BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030758
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7V2B1|NDHL_PROMP NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=ndhL PE=3
SV=1
Length = 77
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
VGI++ Y L++P I+ W+ RW FE + + VF+FFPG
Sbjct: 16 VGIVSI-YLLVIPLILFYWMNNRWNVMGKFERLIVYGLVFLFFPG 59
>sp|Q8DKZ3|NDHL_THEEB NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus
elongatus (strain BP-1) GN=ndhL PE=1 SV=1
Length = 76
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 129 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
G +A Y L++P I+ +L RWY FE + V FFPG
Sbjct: 14 GALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPG 57
>sp|P27372|NDHL_SYNY3 NAD(P)H-quinone oxidoreductase subunit L OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ndhL PE=1 SV=1
Length = 80
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 123 VALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
+A+I +G+ + Y L+ P ++ +L+ RWY E V + VF+FFPG
Sbjct: 15 LAIIYLGL-SLAYLLVFPALLYWYLQKRWYVASSVERLVMYFLVFLFFPG 63
>sp|Q3AYG7|NDHL_SYNS9 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9902) GN=ndhL PE=3 SV=1
Length = 83
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 124 ALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
L+ G + Y + +P + W+ +RWY+ FE + VF+FFPG
Sbjct: 17 VLLAYGAVLGTYLIAVPLALYAWINLRWYRMSKFERLGVYGLVFLFFPG 65
>sp|P0C8E5|NDHL_PROM4 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9211) GN=ndhL PE=3 SV=1
Length = 84
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 129 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFP 171
GII F Y +++P + W+ +RW FE + VF+FFP
Sbjct: 17 GIIGFLYLVVIPLFLYFWMNIRWNFMNKFERLCLYGLVFLFFP 59
>sp|Q7V897|NDHL_PROMM NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9313) GN=ndhL PE=3 SV=2
Length = 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y +++P ++ +W+ RW+ FE + VF+FFPG
Sbjct: 28 YLIVVPLLLYSWMNRRWHCMGKFERLSAYGLVFLFFPG 65
>sp|B2J0I9|NDHL_NOSP7 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=ndhL PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
+ VAL+ + I+A Y L++P ++ +L+ RWY E + + VF FFPG
Sbjct: 1 MIVALLYL-ILAGAYLLVIPIAVLFYLKQRWYVASSIERLLMYFLVFFFFPG 51
>sp|Q8YMW5|NDHL_NOSS1 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ndhL PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y L++P ++ +L++RWY E + VF+FFPG
Sbjct: 14 YLLVVPVALLFYLKLRWYVVSSIERTFMYFLVFLFFPG 51
>sp|C1DCA5|NUOC_LARHH NADH-quinone oxidoreductase subunit C OS=Laribacter hongkongensis
(strain HLHK9) GN=nuoC PE=3 SV=1
Length = 195
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 136 FLIMPPIIMNWLRVRWYKRKLFEMY 160
F ++P +I W V WY+R+ F+MY
Sbjct: 102 FPVVPSLIDVWASVNWYEREAFDMY 126
>sp|A2CAP6|NDHL_PROM3 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9303) GN=ndhL PE=3 SV=2
Length = 83
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y +++P ++ +W+ RW+ FE + VF+FFPG
Sbjct: 28 YLIVVPLLLYSWMNRRWHCMGKFERLSAYGMVFLFFPG 65
>sp|Q3MBD4|NDHL_ANAVT NAD(P)H-quinone oxidoreductase subunit L OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ndhL PE=3 SV=1
Length = 70
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y L++P +M +L+ RWY E + VF+FFPG
Sbjct: 14 YLLVVPVALMFYLKQRWYVVSSVERTFMYFLVFLFFPG 51
>sp|A2BQ51|NDHL_PROMS NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain AS9601) GN=ndhL PE=3 SV=1
Length = 77
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
+GII F Y L++P ++ W+ RW FE + VF+FFPG
Sbjct: 16 IGII-FTYLLVIPLLLFYWMNNRWNIMGKFERLGIYGLVFLFFPG 59
>sp|A3PBU4|NDHL_PROM0 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9301) GN=ndhL PE=3 SV=1
Length = 77
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
+GII+ Y L++P ++ W+ RW FE + VF+FFPG
Sbjct: 16 IGIIST-YLLVIPLLLFYWMNNRWNIMGKFERLGIYGLVFLFFPG 59
>sp|B1X3F0|NDHL_PAUCH NAD(P)H-quinone oxidoreductase subunit L, organellar chromatophore
OS=Paulinella chromatophora GN=ndhL PE=3 SV=1
Length = 83
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 125 LIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
L+ G++ Y +++P + W+ RWY E + VF+FFPG
Sbjct: 18 LLAYGVLGGLYLILVPLALYWWMNRRWYIMGKIERLFVYGLVFLFFPG 65
>sp|Q0I8V6|NDHL_SYNS3 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9311) GN=ndhL PE=3 SV=1
Length = 83
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y ++MP ++ W+ RW+ E + + VF FFPG
Sbjct: 28 YLVVMPLLLFFWMNWRWHVMGKIERFSVYGLVFFFFPG 65
>sp|Q8KX34|NDHL_SYNP2 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhL PE=3 SV=1
Length = 77
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y L++P + +L RWY E V + FVF FPG
Sbjct: 23 YLLVLPAGLYFYLNNRWYVASSIERLVMYFFVFFLFPG 60
>sp|Q31BW4|NDHL_PROM9 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9312) GN=ndhL PE=3 SV=1
Length = 77
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
Y L++P ++ W+ RW+ +E + VF+FFPG
Sbjct: 22 YLLVIPLLLFYWMNNRWHVMGKYERLGIYGLVFLFFPG 59
>sp|P0C8E6|NDHL_PROM2 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9215) GN=ndhL PE=3 SV=1
Length = 77
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
+GII+ Y L++P + W+ RW FE + VF+FFPG
Sbjct: 16 IGIIST-YLLVIPLFLFYWMNNRWNVMGKFERLGIYGLVFLFFPG 59
>sp|A2BVN3|NDHL_PROM5 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9515) GN=ndhL PE=3 SV=1
Length = 77
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
VGII+ Y ++P I+ W+ RW E + VF+FFPG
Sbjct: 16 VGIISI-YLFVIPLILFYWMNNRWNVMGKLERLGVYGLVFLFFPG 59
>sp|Q75AW7|PFA3_ASHGO Palmitoyltransferase PFA3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PFA3 PE=3 SV=2
Length = 325
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 113 GENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYV 161
G NNH+ L L+ + AFW +I ++ W R Y+R+L +++
Sbjct: 142 GYNNHKFFLHF-LLYASVYAFWICIITTWDLVVWFRAHSYERELLNVHL 189
>sp|Q3AKY6|NDHL_SYNSC NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9605) GN=ndhL PE=3 SV=1
Length = 83
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 120 DLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
D + L+ ++ Y +++P + W+ RW++ E + VF FFPG
Sbjct: 13 DTLLVLLAYTVLGGLYLVVVPLALYAWMNQRWHRMGKLERLGIYGMVFFFFPG 65
>sp|Q142H1|NUOC_BURXL NADH-quinone oxidoreductase subunit C OS=Burkholderia xenovorans
(strain LB400) GN=nuoC PE=3 SV=1
Length = 200
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 138 IMPPIIMNWLRVRWYKRKLFEMY 160
I+P ++ W V WY+R+ F++Y
Sbjct: 106 ILPSVVEIWNSVNWYEREAFDLY 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,839,396
Number of Sequences: 539616
Number of extensions: 2185237
Number of successful extensions: 8034
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7985
Number of HSP's gapped (non-prelim): 50
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)