Query 030758
Match_columns 172
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 06:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 42.6 40 0.0014 21.8 4.3 21 130-150 18-38 (44)
2 2l2t_A Receptor tyrosine-prote 35.8 60 0.0021 20.9 4.3 11 140-150 27-37 (44)
3 3rlf_F Maltose transport syste 25.4 31 0.0011 30.5 2.1 38 134-171 45-82 (514)
4 4hyg_A Putative uncharacterize 23.5 97 0.0033 27.0 4.7 14 91-104 16-29 (301)
5 2ks1_B Epidermal growth factor 22.8 73 0.0025 20.3 2.9 12 139-150 27-38 (44)
6 1iij_A ERBB-2 receptor protein 19.8 80 0.0027 19.6 2.5 25 126-150 10-34 (35)
7 2rdd_B UPF0092 membrane protei 19.0 80 0.0027 18.9 2.4 8 131-138 13-20 (37)
8 4b4a_A TATC, SEC-independent p 17.1 1.1E+02 0.0036 25.0 3.4 47 121-167 105-156 (249)
9 2knc_B Integrin beta-3; transm 16.3 2.8E+02 0.0095 19.1 5.8 29 131-159 18-46 (79)
10 4dkl_A MU-type opioid receptor 15.5 96 0.0033 24.0 2.6 31 134-164 65-95 (464)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=42.56 E-value=40 Score=21.78 Aligned_cols=21 Identities=5% Similarity=0.267 Sum_probs=14.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHH
Q 030758 130 IIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 130 ~La~~YLLVvP~iiy~wLn~R 150 (172)
+++.+-++++=+++.+|+++|
T Consensus 18 vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheehh
Confidence 333445667777888999887
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.76 E-value=60 Score=20.86 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=7.4
Q ss_pred hHHHHHHHHHH
Q 030758 140 PPIIMNWLRVR 150 (172)
Q Consensus 140 P~iiy~wLn~R 150 (172)
=+.+++|+++|
T Consensus 27 ~~~~~~~~RRR 37 (44)
T 2l2t_A 27 GLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 36667777765
No 3
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=25.44 E-value=31 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHhHhHHHHHHHHHHHHhhhhHHHHHHhhheeeecC
Q 030758 134 WYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFP 171 (172)
Q Consensus 134 ~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FFP 171 (172)
+-+++.=++.|.|.++|-|...-+==...++++|..||
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~ 82 (514)
T 3rlf_F 45 TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFP 82 (514)
T ss_dssp HHHHHHHHHHHHHHCGGGCTHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHeEEEECCCcccHHHHHHHHHHHHHHHHHH
Confidence 33444556777888999999988888889999998887
No 4
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=23.47 E-value=97 Score=27.01 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=10.5
Q ss_pred hhhhhHHHHHHHhh
Q 030758 91 SLGIQAGAVLLATL 104 (172)
Q Consensus 91 ~lalq~ga~~lA~~ 104 (172)
-++.|+||++|+.-
T Consensus 16 ~l~vql~AL~L~~p 29 (301)
T 4hyg_A 16 LLFVQIIAIVLVMP 29 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc
Confidence 46789999987543
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.80 E-value=73 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHH
Q 030758 139 MPPIIMNWLRVR 150 (172)
Q Consensus 139 vP~iiy~wLn~R 150 (172)
+=+++++|+++|
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 336677777765
No 6
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=19.75 E-value=80 Score=19.58 Aligned_cols=25 Identities=20% Similarity=0.382 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHH
Q 030758 126 IKVGIIAFWYFLIMPPIIMNWLRVR 150 (172)
Q Consensus 126 l~Y~~La~~YLLVvP~iiy~wLn~R 150 (172)
++-++++.+-++++=+.+.+|+++|
T Consensus 10 IaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHHHHHHHHHHHHhheEEeec
Confidence 3444444555566667777788776
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=18.97 E-value=80 Score=18.87 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 030758 131 IAFWYFLI 138 (172)
Q Consensus 131 La~~YLLV 138 (172)
++++|++.
T Consensus 13 ~~ifYFl~ 20 (37)
T 2rdd_B 13 GLIFYFMI 20 (37)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 34555544
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=17.10 E-value=1.1e+02 Score=24.97 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHH---HHhhh--hHHHHHHhhhee
Q 030758 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVR---WYKRK--LFEMYVQFMFVF 167 (172)
Q Consensus 121 tl~Vll~Y~~La~~YLLVvP~iiy~wLn~R---WYv~~--~~ER~~mY~LVF 167 (172)
...+++-++++++.|++|+|.++-+-++-- =..+- +++.|+.|.+.+
T Consensus 105 ~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l 156 (249)
T 4b4a_A 105 LGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKL 156 (249)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHH
Confidence 344566788889999999999886654321 01112 566666655443
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.32 E-value=2.8e+02 Score=19.10 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=14.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHhhhhHHH
Q 030758 131 IAFWYFLIMPPIIMNWLRVRWYKRKLFEM 159 (172)
Q Consensus 131 La~~YLLVvP~iiy~wLn~RWYv~~~~ER 159 (172)
++++-|+-+-+++.+++-..++.+.-++|
T Consensus 18 i~gilliGllllliwk~~~~i~DrrE~~k 46 (79)
T 2knc_B 18 MGAILLIGLAALLIWKLLITIHDRKEFAK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555566666655554
No 10
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=15.53 E-value=96 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHhHhHHHHHHHHHHHHhhhhHHHHHHhh
Q 030758 134 WYFLIMPPIIMNWLRVRWYKRKLFEMYVQFM 164 (172)
Q Consensus 134 ~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~ 164 (172)
++.+++|..+..++..+|.....+-++..|+
T Consensus 65 l~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 95 (464)
T 4dkl_A 65 LATSTLPFQSVNYLMGTWPFGNILCKIVISI 95 (464)
T ss_dssp HHHHHHHHHHHHHHHSSCCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccchhhhHHHH
Confidence 4556799999999998997655555544443
Done!