Query 030758
Match_columns 172
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 06:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030758.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030758hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 29.1 6.9 0.0005 30.4 0.6 36 136-171 35-70 (248)
2 d1ppjd2 f.23.11.1 (D:196-241) 15.2 93 0.0068 18.5 3.7 24 130-153 11-34 (46)
3 d3cx5h1 f.23.13.1 (H:2-94) Ubi 12.1 64 0.0047 21.9 2.5 16 136-151 56-71 (93)
4 d2ipqx1 a.4.5.74 (X:396-528) H 10.3 36 0.0026 24.3 0.7 26 135-160 39-78 (133)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 10.1 86 0.0063 20.4 2.5 19 136-154 46-64 (75)
6 d2pkgc1 g.92.1.1 (C:91-170) Sm 7.3 60 0.0044 21.8 0.7 13 13-25 28-40 (80)
7 d2oara1 f.16.1.1 (A:10-118) Ga 7.0 2.8E+02 0.02 18.4 4.3 27 121-149 63-90 (109)
8 d1duvg2 c.78.1.1 (G:151-333) O 6.7 42 0.0031 23.2 -0.3 7 1-7 121-127 (183)
9 d1tifa_ d.15.8.1 (A:) Translat 6.0 91 0.0066 20.0 1.1 10 4-13 51-60 (76)
10 g1sc3.1 c.17.1.1 (A:,B:) Inter 5.7 66 0.0048 22.9 0.2 6 167-172 255-260 (261)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=29.07 E-value=6.9 Score=30.36 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=29.7
Q ss_pred HHhHhHHHHHHHHHHHHhhhhHHHHHHhhheeeecC
Q 030758 136 FLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFP 171 (172)
Q Consensus 136 LLVvP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FFP 171 (172)
+++.=++.|.|+++|=|-++.+==.+.+|++|..||
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~P 70 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFP 70 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHheEEEEEccCccceehhhhHHHHHHHHHHHh
Confidence 344455678899999999999988999999998887
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.15 E-value=93 Score=18.46 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=17.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHh
Q 030758 130 IIAFWYFLIMPPIIMNWLRVRWYK 153 (172)
Q Consensus 130 ~La~~YLLVvP~iiy~wLn~RWYv 153 (172)
+=+.++|.++=++.|++-|..|-.
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344556667777888888999954
No 3
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.12 E-value=64 Score=21.94 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHhHhHHHHHHHHHHH
Q 030758 136 FLIMPPIIMNWLRVRW 151 (172)
Q Consensus 136 LLVvP~iiy~wLn~RW 151 (172)
|.|+|+++..|+.--|
T Consensus 56 lyv~PPfi~~Y~iy~W 71 (93)
T d3cx5h1 56 LYVLIPAGIYWYWWKN 71 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEcchHHHHHHHHHH
Confidence 3477777777777777
No 4
>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665 {Salmonella typhi [TaxId: 90370]}
Probab=10.34 E-value=36 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=20.9
Q ss_pred HHHhHhHHHHHHHH--------------HHHHhhhhHHHH
Q 030758 135 YFLIMPPIIMNWLR--------------VRWYKRKLFEMY 160 (172)
Q Consensus 135 YLLVvP~iiy~wLn--------------~RWYv~~~~ER~ 160 (172)
-+||.|.+.+-|++ .+|.+-..||++
T Consensus 39 vfLvsPgiF~~Y~~e~~~~~~~~~~e~~~~~~vQ~~FE~L 78 (133)
T d2ipqx1 39 VFISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEKM 78 (133)
T ss_dssp EEEETTHHHHHHHHHC-----------CHHHHHHHHHHTT
T ss_pred EEEEChHHHHHHHHHcCccccccccchHHHHHHHHHHHHh
Confidence 36899999999986 256788888876
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.12 E-value=86 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=13.8
Q ss_pred HHhHhHHHHHHHHHHHHhh
Q 030758 136 FLIMPPIIMNWLRVRWYKR 154 (172)
Q Consensus 136 LLVvP~iiy~wLn~RWYv~ 154 (172)
|.|+|+++..|+---|-..
T Consensus 46 l~v~PPfi~~Y~iy~W~~~ 64 (75)
T d1ppjg_ 46 LRVAPPFVAFYLVYTWGTQ 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eEEcCHHHHHHHHHHHHHH
Confidence 4568888888887777554
No 6
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=7.27 E-value=60 Score=21.76 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=9.2
Q ss_pred hHHhhhhhhhhhh
Q 030758 13 KKKQHKKSKKYRA 25 (172)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (172)
-+|||+..|++|.
T Consensus 28 L~k~H~~~k~l~k 40 (80)
T d2pkgc1 28 LRMKHENRKLYRK 40 (80)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HhHhhhhhhhhcC
Confidence 3678887777774
No 7
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.00 E-value=2.8e+02 Score=18.45 Aligned_cols=27 Identities=44% Similarity=0.518 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHH-HHHHhHhHHHHHHHHH
Q 030758 121 LTVALIKVGIIAF-WYFLIMPPIIMNWLRV 149 (172)
Q Consensus 121 tl~Vll~Y~~La~-~YLLVvP~iiy~wLn~ 149 (172)
.+..++.++++++ .||+|+= .|+-+++
T Consensus 63 fi~a~InFlIiA~vv~F~vvk--~~n~~~~ 90 (109)
T d2oara1 63 LLSAAINFFLIAFAVYFLVVL--PYNTLRK 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 5566778888887 7776642 3555443
No 8
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=6.73 E-value=42 Score=23.20 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=4.8
Q ss_pred CCCCccc
Q 030758 1 MHPLPSI 7 (172)
Q Consensus 1 ~~~~~~~ 7 (172)
|||||..
T Consensus 121 MH~LPa~ 127 (183)
T d1duvg2 121 LHCLPAF 127 (183)
T ss_dssp EECSCCC
T ss_pred EccCccc
Confidence 6777764
No 9
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.00 E-value=91 Score=19.97 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=8.0
Q ss_pred Cccccccchh
Q 030758 4 LPSICKLKDK 13 (172)
Q Consensus 4 ~~~~~~~~~~ 13 (172)
-|.+||+-|-
T Consensus 51 ~PPVcKi~dy 60 (76)
T d1tifa_ 51 KPPVCRIMDY 60 (76)
T ss_dssp SSCEEEEECH
T ss_pred CCCEEEEEcc
Confidence 4779999883
No 10
>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.68 E-value=66 Score=22.91 Aligned_cols=6 Identities=67% Similarity=1.663 Sum_probs=0.0
Q ss_pred eeecCC
Q 030758 167 FMFFPG 172 (172)
Q Consensus 167 F~FFPG 172 (172)
|+||||
T Consensus 255 ~yf~Pg 260 (261)
T g1sc3.1 255 FYLFPG 260 (261)
T ss_dssp CCCCTT
T ss_pred EEeCCC
Done!