Query 030758
Match_columns 172
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 04:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10716 NdhL: NADH dehydrogen 100.0 2.1E-30 4.5E-35 191.0 6.2 65 94-172 1-65 (81)
2 PRK13455 F0F1 ATP synthase sub 79.5 5.4 0.00012 31.5 5.4 51 100-150 7-59 (184)
3 PF08560 DUF1757: Protein of u 66.6 16 0.00034 29.6 5.3 62 92-155 33-104 (155)
4 PF01102 Glycophorin_A: Glycop 61.2 17 0.00036 28.7 4.4 26 123-150 66-91 (122)
5 PRK08475 F0F1 ATP synthase sub 60.4 21 0.00045 28.3 4.9 48 102-150 6-54 (167)
6 PRK14475 F0F1 ATP synthase sub 60.0 25 0.00053 27.6 5.1 38 112-150 3-42 (167)
7 PF05232 BTP: Bacterial Transm 57.5 22 0.00047 25.0 4.0 55 90-154 9-64 (67)
8 PF06550 DUF1119: Protein of u 53.9 31 0.00067 31.0 5.3 65 92-163 5-71 (283)
9 COG4669 EscJ Type III secretor 50.6 23 0.0005 31.3 4.0 93 52-150 147-244 (246)
10 PRK06568 F0F1 ATP synthase sub 48.8 41 0.00089 27.2 4.8 36 116-151 2-37 (154)
11 PRK13275 mtrF tetrahydromethan 46.4 39 0.00085 24.6 4.0 27 121-147 40-66 (67)
12 TIGR01478 STEVOR variant surfa 44.3 26 0.00057 31.7 3.4 20 131-150 266-285 (295)
13 PTZ00370 STEVOR; Provisional 44.0 27 0.00058 31.7 3.4 20 131-150 262-281 (296)
14 PRK09173 F0F1 ATP synthase sub 41.4 61 0.0013 24.9 4.6 32 119-150 2-34 (159)
15 PLN00077 photosystem II reacti 41.3 38 0.00083 27.6 3.6 11 102-112 65-75 (128)
16 PF07123 PsbW: Photosystem II 40.7 31 0.00067 28.3 3.0 34 104-137 78-123 (138)
17 PF15050 SCIMP: SCIMP protein 40.5 27 0.00059 28.6 2.7 16 32-49 61-76 (133)
18 PLN02755 complex I subunit 39.3 17 0.00038 26.9 1.3 20 129-148 34-53 (71)
19 PRK10921 twin-arginine protein 39.2 44 0.00094 28.6 3.8 46 121-166 112-160 (258)
20 PF10063 DUF2301: Uncharacteri 38.3 67 0.0015 26.0 4.6 39 116-154 45-98 (135)
21 PF09991 DUF2232: Predicted me 35.8 55 0.0012 26.1 3.7 43 126-170 234-276 (290)
22 PLN00092 photosystem I reactio 33.1 51 0.0011 27.1 3.1 10 103-112 76-85 (137)
23 PHA02974 putative IMV membrane 32.8 67 0.0014 24.4 3.5 49 123-172 14-64 (81)
24 TIGR00945 tatC Twin arginine t 32.3 1.1E+02 0.0024 25.1 5.0 46 121-166 101-149 (215)
25 CHL00182 tatC Sec-independent 32.2 62 0.0014 27.6 3.7 47 121-167 122-171 (249)
26 PF08019 DUF1705: Domain of un 32.0 98 0.0021 23.9 4.4 34 116-149 55-88 (156)
27 PF04235 DUF418: Protein of un 31.7 94 0.002 23.5 4.2 21 141-161 136-156 (163)
28 PF09472 MtrF: Tetrahydrometha 31.3 62 0.0014 23.3 3.0 23 123-145 42-64 (64)
29 TIGR02507 MtrF tetrahydrometha 30.9 84 0.0018 22.9 3.6 25 121-145 40-64 (65)
30 PF14378 PAP2_3: PAP2 superfam 30.4 1.7E+02 0.0036 22.8 5.5 22 150-171 61-82 (191)
31 PF09624 DUF2393: Protein of u 30.1 96 0.0021 23.5 4.0 29 124-152 18-46 (149)
32 PF05934 MCLC: Mid-1-related c 29.9 1E+02 0.0022 30.3 5.0 28 138-167 194-221 (549)
33 PF04144 SCAMP: SCAMP family; 29.8 48 0.001 26.7 2.5 37 129-165 68-104 (177)
34 TIGR01167 LPXTG_anchor LPXTG-m 29.1 86 0.0019 18.2 2.9 6 109-114 2-7 (34)
35 PRK09174 F0F1 ATP synthase sub 26.4 1.5E+02 0.0032 24.6 4.8 32 118-150 53-85 (204)
36 PRK10801 colicin uptake protei 25.9 1.5E+02 0.0033 24.9 4.9 54 96-152 140-197 (227)
37 PF02009 Rifin_STEVOR: Rifin/s 25.7 2E+02 0.0043 25.7 5.8 41 121-164 253-294 (299)
38 TIGR01912 TatC-Arch Twin argin 25.1 71 0.0015 26.9 2.8 47 121-167 109-159 (237)
39 PF03904 DUF334: Domain of unk 25.1 1.3E+02 0.0029 26.5 4.5 35 117-151 192-228 (230)
40 PF05198 IF3_N: Translation in 24.9 40 0.00086 24.2 1.1 23 3-25 51-74 (76)
41 PRK01026 tetrahydromethanopter 24.8 1.5E+02 0.0032 22.3 4.1 22 124-145 50-71 (77)
42 PLN00082 photosystem II reacti 23.4 50 0.0011 24.4 1.4 10 102-111 4-13 (67)
43 COG0811 TolQ Biopolymer transp 23.0 2.1E+02 0.0045 23.6 5.1 37 124-160 163-201 (216)
44 KOG0721 Molecular chaperone (D 22.8 51 0.0011 29.1 1.5 40 107-158 180-219 (230)
45 COG5409 EXS domain-containing 22.5 55 0.0012 30.8 1.8 49 118-168 114-163 (384)
46 PRK12361 hypothetical protein; 22.2 1.4E+02 0.003 27.4 4.2 62 89-154 6-88 (547)
47 PF10821 DUF2567: Protein of u 22.1 3.9E+02 0.0084 22.3 6.5 57 92-151 5-72 (167)
48 PRK10414 biopolymer transport 21.5 1.8E+02 0.0039 24.9 4.6 53 96-151 146-202 (244)
49 PF01010 Oxidored_q1_C: NADH-U 21.2 9.3 0.0002 32.5 -3.2 42 123-164 161-230 (242)
50 PF12292 DUF3624: Protein of u 21.2 2.7E+02 0.006 20.9 4.9 35 116-150 42-76 (77)
51 COG2194 Predicted membrane-ass 21.2 1.9E+02 0.0041 27.8 5.1 35 116-150 106-140 (555)
52 PF14163 SieB: Superinfection 21.1 3.8E+02 0.0083 20.4 6.0 71 91-163 4-75 (151)
53 PF10204 DuoxA: Dual oxidase m 20.9 86 0.0019 28.1 2.6 25 118-142 13-37 (281)
54 TIGR01149 mtrG N5-methyltetrah 20.6 1.5E+02 0.0032 22.1 3.3 21 124-144 47-67 (70)
55 KOG0812 SNARE protein SED5/Syn 20.4 44 0.00095 30.6 0.7 23 148-170 287-309 (311)
56 PF09971 DUF2206: Predicted me 20.2 1.3E+02 0.0029 27.1 3.7 81 87-170 148-231 (367)
57 PF06695 Sm_multidrug_ex: Puta 20.0 4E+02 0.0086 20.3 5.7 16 153-168 65-80 (121)
No 1
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=99.96 E-value=2.1e-30 Score=191.00 Aligned_cols=65 Identities=35% Similarity=0.791 Sum_probs=61.6
Q ss_pred hhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHhhheeeecCC
Q 030758 94 IQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172 (172)
Q Consensus 94 lq~ga~~lA~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FFPG 172 (172)
.||||++ +++ ++|+++|+++|++++++||+|+|+++|+|||+|||+||++||++||||||+||||
T Consensus 1 m~~~~l~-~~i-------------~~~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPG 65 (81)
T PF10716_consen 1 MQCGALL-SSI-------------PSDTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPG 65 (81)
T ss_pred CcHHHHH-HHc-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3789999 544 8999999999999999999999999999999999999999999999999999998
No 2
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=79.47 E-value=5.4 Score=31.54 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHhhcCCceeeecccCC-chhHHHHHHHHHHHHH-HHHHhHhHHHHHHHHHH
Q 030758 100 LLATLEQPALAVTGENNH-EIDLTVALIKVGIIAF-WYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 100 ~lA~~e~PAlAvtg~~n~-~~dtl~Vll~Y~~La~-~YLLVvP~iiy~wLn~R 150 (172)
++.....||+|-+|.-.. +.-.++..+.++++.+ ++.++.|+.+..+|..|
T Consensus 7 ~~~~~~~~~~~~~g~~~~~~~t~~~~~inflil~~iL~~f~~~~~v~~~L~~R 59 (184)
T PRK13455 7 LAALAASPALAAGGPFFSLSNTDFVVTLAFLLFIGILVYFKVPGMIGGMLDKR 59 (184)
T ss_pred HHHHccchHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334555668888775211 2223344455555544 34445687788888777
No 3
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=66.55 E-value=16 Score=29.60 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHhhcCCce-eeecccCCchhHHHH---HHHHHHHHHHHHHhHhHHHHHHHHH------HHHhhh
Q 030758 92 LGIQAGAVLLATLEQPAL-AVTGENNHEIDLTVA---LIKVGIIAFWYFLIMPPIIMNWLRV------RWYKRK 155 (172)
Q Consensus 92 lalq~ga~~lA~~e~PAl-Avtg~~n~~~dtl~V---ll~Y~~La~~YLLVvP~iiy~wLn~------RWYv~~ 155 (172)
-++|+|+++=+.+.+|.. +....+.+++++.-- ...+++++| +++.|.+.|..|+. .|+.|.
T Consensus 33 k~~q~gs~lGsl~~~Pi~~~~~~~~~~~~~~~~~~~~~~~~G~l~G--~~~gp~m~~~rmr~~~~~~~e~~DR~ 104 (155)
T PF08560_consen 33 KGAQAGSFLGSLIVGPIYRLLKQPRLNPKELTNRFVKGGRNGALAG--AVLGPVMTYARMRGSSLEEIELQDRC 104 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCccccHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhccccchHHHHHHH
Confidence 368999999555558854 455553245555543 444554444 57889999999988 677664
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.19 E-value=17 Score=28.70 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 030758 123 VALIKVGIIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 123 ~Vll~Y~~La~~YLLVvP~iiy~wLn~R 150 (172)
++++.+++++|.-+++ ++|+|++++|
T Consensus 66 i~~Ii~gv~aGvIg~I--lli~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII--LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH--HHHHHHHHHH
Confidence 4667777777775544 4666666655
No 5
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=60.44 E-value=21 Score=28.27 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=25.1
Q ss_pred HhhcCCceeeecccCCchhHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHH
Q 030758 102 ATLEQPALAVTGENNHEIDLTVALIKVGIIAFW-YFLIMPPIIMNWLRVR 150 (172)
Q Consensus 102 A~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~-YLLVvP~iiy~wLn~R 150 (172)
+....+|+|-+|+--++.|.++.++.++++.++ +.++.+| +...|..|
T Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kP-i~~~l~~R 54 (167)
T PRK08475 6 LLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKP-LKNFYKSR 54 (167)
T ss_pred HHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333444555566532336677766666655443 3344444 45566655
No 6
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=60.00 E-value=25 Score=27.58 Aligned_cols=38 Identities=11% Similarity=-0.164 Sum_probs=24.4
Q ss_pred ecccCCchhHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHH
Q 030758 112 TGENNHEIDLTVALIKVGIIAF--WYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 112 tg~~n~~~dtl~Vll~Y~~La~--~YLLVvP~iiy~wLn~R 150 (172)
||. +.++..+|.++.++++.+ +|+.+.+.-|...|..|
T Consensus 3 ~~~-~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R 42 (167)
T PRK14475 3 SFF-NLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAY 42 (167)
T ss_pred CCC-CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455 556677787777777665 34555566666667665
No 7
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=57.54 E-value=22 Score=24.96 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=38.6
Q ss_pred hhhhhhHHHHHHHhhcCCcee-eecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh
Q 030758 90 SSLGIQAGAVLLATLEQPALA-VTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKR 154 (172)
Q Consensus 90 ~~lalq~ga~~lA~~e~PAlA-vtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv~ 154 (172)
.++.-+.|+++ +-.|.++ ++|. ...+...+.+...+++..|= .+|||+-.||..+
T Consensus 9 hai~FE~~~l~---~~~P~~a~~~~~--~~~~a~~l~v~~s~~a~~wn-----~ifN~~FD~~~~r 64 (67)
T PF05232_consen 9 HAILFEVGALL---ISVPLIAWWLGI--SLWQAGALDVGLSLFAMVWN-----YIFNWLFDKIEPR 64 (67)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcc
Confidence 35667888887 4568777 5777 56677776666666666664 5789988888654
No 8
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=53.93 E-value=31 Score=31.04 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH--HHHhhhhHHHHHHh
Q 030758 92 LGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV--RWYKRKLFEMYVQF 163 (172)
Q Consensus 92 lalq~ga~~lA~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~--RWYv~~~~ER~~mY 163 (172)
++.|+||++|+..=..+=--.-| +|+|.+.-+. |.+. .+++..++...++. +|-.+.-+.=...+
T Consensus 5 l~vql~Al~L~~~~~~~~~~a~e--dP~~~~Nsl~-YI~~----iL~fT~~mL~~ik~~~~~~I~~ii~~~i~~ 71 (283)
T PF06550_consen 5 LIVQLGALLLVPPFEEAGYQAFE--DPSSPSNSLY-YIIA----ILVFTAFMLLAIKYGKKWIIRLIIYLAIFL 71 (283)
T ss_pred HHHHHHHHHHcCchhhcCCeeec--CCCCchHHHH-HHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67899999865421111001123 4444444332 4333 24455444444443 57666665554443
No 9
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=50.60 E-value=23 Score=31.34 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCCeeEeeecCCCCCcccchhhhhcccccccCcccccchhhhhhHHHHHHHhhcCCceeeec-ccCCchhH----HHHHH
Q 030758 52 SSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTG-ENNHEIDL----TVALI 126 (172)
Q Consensus 52 ~~~l~i~sk~Kpn~~~~kl~~~i~~~~~k~~d~~~~kk~~lalq~ga~~lA~~e~PAlAvtg-~~n~~~dt----l~Vll 126 (172)
++|.|| ||.|....+-.+-+|+..-..+.+..+-.+-+.+++=++----+ +.+..+ |++....| -..++
T Consensus 147 saSVfI--ky~~~~nl~~~v~~IK~LV~nSv~gL~YenISVVl~~~~~~~~~----~~~~~~~~~~~~~~w~~~~~~~~~ 220 (246)
T COG4669 147 SASVFI--KYSPDVNLSIYVSQIKRLVANSVPGLQYENISVVLVPASDSDPA----IPGPRALEPVFAVQWAMLLAGLLL 220 (246)
T ss_pred eeEEEE--EecCCCChhHhHHHHHHHHHhccCCCchhceEEEEeeccccccc----ccCccccCCceeEEEEeechhHHH
Confidence 455555 66672212233445566666666666666666666543322011 111222 11122222 23355
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
Q 030758 127 KVGIIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 127 ~Y~~La~~YLLVvP~iiy~wLn~R 150 (172)
..+.+++++|.+.=+++++|+++|
T Consensus 221 ~~~~l~~~~l~~~~~~~~~~l~~~ 244 (246)
T COG4669 221 LLFGLAFWLLIVLMFILSFGLRRR 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 677889999999999999999876
No 10
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=48.85 E-value=41 Score=27.17 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 030758 116 NHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRW 151 (172)
Q Consensus 116 n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RW 151 (172)
|.-++.+|+++.++++.++.--..+.-|+..|..|=
T Consensus 2 ~~~~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~ 37 (154)
T PRK06568 2 NFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKI 37 (154)
T ss_pred CchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788899999998888877777888899998873
No 11
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=46.44 E-value=39 Score=24.59 Aligned_cols=27 Identities=11% Similarity=0.445 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWL 147 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wL 147 (172)
+-.+..+++.+.-+-|+++|++++..+
T Consensus 40 ~~~~G~aiG~~~AlvLv~ip~~l~~~~ 66 (67)
T PRK13275 40 TGIIGFAIGFLLALLLVVVPPLLYGLV 66 (67)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888888889999988754
No 12
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=44.29 E-value=26 Score=31.73 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q 030758 131 IAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 131 La~~YLLVvP~iiy~wLn~R 150 (172)
|..+-|.|+=.|+|.||.+|
T Consensus 266 lvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445567778889999887
No 13
>PTZ00370 STEVOR; Provisional
Probab=44.04 E-value=27 Score=31.69 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=14.4
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q 030758 131 IAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 131 La~~YLLVvP~iiy~wLn~R 150 (172)
|..+-|.|+=.|+|.||.+|
T Consensus 262 lvllil~vvliilYiwlyrr 281 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445567778889999887
No 14
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=41.36 E-value=61 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHH-HHhHhHHHHHHHHHH
Q 030758 119 IDLTVALIKVGIIAFWY-FLIMPPIIMNWLRVR 150 (172)
Q Consensus 119 ~dtl~Vll~Y~~La~~Y-LLVvP~iiy~wLn~R 150 (172)
++++|.++.++++.++. .+..|--+...|..|
T Consensus 2 ~~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R 34 (159)
T PRK09173 2 DATFWAFVGLVLFLALVVYLKVPGMIARSLDAR 34 (159)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666666555442 233566677777776
No 15
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=41.34 E-value=38 Score=27.57 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=8.5
Q ss_pred HhhcCCceeee
Q 030758 102 ATLEQPALAVT 112 (172)
Q Consensus 102 A~~e~PAlAvt 112 (172)
++..+||+|+.
T Consensus 65 ~a~a~PA~AlV 75 (128)
T PLN00077 65 MAYAHPAFALV 75 (128)
T ss_pred HhccccHHHHH
Confidence 56689999963
No 16
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=40.69 E-value=31 Score=28.28 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=17.8
Q ss_pred hcCCceeeeccc------------CCchhHHHHHHHHHHHHHHHHH
Q 030758 104 LEQPALAVTGEN------------NHEIDLTVALIKVGIIAFWYFL 137 (172)
Q Consensus 104 ~e~PAlAvtg~~------------n~~~dtl~Vll~Y~~La~~YLL 137 (172)
..+||+|+.-|. |+..-.++.++.++.+-.+|++
T Consensus 78 ~a~PA~ALVDeRlsteGTGL~lGlsn~~LgwIL~gVf~lIWslY~~ 123 (138)
T PF07123_consen 78 TASPALALVDERLSTEGTGLPLGLSNNLLGWILLGVFGLIWSLYFV 123 (138)
T ss_pred hcCcHHHHHHHHhcCCCccccccccCchhHHHHHHHHHHHHHHHHh
Confidence 388999963221 3333334444455555555553
No 17
>PF15050 SCIMP: SCIMP protein
Probab=40.51 E-value=27 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.073 Sum_probs=12.2
Q ss_pred eeccccCcCCCCCCCccc
Q 030758 32 FGIHSLKALPSLSSTRCV 49 (172)
Q Consensus 32 ~~l~~pkALP~l~s~~~~ 49 (172)
..-+.|-+||+||. |+
T Consensus 61 v~n~~~~~LPpLPP--Rg 76 (133)
T PF15050_consen 61 VLNQSPVQLPPLPP--RG 76 (133)
T ss_pred hhcCCcCCCCCCCC--CC
Confidence 34567889999988 54
No 18
>PLN02755 complex I subunit
Probab=39.31 E-value=17 Score=26.90 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHhHHHHHHHH
Q 030758 129 GIIAFWYFLIMPPIIMNWLR 148 (172)
Q Consensus 129 ~~La~~YLLVvP~iiy~wLn 148 (172)
+.++++|-++||.++|.=.-
T Consensus 34 ~~i~~ifgv~VP~liy~giv 53 (71)
T PLN02755 34 LAVVGIFGIAVPILVYKGIV 53 (71)
T ss_pred hhhhhhhhhhhhHHhhhhhh
Confidence 57889999999999986543
No 19
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=39.20 E-value=44 Score=28.58 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH---hhhhHHHHHHhhhe
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWY---KRKLFEMYVQFMFV 166 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWY---v~~~~ER~~mY~LV 166 (172)
...+++-++++++.|++|+|.++-+-++-.-- ..-+++.|+.|.+.
T Consensus 112 ~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~ 160 (258)
T PRK10921 112 VSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMA 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHH
Confidence 44567788889999999999998877754211 22356666655443
No 20
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=38.26 E-value=67 Score=25.99 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHHHHHHHH---------------HhHhHHHHHHHHHHHHhh
Q 030758 116 NHEIDLTVALIKVGIIAFWYF---------------LIMPPIIMNWLRVRWYKR 154 (172)
Q Consensus 116 n~~~dtl~Vll~Y~~La~~YL---------------LVvP~iiy~wLn~RWYv~ 154 (172)
|+|...+.+...+++++|+|+ +++|..+.-.+-.-|...
T Consensus 45 ~~P~~~l~vG~~FaaLtGi~fKE~FCF~~~e~~~l~~llp~llLghl~g~~~~~ 98 (135)
T PF10063_consen 45 GQPLWLLAVGPLFAALTGIAFKEYFCFRRPEAKLLTFLLPLLLLGHLFGLLPAS 98 (135)
T ss_pred cCccHHHHHHHHHHHHHhHHhhchhhhhhHHHhhHHHHHHHHHHHHHHCCCcHH
Confidence 678889999999999999986 566666665555444433
No 21
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=35.77 E-value=55 Score=26.10 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHhhheeeec
Q 030758 126 IKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFF 170 (172)
Q Consensus 126 l~Y~~La~~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FF 170 (172)
-...++.++|++--=.++.+|+++| +.+.+=|.+.|.+++++.
T Consensus 234 Nl~~v~~~l~~~qGla~~~~~~~~~--~~~~~~~~l~~~~~i~~~ 276 (290)
T PF09991_consen 234 NLLIVLSFLFFIQGLAVIHFFLKRR--KMSKFLRVLLYILLILFP 276 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHH
Confidence 4455666677766666666677666 777777888888877654
No 22
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=33.10 E-value=51 Score=27.13 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.2
Q ss_pred hhcCCceeee
Q 030758 103 TLEQPALAVT 112 (172)
Q Consensus 103 ~~e~PAlAvt 112 (172)
+..+||+|+.
T Consensus 76 ~~a~PA~AlV 85 (137)
T PLN00092 76 MSASPAMALV 85 (137)
T ss_pred hhcCcHHHHH
Confidence 3369999963
No 23
>PHA02974 putative IMV membrane protein; Provisional
Probab=32.83 E-value=67 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHhhhhHHHHHHhhheeeecCC
Q 030758 123 VALIKVGIIAFWYFLI--MPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172 (172)
Q Consensus 123 ~Vll~Y~~La~~YLLV--vP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FFPG 172 (172)
.++....+++|.=|++ +|| .+-.+-+|=...+++=|.+=|.-.++|.||
T Consensus 14 TlL~llMiisG~aLi~k~~~P-~~~~v~~ss~tf~rvv~~lE~vailifiPG 64 (81)
T PHA02974 14 TILVVLLIISGFSLILRLIPG-VYSSVIRSSFTAGKILRFMEIFSTIMFIPG 64 (81)
T ss_pred HHHHHHHHHhChHHHHhhcCc-hhhhhhhHHHHHHHHHHHHHHHHHhheecc
Confidence 3444455566655554 444 334555666677888999999999999998
No 24
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=32.32 E-value=1.1e+02 Score=25.14 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH---hhhhHHHHHHhhhe
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWY---KRKLFEMYVQFMFV 166 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWY---v~~~~ER~~mY~LV 166 (172)
...+++-++++++.|.+++|.++-+-++-.-- ..-+++.|+.|.+.
T Consensus 101 ~~~~~lF~~G~~f~y~~vlP~~~~F~~~~~~~~~~~~~~i~~y~~f~~~ 149 (215)
T TIGR00945 101 LGSILLFLAGLAFAYYVLFPAALNFLLTYGADVVEILLSIDQYFEFVLK 149 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 33556677888899999999998887754221 22246666655543
No 25
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=32.17 E-value=62 Score=27.57 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH---hhhhHHHHHHhhhee
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWY---KRKLFEMYVQFMFVF 167 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWY---v~~~~ER~~mY~LVF 167 (172)
...+++-+++.++.|.+|+|.++-+-++-.-- ..-++..|+.|.+.+
T Consensus 122 ~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~~~~i~~Yl~f~~~~ 171 (249)
T CHL00182 122 ISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVL 171 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccHHHHHHHHHHH
Confidence 34667778899999999999998877753111 122566666665544
No 26
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=31.99 E-value=98 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 030758 116 NHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149 (172)
Q Consensus 116 n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~ 149 (172)
.+.+|....+-...++-++.+.++|.++.+|.+.
T Consensus 55 Tn~~Ea~ells~~~~~~~l~~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 55 TNTAEASELLSWKLILWLLLLGVLPALLLWRVRI 88 (156)
T ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777788888899999999888887755
No 27
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=31.74 E-value=94 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.484 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 030758 141 PIIMNWLRVRWYKRKLFEMYV 161 (172)
Q Consensus 141 ~iiy~wLn~RWYv~~~~ER~~ 161 (172)
.+++.+++.|++++|-+|.+.
T Consensus 136 q~~~s~~W~~~f~~GPlE~l~ 156 (163)
T PF04235_consen 136 QLLFSYLWLRRFRRGPLEWLW 156 (163)
T ss_pred HHHHHHHHHHhcCcCcHHHHH
Confidence 466778888999999999764
No 28
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=31.33 E-value=62 Score=23.27 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHH
Q 030758 123 VALIKVGIIAFWYFLIMPPIIMN 145 (172)
Q Consensus 123 ~Vll~Y~~La~~YLLVvP~iiy~ 145 (172)
.+..+++.+..+-|+++|+++|+
T Consensus 42 ~~GfaiG~~~AlvLv~ip~~l~~ 64 (64)
T PF09472_consen 42 IKGFAIGFLFALVLVGIPILLMF 64 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556777777777788877764
No 29
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=30.87 E-value=84 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHH
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMN 145 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~ 145 (172)
+-....+++.+.-+-|+++|+++++
T Consensus 40 ~~~~G~~iG~~~Al~lV~IP~ll~~ 64 (65)
T TIGR02507 40 TTITGLAYGFLFAVLLVAVPIAMKF 64 (65)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777778889998875
No 30
>PF14378 PAP2_3: PAP2 superfamily
Probab=30.43 E-value=1.7e+02 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=12.3
Q ss_pred HHHhhhhHHHHHHhhheeeecC
Q 030758 150 RWYKRKLFEMYVQFMFVFMFFP 171 (172)
Q Consensus 150 RWYv~~~~ER~~mY~LVF~FFP 171 (172)
|++.+..+=..+.-++++.+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~P 82 (191)
T PF14378_consen 61 RRFFRALLLALLIGFVIYILFP 82 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444555566666776
No 31
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=30.09 E-value=96 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 030758 124 ALIKVGIIAFWYFLIMPPIIMNWLRVRWY 152 (172)
Q Consensus 124 Vll~Y~~La~~YLLVvP~iiy~wLn~RWY 152 (172)
+++.+.+++++-++.+|.++|.||.+.=+
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 46 (149)
T PF09624_consen 18 LALSFIIASFILAFLIPFFGYYWLDKYLK 46 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 56667777777777899999999987543
No 32
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=29.92 E-value=1e+02 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.421 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHhhhhHHHHHHhhhee
Q 030758 138 IMPPIIMNWLRVRWYKRKLFEMYVQFMFVF 167 (172)
Q Consensus 138 VvP~iiy~wLn~RWYv~~~~ER~~mY~LVF 167 (172)
|+=.+...|...|||.- +-|+|+..|++
T Consensus 194 V~iVAteLwt~V~W~~Q--l~R~fvisFLi 221 (549)
T PF05934_consen 194 VAIVATELWTYVSWFTQ--LRRMFVISFLI 221 (549)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33345789999999876 67776555543
No 33
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=29.83 E-value=48 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHhhh
Q 030758 129 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMF 165 (172)
Q Consensus 129 ~~La~~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~L 165 (172)
.+++.+|+++.+|+-|+---++=|++-.=|+-+-|+.
T Consensus 68 ~~lai~y~~~~~P~sf~~wyrplY~A~r~dss~~f~~ 104 (177)
T PF04144_consen 68 FGLAILYLLLGTPASFFCWYRPLYKAFRTDSSFRFMW 104 (177)
T ss_pred ehHHHHHHHHHhHHHHHHHHHHHHHHHhcccchHHHH
Confidence 3677788655555554433345676666665444433
No 34
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=29.07 E-value=86 Score=18.22 Aligned_cols=6 Identities=67% Similarity=0.850 Sum_probs=3.8
Q ss_pred eeeecc
Q 030758 109 LAVTGE 114 (172)
Q Consensus 109 lAvtg~ 114 (172)
|--||+
T Consensus 2 LP~TG~ 7 (34)
T TIGR01167 2 LPKTGE 7 (34)
T ss_pred CCCCCC
Confidence 345887
No 35
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.36 E-value=1.5e+02 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHH
Q 030758 118 EIDLTVALIKVGIIAFW-YFLIMPPIIMNWLRVR 150 (172)
Q Consensus 118 ~~dtl~Vll~Y~~La~~-YLLVvP~iiy~wLn~R 150 (172)
+.+++|.++.+++|.++ .-++.|+ |...|..|
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~p-I~~vLe~R 85 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPR-IGGIIETR 85 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556666655554443 3446666 55566655
No 36
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=25.85 E-value=1.5e+02 Score=24.87 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCC-ceeeecccCCchhHHHHHHHHHHHHHHH--HHhHhH-HHHHHHHHHHH
Q 030758 96 AGAVLLATLEQP-ALAVTGENNHEIDLTVALIKVGIIAFWY--FLIMPP-IIMNWLRVRWY 152 (172)
Q Consensus 96 ~ga~~lA~~e~P-AlAvtg~~n~~~dtl~Vll~Y~~La~~Y--LLVvP~-iiy~wLn~RWY 152 (172)
+|+|| ..++.= +++.+|. .+...+.-.+.-+.++.+| ++-+|. +.|||++.|=-
T Consensus 140 lGTV~-Gmi~aF~~i~~~g~--~~~~~~a~GI~~ALitTa~GL~vAIPAli~yN~f~~ri~ 197 (227)
T PRK10801 140 FGTVW-GIMHAFIALGAVKQ--ATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVN 197 (227)
T ss_pred HHHHH-HHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 444432 4444553 2333343333333333333 344554 56888888743
No 37
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.71 E-value=2e+02 Score=25.66 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh-hhHHHHHHhh
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKR-KLFEMYVQFM 164 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv~-~~~ER~~mY~ 164 (172)
.+...+.+-+++.+=.++|=+|||+-|| ||| .+...=+||.
T Consensus 253 ~~~t~I~aSiiaIliIVLIMvIIYLILR---YRRKKKmkKKlQYi 294 (299)
T PF02009_consen 253 SLTTAIIASIIAILIIVLIMVIIYLILR---YRRKKKMKKKLQYI 294 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHH
Confidence 3455556666666666666677777766 667 6666666663
No 38
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=25.14 E-value=71 Score=26.92 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH-H---hhhhHHHHHHhhhee
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRW-Y---KRKLFEMYVQFMFVF 167 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~RW-Y---v~~~~ER~~mY~LVF 167 (172)
...+++-+++.++.|.+|+|.++-+-++--- . ..-+++.|+.|.+.+
T Consensus 109 ~~~~~lF~~G~~f~y~~vlP~~~~f~~~f~~~~~~~~~~~i~~Y~~f~~~~ 159 (237)
T TIGR01912 109 VIAVGLFAFGALFAYWVIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKL 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccceeecHHHHHHHHHHH
Confidence 4556677888899999999999988876421 1 112566766664443
No 39
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.12 E-value=1.3e+02 Score=26.47 Aligned_cols=35 Identities=9% Similarity=0.216 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHH
Q 030758 117 HEIDLTVALIKVGIIAFWYFLIMPPI--IMNWLRVRW 151 (172)
Q Consensus 117 ~~~dtl~Vll~Y~~La~~YLLVvP~i--iy~wLn~RW 151 (172)
...+.++..+-|.+-++=|++.+-++ +|-|.|.|.
T Consensus 192 k~se~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~~~~~ 228 (230)
T PF03904_consen 192 KASESFWTYLWYIAYLVPYIFAIGLFIYLYEWIRAKF 228 (230)
T ss_pred hhhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888999899999977777 444555543
No 40
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=24.88 E-value=40 Score=24.24 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=12.3
Q ss_pred CCccccccch-hHHhhhhhhhhhh
Q 030758 3 PLPSICKLKD-KKKQHKKSKKYRA 25 (172)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~ 25 (172)
.-|.+||+-| .|-.+...||.+.
T Consensus 51 ~~PPVcKi~dy~k~~ye~~kk~ke 74 (76)
T PF05198_consen 51 ADPPVCKIMDYGKYKYEQKKKAKE 74 (76)
T ss_dssp SSS-EEEEE-HHHHHHHHHHHHHH
T ss_pred CCCCeEEEechHHHHHHHHHHHHh
Confidence 3488999999 4444444444443
No 41
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=24.75 E-value=1.5e+02 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHH
Q 030758 124 ALIKVGIIAFWYFLIMPPIIMN 145 (172)
Q Consensus 124 Vll~Y~~La~~YLLVvP~iiy~ 145 (172)
|.++|+++.|+.++++=..+..
T Consensus 50 iGIlYG~viGlli~~i~~~~~~ 71 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSP 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999888666544443
No 42
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=23.39 E-value=50 Score=24.36 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=7.8
Q ss_pred HhhcCCceee
Q 030758 102 ATLEQPALAV 111 (172)
Q Consensus 102 A~~e~PAlAv 111 (172)
++..+||+|+
T Consensus 4 ~a~a~PA~Al 13 (67)
T PLN00082 4 MAYAHPALAL 13 (67)
T ss_pred hhhcCcHHHH
Confidence 4667899996
No 43
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=22.95 E-value=2.1e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHh--hhhHHHH
Q 030758 124 ALIKVGIIAFWYFLIMPPIIMNWLRVRWYK--RKLFEMY 160 (172)
Q Consensus 124 Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv--~~~~ER~ 160 (172)
+..+..+-+.--++-+|..+.+...+||+. +..+|..
T Consensus 163 IseAL~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~e~~ 201 (216)
T COG0811 163 ISEALIATAIGLFVAIPAVVAYNVLRRKVEELLAKLEDF 201 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556777888877777777775 3445543
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=51 Score=29.06 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=23.1
Q ss_pred CceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHH
Q 030758 107 PALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFE 158 (172)
Q Consensus 107 PAlAvtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv~~~~E 158 (172)
|...|.++ ...++++.|+.+.+..| =.|...|||+....+
T Consensus 180 Pk~Ivd~~-----~s~~vl~~y~l~f~vil-------p~~v~~ww~rs~~yt 219 (230)
T KOG0721|consen 180 PKWIVDKE-----GSPGVLGFYGLVFGVIL-------PVFVGRWWYRSRGYT 219 (230)
T ss_pred HHHHHhcC-----CCchHHHHHHHHHHhHh-------HHHHHHHHHhhhccc
Confidence 55555554 23455555665555433 366778888876654
No 45
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=22.48 E-value=55 Score=30.76 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHhhhhHHHHHHhhheee
Q 030758 118 EIDLTVALIKVGIIAFWYFLIMP-PIIMNWLRVRWYKRKLFEMYVQFMFVFM 168 (172)
Q Consensus 118 ~~dtl~Vll~Y~~La~~YLLVvP-~iiy~wLn~RWYv~~~~ER~~mY~LVF~ 168 (172)
-......+..+-++.+..+++.| .++|.|= +||.+- ++=|.+++++.++
T Consensus 114 ~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~s-Rr~Li~-sliRv~l~~~~~v 163 (384)
T COG5409 114 ILLFVYFLPLLQVGTVFWFLLKPFQIIYYWS-RRYLIE-SLIRVFLFGYSLV 163 (384)
T ss_pred ceehhhhccHHHHHHHHHHhhcccceeeecc-hhhHHH-HHHHHHHhcccee
Confidence 34445566667777778889999 7777776 666654 4558888877543
No 46
>PRK12361 hypothetical protein; Provisional
Probab=22.22 E-value=1.4e+02 Score=27.42 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred chhhhhhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHH---------------------HhHhHHHHHHH
Q 030758 89 KSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYF---------------------LIMPPIIMNWL 147 (172)
Q Consensus 89 k~~lalq~ga~~lA~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~YL---------------------LVvP~iiy~wL 147 (172)
|.+.--=+||++++. +++.+.+. -...=++|..+..+.++..|+ +..|-.+..|+
T Consensus 6 ~~~~~y~~ga~~~~~---~~~~~~~~-~~~~~~~w~~~~~~~v~~~y~~~~~~~f~k~~~g~~~~~~~~l~~P~l~~~~~ 81 (547)
T PRK12361 6 HIKYYYLAGALLLLY---LAVTGPSI-LLTFLFAWISLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWVFIPFLLGTRL 81 (547)
T ss_pred HHHHHHHHHHHHHHH---HHHHccHH-HHHHHHHHHHHHHHHHHHHHHhcccHhhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 444455577744232 23322221 112234555666666666665 56777778888
Q ss_pred HHHHHhh
Q 030758 148 RVRWYKR 154 (172)
Q Consensus 148 n~RWYv~ 154 (172)
+.-|.++
T Consensus 82 ~~~~~r~ 88 (547)
T PRK12361 82 YNAWARK 88 (547)
T ss_pred HHHHHhc
Confidence 8855443
No 47
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=22.10 E-value=3.9e+02 Score=22.32 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHhhcCCceee-----eccc------CCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 030758 92 LGIQAGAVLLATLEQPALAV-----TGEN------NHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRW 151 (172)
Q Consensus 92 lalq~ga~~lA~~e~PAlAv-----tg~~------n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RW 151 (172)
+..-+|++| |...-|.-.| +|+. +++++-+.-...+..++..+=+|.=... |+.+||
T Consensus 5 ~G~~~G~lW-a~lAP~~~~vV~~t~~G~~v~~~l~~e~~~~F~a~a~f~~l~lv~Gvvaav~~--W~~R~~ 72 (167)
T PF10821_consen 5 LGALLGALW-AWLAPPVRGVVALTRSGERVHAYLGGESEHFFDADALFVLLGLVLGVVAAVAV--WLWRRR 72 (167)
T ss_pred HHHHHHHHH-HHhcCCCceEEEecCCCceeeccCCCcchhHhhHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 456789999 7776664332 3542 3333345455556666666666665555 555554
No 48
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=21.53 E-value=1.8e+02 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCC-ceeeecccCCchhHHHHHH--HHHHHHHHHHHhHhH-HHHHHHHHHH
Q 030758 96 AGAVLLATLEQP-ALAVTGENNHEIDLTVALI--KVGIIAFWYFLIMPP-IIMNWLRVRW 151 (172)
Q Consensus 96 ~ga~~lA~~e~P-AlAvtg~~n~~~dtl~Vll--~Y~~La~~YLLVvP~-iiy~wLn~RW 151 (172)
+|+|| ..++.= +++.+|. .+ .+.+.-.+ +...-+.--++-+|. +.|+|++.|=
T Consensus 146 lGTV~-Gmi~aF~~ia~~g~-~~-~~~va~GI~eALitTa~GL~vAIPAliayn~f~~ri 202 (244)
T PRK10414 146 FGTVW-GIMNSFIGIAQTQT-TN-LAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQI 202 (244)
T ss_pred HHHHH-HHHHHHHHHHhcCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 444433 4555664 22 23332222 222222223445564 5678888774
No 49
>PF01010 Oxidored_q1_C: NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus; InterPro: IPR002128 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain represents a C-terminal extension of NADH-Ubiquinone/plastoquinone (complex I) chains (see IPR001750 from INTERPRO). Chain 5 is a component of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process
Probab=21.24 E-value=9.3 Score=32.50 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhHh----------------------------HHHHHHHHHHHHhhhhHHHHHHhh
Q 030758 123 VALIKVGIIAFWYFLIMP----------------------------PIIMNWLRVRWYKRKLFEMYVQFM 164 (172)
Q Consensus 123 ~Vll~Y~~La~~YLLVvP----------------------------~iiy~wLn~RWYv~~~~ER~~mY~ 164 (172)
.|.++++++..+|++-.| ..+|.|..+|+|....-|++|+=+
T Consensus 161 SV~IA~~GI~iA~~lY~~~~~s~~~~~l~~~~~k~~~~~~~~d~~~~~iy~WsyNr~YID~~Y~~~fv~g 230 (242)
T PF01010_consen 161 SVSIALFGIFIAYFLYGPVYSSFQNLDLANSFVKKGPKKIFLDKIINFIYNWSYNRGYIDEFYDIVFVKG 230 (242)
T ss_pred EEEeeeeheeeeeeEECCccccchHHHHHHhhccccCccccHhhhhhhhhhhhcccchhhhhhHHHHHHH
Confidence 455678888888888777 259999999999999999887643
No 50
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=21.22 E-value=2.7e+02 Score=20.85 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 030758 116 NHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 116 n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~R 150 (172)
+.|...-.|+++.++.++.=|+..-++++-|-+.|
T Consensus 42 d~P~sieSIALl~~~~AfsgLL~lHLvv~~~r~~~ 76 (77)
T PF12292_consen 42 DTPTSIESIALLFFCFAFSGLLFLHLVVFPWRRRT 76 (77)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777888888888888999999888876543
No 51
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=21.17 E-value=1.9e+02 Score=27.77 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 030758 116 NHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 116 n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~R 150 (172)
-+..|...++.+|.++......+.|.++..|++.|
T Consensus 106 Tn~~E~~el~t~~~~~~l~~~g~l~~ll~~~~~~r 140 (555)
T COG2194 106 TNTAESSELLTLYFLLWLVLVGLLPALLIVLVIIR 140 (555)
T ss_pred CChhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777778888888888999999999998888
No 52
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.08 E-value=3.8e+02 Score=20.44 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHhhhhHHHHHHh
Q 030758 91 SLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPP-IIMNWLRVRWYKRKLFEMYVQF 163 (172)
Q Consensus 91 ~lalq~ga~~lA~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~-iiy~wLn~RWYv~~~~ER~~mY 163 (172)
.+++=||++++.-.+ .+...|..+...+--..++.-..+++.|+++.=. .++.|...||..+..-|++-.+
T Consensus 4 ~l~i~~~~llf~P~~--~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~ 75 (151)
T PF14163_consen 4 WLIIFSGLLLFLPES--LLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKK 75 (151)
T ss_pred HHHHHHHHHHHCCHH--HHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777733222 2233343222222222233344556666665432 2356777888887776666544
No 53
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=20.86 E-value=86 Score=28.07 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHhHH
Q 030758 118 EIDLTVALIKVGIIAFWYFLIMPPI 142 (172)
Q Consensus 118 ~~dtl~Vll~Y~~La~~YLLVvP~i 142 (172)
+-..+.+++.++++++.||++.|.|
T Consensus 13 dv~~l~ii~vFl~l~~sfLlIlPGI 37 (281)
T PF10204_consen 13 DVPLLIIILVFLTLAFSFLLILPGI 37 (281)
T ss_pred chhHHHHHHHHHHHHHHHHhhccCc
Confidence 3567888899999999999999987
No 54
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.58 E-value=1.5e+02 Score=22.09 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHH
Q 030758 124 ALIKVGIIAFWYFLIMPPIIM 144 (172)
Q Consensus 124 Vll~Y~~La~~YLLVvP~iiy 144 (172)
|.++|+++.|++++++=.+++
T Consensus 47 iGIlYG~viGlli~~~~~~l~ 67 (70)
T TIGR01149 47 IGILYGLVIGLILFLIYILLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667899999987766654443
No 55
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=44 Score=30.62 Aligned_cols=23 Identities=35% Similarity=0.883 Sum_probs=20.0
Q ss_pred HHHHHhhhhHHHHHHhhheeeec
Q 030758 148 RVRWYKRKLFEMYVQFMFVFMFF 170 (172)
Q Consensus 148 n~RWYv~~~~ER~~mY~LVF~FF 170 (172)
.+||.-...|==+++||+||.+|
T Consensus 287 SNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 287 SNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 47999999998888999998887
No 56
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=20.20 E-value=1.3e+02 Score=27.13 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=54.5
Q ss_pred ccchhhhhhHHHHHHHhhcCCcee-eecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH--HhhhhHHHHHHh
Q 030758 87 EKKSSLGIQAGAVLLATLEQPALA-VTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRW--YKRKLFEMYVQF 163 (172)
Q Consensus 87 ~kk~~lalq~ga~~lA~~e~PAlA-vtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RW--Yv~~~~ER~~mY 163 (172)
.+..+.++=.=+++.|.+--|-+| +=|.+-.-+-++..+..+.++|+.+++.. +.-..+++| -.++.++=..+|
T Consensus 148 ~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf~iiG~~~~~~~---i~k~~~~~~~~~~~~~~ki~~if 224 (367)
T PF09971_consen 148 IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPFFIIGGITLFKL---INKLFRRIWKPINKNSFKILSIF 224 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhcccccccchHHHHHHHH
Confidence 455666666667777888899888 66664667778888888888888876653 344556666 223333334577
Q ss_pred hheeeec
Q 030758 164 MFVFMFF 170 (172)
Q Consensus 164 ~LVF~FF 170 (172)
++|||.|
T Consensus 225 l~v~lLf 231 (367)
T PF09971_consen 225 LAVFLLF 231 (367)
T ss_pred HHHHHHH
Confidence 7777654
No 57
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=20.03 E-value=4e+02 Score=20.27 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.4
Q ss_pred hhhhHHHHHHhhheee
Q 030758 153 KRKLFEMYVQFMFVFM 168 (172)
Q Consensus 153 v~~~~ER~~mY~LVF~ 168 (172)
.+..+|||...+|++|
T Consensus 65 ~~~~i~kyg~~GL~lF 80 (121)
T PF06695_consen 65 KSKKIEKYGFWGLALF 80 (121)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 4578999988888765
Done!