dj7_A Actin-binding LIM prote 54.5 9.7 0.00033 23.1 2.7 41 107-158 14-54 (80)
139 3ask_A E3 ubiquitin-protein li 54.2 2.5 8.6E-05 31.7 -0.1 46 109-155 175-225 (226)
140 1x4l_A Skeletal muscle LIM-pro 54.1 9.1 0.00031 22.5 2.5 44 108-161 5-50 (72)
141 1joc_A EEA1, early endosomal a 53.5 6.1 0.00021 26.6 1.8 36 107-142 68-103 (125)
142 1x63_A Skeletal muscle LIM-pro 53.3 11 0.00036 22.8 2.8 42 109-160 16-57 (82)
143 1vfy_A Phosphatidylinositol-3- 53.0 7.6 0.00026 23.4 2.0 33 109-141 12-44 (73)
144 1y02_A CARP2, FYVE-ring finger 51.9 1.5 5.3E-05 29.6 -1.5 48 107-154 18-65 (120)
145 1x61_A Thyroid receptor intera 51.5 10 0.00035 22.2 2.4 41 109-159 6-46 (72)
146 1x68_A FHL5 protein; four-and- 51.1 12 0.0004 22.3 2.6 42 109-160 6-49 (76)
147 1a7i_A QCRP2 (LIM1); LIM domai 51.0 3.7 0.00013 24.9 0.3 42 108-160 7-48 (81)
148 1x4u_A Zinc finger, FYVE domai 50.9 7.7 0.00026 24.1 1.8 35 107-141 13-47 (84)
149 2gmg_A Hypothetical protein PF 50.2 2.9 9.9E-05 27.5 -0.3 23 129-156 72-94 (105)
150 1x64_A Alpha-actinin-2 associa 49.9 17 0.00058 22.3 3.4 42 107-160 24-65 (89)
151 2kwj_A Zinc finger protein DPF 49.3 0.93 3.2E-05 30.2 -2.9 46 110-156 60-109 (114)
152 2d8z_A Four and A half LIM dom 47.1 12 0.00042 21.7 2.3 40 109-160 6-45 (70)
153 1zfo_A LAsp-1; LIM domain, zin 46.9 8.6 0.0003 19.0 1.3 27 109-138 4-30 (31)
154 1wew_A DNA-binding family prot 46.9 9.5 0.00032 23.3 1.7 49 107-157 15-74 (78)
155 2dar_A PDZ and LIM domain prot 46.8 12 0.00041 23.1 2.3 43 107-161 24-66 (90)
156 3zyq_A Hepatocyte growth facto 46.3 8 0.00027 28.8 1.5 36 107-142 163-198 (226)
157 3f6q_B LIM and senescent cell 46.3 15 0.0005 21.3 2.5 42 108-159 11-52 (72)
158 1dvp_A HRS, hepatocyte growth 45.8 7.6 0.00026 28.6 1.4 35 107-141 160-194 (220)
159 2g6q_A Inhibitor of growth pro 45.8 2.7 9.1E-05 24.8 -0.9 45 107-154 10-59 (62)
160 3a1b_A DNA (cytosine-5)-methyl 44.4 25 0.00087 24.7 3.8 46 106-155 77-134 (159)
161 3mjh_B Early endosome antigen 44.3 6.7 0.00023 20.3 0.6 15 108-122 5-19 (34)
162 2zet_C Melanophilin; complex, 44.3 13 0.00045 26.0 2.3 47 106-154 66-116 (153)
163 2d8x_A Protein pinch; LIM doma 44.0 12 0.00041 21.8 1.9 41 108-160 5-45 (70)
164 3mpx_A FYVE, rhogef and PH dom 41.8 5.5 0.00019 32.2 0.0 50 107-156 374-430 (434)
165 2ehe_A Four and A half LIM dom 40.6 18 0.00062 21.7 2.4 42 109-160 16-57 (82)
166 3o7a_A PHD finger protein 13 v 40.0 3.8 0.00013 23.0 -0.9 41 113-154 8-51 (52)
167 1v6g_A Actin binding LIM prote 38.4 17 0.00058 21.8 1.9 39 109-159 16-54 (81)
168 1wig_A KIAA1808 protein; LIM d 38.0 22 0.00075 21.0 2.4 37 109-157 6-42 (73)
169 1x62_A C-terminal LIM domain p 37.4 22 0.00076 21.2 2.4 40 107-158 14-53 (79)
170 1x6a_A LIMK-2, LIM domain kina 36.8 21 0.00073 21.3 2.2 38 109-158 16-53 (81)
171 2egq_A FHL1 protein; LIM domai 36.5 23 0.00078 20.9 2.3 42 109-160 16-60 (77)
172 2l4z_A DNA endonuclease RBBP8, 36.1 14 0.00049 24.5 1.4 39 108-157 61-99 (123)
173 2dlo_A Thyroid receptor-intera 35.4 15 0.00051 22.1 1.3 42 108-161 15-56 (81)
174 2iyb_E Testin, TESS, TES; LIM 34.7 23 0.0008 20.2 2.1 42 109-160 3-46 (65)
175 2cuq_A Four and A half LIM dom 33.8 23 0.00078 21.1 2.0 39 109-159 16-54 (80)
176 2l3k_A Rhombotin-2, linker, LI 33.5 19 0.00065 23.7 1.7 34 108-143 36-69 (123)
177 2cur_A Skeletal muscle LIM-pro 32.8 14 0.0005 21.3 0.9 39 109-159 6-44 (69)
178 2cup_A Skeletal muscle LIM-pro 32.5 42 0.0014 20.8 3.2 47 108-159 33-79 (101)
179 1m3v_A FLIN4, fusion of the LI 32.5 42 0.0015 21.9 3.3 53 108-162 32-85 (122)
180 1j2o_A FLIN2, fusion of rhombo 31.0 36 0.0012 22.0 2.7 36 107-144 29-65 (114)
181 1wev_A Riken cDNA 1110020M19; 30.8 16 0.00055 22.9 0.9 51 107-157 15-74 (88)
182 1wd2_A Ariadne-1 protein homol 30.5 5.2 0.00018 23.4 -1.4 36 109-144 7-46 (60)
183 3kv5_D JMJC domain-containing 29.7 11 0.00039 31.4 0.1 50 108-158 37-91 (488)
184 2a20_A Regulating synaptic mem 29.2 3.4 0.00012 24.2 -2.3 37 105-142 6-43 (62)
185 1x3h_A Leupaxin; paxillin fami 29.0 23 0.00078 21.1 1.4 39 109-159 16-54 (80)
186 2pv0_B DNA (cytosine-5)-methyl 28.7 47 0.0016 26.9 3.5 46 106-155 91-148 (386)
187 2k3u_B C5AR(P7-28S) peptide, c 28.4 41 0.0014 15.5 1.8 17 4-20 3-19 (26)
188 2l8s_A Integrin alpha-1; trans 28.2 87 0.003 17.8 4.7 12 38-49 10-21 (54)
189 2o35_A Hypothetical protein DU 27.6 26 0.00088 22.7 1.4 11 134-144 43-53 (105)
190 3fyb_A Protein of unknown func 27.5 26 0.00089 22.7 1.4 11 134-144 42-52 (104)
191 1b8t_A Protein (CRP1); LIM dom 26.9 30 0.001 24.6 1.9 41 108-159 115-155 (192)
192 2lkw_A Membrane fusion protein 26.4 36 0.0012 15.7 1.4 12 16-27 5-16 (26)
193 2xqn_T Testin, TESS; metal-bin 26.3 37 0.0013 22.1 2.2 48 107-159 29-76 (126)
194 2jvx_A NF-kappa-B essential mo 25.9 18 0.00063 17.7 0.4 10 148-157 5-14 (28)
195 1rut_X Flinc4, fusion protein 25.9 45 0.0015 23.6 2.7 37 110-156 71-107 (188)
196 2rgt_A Fusion of LIM/homeobox 25.7 48 0.0016 22.9 2.8 48 107-160 32-79 (169)
197 2jmi_A Protein YNG1, ING1 homo 25.3 8.8 0.0003 24.4 -1.1 45 107-154 25-75 (90)
198 2jmo_A Parkin; IBR, E3 ligase, 25.0 4.6 0.00016 24.9 -2.5 20 129-150 55-74 (80)
199 2pk7_A Uncharacterized protein 24.9 17 0.00058 21.8 0.2 17 143-159 5-21 (69)
200 3kv4_A PHD finger protein 8; e 24.7 13 0.00044 30.7 -0.5 53 109-161 5-62 (447)
201 2d8v_A Zinc finger FYVE domain 24.4 35 0.0012 20.4 1.5 32 106-142 6-38 (67)
202 2knc_A Integrin alpha-IIB; tra 23.5 1.1E+02 0.0037 17.3 5.8 13 37-49 12-24 (54)
203 1loi_A Cyclic 3',5'-AMP specif 23.0 4 0.00014 19.0 -2.2 11 133-143 6-16 (26)
204 1x4i_A Inhibitor of growth pro 21.4 30 0.001 20.6 0.8 26 132-157 30-57 (70)
205 2xjy_A Rhombotin-2; oncoprotei 20.9 70 0.0024 20.8 2.7 26 132-157 52-77 (131)
206 2jrp_A Putative cytoplasmic pr 20.3 5.1 0.00017 25.1 -2.9 12 109-120 3-14 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=108.59 Aligned_cols=80 Identities=25% Similarity=0.582 Sum_probs=67.0
Q ss_pred CCCCCCCCCHHHHhccCccccccCCCCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCC
Q 030757 77 GACHSDGLSPKELKSLSQFKISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPT 156 (172)
Q Consensus 77 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~ 156 (172)
......+++++.++.++...+..... ..+.+..|+||++++..++.+..+ +|+|.||..|+..|+..+.+||+||..+
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 34466789999999999888765432 234667899999999988877777 8999999999999999989999999988
Q ss_pred cc
Q 030757 157 TF 158 (172)
Q Consensus 157 ~~ 158 (172)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-17 Score=104.38 Aligned_cols=68 Identities=34% Similarity=0.738 Sum_probs=54.8
Q ss_pred HhccCccccccCCCCCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 89 LKSLSQFKISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
++.++...+.... ...++..|+||++++..++.+..+ +|+|.||..|+.+|+..+.+||+||+.+...
T Consensus 6 i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456666665432 234567899999999998877777 8999999999999999989999999998754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=8.8e-16 Score=92.10 Aligned_cols=52 Identities=40% Similarity=0.875 Sum_probs=45.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+++.+|+||++++..++.+..++.|+|.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3457899999999988877777459999999999999999899999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1.3e-15 Score=97.86 Aligned_cols=58 Identities=38% Similarity=0.806 Sum_probs=50.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
.....|+||++.+..++.+..+ +|+|.||..|+.+|+..+..||+||..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4567899999999888766666 899999999999999988899999999998776654
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=94.36 Aligned_cols=52 Identities=37% Similarity=0.911 Sum_probs=45.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
+....|+||++.+..++.+..+ +|+|.||..|+.+|+..+.+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4567899999999877666666 899999999999999998899999999874
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=95.11 Aligned_cols=52 Identities=40% Similarity=0.805 Sum_probs=46.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
..+..|+||++.+..++.+..+ +|+|.||..|+.+|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567899999999988877766 899999999999999988899999999874
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=2.8e-15 Score=94.43 Aligned_cols=60 Identities=28% Similarity=0.619 Sum_probs=49.3
Q ss_pred CCcccccccccccccC---ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 106 GFESECVVCLEGFKQG---QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
+++..|+||++.+..+ ....+.++|||.||..|+.+|+..+..||+||..+..+++...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4567899999998763 23334559999999999999999989999999999988776643
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=98.03 Aligned_cols=55 Identities=22% Similarity=0.554 Sum_probs=43.9
Q ss_pred Cccccccccccccc-----------CceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 107 FESECVVCLEGFKQ-----------GQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
+++.|+||++++.. ++.++.+++|+|.||.+||++|+..+.+||+||+++...++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 34567777777753 45566676799999999999999999999999999876543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=3.6e-15 Score=89.35 Aligned_cols=51 Identities=31% Similarity=0.776 Sum_probs=43.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
++..|+||++.+..++...+.++|+|.||..|+.+|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999776555556699999999999999998899999999875
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=90.04 Aligned_cols=59 Identities=29% Similarity=0.633 Sum_probs=47.9
Q ss_pred CcccccccccccccC---ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQG---QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
++..|+||++.+..+ ....+.++|||.||..|+.+|+..+..||+||..+..+++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 356899999998763 12234459999999999999999988999999999988776543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=89.53 Aligned_cols=53 Identities=30% Similarity=0.683 Sum_probs=43.5
Q ss_pred CCcccccccccccccC---ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQG---QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
.+...|+||++.+... ....+.++|||.||..|+..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998764 2223455999999999999999998899999998863
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.48 E-value=2.1e-14 Score=97.63 Aligned_cols=53 Identities=23% Similarity=0.537 Sum_probs=43.0
Q ss_pred CcccccccccccccC--------------ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQG--------------QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~--------------~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
+++.|+||++.|... +...++++|+|.||..||.+|+..+.+||+||+++...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 457899999998754 11234459999999999999999999999999987644
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=4.5e-14 Score=96.96 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=41.6
Q ss_pred CcccccccccccccCc--------------eeeeecCCCCcccHHHHHHHHh-----cCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQ--------------WCRKLVGCGHVFHRKCLDTWLL-----KVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~fh~~Ci~~~~~-----~~~~CP~CR~~~~~~ 159 (172)
.+..|+||+++|..+. .+..+++|+|.||..||..|+. .+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999996643 2334569999999999999994 456799999987643
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=89.83 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=44.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
.++..|+||++.+... +.++|+|.||..|+..|+.....||+||..+....+.
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 4567899999998763 4448999999999999999888999999998865543
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=87.29 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=47.0
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
++...|+||++.+.+. ..+++|+|.||..|+..|+..+..||+||..+...++..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 4567899999998874 2334999999999999999988899999999997776654
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=89.68 Aligned_cols=56 Identities=34% Similarity=0.715 Sum_probs=46.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC---CCCcccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV---AACPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~---~~CP~CR~~~~~~~~ 161 (172)
.+...|+||++.+...+...+.++|||.||..|+..|+..+ ..||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 45678999999998876545566999999999999999875 679999999876544
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=1.2e-13 Score=85.64 Aligned_cols=59 Identities=24% Similarity=0.582 Sum_probs=47.8
Q ss_pred ccccccccc-ccccCceeeeecCCCCcccHHHHHHHHhcC-CCCcccccCCccCccccccc
Q 030757 108 ESECVVCLE-GFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-AACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 108 ~~~C~ICl~-~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~CR~~~~~~~~~~~~~ 166 (172)
+..|+||++ .+..+....++++|||.||..|+.+|+... ..||+||..+...++..+.+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecc
Confidence 467999999 777765444556999999999999997654 56999999999888877654
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=84.09 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=42.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh-cCCCCcccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-KVAACPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~CR~~~~~~~~ 161 (172)
.+...|+||++.+..+ +.++|||.||..|+..|+. ....||+||..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4567899999998875 3359999999999999995 55679999999986553
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=92.78 Aligned_cols=57 Identities=25% Similarity=0.714 Sum_probs=48.4
Q ss_pred CcccccccccccccCceeeee-cCCCCcccHHHHHHHHhcC-CCCcccccCCccCcccccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKL-VGCGHVFHRKCLDTWLLKV-AACPTCRTPTTFDRFLRNSFY 167 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~~~~~~-~~CP~CR~~~~~~~~~~~~~~ 167 (172)
+...|+||++.+..+ +. ++|||.||..||..|+... ..||+||..+...++..++++
T Consensus 21 ~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 456899999999863 44 6999999999999999987 589999999998888776554
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4e-13 Score=86.73 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=42.0
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+....|+||++.+..+ +.++|||.||..|+..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999998773 45699999999999999998889999999986
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=84.55 Aligned_cols=52 Identities=27% Similarity=0.573 Sum_probs=42.7
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh---cCCCCcccccCCccCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVAACPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~~CP~CR~~~~~~~~ 161 (172)
.+...|+||++.+... +.++|||.||..|+..|+. ....||+||..+..+++
T Consensus 18 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567899999998863 4459999999999999997 34569999999986654
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.39 E-value=3.1e-14 Score=98.22 Aligned_cols=54 Identities=22% Similarity=0.524 Sum_probs=1.0
Q ss_pred CcccccccccccccC-------------ce-eeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQG-------------QW-CRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~-------------~~-~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
.++.|+||+++|... +. ..+.++|+|.||..||.+|+..+.+||+||+++....
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 457899999998752 21 2333589999999999999999899999999876543
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=4.8e-13 Score=85.69 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=47.1
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCcccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~~~~~ 165 (172)
.+...|+||++.+.++ +.++|||.||..||..|+.. ...||+||..+...++..|.
T Consensus 6 ~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp SSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred cccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 4567899999998874 44599999999999999986 67799999999887776654
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.1e-13 Score=85.05 Aligned_cols=49 Identities=27% Similarity=0.712 Sum_probs=41.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
.+..|+||++.+..+. +.++|||.||..|+..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~---~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYS---MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCE---EETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCc---EecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4568999999987632 455999999999999999988999999999873
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=87.42 Aligned_cols=57 Identities=26% Similarity=0.607 Sum_probs=47.3
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-------CCCCcccccCCccCccccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-------VAACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-------~~~CP~CR~~~~~~~~~~~~~ 166 (172)
.+...|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+...++..|..
T Consensus 10 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 10 QEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred ccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 4567899999998874 34599999999999999986 456999999999887776654
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=7e-13 Score=85.91 Aligned_cols=57 Identities=32% Similarity=0.631 Sum_probs=47.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc------CCCCcccccCCccCccccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK------VAACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~------~~~CP~CR~~~~~~~~~~~~~ 166 (172)
.++..|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+....+..+..
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 3567899999998874 34589999999999999987 556999999999887776643
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=86.21 Aligned_cols=50 Identities=36% Similarity=0.798 Sum_probs=42.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
.+...|+||++.+.. ..+ +|+|.||..|+..|+.....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 356789999999876 334 99999999999999998888999999988543
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=86.73 Aligned_cols=53 Identities=19% Similarity=0.488 Sum_probs=43.2
Q ss_pred CCcccccccccccccCceeeeecCCC-----CcccHHHHHHHHhcC--CCCcccccCCccCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCG-----HVFHRKCLDTWLLKV--AACPTCRTPTTFDR 160 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~~~~~~--~~CP~CR~~~~~~~ 160 (172)
.++..|.||++++..++.+ + +||+ |.||.+||++|+..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-I-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-E-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-E-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999999876654 3 4896 999999999999865 47999999987543
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.1e-13 Score=85.60 Aligned_cols=57 Identities=32% Similarity=0.595 Sum_probs=47.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc------CCCCcccccCCccCccccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK------VAACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~------~~~CP~CR~~~~~~~~~~~~~ 166 (172)
.+...|+||++.+... +.++|||.||..|+..|+.. ...||+||..+...++..+..
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred cCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 3567899999998774 34599999999999999986 667999999999887776654
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=7.5e-13 Score=84.09 Aligned_cols=49 Identities=27% Similarity=0.648 Sum_probs=40.8
Q ss_pred CCcccccccccccccCceeeeecC-CCCcccHHHHHHHHhcC--CCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVG-CGHVFHRKCLDTWLLKV--AACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~~~~~~--~~CP~CR~~~~~ 158 (172)
.+...|+||++.+..+ +.++ |||.||..|+..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4567899999999874 3457 99999999999999865 579999998553
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=4.8e-13 Score=94.95 Aligned_cols=49 Identities=29% Similarity=0.791 Sum_probs=41.9
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
++..|+||++.+..+ +.++|||.||..|+..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 345799999998763 4459999999999999999989999999998643
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.2e-13 Score=88.73 Aligned_cols=56 Identities=25% Similarity=0.500 Sum_probs=46.3
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
+...|+||++.+..+ ..+++|||.||..|+..|+..+..||+||..+...++..|.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCH
Confidence 456899999998873 22348999999999999999888999999999877666553
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=1.2e-12 Score=91.54 Aligned_cols=58 Identities=29% Similarity=0.649 Sum_probs=47.5
Q ss_pred CcccccccccccccC---ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQG---QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
+...|+||++.+..+ ....+.++|||.||..|+.+|+..+.+||+||..+....+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 457899999998764 2222445999999999999999999999999999987776553
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=4.3e-12 Score=80.45 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--CCCcccccCCcc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--AACPTCRTPTTF 158 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~CR~~~~~ 158 (172)
.+....|+||.+.+..++.+. .|+|.||..|+.+|++.+ .+||+||.++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345678999999998876544 899999999999999877 679999998764
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=83.37 Aligned_cols=56 Identities=27% Similarity=0.627 Sum_probs=44.0
Q ss_pred CCCcccccccccccccCceeeeecC-CCCcccHHHHHHHHhcC--CCCcccccCC-ccCccccc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVG-CGHVFHRKCLDTWLLKV--AACPTCRTPT-TFDRFLRN 164 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~~~~~~--~~CP~CR~~~-~~~~~~~~ 164 (172)
..++..|+||++.+..+ +.++ |||.||..|+..|+... ..||+||..+ ....+..+
T Consensus 10 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 69 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69 (92)
T ss_dssp CCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEEC
T ss_pred CCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcC
Confidence 34667899999999874 4458 99999999999999754 4799999997 44455444
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.7e-12 Score=90.85 Aligned_cols=59 Identities=29% Similarity=0.640 Sum_probs=48.2
Q ss_pred CCcccccccccccccC---ceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 106 GFESECVVCLEGFKQG---QWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
++...|+||++.+... ....+.++|||.||..|+++|+..+++||+||..+..+++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 3557899999998763 2223455999999999999999999999999999998877654
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=88.29 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=43.5
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCcc-Cccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTF-DRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~-~~~~~~ 164 (172)
+...|+||++.+..+ +.++|||.||..|+..|+.... .||+||..+.. ..+..|
T Consensus 51 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n 106 (124)
T 3fl2_A 51 ETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN 106 (124)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCC
T ss_pred cCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCC
Confidence 456899999999873 4459999999999999998554 79999999986 444443
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=5.4e-12 Score=85.77 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=42.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
++..|+||++.+..+ ..+.+|||.||..|+..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 457899999998763 22349999999999999999888999999998865
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.4e-12 Score=76.36 Aligned_cols=43 Identities=30% Similarity=0.656 Sum_probs=35.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh---cCCCCccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVAACPTC 152 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~~CP~C 152 (172)
.++..|+||++.+..+ +.++|||.||..|+.+|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999998874 4459999999999999998 34569998
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=4.1e-12 Score=86.64 Aligned_cols=54 Identities=28% Similarity=0.584 Sum_probs=45.0
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC---CCcccccCCccCcccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA---ACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~---~CP~CR~~~~~~~~~~~~ 165 (172)
...|+||++.+..+ +.++|||.||..|+..|+..+. .||+||..+....+..+.
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 45799999998774 3459999999999999998654 799999999987776653
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=7.3e-12 Score=86.50 Aligned_cols=57 Identities=19% Similarity=0.470 Sum_probs=46.6
Q ss_pred CCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCccCccccc
Q 030757 104 QPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 104 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~~~~~~~ 164 (172)
...+...|+||++.+..+ +.++|||.||..|+..|+.... .||+||..+...++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 334667999999998874 4459999999999999998765 89999999987665543
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=74.58 Aligned_cols=43 Identities=37% Similarity=0.967 Sum_probs=35.3
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh---cCCCCccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVAACPTC 152 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~~CP~C 152 (172)
.+...|+||++.+..+ +.++|+|.||..|+.+|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999875 3459999999999999954 45669998
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=2.2e-11 Score=88.75 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=52.8
Q ss_pred CCCCCCHHHHhccCccccccCCC-----CCCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccc
Q 030757 80 HSDGLSPKELKSLSQFKISKRNE-----SQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCR 153 (172)
Q Consensus 80 ~~~~l~~~~~~~l~~~~~~~~~~-----~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR 153 (172)
...++...++.+.+......... ........|+||++.+..+ ..+++|||.||..|+..|+.. ...||+||
T Consensus 21 ~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 21 KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred ccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCC
Confidence 34566666776655433322211 1122456899999998873 233499999999999999987 66799999
Q ss_pred cCCcc
Q 030757 154 TPTTF 158 (172)
Q Consensus 154 ~~~~~ 158 (172)
..+..
T Consensus 98 ~~~~~ 102 (165)
T 2ckl_B 98 KKLVS 102 (165)
T ss_dssp CBCCS
T ss_pred CcCCC
Confidence 99853
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=88.28 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=44.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCccC-ccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTFD-RFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~~-~~~~~ 164 (172)
+...|+||++.+..+ +.++|||.||..|+..|+.... .||+||..+... .+..|
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n 132 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC
Confidence 456899999998874 4459999999999999998665 799999999876 44443
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.17 E-value=3.4e-11 Score=78.47 Aligned_cols=55 Identities=16% Similarity=-0.001 Sum_probs=48.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
....|+||++.+.+ ++.++|||.|+..||..|+....+||.||..+....+..|.
T Consensus 13 ~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp TTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECH
T ss_pred hheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHH
Confidence 56789999999988 45668999999999999999888899999999987777653
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.17 E-value=3.5e-11 Score=77.20 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=42.2
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRFL 162 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~~ 162 (172)
+++..|+||++.+..++....-.+|||.||..|+..++.. ...||.||+.+....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4567899999988654322111249999999999998753 45699999999876554
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=9.3e-12 Score=85.59 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=44.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~~~~~~ 163 (172)
+...|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+...++..
T Consensus 22 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 456899999998773 44599999999999999987 667999999998766543
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.13 E-value=6e-11 Score=79.64 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=48.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
....|+||++.+.++ +.++|||.|+..||..|+....+||.||.++....+..|.
T Consensus 28 ~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp TTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred HhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 567899999999984 5568999999999999999888899999999988877663
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.12 E-value=2.9e-11 Score=74.64 Aligned_cols=47 Identities=30% Similarity=0.608 Sum_probs=39.9
Q ss_pred CcccccccccccccCceeeeec--CCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLV--GCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
++..|+||++...+. +++ ||||. |+..|+..|...+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 556899999986652 333 99999 899999999988888999999986
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.12 E-value=9.2e-11 Score=78.47 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=48.3
Q ss_pred CcccccccccccccCceeeeecCCC-CcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG-HVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
....|+||++.+.+ ++.++|| |.|+..||..|+....+||+||..+....+..|.
T Consensus 21 ~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp TTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred HhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 56789999999998 4566999 9999999999999888899999999988877663
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.10 E-value=3.9e-11 Score=73.83 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=40.4
Q ss_pred CCcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
+....|.||++...+. +....||||. |+..|+..|...+..||+||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3567899999976552 1223499998 999999999988888999999986
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.08 E-value=1.8e-11 Score=84.05 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=41.0
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~ 158 (172)
.++..|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3567899999998874 44499999999999999976 5579999999874
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.7e-11 Score=71.68 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=38.2
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
.+...|+||++.+..+ +.++|||.||..|+..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3557899999999874 45599999999999873 45799999998743
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=4e-11 Score=82.63 Aligned_cols=52 Identities=25% Similarity=0.607 Sum_probs=43.7
Q ss_pred CcccccccccccccCceeeeec-CCCCcccHHHHHHHHhcCCCCcccccCCccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~ 164 (172)
+...|+||++.+..+ +.+ +|||.||..|+..|+. ..||+||..+....+..+
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 356899999999874 444 8999999999999987 779999999987666654
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.03 E-value=1.6e-10 Score=94.33 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=42.1
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHh-cCCCCcccccCCccCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-KVAACPTCRTPTTFDRF 161 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-~~~~CP~CR~~~~~~~~ 161 (172)
...|+||++.+.. .+.++|||.||..|+..|+. ....||+||..+.....
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 3689999998866 35569999999999999998 67789999999886544
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=82.46 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=41.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~ 158 (172)
++...|+||++.+..+ +.++|||.||..||..|+.... .||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4667899999999874 4459999999999999998665 79999998653
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=1.3e-10 Score=73.65 Aligned_cols=44 Identities=32% Similarity=0.719 Sum_probs=37.2
Q ss_pred CcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
++..|+||++.+.+ .+++||||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34679999998776 355599999 999999988 779999999873
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=82.51 Aligned_cols=57 Identities=19% Similarity=0.470 Sum_probs=46.3
Q ss_pred CCCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCccCccccc
Q 030757 104 QPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 104 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~~~~~~~ 164 (172)
...+...|+||++.+..+ +.++|||.||..|+..|+..+. .||+||..+...++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 334678999999998874 4459999999999999997654 89999999987665543
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=6.2e-10 Score=86.85 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=46.7
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC-CCcccccCCccCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA-ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~-~CP~CR~~~~~~~~~~~ 164 (172)
.....|+||++.+.+ ++.++|||.||..||..|+..+. +||+||.++...++..|
T Consensus 206 ~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 356789999999988 45669999999999999998644 49999999998777765
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=8.6e-10 Score=73.07 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=44.1
Q ss_pred CcccccccccccccCceeeeecC-CCCcccHHHHHHHHhcC------CCCcc--cccC-CccCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG-CGHVFHRKCLDTWLLKV------AACPT--CRTP-TTFDRFLRN 164 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~~~~~~------~~CP~--CR~~-~~~~~~~~~ 164 (172)
....|+||++.|.++ +.++ |||.|+..||..|+... ..||+ |+.. +...++..|
T Consensus 6 ~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred cEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 457899999999884 5555 99999999999999753 36999 9877 777777665
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=67.11 Aligned_cols=45 Identities=29% Similarity=0.644 Sum_probs=37.0
Q ss_pred CCcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
++...|.||++.... .+++||+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 356789999998765 466799999 99999984 3679999999874
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.83 E-value=2.3e-09 Score=79.00 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC-CCCcccccCCccCcccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-AACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~CR~~~~~~~~~~~~ 165 (172)
.....|+||++.+.+ ++.++|||.|+..||..|+... .+||.||.++....+..|.
T Consensus 104 p~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 104 PDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred cHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 467899999999988 4566999999999999999864 4699999999988877763
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.82 E-value=7.4e-10 Score=88.58 Aligned_cols=52 Identities=23% Similarity=0.552 Sum_probs=40.7
Q ss_pred CCcccccccccccccCceee----eecCCCCcccHHHHHHHHhcC-----------CCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCR----KLVGCGHVFHRKCLDTWLLKV-----------AACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~----~l~~C~H~fh~~Ci~~~~~~~-----------~~CP~CR~~~~ 157 (172)
+...+|+||++.+..+..++ ..+.|+|.||..|+.+|+... ++||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 46778999999988744332 234799999999999999642 35999999876
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=69.04 Aligned_cols=44 Identities=34% Similarity=0.764 Sum_probs=35.9
Q ss_pred CcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
++..|+||++.+.. .+++||||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34679999998776 355699999 99999964 3679999999874
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.72 E-value=2.6e-09 Score=68.52 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=35.9
Q ss_pred cccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
+..|+||++.... .+++||||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4579999998766 455699999 999999876 489999999874
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.69 E-value=1.5e-08 Score=61.49 Aligned_cols=49 Identities=31% Similarity=0.546 Sum_probs=36.4
Q ss_pred CCcccccccccccccCceeeeecCCC--C---cccHHHHHHHHhc--CCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCG--H---VFHRKCLDTWLLK--VAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~~~~~--~~~CP~CR~~~~~ 158 (172)
++...|.||+++.. +.+ + .||. + .||..|+++|+.. +.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~-~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-F-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-C-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-e-cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35678999999743 222 3 4865 4 8999999999974 4569999988753
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.68 E-value=9.3e-09 Score=62.66 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=47.1
Q ss_pred cccccccccccccCceeeeec-CCCCcccHHHHHHHHhcCCCCcccccCCccCccccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNSF 166 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~~ 166 (172)
...|+||++.+.++ +.. ++||+|...||.+|+..+..||+.+.++..+++..+.+
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 35799999999874 555 89999999999999988888999999999988887643
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=7.1e-09 Score=68.47 Aligned_cols=54 Identities=22% Similarity=0.555 Sum_probs=41.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--------CCCcc--cccC--CccCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--------AACPT--CRTP--TTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--------~~CP~--CR~~--~~~~~~ 161 (172)
...+|+||++++..++.+. +.+|||.||.+|+..++... ..||. |+.. +..+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~-l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEE-ETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccceE-cCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 4568999999987765443 34899999999999998631 25999 9998 665443
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.8e-08 Score=75.60 Aligned_cols=56 Identities=23% Similarity=0.567 Sum_probs=45.5
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC--CCCcc--cccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV--AACPT--CRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~--~~CP~--CR~~~~~~~~~~~~ 165 (172)
....|+||++.|..+. +...|||.|+..||..|+..+ ..||+ ||..+...++..+.
T Consensus 180 ~el~CPIcl~~f~DPV---ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 180 IELTCPITCKPYEAPL---ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp CCSBCTTTSSBCSSEE---EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH
T ss_pred eeeECcCccCcccCCe---eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH
Confidence 4568999999998852 224899999999999999864 35999 99999888877653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=2.2e-08 Score=80.93 Aligned_cols=44 Identities=27% Similarity=0.644 Sum_probs=37.3
Q ss_pred CcccccccccccccCceeeeecCCCCc-ccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHV-FHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
++..|+||++.+.. .+.+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45689999998876 455599999 999999987 679999999873
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.33 E-value=4e-07 Score=60.07 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=36.0
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhc-CCCCcccccCCcc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-VAACPTCRTPTTF 158 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-~~~CP~CR~~~~~ 158 (172)
.|.+|--++..- .++.||+|+||.+|+..|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~iy---gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVY---GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEE---EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEE---eeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 477777665542 345599999999999999864 5779999998874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.97 E-value=5.5e-06 Score=63.60 Aligned_cols=50 Identities=28% Similarity=0.621 Sum_probs=41.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC--CCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~~~~~~ 159 (172)
....|.||.+-...+..+. .|+|.||..|+..|++... .||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4678999999988876444 5999999999999998654 699999987644
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.88 E-value=0.0031 Score=40.86 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=37.8
Q ss_pred CCcccccccccccccCceeeeecCC-CCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGC-GHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
.+...|..|+-+... ++.| .|.+|..|+...+..+..||+|..++..
T Consensus 26 ~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccCC------eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 366789999976543 3357 5999999999999888889999988763
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.53 E-value=0.037 Score=33.60 Aligned_cols=48 Identities=25% Similarity=0.460 Sum_probs=32.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~~~~ 157 (172)
.....|.||.+. ++.+. --.|...||..|++..+.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~---~~ll~-Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLR-CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTCEE-CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeEEE-CCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999853 33222 236788899999987765432 3999976544
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.34 E-value=0.025 Score=36.86 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=24.4
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
+..|.||.+.+..+.. ..-+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av-~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAV-KTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCC-EEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCce-EECCcCChHHhHHHCHHH
Confidence 4679999986433321 122589999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.98 E-value=0.15 Score=32.37 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
...++.|.||-. +..++..+-. -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence 346788999963 2233322222 47899999999986
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.07 E-value=0.091 Score=32.41 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhc----CCCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK----VAACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~----~~~CP~CR~~~~ 157 (172)
++...|.+|..... ++....--.|...||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 35567999987653 3222222357778999999754332 224999987654
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.72 E-value=0.23 Score=29.43 Aligned_cols=45 Identities=31% Similarity=0.692 Sum_probs=29.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRT 154 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~ 154 (172)
..+..|.+|.+. ++.+. --.|...||..|+..-+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~-CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIIL-CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEE-CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEE-CCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356789999873 33222 23677789999998744322 23999965
No 79
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.50 E-value=0.48 Score=29.45 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=33.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh-----cCCCCcccccCCccCcccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-----KVAACPTCRTPTTFDRFLR 163 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-----~~~~CP~CR~~~~~~~~~~ 163 (172)
....| ||...+..+.....--.|...||..|+.--.. ..-.||.|+..-....+++
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K~ 71 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN 71 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCCC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCceee
Confidence 33456 89887643332222235777899999853221 2234999998766555444
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.35 E-value=0.075 Score=31.74 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh-----cCCCCcccccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-----KVAACPTCRTP 155 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-----~~~~CP~CR~~ 155 (172)
++...|++|...+..+.....--.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 355679999988754432222235777899999864322 22349999764
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.56 E-value=0.47 Score=42.93 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=47.1
Q ss_pred CcccccccccccccCceeeeecCCC-CcccHHHHHHHHhcCCCCcccccCCccCcccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG-HVFHRKCLDTWLLKVAACPTCRTPTTFDRFLRNS 165 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~~~~ 165 (172)
+...|+|-++-+.+ ++.++.| +.|-..+|.+|+..+.+||.=|.++...++..|.
T Consensus 890 ~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 890 DEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp GGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred HHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccH
Confidence 56789999999888 4566887 5899999999999888999999999988887663
No 82
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.09 E-value=0.17 Score=32.35 Aligned_cols=56 Identities=14% Similarity=0.362 Sum_probs=34.0
Q ss_pred CCccccccccccc-ccCceeeeecCCCCcccHHHHHHHHhcCC--CCcccccCCccCcc
Q 030757 106 GFESECVVCLEGF-KQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRTPTTFDRF 161 (172)
Q Consensus 106 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~~~~~~~~ 161 (172)
+.+..|.||.+.- ..++.+..--.|.-.||..|+..-..... .||.|.......++
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 4567899998753 12222232336777899999975332222 39999876655544
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.05 E-value=0.22 Score=28.21 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=26.8
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRT 154 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~ 154 (172)
.|.||...-..++.+. --.|...||..|++.=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~-Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL-CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE-CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE-CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888876533333222 23677889999997533322 13999864
No 84
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.69 E-value=0.31 Score=29.88 Aligned_cols=49 Identities=16% Similarity=0.425 Sum_probs=30.0
Q ss_pred CCccccccccccc-ccCceeeeecCCCCcccHHHHHHHHhcCC--CCccccc
Q 030757 106 GFESECVVCLEGF-KQGQWCRKLVGCGHVFHRKCLDTWLLKVA--ACPTCRT 154 (172)
Q Consensus 106 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~--~CP~CR~ 154 (172)
..+..|.||.+.- ..++.+..--.|.-.||..|+..-..... .||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998753 22233333346778899999975322222 3888854
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.58 E-value=0.2 Score=36.59 Aligned_cols=50 Identities=18% Similarity=0.421 Sum_probs=33.8
Q ss_pred cccccccccccccCce---eeeecCCCCcccHHHHHHH------Hh-----cCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQW---CRKLVGCGHVFHRKCLDTW------LL-----KVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~---~~~l~~C~H~fh~~Ci~~~------~~-----~~~~CP~CR~~~~ 157 (172)
+..|+||...|..++. ...--.|...||..|..-- +. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3569999999888752 3323367888999997421 11 1456999987654
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.79 E-value=0.17 Score=37.44 Aligned_cols=48 Identities=33% Similarity=0.542 Sum_probs=31.4
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~~ 157 (172)
..+..|.+|... ++ +..--.|...||..|+.+-+... -.||.|+..-.
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 355779999853 33 22223577889999997655432 23999987543
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.74 E-value=0.25 Score=29.23 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=29.6
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPT 156 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~ 156 (172)
..+..|.+|.+. ++.+. --.|...||..|+..-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLC-CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBC-CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEE-cCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356779999862 32222 22567789999998544322 1399997653
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.72 E-value=0.11 Score=30.22 Aligned_cols=45 Identities=38% Similarity=0.803 Sum_probs=28.5
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCccccc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRT 154 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~ 154 (172)
..+..|.+|.+. ++.+. --.|...||..|+.+-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~-Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEE-CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEE-cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 33222 236778899999985443221 2888753
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.23 E-value=1.9 Score=30.03 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=31.7
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHh---------cC--CCCcccccC
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---------KV--AACPTCRTP 155 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---------~~--~~CP~CR~~ 155 (172)
...++.|.+|.+. ++.+- --.|-.+||..|+.+-+. .. =.||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G~Llc-CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLIC-CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEE-CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEe-CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3467789999973 44322 236778899999997653 11 249999753
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.40 E-value=0.33 Score=35.14 Aligned_cols=47 Identities=32% Similarity=0.573 Sum_probs=31.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~~ 157 (172)
.++.|.+|.+. ++.+. --.|...||..|+.+-+... -.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~-Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLC-CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEE-CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ceeee-cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999853 43222 23577889999987655432 23999987654
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.37 E-value=1.1 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=24.4
Q ss_pred CcccccccccccccCceeeeec-CCCCcccHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLD 140 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~ 140 (172)
....|.+|..++..++..+.-- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4567999999987765444444 677789999974
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.57 E-value=0.58 Score=29.92 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=30.6
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCcccccC
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRTP 155 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~~ 155 (172)
.+.+..|.+|.+. ++.+. --.|.-.||..|+.+=+.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~-CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEE-CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEE-CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3466789999964 33222 235667899999976554322 39999754
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.52 E-value=3.2 Score=26.45 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=33.8
Q ss_pred CcccccccccccccCceeeeecCCC---CcccHHHHHHHHh-cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG---HVFHRKCLDTWLL-KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~~~~-~~~~CP~CR~~~~ 157 (172)
....|.||-+++.....=-..+.|. --.|..|.+-=.+ .++.||.|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999998865433222333554 3469999875544 3456999998876
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.47 E-value=1.2 Score=36.00 Aligned_cols=54 Identities=17% Similarity=0.483 Sum_probs=36.3
Q ss_pred cccccccccccccCceeeeecCCCCc--ccHHHHHHHHhcCC--CCcccccCCccCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV--FHRKCLDTWLLKVA--ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~~~~~~~--~CP~CR~~~~~~~~~~~ 164 (172)
...|++-...+..+. +. ..|.|. |-..-+-....+.. .||+|.+.+...++.-+
T Consensus 249 SL~CPlS~~ri~~Pv--Rg-~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID 306 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KS-INCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAIS 306 (371)
T ss_dssp ESBCTTTSSBCSSEE--EE-TTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEB
T ss_pred eecCCCccccccccC--cC-CcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEc
Confidence 457888777766642 33 489997 65554444444333 49999999988877654
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.80 E-value=1.3 Score=35.66 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=36.8
Q ss_pred cccccccccccccCceeeeecCCCCc--ccHHHHHHHHhcCC--CCcccccCCccCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHV--FHRKCLDTWLLKVA--ACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~~~~~~~--~CP~CR~~~~~~~~~~~ 164 (172)
...|++-...+..+. + ...|.|. |-..-+-....+.. .||+|.+.+..+++.-+
T Consensus 215 SL~CPlS~~ri~~P~--R-g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID 272 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--R-AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILD 272 (360)
T ss_dssp ESBCTTTCSBCSSEE--E-ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEB
T ss_pred eeeCCCccceeccCC--c-CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEc
Confidence 456998877776642 3 3489997 66555544444443 49999999988887654
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.15 E-value=0.19 Score=32.45 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=30.7
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCcccccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRTP 155 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~~ 155 (172)
.++..|.||...-..+.. ..--.|...||..|+.+=+.... .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~l-l~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKL-LFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGC-EECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCE-EEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 355679999876433222 22236778899999974333221 39999763
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.96 E-value=0.64 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=28.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhc---CCCCcccccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK---VAACPTCRTP 155 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~---~~~CP~CR~~ 155 (172)
+...| ||-.....+..+.- -.|.-.||..|+..-... .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33467 89776555443322 357788999998653221 1249999743
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.29 E-value=0.47 Score=31.40 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=25.2
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHh
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL 144 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~ 144 (172)
..++.|.||.+.-...+.+. -..|...||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~-C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFF-CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEE-CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeE-CCCCCCCcChHHhCCccc
Confidence 35678999987532222222 247888999999987654
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.89 E-value=0.33 Score=29.17 Aligned_cols=47 Identities=36% Similarity=0.731 Sum_probs=29.9
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPT 156 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~ 156 (172)
..+..|.||.+. ++.+. --.|...||..|+..-+... -.||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~ll~-CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELIC-CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEE-CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEE-cCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356789999863 33222 23577789999998543322 1399996543
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.92 E-value=0.48 Score=31.50 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=27.8
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRT 154 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~ 154 (172)
.|.+|.+.-.+++.+..--.|...||..|+++-+... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886422222222233678899999997644432 13998874
No 101
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.58 E-value=1.2 Score=27.30 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=29.3
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHH---------hcCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL---------LKVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~---------~~~~~CP~CR~~~~ 157 (172)
...| ||......+..+.- -.|...||..|+.--. ...-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~C-d~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICC-DRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEEC-SSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEe-CCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 89887654332222 2577889999985221 23456999976543
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=76.46 E-value=0.16 Score=29.86 Aligned_cols=46 Identities=35% Similarity=0.704 Sum_probs=29.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPT 156 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~ 156 (172)
.+..|.+|... ++.+. --.|...||..|+.+-+... -.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEE-CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEE-cCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999874 33222 23677889999998544322 1399886543
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.08 E-value=4.2 Score=27.76 Aligned_cols=47 Identities=28% Similarity=0.527 Sum_probs=30.3
Q ss_pred CCCcccccccccccccCceeeeecCCCCcccHHHHHHHH------hc---C--CCCcccccC
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL------LK---V--AACPTCRTP 155 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~------~~---~--~~CP~CR~~ 155 (172)
...++.|.+|.+. ++.+ .--.|-.+||..|+.+-+ .. . =.|+.|+..
T Consensus 54 Dg~~~~C~vC~dG---G~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456779999973 3322 223677899999999752 11 1 249999653
No 104
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.93 E-value=2.5 Score=25.66 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=26.5
Q ss_pred CcccccccccccccCceeeeecC--CC-CcccHHHHHHHHhcC----CCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG--CG-HVFHRKCLDTWLLKV----AACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~~~~~~----~~CP~CR~~~~ 157 (172)
+...| ||..... ++.+. --. |. ..||..|+. +... -.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~-CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEEC-CSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeE-eeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45567 8987532 32111 112 54 589999997 3322 23999976543
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.05 E-value=0.8 Score=26.00 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=26.8
Q ss_pred cccccccccccCceeeeec-CCCCcccHHHHHHHH----hcCCCCcccc
Q 030757 110 ECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLDTWL----LKVAACPTCR 153 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~~~----~~~~~CP~CR 153 (172)
.|.+|...+..+.....-- .|..-||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876554333333 477779999965321 2344588885
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.48 E-value=2.4 Score=27.20 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=26.4
Q ss_pred CcccccccccccccCceeeeecC--CC-CcccHHHHHHHHhcC----CCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG--CG-HVFHRKCLDTWLLKV----AACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~~~~~~----~~CP~CR~~~~ 157 (172)
+...| ||..... ++.+. --. |. ..||..|+. +... -.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44567 9987643 32111 112 44 579999997 3321 23999976543
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=73.38 E-value=0.6 Score=34.05 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=28.7
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcC----CCCcccccCC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV----AACPTCRTPT 156 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~----~~CP~CR~~~ 156 (172)
++.|.+|.+. ++.+. -..|...||..|+.+=+... -.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCC-CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeE-CCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 33222 22566789999997544321 2399998754
No 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.96 E-value=0.9 Score=32.38 Aligned_cols=48 Identities=17% Similarity=0.531 Sum_probs=29.9
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHH-----hcCCCCcccccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL-----LKVAACPTCRTP 155 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~-----~~~~~CP~CR~~ 155 (172)
....| +|......+.....--.|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998765333222223577889999985321 123359999864
No 109
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.79 E-value=4.7 Score=25.22 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.7
Q ss_pred CCcccccccccccccCceeeeecCC----CCcccHHHHHHHHhc
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGC----GHVFHRKCLDTWLLK 145 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C----~H~fh~~Ci~~~~~~ 145 (172)
.....|.+|.+.++..-- +.| .|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHF----VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHF----VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTS----EECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCce----eeCCCccCCeeeccccHHHHHh
Confidence 456789999999887532 245 689999999988763
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.13 E-value=7.7 Score=25.47 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=22.0
Q ss_pred Ccccccccccccc-----cCceeeeecCCCCcccHHHHH
Q 030757 107 FESECVVCLEGFK-----QGQWCRKLVGCGHVFHRKCLD 140 (172)
Q Consensus 107 ~~~~C~ICl~~~~-----~~~~~~~l~~C~H~fh~~Ci~ 140 (172)
....|.+|+..-. .++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3457999986521 122333334788999999995
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.07 E-value=0.69 Score=28.76 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=26.0
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcC-----CCCccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-----AACPTCRT 154 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-----~~CP~CR~ 154 (172)
.|.+|...-..+.. ..--.|...||..|+.+-+... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~l-l~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQ-LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGE-EECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcce-eEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57777765333322 2223577889999998654321 24888875
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=67.14 E-value=0.98 Score=27.27 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=27.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh---cCCCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVAACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~~CP~CR~ 154 (172)
+...| ||......+..|.- -.|...||..|+.--.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqC-d~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIEC-NECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEEC-TTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEEC-CCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44567 99876553222222 25777899999863221 2234888864
No 113
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.22 E-value=3.4 Score=24.82 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=31.1
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
...|+.|-+.+..++.+. .-+..||.+|. .|-.|+..|....
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFCL--------KCERCSKTLTPGG 50 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCCC--------CCCCCCCccCCCc
Confidence 467999999888666443 35678998884 5999998887543
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=65.03 E-value=2.5 Score=27.70 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=32.5
Q ss_pred cccccccccccccCceeeeec-CCCCcccHHHHHHHHh----------cCCCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLV-GCGHVFHRKCLDTWLL----------KVAACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~~~~----------~~~~CP~CR~~~~~ 158 (172)
...|.||...+..+.....-- .|...||..|+.--.. ..-.||.|+..-..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 357999999886654333332 4677899999752210 22349999876543
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.65 E-value=1.2 Score=27.02 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=28.9
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh----cCCCCcccccCC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL----KVAACPTCRTPT 156 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~----~~~~CP~CR~~~ 156 (172)
....| ||......+.....--.|...||..|+.--.. ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 44568 79876544432222235777799999864321 223499997643
No 116
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.83 E-value=7.1 Score=23.85 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=32.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
....|+-|-+.+...+.+. .-+..||..|. .|-.|+..|....+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWPGGY 57 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCTTSE
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCCCce
Confidence 4567999999886655433 34678998884 58899888876554
No 117
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=63.61 E-value=3.3 Score=24.36 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCccccccccccccc-CceeeeecCCCCcccHHHHHHHHh-----cC--CCCcccccCCc
Q 030757 106 GFESECVVCLEGFKQ-GQWCRKLVGCGHVFHRKCLDTWLL-----KV--AACPTCRTPTT 157 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~~~~-----~~--~~CP~CR~~~~ 157 (172)
..+..|.+|...... +..+..--.|...||..|+..-+. .. =.|+.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999976432 222222346778899999875331 12 23998865443
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=62.68 E-value=1.8 Score=25.27 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=24.7
Q ss_pred CcccccccccccccCceeeeecC--CC-CcccHHHHHHHHhcC----CCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG--CG-HVFHRKCLDTWLLKV----AACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~~~~~~----~~CP~CR~ 154 (172)
+..-| ||.+... ++.+. --. |. ..||..|+. +... -.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~-CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIG-CDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeE-eeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44557 8987642 32111 113 55 589999997 3322 23998864
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.04 E-value=2 Score=29.52 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCcccccccccccc-cCceeeeecCCCCcccHHHHH
Q 030757 106 GFESECVVCLEGFK-QGQWCRKLVGCGHVFHRKCLD 140 (172)
Q Consensus 106 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~ 140 (172)
.++..|.+|...+. ....-..-..|+|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999883 222223344789999988864
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.98 E-value=7.4 Score=25.58 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=27.8
Q ss_pred CCCcccccccccccccCceeeeec--CCCCcccHHHHHHHHhcC--C--CCcccccCCc
Q 030757 105 PGFESECVVCLEGFKQGQWCRKLV--GCGHVFHRKCLDTWLLKV--A--ACPTCRTPTT 157 (172)
Q Consensus 105 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~~~~~~--~--~CP~CR~~~~ 157 (172)
...++.|.+|.+ .++ +..-- .|-..||..|+. +... . .||.|+-.+-
T Consensus 12 ~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 346678999984 232 22121 366789999997 4322 1 2887765443
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.96 E-value=1.4 Score=27.31 Aligned_cols=46 Identities=28% Similarity=0.531 Sum_probs=27.9
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhc--CC---CCccccc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK--VA---ACPTCRT 154 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~--~~---~CP~CR~ 154 (172)
+..|.||...-..++.+ .--.|...||..|+++-+.. .. .||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788998643333322 22367788999999854332 12 3888864
No 122
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=61.06 E-value=5.3 Score=23.36 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=28.5
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcC-CCCccc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKV-AACPTC 152 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~-~~CP~C 152 (172)
..|--|...+..... ..-..|++.|+.+|= .++... .+||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccchh-HHHHhhccCCcCC
Confidence 358899888854322 234578999999994 444433 469988
No 123
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=60.89 E-value=1.9 Score=25.21 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=24.2
Q ss_pred CcccccccccccccCceeeeecC--CC-CcccHHHHHHHHhcC----CCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG--CG-HVFHRKCLDTWLLKV----AACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~~~~~~----~~CP~CR~ 154 (172)
+...| ||..... ++.+. --. |. ..||..|+. +... -.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~-CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEE-eCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8987532 32111 113 44 579999997 3322 23888864
No 124
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.47 E-value=4.1 Score=24.41 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 030757 109 SECVVCLEGFK 119 (172)
Q Consensus 109 ~~C~ICl~~~~ 119 (172)
..|..|...+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 34444444443
No 125
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.74 E-value=1.7 Score=26.34 Aligned_cols=44 Identities=30% Similarity=0.554 Sum_probs=25.9
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhc--CC---CCccccc
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK--VA---ACPTCRT 154 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~--~~---~CP~CR~ 154 (172)
.|.+|...-..++. ..--.|...||..|+.+=+.. .. .||.|+.
T Consensus 20 ~C~~C~~~~~~~~l-l~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQ-LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGE-EECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCE-EEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56788754223322 222357788999999854332 12 3888865
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=59.58 E-value=3.1 Score=25.33 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=31.7
Q ss_pred ccccccccccCceeeeecCCCCcccHHHHHHHHh-----cCCCCcccccCCccCccccc
Q 030757 111 CVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-----KVAACPTCRTPTTFDRFLRN 164 (172)
Q Consensus 111 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-----~~~~CP~CR~~~~~~~~~~~ 164 (172)
--||...+..+.....--.|.-.||..|+.--.. ..-.||.|+..-..+.+++.
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~k~k 70 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKK 70 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCBCSC
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCCeEeec
Confidence 3388876643332222235777899999954321 22349999876655555443
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.80 E-value=7.1 Score=24.59 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCcccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
++...|.+|...|..-..----..||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345679999998875421111136899999999754
No 128
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.62 E-value=14 Score=22.89 Aligned_cols=42 Identities=21% Similarity=0.491 Sum_probs=29.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
....|+-|-+.+...+.+. .-+..||..|. .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCCC
Confidence 3467999988887655432 45677888884 477887777654
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.76 E-value=5.9 Score=24.52 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=24.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
+...|.+|...|.....----..||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345799999988753211111379999999997643
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.55 E-value=7.3 Score=22.84 Aligned_cols=42 Identities=31% Similarity=0.635 Sum_probs=28.9
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+...+. .+..-+..||..|. .|-.|+..+....
T Consensus 6 ~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSR--KLEYGGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSC--EECSTTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCccCCCccccCcc--EEEECccccCcccC--------eECCCCCcCCCCc
Confidence 578999888876432 22245778888884 4888888887543
No 131
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.55 E-value=6.3 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=24.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
+...|.+|...|..-..----..||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456799999988754211111369999999997653
No 132
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=56.71 E-value=7.5 Score=22.40 Aligned_cols=41 Identities=22% Similarity=0.507 Sum_probs=28.8
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
...|+-|-+.+. ++. +..-+..||..|. .|-.|+..+....
T Consensus 5 ~~~C~~C~~~I~-~~~---~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV---VNAMGKQWHVEHF--------VCAKCEKPFLGHR 45 (66)
T ss_dssp CCEETTTTEECC-SCE---ECCTTSBEETTTC--------BCTTTCCBCSSSC
T ss_pred CCCCcccCCEec-ceE---EEECccccccCcC--------EECCCCCCCCCCc
Confidence 357999998887 432 2245778998884 5889988887543
No 133
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.62 E-value=7.4 Score=22.80 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=28.7
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+.|-+.+...+.+.. .-+..||..|. .|-.|+..+....
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETCF--------ICHRCQQPIGTKS 47 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTTT--------CCSSSCCCCCSSS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccCC--------cccccCCccCCCc
Confidence 468999888876542222 34667888884 4888888887553
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.28 E-value=5.4 Score=25.22 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=24.6
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
+...|.+|...|..-..-.--..||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999988753211112479999999997654
No 135
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.89 E-value=26 Score=21.58 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=3.0
Q ss_pred CCChhHH
Q 030757 30 PKILPIL 36 (172)
Q Consensus 30 ~~~~~l~ 36 (172)
++.+.++
T Consensus 8 ~n~~~Iv 14 (79)
T 2knc_B 8 PDILVVL 14 (79)
T ss_dssp SCSHHHH
T ss_pred CCchhhH
Confidence 3444443
No 136
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.65 E-value=9.3 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.533 Sum_probs=30.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
....|+-|-+.+...+.+.. .-+..||..|. .|-.|+..+....
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE--ETTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CCCCchhcCCccCCCceEEE--eCccEeccccC--------eECCCCCCCCCCC
Confidence 44679999998875443221 34667888884 4888988887543
No 137
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.32 E-value=14 Score=22.27 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=29.8
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
....|+-|-+.+. +.. +..-+..||.+| ..|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~-~~~---v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 55 (79)
T 2cor_A 14 GKYICQKCHAIID-EQP---LIFKNDPYHPDH--------FNCANCGKELTADA 55 (79)
T ss_dssp CCCBCTTTCCBCC-SCC---CCCSSSCCCTTT--------SBCSSSCCBCCTTC
T ss_pred CCCCCccCCCEec-ceE---EEECcceeCCCC--------CEeCCCCCccCCCC
Confidence 4467999998877 332 224577889888 45899998887543
No 138
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.49 E-value=9.7 Score=23.15 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=30.1
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
....|+-|-+.+..++.+. .-+..||.+|. .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL---ALDKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE---ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEE---ECCcccccccC--------CcCcCCCCcCC
Confidence 4567999999887665433 34677898884 58999888863
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.18 E-value=2.5 Score=31.72 Aligned_cols=46 Identities=28% Similarity=0.526 Sum_probs=24.2
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhc--CC---CCcccccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK--VA---ACPTCRTP 155 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~--~~---~CP~CR~~ 155 (172)
..|.+|...-..+.. ..--.|...||..|+.+=+.. .. .||.|+..
T Consensus 175 c~C~vC~~~~~~~~l-L~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQ-LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CC-EECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCe-EEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 358888764222222 222367788999999854432 12 39999653
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.05 E-value=9.1 Score=22.46 Aligned_cols=44 Identities=20% Similarity=0.442 Sum_probs=29.4
Q ss_pred ccccccccccccc--CceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 108 ESECVVCLEGFKQ--GQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 108 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
...|+-|-+.+.. ++.+ +..-+..||.+|. .|-.|+..+....+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--~~a~~~~wH~~CF--------~C~~C~~~L~~~~f 50 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY--ISFEERQWHNDCF--------NCKKCSLSLVGRGF 50 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC--EECSSCEECTTTC--------BCSSSCCBCTTSCC
T ss_pred CCCCcCCCccccCCCCcce--EEECCcccCcccC--------EeccCCCcCCCCcc
Confidence 3569999888775 2222 2245778998884 58889888875443
No 141
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.55 E-value=6.1 Score=26.64 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=24.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
+...|.+|...|.....-.--..||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345799999988753211111379999999997543
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.35 E-value=11 Score=22.76 Aligned_cols=42 Identities=21% Similarity=0.573 Sum_probs=30.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+.|-+.+..++.+. ..-+..||.+|. .|-.|+..+....
T Consensus 16 ~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~~ 57 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV--EYKGTVWHKDCF--------TCSNCKQVIGTGS 57 (82)
T ss_dssp CBCSSSCCBCCSSSCEE--ECSSCEEETTTC--------CCSSSCCCCTTSC
T ss_pred CcCccCCcccccCceEE--EECccccccccC--------chhhCCCccCCCc
Confidence 57999999888655432 135678998884 5889988887553
No 143
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.01 E-value=7.6 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=22.3
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
..|.+|...|..-..----..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999998875321111136999999999653
No 144
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.89 E-value=1.5 Score=29.58 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=28.5
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~ 154 (172)
....|..|-..|..-..----..||.+||..|..........|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 345799999888653211111379999999997665544555777744
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.51 E-value=10 Score=22.19 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=25.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|+.|-+.+...+.+. . .-+..||..|. .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~-a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGV-V-ALDRVFHVGCF--------VCSTCRAQLRGQ 46 (72)
T ss_dssp CCCSSSCSCCCSSSCCE-E-CSSSEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCccCCCccCCCceEE-E-ECCCeEcccCC--------cccccCCcCCcC
Confidence 46888887766533211 1 34667887773 477887777543
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.09 E-value=12 Score=22.32 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=28.5
Q ss_pred cccccccccccc--CceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQ--GQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+.. +..+. . .-+..||.+|. .|-.|+..+....
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~-a~~~~wH~~CF--------~C~~C~~~L~~~~ 49 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-C-FQDSQWHSECF--------NCGKCSVSLVGKG 49 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-E-ETTEEEEGGGC--------BCTTTCCBCSSSC
T ss_pred CCCccCCCcccCCCCceeE-E-ECCcccCcccC--------ChhhCCCcCCCCc
Confidence 569999988774 22222 2 35677998884 5888988887443
No 147
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.95 E-value=3.7 Score=24.95 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=28.0
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
...|+.|-+.+..++.+. .-+..||.+|. .|-.|+..+....
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCCF--------LCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSSE--------ECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeEE---eCCcccccccC--------ccCCCCCCCCCCC
Confidence 356888888886665433 35667887774 3788887776543
No 148
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.94 E-value=7.7 Score=24.07 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
+...|.+|...|..-..----..||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44579999998864321011136999999999653
No 149
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.17 E-value=2.9 Score=27.50 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=14.7
Q ss_pred CCCCcccHHHHHHHHhcCCCCcccccCC
Q 030757 129 GCGHVFHRKCLDTWLLKVAACPTCRTPT 156 (172)
Q Consensus 129 ~C~H~fh~~Ci~~~~~~~~~CP~CR~~~ 156 (172)
.||+.|. .-+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 7999981 1122335699998763
No 150
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.91 E-value=17 Score=22.31 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=30.3
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
....|+-|-+.+.. . .+..-+..||.+|. .|-.|+..|....
T Consensus 24 ~~~~C~~C~~~I~~-~---~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A---VVKARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCS-C---CEESSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecc-c---EEEECCceECccCC--------EecCCCCCCCCCC
Confidence 45679999998875 2 22246778999884 4899998887543
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=49.28 E-value=0.93 Score=30.19 Aligned_cols=46 Identities=20% Similarity=0.440 Sum_probs=28.0
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcCC----CCcccccCC
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVA----ACPTCRTPT 156 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~----~CP~CR~~~ 156 (172)
.|.||...-..++.+. --.|...||..|+.+=+.... .||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~-Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLF-CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEE-CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEE-cCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5888876533333222 236788899999985433221 388886543
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.09 E-value=12 Score=21.66 Aligned_cols=40 Identities=28% Similarity=0.648 Sum_probs=27.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+... . +..-+..||.+|. .|-.|+..+....
T Consensus 6 ~~C~~C~~~I~~~-~---~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G---VTYREQPWHKECF--------VCTACRKQLSGQR 45 (70)
T ss_dssp CBCSSSCCBCCSS-E---EESSSSEEETTTS--------BCSSSCCBCTTSC
T ss_pred CCCcccCCeeccc-e---EEECccccCCCCC--------ccCCCCCcCCcCc
Confidence 5688888887643 2 2245778888884 4888888876443
No 153
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=46.91 E-value=8.6 Score=19.04 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=17.3
Q ss_pred ccccccccccccCceeeeecCCCCcccHHH
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKC 138 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 138 (172)
..|+.|-...-..+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 46888877665544322 4467788877
No 154
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.86 E-value=9.5 Score=23.30 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=28.1
Q ss_pred CcccccccccccccCceeeeec--CCCCcccHHHHHHHHh---------cCCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLV--GCGHVFHRKCLDTWLL---------KVAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~~~~---------~~~~CP~CR~~~~ 157 (172)
....| ||-.....+.. +.-- .|...||..|+.---. ..-.||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~M-I~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSM-IQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCE-EECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCE-EEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 44567 79876333321 1112 4777899999853221 1234999976543
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.84 E-value=12 Score=23.13 Aligned_cols=43 Identities=19% Similarity=0.537 Sum_probs=30.4
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
....|+-|-+.+. ++.+. .-+..||.+|. .|-.|+..|....+
T Consensus 24 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~~f 66 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAYIGF 66 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSSSCB
T ss_pred CCCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCCCEe
Confidence 4467999999885 33222 45778998884 59999998875443
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.27 E-value=8 Score=28.77 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=24.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
.+..|.+|...|..-..-.--..||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999988754211112379999999997643
No 157
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=46.26 E-value=15 Score=21.27 Aligned_cols=42 Identities=21% Similarity=0.594 Sum_probs=30.1
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
...|+-|-+.+..++.+.. .-+..||..|. .|-.|+..+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4579999998887664322 34667898885 488898888754
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.82 E-value=7.6 Score=28.63 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=23.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHH
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDT 141 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 141 (172)
.+..|.+|...|..-..-.--..||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35789999998864321111137999999999654
No 159
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.81 E-value=2.7 Score=24.79 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=24.5
Q ss_pred CcccccccccccccCceeeeecC--CC-CcccHHHHHHHHh--cCCCCccccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVG--CG-HVFHRKCLDTWLL--KVAACPTCRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~~~~--~~~~CP~CR~ 154 (172)
+..-| +|..... ++.+. --. |. ..||..|+.--.. ..-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~MI~-CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIG-CDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEE-CSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeee-eeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 8987532 32111 113 44 6899999872111 1123998865
No 160
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.43 E-value=25 Score=24.74 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCcccccccccccccCceeeeec--CCCCcccHHHHHHHHhcC----------CCCcccccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLV--GCGHVFHRKCLDTWLLKV----------AACPTCRTP 155 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~~~~~~----------~~CP~CR~~ 155 (172)
+.+.-|.||-+. + .+..-- .|...||..||+..+... =+|=+|.-.
T Consensus 77 G~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 77 GYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 356678888863 2 223232 577899999999987542 138788544
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.30 E-value=6.7 Score=20.25 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.3
Q ss_pred cccccccccccccCc
Q 030757 108 ESECVVCLEGFKQGQ 122 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~ 122 (172)
...|++|+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 467888887776644
No 162
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.26 E-value=13 Score=26.01 Aligned_cols=47 Identities=19% Similarity=0.491 Sum_probs=29.4
Q ss_pred CCccccccccccccc--CceeeeecCCCCcccHHHHHHHHhcCCC--Cccccc
Q 030757 106 GFESECVVCLEGFKQ--GQWCRKLVGCGHVFHRKCLDTWLLKVAA--CPTCRT 154 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~~~~~~~~--CP~CR~ 154 (172)
.++..|++|...|.- +.. ..-..|+|.+|..|-. |...... |-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCC-CcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 467899999997642 222 2234799999999972 3332222 666654
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.02 E-value=12 Score=21.75 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.6
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
...|+-|-+.+.. +. +..-+..||.+|. .|-.|+..|....
T Consensus 5 ~~~C~~C~~~I~~-~~---~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV---IKAMNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CC---EEETTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eE---EEECcccccccCC--------EeCCCCCcCCCCc
Confidence 3568888887763 22 2234667888884 4888888887654
No 164
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.76 E-value=5.5 Score=32.23 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=0.0
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHh-------cCCCCcccccCC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-------KVAACPTCRTPT 156 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-------~~~~CP~CR~~~ 156 (172)
....|.+|...|.....-.-...||++||..|...... ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999988864321111237999999999876542 123477775544
No 165
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.55 E-value=18 Score=21.68 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=28.7
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+..++.+ +..-+..||..|. .|-.|+..+....
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 57 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGCF--------RCCRCQRSLADEP 57 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTTS--------BCTTTCCBCSSCC
T ss_pred CcCccCCCccccCcEE--EEeCCccccccCC--------eecCCCCccCCCc
Confidence 4799999988743322 2234677898884 4888988887544
No 166
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=40.02 E-value=3.8 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=22.1
Q ss_pred ccccccccCceeeeecCCCCcccHHHHHHHHh---cCCCCccccc
Q 030757 113 VCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL---KVAACPTCRT 154 (172)
Q Consensus 113 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~---~~~~CP~CR~ 154 (172)
||......+..+.- -.|..-||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~C-d~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIEC-NECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEEC-TTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEc-CCCCccccccccCCCcccCCCcEECcCCCC
Confidence 56655432222221 24677799999853221 2234888864
No 167
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.43 E-value=17 Score=21.82 Aligned_cols=39 Identities=23% Similarity=0.646 Sum_probs=27.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|+-|-+.+.. +.+. .-+..||.+|. .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCCCC
Confidence 479999988773 3222 45677898884 488888887643
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.02 E-value=22 Score=20.96 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=23.5
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
..|+-|-..+.. . .+..-+..||.+|. .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~-~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-e---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 457778777654 2 22245667887773 4777777766
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.43 E-value=22 Score=21.20 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=28.7
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
....|+-|-+.+... . +..-+..||.+|. .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~-~---~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-F---VKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSS-C---EECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccCc-E---EEECcceeCcCcC--------eeCCCCCCCCC
Confidence 346799999887752 2 2245788998884 48889888764
No 170
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.83 E-value=21 Score=21.29 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=26.1
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCcc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTF 158 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~ 158 (172)
..|+.|-+.+. +. .+..-+..||.+|. .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~-~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GP---FMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SC---CBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ce---EEEECCceeccccC--------CccCCCCccCC
Confidence 46888988877 33 22245677888774 48888888853
No 171
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=23 Score=20.87 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=28.7
Q ss_pred cccccccccccc---CceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQ---GQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+.. +.... . .=+..||..| ..|-.|+..+....
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~~~ 60 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-A-YEGQSWHDYC--------FHCKKCSVNLANKR 60 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-E-ETTEEEETTT--------CBCSSSCCBCTTSC
T ss_pred ccCcccCCcccCCCCCceeE-E-ECcceeCccc--------CEehhcCCCCCCCc
Confidence 579999988874 22222 1 3467799888 45999998887543
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.12 E-value=14 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.415 Sum_probs=29.0
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
...|+-|-+.+.....+. .-+..||..| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 457999999887654232 4577899988 45999998886
No 173
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.38 E-value=15 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.533 Sum_probs=28.7
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRF 161 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~ 161 (172)
...|+-|-+.+.. .. +..-+..||..|. .|-.|+..+....+
T Consensus 15 ~~~C~~C~~~I~~-~~---~~a~~~~~H~~CF--------~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 15 LEKCATCSQPILD-RI---LRAMGKAYHPGCF--------TCVVCHRGLDGIPF 56 (81)
T ss_dssp CCBCTTTCCBCCS-CC---EEETTEEECTTTC--------BCSSSCCBCTTSCE
T ss_pred CCccccCCCeecc-ee---EEECCccccHHhc--------CcccCCCccCCCee
Confidence 4579999888763 22 2245677888884 58899888875544
No 174
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.69 E-value=23 Score=20.21 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=28.7
Q ss_pred ccccccccccccCceeeeecCCCCccc--HHHHHHHHhcCCCCcccccCCccCc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFH--RKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh--~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
..|+-|-+.+..++.... .-+..|| .+| ..|-.|+.++....
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C--------F~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTEC--------FLCSCCSKCLIGQK 46 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTT--------SBCTTTCCBCTTSC
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCC--------EECCCCCCcCCCCc
Confidence 468889888876422221 3577899 888 45888988887544
No 175
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.82 E-value=23 Score=21.06 Aligned_cols=39 Identities=31% Similarity=0.702 Sum_probs=26.9
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|+-|-+.+... . +..-+..||.+|. .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~-~---v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G---VTYRDQPWHRECL--------VCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCSC-C---EESSSSEECTTTC--------BCSSSCCBCTTC
T ss_pred CcCCCCCCEecCc-E---EEECCchhhhhhC--------CcccCCCcCCCC
Confidence 5688888887653 2 2245777888884 488888888643
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=33.53 E-value=19 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=14.1
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHH
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWL 143 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~ 143 (172)
-..|..|-..+..++.... .=+..||..|....+
T Consensus 36 CF~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLL--INSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHh
Confidence 3445555555433322111 123445555554443
No 177
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.81 E-value=14 Score=21.31 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=25.2
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|+-|-+.+.. +.+. .-+..||.+|. .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT---YQDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCSSSCCCCCT-TCEE---ETTEEECTTTT--------BCTTTCCBCTTS
T ss_pred CCCcccCCEeCc-ceEE---ECccccccCcC--------EECCCCCCCCCC
Confidence 468888877754 2222 34667887774 488888877643
No 178
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.51 E-value=42 Score=20.80 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=27.0
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
-..|..|...+.... .. . .=+..||..|..+ .....|..|...+...
T Consensus 33 CF~C~~C~~~L~~~~-~~-~-~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 33 CFRCAKCLHPLANET-FV-A-KDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TCCCSSSCCCTTSSC-CE-E-ETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred CCcccccCCCCCcCe-eE-C-cCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 456777776664321 11 1 2345677777643 2235688888888743
No 179
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.47 E-value=42 Score=21.86 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=33.9
Q ss_pred ccccccccccccc-CceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCccc
Q 030757 108 ESECVVCLEGFKQ-GQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDRFL 162 (172)
Q Consensus 108 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~~~ 162 (172)
-..|..|-..+.. +.... . .=+..||..|..+.+.....|-.|...+....+.
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 4568888777652 11111 1 2356788889888766555799998888865443
No 180
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.02 E-value=36 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=16.6
Q ss_pred Cccccccccccccc-CceeeeecCCCCcccHHHHHHHHh
Q 030757 107 FESECVVCLEGFKQ-GQWCRKLVGCGHVFHRKCLDTWLL 144 (172)
Q Consensus 107 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~~~~ 144 (172)
.-..|..|-..+.. +.... . .=+..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCC-C-BTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeE-E-ECCeeechHHHHHHhC
Confidence 34556666655542 11111 1 1244566666655444
No 181
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.78 E-value=16 Score=22.86 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=31.7
Q ss_pred Cccccccccccccc-CceeeeecCCCCcccHHHHHHHHhc--------CCCCcccccCCc
Q 030757 107 FESECVVCLEGFKQ-GQWCRKLVGCGHVFHRKCLDTWLLK--------VAACPTCRTPTT 157 (172)
Q Consensus 107 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~~~~~--------~~~CP~CR~~~~ 157 (172)
.+..|.+|...-.. +..+..--.|...||..|+..-+.. .=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 45679999975332 2223333467888999999865431 123999976543
No 182
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.51 E-value=5.2 Score=23.36 Aligned_cols=36 Identities=28% Similarity=0.658 Sum_probs=21.3
Q ss_pred ccccccccccccCceeeeec--C--CCCcccHHHHHHHHh
Q 030757 109 SECVVCLEGFKQGQWCRKLV--G--CGHVFHRKCLDTWLL 144 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~--~--C~H~fh~~Ci~~~~~ 144 (172)
..|+-|...++..+...-+. . |++.|+..|..+|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888877776654332221 2 666677777666643
No 183
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=29.73 E-value=11 Score=31.40 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=29.4
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhc-----CCCCcccccCCcc
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLK-----VAACPTCRTPTTF 158 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~-----~~~CP~CR~~~~~ 158 (172)
...| ||...+..+......-.|.-.||..|+.---.. .-.||.|+..-..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 91 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCS
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCc
Confidence 3445 998876433322222357778999998532221 1349999865443
No 184
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.19 E-value=3.4 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=18.7
Q ss_pred CCCccccccccc-ccccCceeeeecCCCCcccHHHHHHH
Q 030757 105 PGFESECVVCLE-GFKQGQWCRKLVGCGHVFHRKCLDTW 142 (172)
Q Consensus 105 ~~~~~~C~ICl~-~~~~~~~~~~l~~C~H~fh~~Ci~~~ 142 (172)
.++...|.||.. .|.++---. -..|.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~-C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHN-CSYCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEE-BTTTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCcc-ccccCCeeecccCCEe
Confidence 345678999986 344421111 1134444555554444
No 185
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.02 E-value=23 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=27.0
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
..|+-|-+.+.. +.+. .-+..||.+|. .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCcC--------ChhhCCCCCCCC
Confidence 568889888775 2222 34667888873 488898888754
No 186
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.72 E-value=47 Score=26.87 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=30.3
Q ss_pred CCcccccccccccccCceeeeec--CCCCcccHHHHHHHHhcC----------CCCcccccC
Q 030757 106 GFESECVVCLEGFKQGQWCRKLV--GCGHVFHRKCLDTWLLKV----------AACPTCRTP 155 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~~~~~~----------~~CP~CR~~ 155 (172)
..+..|.+|-+. ++ +..-- .|...||..||+..+... =+|=+|.-.
T Consensus 91 G~~~yCr~C~~G---g~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG---ET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC---SS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC---Ce-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 356678888863 21 22222 688999999999998432 248888654
No 187
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=28.44 E-value=41 Score=15.54 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=12.8
Q ss_pred CCCccccCCCCCCCCCC
Q 030757 4 PQRYQHYDDVDVHRRHD 20 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (172)
+..|++|||.+-...-.
T Consensus 3 tpdyghyddkdtldlnt 19 (26)
T 2k3u_B 3 TPDYGHYDDKDTLDLNT 19 (26)
T ss_dssp CSCCCEECSSSCCBTTC
T ss_pred cCcccccCCccccccCC
Confidence 56799999988765544
No 188
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.19 E-value=87 Score=17.78 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 030757 38 KVIIMTLITSMF 49 (172)
Q Consensus 38 ~~ii~~~~~~i~ 49 (172)
+++++.++..++
T Consensus 10 WiIi~svl~GLL 21 (54)
T 2l8s_A 10 WVILLSAFAGLL 21 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 189
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.63 E-value=26 Score=22.71 Aligned_cols=11 Identities=45% Similarity=1.201 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 030757 134 FHRKCLDTWLL 144 (172)
Q Consensus 134 fh~~Ci~~~~~ 144 (172)
||..|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 190
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.54 E-value=26 Score=22.66 Aligned_cols=11 Identities=55% Similarity=1.437 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 030757 134 FHRKCLDTWLL 144 (172)
Q Consensus 134 fh~~Ci~~~~~ 144 (172)
||..|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 191
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.95 E-value=30 Score=24.61 Aligned_cols=41 Identities=20% Similarity=0.521 Sum_probs=28.1
Q ss_pred cccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 108 ESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 108 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
...|+.|-+.+..++.+. .-+..||.+| ..|-.|+..+...
T Consensus 115 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI---GAGKSWHKSC--------FRCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEE---ETTEEECTTT--------CBCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEe---cCCCccchhc--------CCccccCCCCCCC
Confidence 456999988887655433 3466788877 3488888887644
No 192
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=26.38 E-value=36 Score=15.72 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCC
Q 030757 16 HRRHDSPPLPPK 27 (172)
Q Consensus 16 ~~~~~~~~~p~~ 27 (172)
|.--.|+.|||+
T Consensus 5 hsivqppapppn 16 (26)
T 2lkw_A 5 HSIVQPPAPPPN 16 (26)
T ss_pred cccccCCCcCCC
Confidence 333344444444
No 193
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.30 E-value=37 Score=22.08 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=32.5
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccC
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 159 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~ 159 (172)
+-..|..|...+.... .. . .=+..||..|..+. ....|..|...+...
T Consensus 29 ~CF~C~~C~~~L~~~~-f~-~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEI-YV-M-VNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSE-EE-E-ETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCE-EE-e-ECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 4567888888776431 11 1 34667888888663 345699999999863
No 194
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.93 E-value=18 Score=17.67 Aligned_cols=10 Identities=30% Similarity=1.042 Sum_probs=7.0
Q ss_pred CCcccccCCc
Q 030757 148 ACPTCRTPTT 157 (172)
Q Consensus 148 ~CP~CR~~~~ 157 (172)
.||+|+....
T Consensus 5 ~CpvCk~q~P 14 (28)
T 2jvx_A 5 CCPKCQYQAP 14 (28)
T ss_dssp ECTTSSCEES
T ss_pred cCccccccCc
Confidence 4888877654
No 195
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.92 E-value=45 Score=23.56 Aligned_cols=37 Identities=30% Similarity=0.743 Sum_probs=17.5
Q ss_pred cccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCC
Q 030757 110 ECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPT 156 (172)
Q Consensus 110 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~ 156 (172)
.|+.|-..+...+.+.. .-++.||..| ..|-.|+..+
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCC
Confidence 35555555543332211 2345566555 2355555555
No 196
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.69 E-value=48 Score=22.95 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=33.2
Q ss_pred CcccccccccccccCceeeeecCCCCcccHHHHHHHHhcCCCCcccccCCccCc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFDR 160 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~~~~~CP~CR~~~~~~~ 160 (172)
+-..|..|...+.... .. .=+..||..|..+.+ ...|..|...+...+
T Consensus 32 ~CF~C~~C~~~L~~~~---f~-~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC---FS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCC---EE-SSSCEECHHHHHHHH--SCBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCC---cc-cCCeeeecccccccc--cccccccccccCCCc
Confidence 5578888888776542 12 346678888887643 356999999887654
No 197
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.28 E-value=8.8 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=24.0
Q ss_pred CcccccccccccccCceeeeecCCC---CcccHHHHHHHHh--cCCCCcc-ccc
Q 030757 107 FESECVVCLEGFKQGQWCRKLVGCG---HVFHRKCLDTWLL--KVAACPT-CRT 154 (172)
Q Consensus 107 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~~~~--~~~~CP~-CR~ 154 (172)
+...| ||..... ++.+. --.|. ..||..|+.--.. ..-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~MI~-CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVA-CDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEEC-CCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEE-ecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44567 8987432 33111 11333 5799999862111 1223999 864
No 198
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.05 E-value=4.6 Score=24.94 Aligned_cols=20 Identities=35% Similarity=1.012 Sum_probs=15.4
Q ss_pred CCCCcccHHHHHHHHhcCCCCc
Q 030757 129 GCGHVFHRKCLDTWLLKVAACP 150 (172)
Q Consensus 129 ~C~H~fh~~Ci~~~~~~~~~CP 150 (172)
.|++.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5899999999988843 4453
No 199
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.92 E-value=17 Score=21.82 Aligned_cols=17 Identities=41% Similarity=1.044 Sum_probs=10.3
Q ss_pred HhcCCCCcccccCCccC
Q 030757 143 LLKVAACPTCRTPTTFD 159 (172)
Q Consensus 143 ~~~~~~CP~CR~~~~~~ 159 (172)
+..--.||.|+.++...
T Consensus 5 LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 5 LLDILACPICKGPLKLS 21 (69)
T ss_dssp GGGTCCCTTTCCCCEEC
T ss_pred HHhheeCCCCCCcCeEe
Confidence 33334588888776643
No 200
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.67 E-value=13 Score=30.74 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=30.6
Q ss_pred ccccccccccccCceeeeecCCCCcccHHHHHHHHh-----cCCCCcccccCCccCcc
Q 030757 109 SECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLL-----KVAACPTCRTPTTFDRF 161 (172)
Q Consensus 109 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~~~~-----~~~~CP~CR~~~~~~~~ 161 (172)
....||...+..+......-.|.-.||..|+.---. ..-.||.|+.......+
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~ 62 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIM 62 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCchh
Confidence 345588877643322222225677799999852211 22459999876554433
No 201
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.35 E-value=35 Score=20.35 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=23.1
Q ss_pred CCcccccccccccccCceeeeecCC-CCcccHHHHHHH
Q 030757 106 GFESECVVCLEGFKQGQWCRKLVGC-GHVFHRKCLDTW 142 (172)
Q Consensus 106 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~~ 142 (172)
++..-|.||.++-. ++-+ .| +-+||..|..+.
T Consensus 6 ee~pWC~ICneDAt----lrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----LRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC----EEET-TTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe----EEec-CCCCceehHHHHHHH
Confidence 34567999998722 3444 78 788999998775
No 202
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.53 E-value=1.1e+02 Score=17.33 Aligned_cols=13 Identities=0% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 030757 37 LKVIIMTLITSMF 49 (172)
Q Consensus 37 ~~~ii~~~~~~i~ 49 (172)
++++++.++..++
T Consensus 12 ~wiIi~svl~GLl 24 (54)
T 2knc_A 12 IWWVLVGVLGGLL 24 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 203
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.04 E-value=4 Score=19.03 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=7.6
Q ss_pred cccHHHHHHHH
Q 030757 133 VFHRKCLDTWL 143 (172)
Q Consensus 133 ~fh~~Ci~~~~ 143 (172)
.||+.|-++|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 36777777775
No 204
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.41 E-value=30 Score=20.60 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=16.2
Q ss_pred CcccHHHHHHHHh--cCCCCcccccCCc
Q 030757 132 HVFHRKCLDTWLL--KVAACPTCRTPTT 157 (172)
Q Consensus 132 H~fh~~Ci~~~~~--~~~~CP~CR~~~~ 157 (172)
..||..|+..-.. ..-.||.|+....
T Consensus 30 ~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred cCCcccccccCcCCCCCEECCCCCcccc
Confidence 5799999973211 1123999976543
No 205
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.94 E-value=70 Score=20.83 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=12.0
Q ss_pred CcccHHHHHHHHhcCCCCcccccCCc
Q 030757 132 HVFHRKCLDTWLLKVAACPTCRTPTT 157 (172)
Q Consensus 132 H~fh~~Ci~~~~~~~~~CP~CR~~~~ 157 (172)
..||..|..+.......|..|...+.
T Consensus 52 ~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 52 RKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp EEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred EEeecCchhhhCCCccChhhcCCccC
Confidence 34555555443332224555555544
No 206
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.29 E-value=5.1 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=6.5
Q ss_pred cccccccccccc
Q 030757 109 SECVVCLEGFKQ 120 (172)
Q Consensus 109 ~~C~ICl~~~~~ 120 (172)
..|+.|..++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 346666655443
Done!