BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030758
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICK
HKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEID
LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG

High Scoring Gene Products

Symbol, full name Information P value
NdhL
NADH dehydrogenase-like complex L 		protein from Arabidopsis thaliana 7.6e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030758
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2013925 - symbol:NdhL "NADH dehydrogenase-like...   283  7.6e-25   1


>TAIR|locus:2013925 [details] [associations]
            symbol:NdhL "NADH dehydrogenase-like complex L"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016655 "oxidoreductase activity, acting on
            NAD(P)H, quinone or similar compound as acceptor" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=TAS]
            [GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)"
            evidence=ISS;NAS] [GO:0042651 "thylakoid membrane" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
            metal ion transport" evidence=RCA] InterPro:IPR019654 Pfam:PF10716
            EMBL:CP002684 EMBL:AC011663 GO:GO:0016655 GO:GO:0042651
            GO:GO:0009773 GO:GO:0010598 EMBL:BT010638 IPI:IPI00522356
            RefSeq:NP_177233.1 UniGene:At.48357 UniGene:At.70098 STRING:Q9CAC5
            PRIDE:Q9CAC5 EnsemblPlants:AT1G70760.1 GeneID:843413
            KEGG:ath:AT1G70760 TAIR:At1g70760 HOGENOM:HOG000090274
            InParanoid:Q9CAC5 OMA:LWAPFLN PhylomeDB:Q9CAC5
            ProtClustDB:CLSN2682807 Genevestigator:Q9CAC5 Uniprot:Q9CAC5
        Length = 191

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 65/127 (51%), Positives = 82/127 (64%)

Query:    31 SFGIHSLKALPSLS-STRCVTKSSPLCIICKHKPN-TKPAKLNKKLTGTTQKAIDCFDEK 88
             S G+++  ALPSLS   R V   SP CI    KPN T    +NK       KA D    K
Sbjct:     6 SLGLYAPNALPSLSLKPRSV--KSPFCITSHTKPNDTLLHNVNKMRA----KACDILGAK 59

Query:    89 KSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLR 148
             K+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLR
Sbjct:    60 KTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLR 117

Query:   149 VRWYKRK 155
             VRWY+RK
Sbjct:   118 VRWYRRK 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       144   0.00091  102 3  11 22  0.42    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.83u 0.20s 15.03t   Elapsed:  00:00:00
  Total cpu time:  14.83u 0.20s 15.03t   Elapsed:  00:00:00
  Start:  Thu May  9 19:31:08 2013   End:  Thu May  9 19:31:08 2013

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