Query 030759
Match_columns 172
No_of_seqs 117 out of 1046
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 1.2E-25 2.6E-30 168.8 18.9 133 12-154 4-143 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.9 4.9E-20 1.1E-24 139.0 17.7 139 13-163 8-151 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 4.7E-19 1E-23 128.8 15.7 133 12-157 4-140 (140)
4 PF10604 Polyketide_cyc2: Poly 99.8 2.5E-17 5.5E-22 119.6 20.1 132 9-157 2-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 2E-16 4.4E-21 116.5 16.9 131 13-157 3-143 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.7 1.1E-15 2.3E-20 110.8 15.4 131 13-158 3-140 (140)
7 cd08862 SRPBCC_Smu440-like Lig 99.7 3.3E-15 7.2E-20 108.7 16.1 129 12-157 4-137 (138)
8 cd07819 SRPBCC_2 Ligand-bindin 99.7 1.1E-14 2.5E-19 106.0 17.5 132 12-157 5-137 (140)
9 cd08861 OtcD1_ARO-CYC_like N-t 99.6 1.1E-14 2.4E-19 107.0 14.9 134 13-158 3-142 (142)
10 cd07818 SRPBCC_1 Ligand-bindin 99.6 4.8E-14 1E-18 104.6 16.0 136 9-158 2-150 (150)
11 cd07813 COQ10p_like Coenzyme Q 99.6 3.3E-14 7.2E-19 104.4 13.7 106 13-133 3-108 (138)
12 cd07822 SRPBCC_4 Ligand-bindin 99.6 2.2E-13 4.9E-18 98.8 16.8 136 12-159 3-139 (141)
13 cd07817 SRPBCC_8 Ligand-bindin 99.6 2E-13 4.4E-18 99.4 15.5 128 12-157 3-138 (139)
14 cd07825 SRPBCC_7 Ligand-bindin 99.5 6.4E-13 1.4E-17 97.7 15.2 136 12-157 3-144 (144)
15 cd07812 SRPBCC START/RHO_alpha 99.5 1.9E-12 4.1E-17 91.6 16.9 134 12-157 2-138 (141)
16 cd08860 TcmN_ARO-CYC_like N-te 99.5 1.7E-12 3.6E-17 97.3 15.9 133 12-159 4-145 (146)
17 cd07814 SRPBCC_CalC_Aha1-like 99.5 1.4E-12 3E-17 94.8 13.5 133 12-158 3-139 (139)
18 cd07824 SRPBCC_6 Ligand-bindin 99.5 7.6E-12 1.7E-16 93.0 16.1 107 13-133 5-112 (146)
19 PRK10724 hypothetical protein; 99.4 2.4E-11 5.2E-16 92.3 13.6 134 12-160 18-151 (158)
20 cd05018 CoxG Carbon monoxide d 99.3 4.2E-11 9.1E-16 87.4 13.5 109 12-133 4-113 (144)
21 PF03364 Polyketide_cyc: Polyk 99.3 4.3E-11 9.3E-16 86.6 13.1 126 18-156 1-129 (130)
22 cd07820 SRPBCC_3 Ligand-bindin 99.3 1.6E-10 3.4E-15 85.0 15.1 108 13-133 3-112 (137)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 7E-10 1.5E-14 82.3 12.7 131 14-157 4-145 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 1.4E-08 2.9E-13 74.4 13.7 101 12-129 4-111 (145)
25 cd08899 SRPBCC_CalC_Aha1-like_ 99.0 6.4E-09 1.4E-13 78.4 11.9 126 12-160 14-139 (157)
26 cd08893 SRPBCC_CalC_Aha1-like_ 99.0 2.2E-08 4.9E-13 72.4 12.6 128 12-157 3-135 (136)
27 cd08876 START_1 Uncharacterize 99.0 1.6E-07 3.5E-12 72.8 17.7 141 12-159 44-193 (195)
28 COG5637 Predicted integral mem 98.8 6.4E-08 1.4E-12 74.2 11.7 135 6-158 66-210 (217)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.8 4.7E-07 1E-11 67.0 14.5 108 12-131 3-112 (142)
30 cd08895 SRPBCC_CalC_Aha1-like_ 98.8 7.3E-07 1.6E-11 66.1 15.3 135 12-157 3-145 (146)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.8 5.1E-07 1.1E-11 66.4 13.8 105 12-132 3-110 (139)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 5.1E-07 1.1E-11 65.9 13.3 127 12-157 3-132 (133)
33 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 2.7E-06 5.9E-11 62.7 15.6 132 12-157 3-142 (143)
34 COG3427 Carbon monoxide dehydr 98.7 7.3E-07 1.6E-11 66.6 12.0 106 14-132 6-112 (146)
35 COG2867 Oligoketide cyclase/li 98.6 4.9E-07 1.1E-11 67.2 10.0 134 13-160 6-139 (146)
36 cd08901 SRPBCC_CalC_Aha1-like_ 98.6 1.8E-06 3.8E-11 63.4 12.1 126 12-158 3-132 (136)
37 PF08327 AHSA1: Activator of H 98.6 1.4E-06 3E-11 62.0 11.3 122 19-157 1-124 (124)
38 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 3.2E-06 7E-11 62.6 13.1 105 12-130 3-115 (146)
39 cd08891 SRPBCC_CalC Ligand-bin 98.5 4.9E-06 1.1E-10 61.8 13.3 102 12-131 3-116 (149)
40 PF06240 COXG: Carbon monoxide 98.5 3.6E-06 7.8E-11 62.3 12.3 107 14-133 2-109 (140)
41 cd08892 SRPBCC_Aha1 Putative h 98.5 1.3E-05 2.9E-10 58.0 13.8 121 12-157 3-125 (126)
42 cd08874 START_STARD9-like C-te 98.3 0.00011 2.5E-09 58.0 16.2 120 14-140 50-183 (205)
43 COG3832 Uncharacterized conser 98.2 6E-05 1.3E-09 56.5 12.6 95 12-116 11-107 (149)
44 PTZ00220 Activator of HSP-90 A 98.1 6E-05 1.3E-09 55.3 11.3 91 19-129 2-93 (132)
45 cd08873 START_STARD14_15-like 97.9 0.0014 3E-08 52.9 16.5 114 13-133 81-205 (235)
46 cd08905 START_STARD1-like Chol 97.9 0.001 2.3E-08 52.5 15.2 136 13-157 53-207 (209)
47 cd00177 START Lipid-binding ST 97.9 0.0034 7.4E-08 47.5 17.3 138 12-157 42-189 (193)
48 cd08871 START_STARD10-like Lip 97.9 0.0024 5.1E-08 50.7 16.6 140 14-160 52-204 (222)
49 cd08868 START_STARD1_3_like Ch 97.8 0.0033 7.1E-08 49.4 16.5 140 13-158 52-207 (208)
50 cd08869 START_RhoGAP C-termina 97.8 0.0026 5.7E-08 49.7 15.7 133 12-154 47-192 (197)
51 cd08914 START_STARD15-like Lip 97.8 0.0028 6E-08 51.2 15.6 111 12-132 81-205 (236)
52 cd08870 START_STARD2_7-like Li 97.7 0.0072 1.6E-07 47.6 17.2 117 11-133 52-179 (209)
53 cd08906 START_STARD3-like Chol 97.6 0.0077 1.7E-07 47.6 16.2 138 12-157 52-207 (209)
54 cd08911 START_STARD7-like Lipi 97.5 0.016 3.4E-07 45.7 16.7 116 17-139 53-182 (207)
55 cd08903 START_STARD5-like Lipi 97.5 0.011 2.3E-07 46.7 15.5 135 13-157 50-206 (208)
56 cd08877 START_2 Uncharacterize 97.5 0.0044 9.6E-08 48.9 13.2 132 12-156 49-212 (215)
57 cd08908 START_STARD12-like C-t 97.5 0.019 4.1E-07 45.4 16.6 133 7-151 52-192 (204)
58 cd08913 START_STARD14-like Lip 97.5 0.0061 1.3E-07 49.4 13.7 112 13-132 85-209 (240)
59 COG4276 Uncharacterized conser 97.4 0.027 5.8E-07 41.6 14.5 109 15-135 8-120 (153)
60 smart00234 START in StAR and p 97.1 0.07 1.5E-06 41.2 16.1 139 12-159 48-203 (206)
61 PF10698 DUF2505: Protein of u 97.1 0.054 1.2E-06 40.9 14.3 135 13-157 3-156 (159)
62 cd08910 START_STARD2-like Lipi 96.9 0.073 1.6E-06 42.0 13.9 138 12-158 52-202 (207)
63 cd08867 START_STARD4_5_6-like 96.8 0.18 3.9E-06 39.4 16.0 139 12-158 49-203 (206)
64 PF08982 DUF1857: Domain of un 96.6 0.15 3.2E-06 38.4 13.4 91 19-131 17-108 (149)
65 cd08902 START_STARD4-like Lipi 95.9 0.62 1.4E-05 36.8 14.8 141 13-160 51-201 (202)
66 KOG3177 Oligoketide cyclase/li 95.9 0.16 3.4E-06 40.3 10.3 102 17-132 75-180 (227)
67 cd08863 SRPBCC_DUF1857 DUF1857 95.9 0.51 1.1E-05 35.2 13.6 65 20-96 17-82 (141)
68 cd08872 START_STARD11-like Cer 95.8 0.76 1.6E-05 37.0 14.8 142 11-161 54-225 (235)
69 cd08904 START_STARD6-like Lipi 95.7 0.82 1.8E-05 36.1 16.6 142 12-160 49-203 (204)
70 PF01852 START: START domain; 94.9 1.3 2.9E-05 33.9 16.1 140 7-158 44-202 (206)
71 cd08909 START_STARD13-like C-t 94.4 2 4.4E-05 34.0 17.4 137 5-155 50-197 (205)
72 PF11687 DUF3284: Domain of un 93.0 2.4 5.1E-05 30.5 10.1 98 12-133 2-103 (120)
73 PLN00188 enhanced disease resi 87.7 21 0.00045 33.5 13.4 117 14-137 232-364 (719)
74 KOG2936 Uncharacterized conser 76.3 22 0.00048 29.8 8.3 98 13-133 177-275 (301)
75 COG4891 Uncharacterized conser 45.2 1E+02 0.0022 21.3 6.6 53 76-133 11-63 (93)
76 cd08907 START_STARD8-like C-te 42.3 1.7E+02 0.0037 23.2 13.2 137 5-155 50-197 (205)
77 PF08379 Bact_transglu_N: Bact 36.3 1.1E+02 0.0025 19.8 4.9 33 99-134 14-46 (82)
78 PF06200 tify: tify domain; I 26.9 1E+02 0.0022 17.4 2.8 21 9-30 12-32 (36)
79 KOG2761 START domain-containin 25.9 3.5E+02 0.0076 21.7 14.1 140 14-160 58-216 (219)
80 PF02087 Nitrophorin: Nitropho 24.6 2.9E+02 0.0063 21.4 5.7 27 69-98 46-72 (178)
81 cd08864 SRPBCC_DUF3074 DUF3074 23.7 3.6E+02 0.0078 21.1 10.6 121 5-133 28-179 (208)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.94 E-value=1.2e-25 Score=168.83 Aligned_cols=133 Identities=23% Similarity=0.411 Sum_probs=109.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCC-c-ccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCe
Q 030759 12 KESIESASITAEQVWACLEDFCN-A-HKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRW 89 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~-~-~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~ 89 (172)
..+++| +||+++||++++||++ + +.|.|.|.+|++++|+ |++|++|.+++ + .++..+.++|||+++|+.+|+
T Consensus 4 ~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~---~-~~~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 4 EHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITF---G-PGGKVKYVKERIDAVDEENKT 77 (148)
T ss_pred EEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEE---c-CCCcceEEEEEEEEEcccccE
Confidence 457788 9999999999999994 4 6788899999999996 89999999997 3 233344699999999999999
Q ss_pred EEEEEecCCC---cceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCC--CChhhHHHHHHHHHHHHHH
Q 030759 90 LSYEVTDNNL---GIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEG--WKFEDFASHIDYSLKFMTK 154 (172)
Q Consensus 90 ~~y~v~~~~~---p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g--~~~~~~~~~~~~~l~~L~~ 154 (172)
++|++++|++ ++++|.++++|.|.+++ +|+++|+++|++..+ ..++.+...+...++.+..
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~----~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~ 143 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDG----GCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKA 143 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCC----CEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHH
Confidence 9999999986 59999999999999776 999999999998765 3455555555544444443
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.86 E-value=4.9e-20 Score=139.02 Aligned_cols=139 Identities=22% Similarity=0.335 Sum_probs=110.7
Q ss_pred EEEEecCCCHHHHHHHHhcCCC-ccccccc-ceeeEEecCCCCCCc-eEEEEeeccCCCCCCceeeEEEEEEEEecCCCe
Q 030759 13 ESIESASITAEQVWACLEDFCN-AHKWLPN-LDTCYLVEGVPGQPG-LVRYCASSKSDGHEVTIRWVKEKLILMDPIQRW 89 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~-~~~W~P~-v~~~~~~~g~~g~~G-~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~ 89 (172)
.++++ ++||+++|+++....+ +|+.+|. |.++++++|+ |++| ++|.++|. + ++....+|||++.+|+++++
T Consensus 8 ~E~~~-~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGd-gg~gGSIk~~~f~--~--~~~~~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 8 VEVEV-KVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGD-GGPGGSIKKWTFG--P--GGPFKYVKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEE-SS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESS-SSTTT-EEEEEEE--T--TSSEEEEEEEEEEEETTTTE
T ss_pred EEEEe-cCCHHHHHHHHhcCccchhhhChhhceeEEEEccC-CCCCCeEEEEEec--C--CCCcceeEEEEEeecCCCcE
Confidence 46678 9999999999986444 7999995 6667888995 5655 99999982 2 45566899999999999999
Q ss_pred EEEEEecCCC--cceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHHHhhhhc
Q 030759 90 LSYEVTDNNL--GIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKMEHASLLM 163 (172)
Q Consensus 90 ~~y~v~~~~~--p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le~~~~a~ 163 (172)
++|++++|++ .+..|..++++.|.++| +|.++|+.+|++..+..+.. ..+...+.+|.+.+|++++|+
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g----~~v~k~t~~Ye~~~~~~~~p--~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDG----GCVVKWTIEYEKKGEDVPPP--EKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTS----CEEEEEEEEEEESSTSCHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCC----ceEEEEEEEEEecCCCCCCc--HHHHHHHHHHHHHHHHHHhcC
Confidence 9999999973 47899999999998887 89999999999986554222 223334789999999999985
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.83 E-value=4.7e-19 Score=128.78 Aligned_cols=133 Identities=33% Similarity=0.540 Sum_probs=109.1
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+++| +||+++||++++|++++++|+|.+.+++..++.+ ++|+.+.+.+ + +|. .+++++.++|+.++++.
T Consensus 4 ~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~---~--~g~--~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 4 TVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTL---K--DGG--TVRERLLALDDAERRYS 74 (140)
T ss_pred EEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEe---C--CCC--EEEEEehhcCccCCEEE
Confidence 457788 9999999999999999999999999988876644 6888888876 2 333 58999999999768999
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC----ChhhHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW----KFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~----~~~~~~~~~~~~l~~L~~~le 157 (172)
|++..+..|+..+.++++|.|.+++ +|+|+|+.++++.... ....+...+..+|++|++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~----~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 75 YRIVEGPLPVKNYVATIRVTPEGDG----GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEecCCCCCcccceEEEEEEECCCC----ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999877778888999999999887 8999999999986322 133456778888888887664
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.80 E-value=2.5e-17 Score=119.62 Aligned_cols=132 Identities=25% Similarity=0.446 Sum_probs=102.8
Q ss_pred eeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCC
Q 030759 9 WKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQR 88 (172)
Q Consensus 9 w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~ 88 (172)
++-.++++| +||+++||++++|+.++++|.|.+.+++..++ +++|..+.+.. .+.. .++++++++++.++
T Consensus 2 ~~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~-----~g~~--~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 2 FKVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG--GGPGTERTVRV-----AGRG--TVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE--CSTEEEEEEEE-----CSCS--EEEEEEEEEETTTT
T ss_pred EEEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc--cccceeEEEEe-----cccc--ceeEEEEEecCCCc
Confidence 355788999 99999999999999999999999999988762 23455566664 2312 58999999998779
Q ss_pred eEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEec-CCCCC-----hhhHHHHHHHHHHHHHHHHH
Q 030759 89 WLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADP-FEGWK-----FEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 89 ~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p-~~g~~-----~~~~~~~~~~~l~~L~~~le 157 (172)
.+.|++. ..|+..+.+++++.|.++ +|+|+|+.++++ ..+.. ...+...++..|+.|++.+|
T Consensus 72 ~~~~~~~--~~~~~~~~~~~~~~~~~~-----gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 72 RITWRFV--PSGFTNGTGRWRFEPVGD-----GTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEEEE--SSSSCEEEEEEEEEEETT-----TEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE--ecceeEEEEEEEEEEcCC-----CEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999996 567778899999999985 699999999995 33433 22345667777888887775
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.75 E-value=2e-16 Score=116.50 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=93.0
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCC-----ceEEEEeeccCCCCCCceeeEEEEEEEEecCC
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQP-----GLVRYCASSKSDGHEVTIRWVKEKLILMDPIQ 87 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~-----G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~ 87 (172)
.++.| +||+++||+++.|++++|+|+|.+.+|+++++.+++. +..+.+.. + -.+ .+..++.+.++.+
T Consensus 3 ~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~---~-~~~---~v~~~~~~~~~~~ 74 (144)
T cd08866 3 ARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFF---K-FEA---RVVLELREREEFP 74 (144)
T ss_pred EEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEee---e-eeE---EEEEEEEEecCCC
Confidence 57788 9999999999999999999999999999886532211 11111110 0 011 2455667777656
Q ss_pred CeEEEEEecCCCcceeEEEEEEEEeecC-CCCCCccEEEEEEEEecCCCCChhh----HHHHHHHHHHHHHHHHH
Q 030759 88 RWLSYEVTDNNLGIKSYVATIKVFPINF-DNGMKGCRIEWSYVADPFEGWKFED----FASHIDYSLKFMTKKME 157 (172)
Q Consensus 88 ~~~~y~v~~~~~p~~~~~~t~~v~p~~~-~~~~~~t~v~W~~~~~p~~g~~~~~----~~~~~~~~l~~L~~~le 157 (172)
+.+.|++++|+ +..+.+++++.|.++ + +|+|+|+.+++|..+..... +...+...|++|++++|
T Consensus 75 ~~i~~~~~~g~--~~~~~g~w~~~~~~~~~----~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 75 RELDFEMVEGD--FKRFEGSWRLEPLADGG----GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred ceEEEEEcCCc--hhceEEEEEEEECCCCC----eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999775 578899999999988 6 89999999999864433222 34555555666666554
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.70 E-value=1.1e-15 Score=110.79 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=96.4
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSY 92 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y 92 (172)
.+++| +||+++||++++|+.++++|+|.+..++.+.+.+.++|+...+... . .+.. -.++++++++++ ++.+.|
T Consensus 3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~-~--~g~~-~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRK-F--LGRR-IELTYEITEYEP-GRRVVF 76 (140)
T ss_pred eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEE-e--cCce-EEEEEEEEEecC-CcEEEE
Confidence 57788 9999999999999999999999998888776555667876666531 1 1222 146899999997 488999
Q ss_pred EEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC-------ChhhHHHHHHHHHHHHHHHHHH
Q 030759 93 EVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW-------KFEDFASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 93 ~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~-------~~~~~~~~~~~~l~~L~~~le~ 158 (172)
....+++ .+.+++++.+.++ +|+++|+.++++. +. ....+...++..|++|++.+|+
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~-----~t~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 77 RGSSGPF---PYEDTYTFEPVGG-----GTRVRYTAELEPG-GFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EecCCCc---ceEEEEEEEEcCC-----ceEEEEEEEEccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 9876543 3688999999764 7999999999863 11 1123356677777777777653
No 7
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.69 E-value=3.3e-15 Score=108.72 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=95.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+++| +||+++||++++|++++++|+|.+.+++...+.+ ++|+...+.. + ++. .+..++.++++. ++++
T Consensus 4 ~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~---~--~~~--~~~~~i~~~~p~-~~~~ 73 (138)
T cd08862 4 EATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKP---P--GLV--RSTFTVTELRPG-HSFT 73 (138)
T ss_pred EEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEec---C--CCC--ceEEEEEEecCC-CEEE
Confidence 467888 9999999999999999999999999998865532 6676555554 2 232 478899999985 6799
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC-----ChhhHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW-----KFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~-----~~~~~~~~~~~~l~~L~~~le 157 (172)
|+.... ...+..+++|.+.+++ +|+++|++++.+..+. ....++..++..|+.|++.+|
T Consensus 74 ~~~~~~---~~~~~~~~~~~~~~~~----~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 74 WTGPAP---GISAVHRHEFEAKPDG----GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred EEecCC---CEEEEEEEEEEEcCCC----cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 986542 2345689999998766 8999999999854221 122345667777777777665
No 8
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=1.1e-14 Score=105.99 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=87.0
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecC-CCeE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPI-QRWL 90 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~-~~~~ 90 (172)
+.+++| +||+++||++|.|++++++|+|.+.+++.+++++++.+....+.. . ..+ ...+.+.+++.. .+++
T Consensus 5 ~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~~~~i 76 (140)
T cd07819 5 SREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGV---G-AYG---IKDTYALEYTWDGAGSV 76 (140)
T ss_pred EEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEE---e-eee---EEEEEEEEEEEcCCCcE
Confidence 457788 999999999999999999999999999886654333322222332 1 112 122334455432 4789
Q ss_pred EEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHH
Q 030759 91 SYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 91 ~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le 157 (172)
+|+..++. +...+.++++|.|.++ +|+|+|+.++++...........+.+..+..+.+.|+
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~-----~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (140)
T cd07819 77 SWTLVEGE-GNRSQEGSYTLTPKGD-----GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLK 137 (140)
T ss_pred EEEEeccc-ceeEEEEEEEEEECCC-----CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHh
Confidence 99998764 5677889999999865 6999999999975322222223334434444444443
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.64 E-value=1.1e-14 Score=106.99 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSY 92 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y 92 (172)
.+++| +||+++||++++||+++|+|+|. ..+..++.+ ++...++.... .+ .++. .-.+....+|+..+++.|
T Consensus 3 ~s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~-~~~~~~~~~~~--~~-~g~~--~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 3 HSVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELD-GGVERLRMWAT--AF-DGSV--HTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred EEEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc-CCEEEEEEEEE--cC-CCcE--EEEEEEEEEcCCCCEEEE
Confidence 57888 99999999999999999999998 555554432 11123443332 11 2332 222455577886789999
Q ss_pred EEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC------hhhHHHHHHHHHHHHHHHHHH
Q 030759 93 EVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK------FEDFASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 93 ~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~------~~~~~~~~~~~l~~L~~~le~ 158 (172)
....++.++..+.++++|.|.+++ +|+|+|+.++++..... ...+...+...|++|++++|.
T Consensus 75 ~~~~~~~~~~~~~g~w~~~~~~~~----~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 75 RQEEPPPPVASMSGEWRFEPLGGG----GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEeeCCCChhhheeEEEEEECCCC----cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 988765567889999999999876 89999999998652211 223346677788888888763
No 10
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=4.8e-14 Score=104.57 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=95.3
Q ss_pred eeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEE----ecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEe
Q 030759 9 WKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYL----VEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMD 84 (172)
Q Consensus 9 w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~----~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D 84 (172)
|+-+.++.| +||+++||++++|+.++++|+|.+..+.. ..+.+.++|+...+.. +...+ ....++++++
T Consensus 2 ~~~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~---~~~~~v~~~~ 74 (150)
T cd07818 2 YRVERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEG---NDKVG---EGEMEITESV 74 (150)
T ss_pred eEEEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEec---CCccc---ceEEEEEecC
Confidence 556789999 99999999999999999999997654321 1233456777655553 20013 2456788898
Q ss_pred cCCCeEEEEEec-CCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC--------hhhHHHHHHHHHHHHHHH
Q 030759 85 PIQRWLSYEVTD-NNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK--------FEDFASHIDYSLKFMTKK 155 (172)
Q Consensus 85 ~~~~~~~y~v~~-~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~--------~~~~~~~~~~~l~~L~~~ 155 (172)
+ ++++.|++.. ++++ ....+++++.|.+ + +|+|+|+.+++...+.. ...+++.++.+|++|++.
T Consensus 75 p-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~-~----gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 147 (150)
T cd07818 75 P-NERIEYELRFIKPFE-ATNDVEFTLEPVG-G----GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAV 147 (150)
T ss_pred C-CcEEEEEEEecCCcc-ccceEEEEEEEcC-C----ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8 5789999885 3332 3678999999994 4 79999999998542211 223456677777777777
Q ss_pred HHH
Q 030759 156 MEH 158 (172)
Q Consensus 156 le~ 158 (172)
+|+
T Consensus 148 ~E~ 150 (150)
T cd07818 148 LEK 150 (150)
T ss_pred hhC
Confidence 763
No 11
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.60 E-value=3.3e-14 Score=104.38 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=79.7
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSY 92 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y 92 (172)
.+++| +||++.||++++|++++++|+|++.+++++++.+.. -.++ ... ..+ +....+..++ .+++ ++++++
T Consensus 3 ~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~-~~~~-~~~-~~~---~~~~~~~~~~-~~~~-~~~i~~ 73 (138)
T cd07813 3 KSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE-LEAE-LTV-GFG---GIRESFTSRV-TLVP-PESIEA 73 (138)
T ss_pred EEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE-EEEE-EEE-eec---cccEEEEEEE-EecC-CCEEEE
Confidence 46788 999999999999999999999999999998764322 1223 222 012 2111233443 4677 578999
Q ss_pred EEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 93 EVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 93 ~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+..++ +++.+.+++++.|.+++ +|+|+|..+++|.
T Consensus 74 ~~~~g--~~~~~~g~w~~~p~~~~----~T~v~~~~~~~~~ 108 (138)
T cd07813 74 ELVDG--PFKHLEGEWRFKPLGEN----ACKVEFDLEFEFK 108 (138)
T ss_pred EecCC--ChhhceeEEEEEECCCC----CEEEEEEEEEEEC
Confidence 98877 46778999999999987 9999999999986
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=2.2e-13 Score=98.80 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=91.3
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.+++| +||+++||++++|++++++|+|.+..+.... .++|....+.+. .+ ++......++++++|+. +++.
T Consensus 3 ~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~-~~--~~~~~~~~~~v~~~~p~-~~~~ 74 (141)
T cd07822 3 STEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVK-LP--GGPPRSFKPRVTEVEPP-RRLA 74 (141)
T ss_pred EEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEe-CC--CCCcEEEEEEEEEEcCC-CEeE
Confidence 457888 9999999999999999999999887664421 345654444431 11 11112578899999994 7999
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC-hhhHHHHHHHHHHHHHHHHHHh
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK-FEDFASHIDYSLKFMTKKMEHA 159 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~-~~~~~~~~~~~l~~L~~~le~~ 159 (172)
|+...+..+......+++|.|.+++ +|+++|+..+....... ...+...+..+++.+.+.|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~----~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 139 (141)
T cd07822 75 WRGGLPFPGLLDGEHSFELEPLGDG----GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKAR 139 (141)
T ss_pred EEecCCCCcEeeEEEEEEEEEcCCC----cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHh
Confidence 9987765444456789999998666 89999998887432211 1123444555555555554443
No 13
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=2e-13 Score=99.37 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=92.0
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.+++| +||+++||+++.|++++++|+|.+.+++...+. +....+.. | . |....+..+++++++. +.+.
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~---~-~-g~~~~~~~~v~~~~~~-~~i~ 71 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKG---P-A-GLSVEWDAEITEQVPN-ERIA 71 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEec---C-C-CCcEEEEEEEeccCCC-CEEE
Confidence 357788 999999999999999999999999998876541 12222222 3 1 2222466777788784 5799
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC--------hhhHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK--------FEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~--------~~~~~~~~~~~l~~L~~~le 157 (172)
|....+.+ ...+++++.+.+++ +|+|+++..++|..+.. ...++..++..|+.|++.+|
T Consensus 72 ~~~~~~~~---~~~~~~~f~~~~~~----~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 72 WRSVEGAD---PNAGSVRFRPAPGR----GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EEECCCCC---CcceEEEEEECCCC----CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99876643 46789999998876 89999999999763221 12345667777777777665
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=6.4e-13 Score=97.75 Aligned_cols=136 Identities=15% Similarity=0.019 Sum_probs=90.9
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecC-CCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEG-VPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWL 90 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g-~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~ 90 (172)
..+++| +||+++||++++|+.++++|+|.........+ .+-++|....+.+. .+ ++. ..+..+++++++. +++
T Consensus 3 ~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--g~~-~~~~~~v~~~~p~-~~l 76 (144)
T cd07825 3 SVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMR-LD--GGP-YRITNHVVAFEEN-RLI 76 (144)
T ss_pred EEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEE-cC--CCc-eEEEEEEEEECCC-CEE
Confidence 568889 99999999999999999999985332222222 23456765555541 12 222 2466789999995 789
Q ss_pred EEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC---C--hhhHHHHHHHHHHHHHHHHH
Q 030759 91 SYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW---K--FEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 91 ~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~---~--~~~~~~~~~~~l~~L~~~le 157 (172)
+|+......+......++++.+.+++ +|+|+++..|...... . ...+..-++..|+.|++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~g----~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 77 AWRPGPAGQEPGGHRWRWELEPIGPG----RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEEccCCCCCCCceeEEEEEEECCCC----cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 99865222233445678999998877 8999999998854221 1 12234556677777776654
No 15
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=1.9e-12 Score=91.57 Aligned_cols=134 Identities=20% Similarity=0.231 Sum_probs=96.8
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.++.| +||+++||++++|++++++|+|.+..++...+.....|....+.+. + .... ....++..+++ +..++
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~v~~~~~-~~~~~ 74 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRK--G-GRRL--TLTSEVTEVDP-PRPGR 74 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEec--C-Cccc--cceEEEEEecC-CCceE
Confidence 357788 9999999999999999999999999998876655556665555431 1 1111 46788999988 56899
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC---ChhhHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW---KFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~---~~~~~~~~~~~~l~~L~~~le 157 (172)
|....++.+ ..+.+++++.+.+++ +|+++|+.++++.... ....+...++..+..+.+.++
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~----~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T cd07812 75 FRVTGGGGG-VDGTGEWRLEPEGDG----GTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALK 138 (141)
T ss_pred EEEecCCCC-cceeEEEEEEECCCC----cEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHH
Confidence 998877654 567899999999875 7999999999976332 223344445544444444443
No 16
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.51 E-value=1.7e-12 Score=97.34 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=93.5
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEE---EEecCCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLI---LMDPIQR 88 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~---~~D~~~~ 88 (172)
.-+++| +|||++||++++|+++||.|+|.++++++++.++.+.| .|..-. . + .+|. ..... ..|+..+
T Consensus 4 ~~si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~-~r~~i~-~-~-~~g~----~~~w~s~~~~~~~~~ 74 (146)
T cd08860 4 DNSIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR-FRLTMH-P-D-ANGT----VWSWVSERTLDPVNR 74 (146)
T ss_pred eeEEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE-EEEEEE-e-c-cCCE----EEEEEEEEEecCCCc
Confidence 457888 99999999999999999999999999999876444555 333211 0 1 1232 22332 2577777
Q ss_pred eEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC------hhhHHHHHHHHHHHHHHHHHHh
Q 030759 89 WLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK------FEDFASHIDYSLKFMTKKMEHA 159 (172)
Q Consensus 89 ~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~------~~~~~~~~~~~l~~L~~~le~~ 159 (172)
++.++ .....|+....+.+++.|.++ +|+|+++.+|+...+.. ...+...+...|++|++.+|+.
T Consensus 75 ~i~~~-~~~~~p~~~m~~~W~f~~~~~-----gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 75 TVRAR-RVETGPFAYMNIRWEYTEVPE-----GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred EEEEE-EecCCCcceeeeeEEEEECCC-----CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 78875 222346889999999999954 69999999998542221 2344566778888888888863
No 17
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.48 E-value=1.4e-12 Score=94.83 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=92.4
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+++| +||+++||+++.|+.++++|+|.+..+..... .| |+.+.... ...++. ..+..+++++|+. +.+.
T Consensus 3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~-~G--g~~~~~~~---~~~g~~-~~~~~~i~~~~~~-~~i~ 73 (139)
T cd07814 3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAEMDLR-VG--GRWFFFMT---GPDGEE-GWVSGEVLEVEPP-RRLV 73 (139)
T ss_pred EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceEEccc-CC--ceEEEEEE---CCCCCE-EeccEEEEEEcCC-CeEE
Confidence 357888 99999999999999999999997333322111 22 56665543 101111 1478899999985 7899
Q ss_pred EEEecCCC-cceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCC---CChhhHHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNL-GIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEG---WKFEDFASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 92 y~v~~~~~-p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g---~~~~~~~~~~~~~l~~L~~~le~ 158 (172)
|+...++. +.......++|.|.+ + +|+|+|+.++.+... ......+.-+...|..|++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 74 FTWAFSDETPGPETTVTVTLEETG-G----GTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred EEecccCCCCCCceEEEEEEEECC-C----CEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 99887653 345678899999998 5 799999999886521 11233456677777777777763
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.46 E-value=7.6e-12 Score=92.97 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=76.7
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEec-CCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVE-GVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~-g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
.+.+| +||+++||++++|++++++|+|.+.+++.++ +++.++|+.-..... . ..+..-.+.-++.++++ .+.+.
T Consensus 5 ~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~v~~~~p-~~~~~ 79 (146)
T cd07824 5 TVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWR--G-LLPYRLRFELRVTRIEP-LSLLE 79 (146)
T ss_pred EEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEE--e-cCCcEEEEEEEEEeecC-CcEEE
Confidence 46778 9999999999999999999999999998876 344556654333221 0 11211135566778877 57899
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
|+. .+++ . ..++++|.+.++ +|+|+++.++++.
T Consensus 80 ~~~-~g~~--~-~~~~~~~~~~~~-----gt~vt~~~~~~~~ 112 (146)
T cd07824 80 VRA-SGDL--E-GVGRWTLAPDGS-----GTVVRYDWEVRTT 112 (146)
T ss_pred EEE-EEee--e-EEEEEEEEEcCC-----CEEEEEEEEEEcC
Confidence 985 4543 3 368999999654 7999999999853
No 19
>PRK10724 hypothetical protein; Provisional
Probab=99.37 E-value=2.4e-11 Score=92.30 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=92.8
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.++.| ++|++++|+++.|.++||+|+|.+.++++++..+++. +..+.. .. +|....+..+. .++++ +++.
T Consensus 18 ~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~--~a~l~v-~~---~g~~~~f~srv-~~~~~-~~I~ 88 (158)
T PRK10724 18 SRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQM--TAAVDV-SK---AGISKTFTTRN-QLTSN-QSIL 88 (158)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEE--EEEEEE-ee---CCccEEEEEEE-EecCC-CEEE
Confidence 456788 9999999999999999999999999999876533221 222221 01 22211333443 34554 5899
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKMEHAS 160 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le~~~ 160 (172)
+.+++| |++...+.+++.|.+++ +|+|++..+|+.........+..+++...+.|.+.+++.+
T Consensus 89 ~~~~~G--pF~~l~g~W~f~p~~~~----~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra 151 (158)
T PRK10724 89 MQLVDG--PFKKLIGGWKFTPLSQE----ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRA 151 (158)
T ss_pred EEecCC--ChhhccceEEEEECCCC----CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 47889999999999876 8999999999864322233345666666666666666543
No 20
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.35 E-value=4.2e-11 Score=87.42 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=74.9
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.+++| ++|+++||++++|++++++|+|++.+++.++++ .......+.+ .| .++.. ..+-++.++++. +++.
T Consensus 4 ~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~--~~~~~~~~~~--~~-~~~~~-~~~~~~~~~~~~-~~~~ 75 (144)
T cd05018 4 SGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIGPN--EYEATVKLKV--GP-VKGTF-KGKVELSDLDPP-ESYT 75 (144)
T ss_pred eeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccCCC--eEEEEEEEEE--cc-EEEEE-EEEEEEEecCCC-cEEE
Confidence 457788 999999999999999999999999888765532 1111111111 11 11111 234566777764 6788
Q ss_pred EEEecCC-CcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 92 YEVTDNN-LGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 92 y~v~~~~-~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+...... .....+.+++++.|. ++ +|+|+|+.++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~-~~----gT~v~~~~~~~~~ 113 (144)
T cd05018 76 ITGEGKGGAGFVKGTARVTLEPD-GG----GTRLTYTADAQVG 113 (144)
T ss_pred EEEEEcCCCceEEEEEEEEEEec-CC----cEEEEEEEEEEEc
Confidence 8866432 234678899999998 55 8999999999964
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.34 E-value=4.3e-11 Score=86.61 Aligned_cols=126 Identities=15% Similarity=0.200 Sum_probs=81.0
Q ss_pred cCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEecC
Q 030759 18 ASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVTDN 97 (172)
Q Consensus 18 ~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~~~ 97 (172)
|+||+++||++++|++++++|+|.+.++++++.++++......+.. .+... .+..++....+. . +.+..+.|
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~-~-~~~~~~~g 72 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKF-----GGIKR-SWTSRVTEDPPE-R-IRFEQISG 72 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECT-----TTTCE-EEEEEEEEECTT-T-EEEESSET
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEec-----CCEEE-EEEEEEEEEEee-e-eeeeecCC
Confidence 3999999999999999999999999999998764331111111221 22222 355665555443 3 88887776
Q ss_pred CCcceeEEEEEEEEeecC---CCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHH
Q 030759 98 NLGIKSYVATIKVFPINF---DNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKM 156 (172)
Q Consensus 98 ~~p~~~~~~t~~v~p~~~---~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~l 156 (172)
+ ++.+.+++++.+.++ + .+|+++..++++|........+..+++..+..+.+.+
T Consensus 73 ~--~~~~~g~W~~~~~~~~~~g---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 73 P--FKSFEGSWRFEPLGGNEGG---TRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp T--EEEEEEEEEEEEETTECCE---EEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred C--chhcEEEEEEEECCCCcCC---CEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 4 689999999999996 3 2566666666766532222233455555555555544
No 22
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=1.6e-10 Score=84.98 Aligned_cols=108 Identities=12% Similarity=-0.006 Sum_probs=80.7
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCC--CCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGV--PGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWL 90 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~--~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~ 90 (172)
.+++| +||+++||+.++|++++++|+|.+.++++++.. ...+|+.-...+. + .+... ..+-+++++++ ++.+
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~--~-~~~~~-~w~~~it~~~p-~~~f 76 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLR--H-FGIPQ-RWTTEITEVEP-PRRF 76 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEE--e-cCCce-EEEEEEEEEcC-CCeE
Confidence 47788 999999999999999999999999888886432 2234554444432 1 12222 35677889988 4789
Q ss_pred EEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 91 SYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 91 ~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+++...|+ +....+++++.|.++ +|+|+++.+|++.
T Consensus 77 ~~~~~~G~--~~~w~h~~~f~~~~~-----gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGP--FRSWRHTHRFEAIGG-----GTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCC--chhCEEEEEEEECCC-----ceEEEEEEEEeCC
Confidence 99987764 566788999998764 6999999999975
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.18 E-value=7e-10 Score=82.35 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCC-ceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEE
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQP-GLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSY 92 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~-G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y 92 (172)
+++| +||+++||++++|+++++.|.|++...+...+ +.. ..++. .+ .+ -.... ..+=++.++++..+++.+
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~--~~~~~~~~~-~~--g~-~~~~~-~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVEGD--DEYKGTVKV-KL--GP-ISASF-KGTARLLEDDEAARRAVL 75 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceeccccCC--CeEEEEEEE-EE--cc-EEEEE-EEEEEEEeccCCCcEEEE
Confidence 6778 99999999999999999999999877665332 111 11111 11 11 01110 012256667645688888
Q ss_pred EEecCCC---cceeEEEEEEEEeecCCCCCCccEEEEEEEEecC---CCCC----hhhHHHHHHHHHHHHHHHHH
Q 030759 93 EVTDNNL---GIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF---EGWK----FEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 93 ~v~~~~~---p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~---~g~~----~~~~~~~~~~~l~~L~~~le 157 (172)
.....+. +--....++++.| .++ +|+|+|..+++.. .... ....+.++...+++|++++|
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~----gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSP-AGG----GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEe-cCC----cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7654211 1113566888888 445 8999999988743 1111 22345566666666666655
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.03 E-value=1.4e-08 Score=74.44 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=66.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+++| +||+++||++++|.+.+++|++... +....+ .+..|. +.. ++..+. ...-+++++++ .+++.
T Consensus 4 ~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~-~~~~g~---~~~---~~~~~~--~~~~~i~~~~p-~~~l~ 71 (145)
T cd08898 4 ERTILI-DAPRERVWRALTDPEHFGQWFGVKL-GPFVVG-EGATGE---ITY---PGYEHG--VFPVTVVEVDP-PRRFS 71 (145)
T ss_pred EEEEEe-cCCHHHHHHHhcChhhhhhcccccC-CCcccC-CcceeE---Eec---CCCCcc--ceEEEEEEeCC-CcEEE
Confidence 357888 9999999999999999999998542 211111 111222 222 211111 35678999999 47899
Q ss_pred EEEecCC----C---cceeEEEEEEEEeecCCCCCCccEEEEEEE
Q 030759 92 YEVTDNN----L---GIKSYVATIKVFPINFDNGMKGCRIEWSYV 129 (172)
Q Consensus 92 y~v~~~~----~---p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~ 129 (172)
|+..... . +......+++|.+.++ +|+|+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gT~vt~~~~ 111 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG-----GTLLTVTES 111 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEecCC-----cEEEEEEEc
Confidence 9875432 1 1224568899999764 799999865
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.02 E-value=6.4e-09 Score=78.40 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=84.9
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
.++++| +||+++||++++|+.++++|+|.. .. +-.+|......+. +.... ....+++++|+. +++.
T Consensus 14 ~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~------~~-~~~~G~~~~~~~~--~~~~~---~~~~~v~e~~p~-~~l~ 79 (157)
T cd08899 14 RFERLL-PAPIEDVWAALTDPERLARWFAPG------TG-DLRVGGRVEFVMD--DEEGP---NATGTILACEPP-RLLA 79 (157)
T ss_pred EEEEec-CCCHHHHHHHHcCHHHHHhhcCCC------CC-CcccCceEEEEec--CCCCC---ccceEEEEEcCC-cEEE
Confidence 457788 999999999999999999999932 11 1223433333331 10012 367789999995 7899
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKMEHAS 160 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le~~~ 160 (172)
|+...+. .....+++|.+.+ + +|+|+.+.++.+.. ........-....|+.|++.+|+..
T Consensus 80 ~~~~~~~---~~~~~~~~l~~~~-~----gT~v~~~~~~~~~~-~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 80 FTWGEGG---GESEVRFELAPEG-D----GTRLTLTHRLLDER-FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEecCCC---CCceEEEEEEEcC-C----CEEEEEEEeccCch-hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 9877544 2346788898865 5 79999998887653 1233344556677788888887654
No 26
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.97 E-value=2.2e-08 Score=72.39 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=79.1
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCc-eEEEEeeccCCCCCCceeeEEEEEEEEecCCCeE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPG-LVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWL 90 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G-~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~ 90 (172)
..++.| +||+++||++++|...+++|++... + .. +-.+| ..+.... . .... .+.=+++++++. +++
T Consensus 3 ~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~-~~~~G~~~~~~~~---~-~~~~--~~~~~v~~~~~~-~~l 69 (136)
T cd08893 3 VYVTYI-RATPEKVWQALTDPEFTRQYWGGTT-V---ES-DWKVGSAFEYRRG---D-DGTV--DVEGEVLESDPP-RRL 69 (136)
T ss_pred EEEEEe-cCCHHHHHHHHcCchhhhheecccc-c---cc-CCcCCCeEEEEeC---C-Cccc--ccceEEEEecCC-CeE
Confidence 357888 9999999999999999999997632 1 22 12233 3443321 1 1111 245678888874 678
Q ss_pred EEEEecCCC----cceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHH
Q 030759 91 SYEVTDNNL----GIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 91 ~y~v~~~~~----p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le 157 (172)
.|+...+.. +......++++.+.++ +|+++.+....+......+....-+...|+.|++.+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-----~t~l~~~~~~~~~~~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 70 VHTWRAVWDPEMAAEPPSRVTFEIEPVGD-----VVKLTVTHDGFPPGSPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEEEecCCCcccCCCCCEEEEEEEEecCC-----cEEEEEEecCCCCchhHHHhhhcCHHHHHHHHHHHhc
Confidence 887654322 2235677899998654 6888888766443111233344445556667776665
No 27
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.95 E-value=1.6e-07 Score=72.78 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=84.0
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+++.+| ++|+++||+++.|.+.+++|.|.+..|++++..+...-..+...-.++|-.+.. ++..+-...+..+..+.
T Consensus 44 k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rd--fv~~~~~~~~~~~~~~~ 120 (195)
T cd08876 44 KAVAEV-DASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRD--MVLRSTTEQDADDGSVT 120 (195)
T ss_pred EEEEEE-eCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCce--EEEEEEEEEcCCCCEEE
Confidence 456678 999999999999999999999999999988753221111222211111101121 22222222332123444
Q ss_pred EEEecCC--Cc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 030759 92 YEVTDNN--LG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKMEHA 159 (172)
Q Consensus 92 y~v~~~~--~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le~~ 159 (172)
..+.+.+ .| ...+.+.+.++|.+++ +|+|++...++|....+.-.+..+....+..+-+.+++.
T Consensus 121 i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~----~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 121 ITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNG----KTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEeecCCccCCCCCCeEEceeceeeEEEEECCCC----eEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443322 23 4567788999999877 899999999999733333334445555555555555544
No 28
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.85 E-value=6.4e-08 Score=74.17 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=95.3
Q ss_pred cCceee-EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEe
Q 030759 6 LSKWKG-KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMD 84 (172)
Q Consensus 6 ~~~w~g-~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D 84 (172)
..+|-. +++++| ++|+++||.+.+|++++|.|+..+.+.++.+... +.-.+.- | .+..+. .+-+|++..
T Consensus 66 ~~~~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----SrW~~~a---p-~g~~v~-Wea~it~d~ 135 (217)
T COG5637 66 MAKPIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----SRWKANA---P-LGLEVE-WEAEITKDI 135 (217)
T ss_pred ccCceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----cceeEcC---C-CCceEE-EeehhhccC
Confidence 344543 457888 9999999999999999999999999988876532 2222222 4 344443 455666655
Q ss_pred cCCCeEEEEEecC-CCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhH--------HHHHHHHHHHHHHH
Q 030759 85 PIQRWLSYEVTDN-NLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDF--------ASHIDYSLKFMTKK 155 (172)
Q Consensus 85 ~~~~~~~y~v~~~-~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~--------~~~~~~~l~~L~~~ 155 (172)
+ +.+|.|+-++| .++ ..+.+++.+..++ .|+|+-+..|.|+.+...... ..-++.-|+.++..
T Consensus 136 ~-~e~I~W~Sl~Ga~v~---NsG~VrF~~~pg~----~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~ 207 (217)
T COG5637 136 P-GERIQWESLPGARVE---NSGAVRFYDAPGD----STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEY 207 (217)
T ss_pred C-CcEEeeecCCCCcCC---CCccEEeeeCCCC----ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 5 67999998877 344 4678999999876 899999999998744322211 35566677777776
Q ss_pred HHH
Q 030759 156 MEH 158 (172)
Q Consensus 156 le~ 158 (172)
.|.
T Consensus 208 ~e~ 210 (217)
T COG5637 208 QEN 210 (217)
T ss_pred HHc
Confidence 665
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.79 E-value=4.7e-07 Score=67.01 Aligned_cols=108 Identities=13% Similarity=0.000 Sum_probs=68.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccc-eeeEEecCCCCCC-ceEEEEeeccCCCCCCceeeEEEEEEEEecCCCe
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNL-DTCYLVEGVPGQP-GLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRW 89 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v-~~~~~~~g~~g~~-G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~ 89 (172)
.++.+| +||+++||+++.|-+.+.+|+..- ..+...+.+ -.+ |..+.... .+ +|....+.=++++++|. ++
T Consensus 3 ~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~--~~--~g~~~~~~g~~~ei~p~-~~ 75 (142)
T cd07826 3 VITREF-DAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHR--AP--DGEEMGFHGVYHEVTPP-ER 75 (142)
T ss_pred EEEEEE-CCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEEE--CC--CCCEecceEEEEEEcCC-CE
Confidence 467888 999999999999999999999522 122222221 122 34554432 12 22211356678999994 77
Q ss_pred EEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEe
Q 030759 90 LSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVAD 131 (172)
Q Consensus 90 ~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~ 131 (172)
|.|+-.-.+.+......+++|.+.+ + +|+++.+..+.
T Consensus 76 l~~t~~~~~~~~~~s~v~~~l~~~~-~----gT~l~l~~~~~ 112 (142)
T cd07826 76 IVQTEEFEGLPDGVALETVTFTELG-G----RTRLTATSRYP 112 (142)
T ss_pred EEEEeEecCCCCCceEEEEEEEECC-C----CEEEEEEEEeC
Confidence 8886543323223456789999876 4 79999886664
No 30
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=7.3e-07 Score=66.10 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccc-cceeeEEe--cCCCCCCceEEEEeeccCCCC---CCceeeEEEEEEEEec
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLP-NLDTCYLV--EGVPGQPGLVRYCASSKSDGH---EVTIRWVKEKLILMDP 85 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P-~v~~~~~~--~g~~g~~G~vR~~~~~~~~~~---~g~~~~~~E~l~~~D~ 85 (172)
.+++.| +||+++||+++.|...+.+|++ .--.+... +...|+. .+.......+.. .|....+.=+++++++
T Consensus 3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~--~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p 79 (146)
T cd08895 3 RLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGG--FRMSLTYFDPSVGKTTGNTDVFGGRFLELVP 79 (146)
T ss_pred EEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCe--EEEEEEcCCccccccCCcEeeeEEEEEEEcC
Confidence 467889 9999999999999999999995 21222222 2223332 333221000000 1111124557999999
Q ss_pred CCCeEEEEEec--CCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHH
Q 030759 86 IQRWLSYEVTD--NNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 86 ~~~~~~y~v~~--~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le 157 (172)
. ++|.|+..- ...+ .....+++|.+.+ + +|+++++...-+. +........-....|+.|++.++
T Consensus 80 ~-~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~----~T~lt~~~~~~~~-~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 80 N-ERIVYTDVFDDPSLS-GEMTMTWTLSPVS-G----GTDVTIVQSGIPD-GIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred C-CEEEEEEEecCCCCC-ceEEEEEEEEecC-C----CEEEEEEEeCCCc-hhhhhHHHHHHHHHHHHHHHHhc
Confidence 5 688887542 2223 2346788998876 4 7999999875432 11122333334444555555443
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.76 E-value=5.1e-07 Score=66.43 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=67.7
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccc--cceeeEE-ecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLP--NLDTCYL-VEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQR 88 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P--~v~~~~~-~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~ 88 (172)
.++..| +||+++||+++.|-+.+.+|++ ....+.. .+...| |..|.... .| +|..-...=++++++| ++
T Consensus 3 ~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~--~~--~g~~~~~~g~v~e~~p-~~ 74 (139)
T cd08894 3 VTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPG--GRWRFVMH--GP--DGTDYPNRIVFLEIEP-PE 74 (139)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCC--CEEEEEEE--CC--CCCEecceEEEEEEcC-CC
Confidence 467889 9999999999999999999984 2222111 122222 33444332 23 2321123458999999 47
Q ss_pred eEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEec
Q 030759 89 WLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADP 132 (172)
Q Consensus 89 ~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p 132 (172)
+|.|+....+. ....+++|.|.+ + +|+++.+..+.+
T Consensus 75 ~l~~t~~~~~~---~~~v~~~~~~~~-~----gT~ltl~~~~~~ 110 (139)
T cd08894 75 RIVYDHGSGPP---RFRLTVTFEEQG-G----KTRLTWRQVFPT 110 (139)
T ss_pred EEEEEeccCCC---cEEEEEEEEECC-C----CEEEEEEEEcCC
Confidence 89998754421 245788999876 5 799999977643
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=5.1e-07 Score=65.91 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCccccccccee--eEEecCCCCCCc-eEEEEeeccCCCCCCceeeEEEEEEEEecCCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDT--CYLVEGVPGQPG-LVRYCASSKSDGHEVTIRWVKEKLILMDPIQR 88 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~--~~~~~g~~g~~G-~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~ 88 (172)
.+++.| +||+++||++++|-+.+.+|++.... +...+. +-.+| ..+.... .+ +++..-.+.=+++++++ ++
T Consensus 3 ~~~~~~-~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~-d~~~GG~~~~~~~--~~-~g~~~~~~~g~~~ei~p-~~ 76 (133)
T cd08897 3 TVETTV-DAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEN-DLRVGGKFSYRME--AK-DGSMGFDFEGTYTEVEP-HK 76 (133)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhCCCCCCCcccceeee-cCCcCCEEEEEEE--cC-CCCcccccceEEEEECC-CC
Confidence 467888 99999999999999999999643211 111122 12233 3444421 12 22110124667889999 47
Q ss_pred eEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHH
Q 030759 89 WLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 89 ~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le 157 (172)
++.|+..++ ...+++|.+.+ + +|+++-+ +.+......+....-...+|..|++.+|
T Consensus 77 ~l~~~~~~~------~~v~~~l~~~~-~----gT~l~l~--~~~~~~~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG------REVEVEFTEEG-D----GTKVVET--FDAENENPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC------CEEEEEEEECC-C----CEEEEEE--ECCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999996432 35789999875 4 7999876 4443222233444445666666666654
No 33
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.68 E-value=2.7e-06 Score=62.72 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=78.1
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCccccccc-----ceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPN-----LDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPI 86 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~-----v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~ 86 (172)
.++..| +||+++||++++|-+.+.+|+.. +..+.. +...| |..+.... .+ +|......=+++++++.
T Consensus 3 ~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~-d~~~G--g~~~~~~~--~~--~g~~~~~~g~~~~~~p~ 74 (143)
T cd08900 3 TLERTY-PAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF-DFRVG--GREVSRGG--PK--GGPEITVEARYHDIVPD 74 (143)
T ss_pred EEEEEe-CCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE-ecCCC--CEEEEEEE--CC--CCCEEeeeEEEEEecCC
Confidence 356788 99999999999999999999943 222222 22122 34454432 12 33222356688999994
Q ss_pred CCeEEEEEec--CCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCC-CChhhHHHHHHHHHHHHHHHHH
Q 030759 87 QRWLSYEVTD--NNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEG-WKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 87 ~~~~~y~v~~--~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g-~~~~~~~~~~~~~l~~L~~~le 157 (172)
+++.|+-.. ...+......+++|.+.+ + +|+++.+...-...+ ........-....|+.|++.|+
T Consensus 75 -~~l~~t~~~~~~~~~~~~s~v~~~l~~~~-~----gT~l~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 75 -ERIVYTYTMHIGGTLLSASLATVEFAPEG-G----GTRLTLTEQGAFLDGDDDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred -ceEEEEEeeccCCccccceEEEEEEEECC-C----CEEEEEEEEEecccccchhhhHHHHHHHHHHHHHHHHh
Confidence 788777532 222222345789999875 4 799998866532211 1122333445555566665554
No 34
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.66 E-value=7.3e-07 Score=66.61 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=72.6
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEE
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYE 93 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~ 93 (172)
+..| ++|+++||++|.|++.+..=+|++.+.+. .|+ ...+.+|.-.. | -.+.. .-+=++..+|+.+++++.+
T Consensus 6 ~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~-~g~-e~~~~v~l~ig---~-l~~~~-~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 6 TFRV-AAPPEAVWEFLNDPEQVAACIPGVQSVET-NGD-EYTAKVKLKIG---P-LKGTF-SGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhhcCCcceeee-cCC-eEEEEEEEeec---c-eeEEE-EEEEEEccccCCCcEEEEE
Confidence 5678 99999999999999999888999987655 342 22222332221 1 11211 1344666667878888888
Q ss_pred EecCC-CcceeEEEEEEEEeecCCCCCCccEEEEEEEEec
Q 030759 94 VTDNN-LGIKSYVATIKVFPINFDNGMKGCRIEWSYVADP 132 (172)
Q Consensus 94 v~~~~-~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p 132 (172)
-..+- -..-...+.++|.|.++ +|++.|.++.+-
T Consensus 78 g~G~~~~g~~~~~~~v~l~~~g~-----gt~v~w~~~~~~ 112 (146)
T COG3427 78 GSGGGAAGFADGTVDVQLEPSGE-----GTRVNWFADANV 112 (146)
T ss_pred eecccccceeeeeeEEEEEEcCC-----CcEEEEEEEccc
Confidence 77632 23556677888888876 599999999884
No 35
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.62 E-value=4.9e-07 Score=67.19 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=89.8
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSY 92 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y 92 (172)
.+..+ +.+|+++++++.|...||+++|.+..+.+.+.++...-+--.+.+ .|..+++.-|.+ .++..+.+.=
T Consensus 6 ~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~------k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 6 RTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGF------KGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred eeeec-cCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEh------hheeeeeeeeee-ecCchhhhhh
Confidence 35666 999999999999999999999999999887765444322222222 232223333432 3454556666
Q ss_pred EEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 030759 93 EVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKMEHAS 160 (172)
Q Consensus 93 ~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le~~~ 160 (172)
.+++|+ ++...+++++.|.+++ .|.|+-..+|+..+-.....+..++...-..|.+.+++.+
T Consensus 78 ~l~~GP--Fk~L~~~W~F~pl~~~----~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA 139 (146)
T COG2867 78 KLIDGP--FKYLKGGWQFTPLSED----ACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRA 139 (146)
T ss_pred hhhcCC--hhhhcCceEEEECCCC----ceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666664 5778899999998877 9999999999976433333445555555556666555543
No 36
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.58 E-value=1.8e-06 Score=63.40 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=75.6
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+.++.| +||+++||+++++-+.+.+|++.-...+...| |.++.... . .++. +.=++++++|. +++.
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G-----g~~~~~~~---~-~~~~---~~g~~~~~~p~-~~l~ 68 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG-----KTVTWDWE---M-YGAS---VPVNVLEIEPN-KRIV 68 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccccCCCccccCC-----CEEEEEEE---c-cCCc---eEEEEEEEcCC-CEEE
Confidence 467888 99999999999999999998754222222122 33443221 1 2222 45578999984 7899
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCC-Chhh---HHHHHHHHHHHHHHHHHH
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGW-KFED---FASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~-~~~~---~~~~~~~~l~~L~~~le~ 158 (172)
|+-.... + ....+++|.+.+++ +|+++-+-..-|.... .... ...-....|+.|+..+|.
T Consensus 69 ~~w~~~~-~--~s~v~~~l~~~~~g----gT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 69 IEWGDPG-E--PTTVEWTFEELDDG----RTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EEecCCC-C--CEEEEEEEEECCCC----cEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 9865432 1 24578999998755 8999888553332111 0011 113344555666666654
No 37
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.58 E-value=1.4e-06 Score=62.00 Aligned_cols=122 Identities=15% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEecCC
Q 030759 19 SITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVTDNN 98 (172)
Q Consensus 19 ~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~~~~ 98 (172)
+||+++||+++++.+.+.+|.+ ...... +...| |..+... + +++. -...=+++++++. ++|.|+....+
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~-~~~~G--g~~~~~~----~-~g~~-~~~~~~v~~~~p~-~~i~~~~~~~~ 69 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEM-DFRPG--GSFRFMD----P-DGGE-FGFDGTVLEVEPP-ERIVFTWRMPD 69 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEE-ECSTT--EEEEEEE----T-TSEE-EEEEEEEEEEETT-TEEEEEEEEET
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCccee-eeecC--CEEEEEe----c-CCCC-ceeeEEEEEEeCC-EEEEEEEEccC
Confidence 6999999999999999999932 111111 11111 3566522 2 2332 1344469999995 78888865443
Q ss_pred Cc-ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhh-HHHHHHHHHHHHHHHHH
Q 030759 99 LG-IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFED-FASHIDYSLKFMTKKME 157 (172)
Q Consensus 99 ~p-~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~~~~~~~~l~~L~~~le 157 (172)
.+ -.....+++|.+ .++ +|+++-+..--+.... .+. ...-....|..|++.||
T Consensus 70 ~~~~~~~~v~~~~~~-~~~----~T~l~~~~~~~~~~~~-~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 70 DPDGPESRVTFEFEE-EGG----GTRLTLTHSGFPDDDE-EEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp SSSCEEEEEEEEEEE-ETT----EEEEEEEEEEEHSHHH-HHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEEE-cCC----cEEEEEEEEcCCccHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 22 345678899999 555 8999988754443111 111 44455555566665554
No 38
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.56 E-value=3.2e-06 Score=62.62 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=65.0
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccc-c---ceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLP-N---LDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQ 87 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P-~---v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~ 87 (172)
.+++.| +||+++||+++.|-+.+.+|++ . +..++. +...| |..+.... .+ +|..-.+.=+++++||.
T Consensus 3 ~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~-d~~~G--G~~~~~~~--~~--~g~~~~~~g~v~~i~p~- 73 (146)
T cd08896 3 VLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL-DLRPG--GAFRTVMR--GP--DGEEFPNPGCFLEVVPG- 73 (146)
T ss_pred EEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEE-EeecC--cEEEEEEE--CC--CCCEecceEEEEEEeCC-
Confidence 357888 9999999999999999999985 2 222322 11122 34555432 12 23211245679999995
Q ss_pred CeEEEEEe--cCCCcc-e-eEEEEEEEEeecCCCCCCccEEEEEEEE
Q 030759 88 RWLSYEVT--DNNLGI-K-SYVATIKVFPINFDNGMKGCRIEWSYVA 130 (172)
Q Consensus 88 ~~~~y~v~--~~~~p~-~-~~~~t~~v~p~~~~~~~~~t~v~W~~~~ 130 (172)
++|.|+-. ++..+. . ....+++|.+.+ + +|+++.+..+
T Consensus 74 ~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~-~----gT~Ltl~~~~ 115 (146)
T cd08896 74 ERLVFTDALTPGWRPAEKPFMTAIITFEDEG-G----GTRYTARARH 115 (146)
T ss_pred CEEEEEEeecCCcCCCCCCcEEEEEEEEecC-C----cEEEEEEEEe
Confidence 78888632 221111 1 135689999876 4 7999987554
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.52 E-value=4.9e-06 Score=61.83 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=63.6
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCccccccc-c-------eeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPN-L-------DTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILM 83 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~-v-------~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~ 83 (172)
+.+++| +||+++||++++| .+.+|++. - ..|++ +...| |..+... + +|.. ...=+++++
T Consensus 3 ~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~-d~~~G--G~~~~~~----~--~g~~-~~~g~v~~v 69 (149)
T cd08891 3 RKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF-EPRAG--GRWYEIG----E--DGTE-CEWGTVLAW 69 (149)
T ss_pred EEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE-cccCC--cEEEEec----C--CCcE-eceEEEEEE
Confidence 457888 9999999999998 47889852 1 23333 22222 3344322 2 2321 235688999
Q ss_pred ecCCCeEEEEEecC-CC-cce--eEEEEEEEEeecCCCCCCccEEEEEEEEe
Q 030759 84 DPIQRWLSYEVTDN-NL-GIK--SYVATIKVFPINFDNGMKGCRIEWSYVAD 131 (172)
Q Consensus 84 D~~~~~~~y~v~~~-~~-p~~--~~~~t~~v~p~~~~~~~~~t~v~W~~~~~ 131 (172)
+|. ++|+|+-... .. +.. .-..+++|.+.+++ +|+++-+...-
T Consensus 70 ~p~-~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~----gT~ltl~~~~~ 116 (149)
T cd08891 70 EPP-SRLVFTWQINADWRPDPDKASEVEVRFEAVGAE----GTRVELEHRGF 116 (149)
T ss_pred cCC-CEEEEEeccCCCcCcCCCCceEEEEEEEECCCC----CeEEEEEEecc
Confidence 995 7888875411 11 111 24678999998745 79999886654
No 40
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.51 E-value=3.6e-06 Score=62.30 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=64.7
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCe-EEE
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRW-LSY 92 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~-~~y 92 (172)
+.+| ++|+++||++|.|.+.+..=+|++...+... + ..-+.++.- + .| -.+.. ..+=++.+.|+..+. +..
T Consensus 2 s~~v-~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~-~~~~~~~v~-v--G~-i~~~~-~g~~~~~~~~~~~~~~~~~ 73 (140)
T PF06240_consen 2 SFEV-PAPPEKVWAFLSDPENLARCIPGVESIEKVG-D-EYKGKVKVK-V--GP-IKGTF-DGEVRITEIDPPESYTLEF 73 (140)
T ss_dssp EEEE-CS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T-EEEEEEEEE-S--CC-CEEEE-EEEEEEEEEETTTEEEEEE
T ss_pred cEEe-cCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c-EEEEEEEEE-e--cc-EEEEE-EEEEEEEEcCCCcceEeee
Confidence 5678 9999999999999999988899998887655 2 111222211 1 11 11111 134466777776443 333
Q ss_pred EEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 93 EVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 93 ~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+..+.... ....+.+++...+++ +|+|.|+.+++..
T Consensus 74 ~g~g~~~~-~~~~~~~~~~~~~~~----~T~v~~~~~~~~~ 109 (140)
T PF06240_consen 74 EGRGRGGG-SSASANITLSLEDDG----GTRVTWSADVEVG 109 (140)
T ss_dssp EEEECTCC-EEEEEEEEEEECCCT----CEEEEEEEEEEEE
T ss_pred eccCCccc-eEEEEEEEEEcCCCC----CcEEEEEEEEEEc
Confidence 33332222 334566777776666 6999999999853
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.45 E-value=1.3e-05 Score=58.03 Aligned_cols=121 Identities=10% Similarity=0.093 Sum_probs=73.5
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
.+++.| +||+++||+++++-+.+.+|+...... +...| |..+.. +|. +.=+++++++. ++++
T Consensus 3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~~~~~~---d~~~G--G~~~~~--------~g~---~~g~~~~i~p~-~~l~ 64 (126)
T cd08892 3 SLTETF-QVPAEELYEALTDEERVQAFTRSPAKV---DAKVG--GKFSLF--------GGN---ITGEFVELVPG-KKIV 64 (126)
T ss_pred EEEEEE-CCCHHHHHHHHCCHHHHHhhcCCCcee---cCCCC--CEEEEe--------CCc---eEEEEEEEcCC-CEEE
Confidence 457888 999999999999999999998532222 22222 334432 232 45578999984 6787
Q ss_pred EEEecCCCcc-eeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHH-HHHHHHHHHHHH
Q 030759 92 YEVTDNNLGI-KSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHI-DYSLKFMTKKME 157 (172)
Q Consensus 92 y~v~~~~~p~-~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~-~~~l~~L~~~le 157 (172)
|+-.-...|- .....++.|.+.+ + +|+++-+...-|.. ..+....-. ...++.|++.|+
T Consensus 65 ~~w~~~~~~~~~~s~v~~~l~~~~-~----gT~ltl~~~g~~~~--~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 65 QKWRFKSWPEGHYSTVTLTFTEKD-D----ETELKLTQTGVPAG--EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred EEEEcCCCCCCCcEEEEEEEEECC-C----CEEEEEEEECCCCc--hHHHHHhhHHHHHHHHHHHHhC
Confidence 7654322221 2346788999874 4 79998887766542 222222222 234556665543
No 42
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.27 E-value=0.00011 Score=58.03 Aligned_cols=120 Identities=7% Similarity=-0.058 Sum_probs=75.6
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCC--CCCceeeEEEEEEEEecCCCeEE
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDG--HEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~--~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+| ++|+++||++|.|....++|.+.+.++++++--+....-++..+-.+.|. .+.. ++.-+....+.+...+.
T Consensus 50 e~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RD--fV~l~~~~~~~~~~vi~ 126 (205)
T cd08874 50 AGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRD--FCCLQVEAKEGELSVVA 126 (205)
T ss_pred EEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCe--EEEEEEEEECCCcEEEE
Confidence 4477 99999999999999999999999999998764333333455554212221 2222 33333333333333333
Q ss_pred EEEecC-CCc--------ceeEEEEEEEEee---cCCCCCCccEEEEEEEEecCCCCChhh
Q 030759 92 YEVTDN-NLG--------IKSYVATIKVFPI---NFDNGMKGCRIEWSYVADPFEGWKFED 140 (172)
Q Consensus 92 y~v~~~-~~p--------~~~~~~t~~v~p~---~~~~~~~~t~v~W~~~~~p~~g~~~~~ 140 (172)
-+-++. .+| ...+.+-+.+.|. +++ +|+|++....+|..|..+..
T Consensus 127 ~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~----~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 127 CQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQ----YTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred EEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCC----cEEEEEEEEECCCCCCCCHH
Confidence 333333 233 3356677899998 766 89999999999974333333
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=6e-05 Score=56.51 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=59.3
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
..+.+| +||+++||++++|-+.+.+|+. -.-++. +...| |..|..-- .+ ++..-.+.-++.++++. ++|.
T Consensus 11 ~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~-d~r~g--g~~~~~~~--~~--~g~~~~~~~~~~~v~p~-~rIv 80 (149)
T COG3832 11 EIERLI-DAPPEKVFEALTDPELLARWFM-PGGAEF-DARTG--GGERVRFR--GP--DGPVHSFEGEYLEVVPP-ERIV 80 (149)
T ss_pred EEEEee-cCCHHHHHHHhcCHHHHHhhcC-CCCCcc-ceecC--CceEEeee--cC--CCCeeecceEEEEEcCC-cEEE
Confidence 456788 9999999999999999999997 221211 11111 11222211 12 33222467789999995 6666
Q ss_pred EEEec--CCCcceeEEEEEEEEeecCC
Q 030759 92 YEVTD--NNLGIKSYVATIKVFPINFD 116 (172)
Q Consensus 92 y~v~~--~~~p~~~~~~t~~v~p~~~~ 116 (172)
|+-.- ...|...-..+++|.+..+|
T Consensus 81 ~tw~~~~~~~~~~~~~v~~~l~~~~~g 107 (149)
T COG3832 81 FTWDFDEDGEPFLKSLVTITLTPEDDG 107 (149)
T ss_pred EEeccCCCCCcccCceEEEEEEEecCC
Confidence 66544 33343455789999998776
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=98.14 E-value=6e-05 Score=55.28 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEecCC
Q 030759 19 SITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVTDNN 98 (172)
Q Consensus 19 ~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~~~~ 98 (172)
+||+++||+++.|-+.+.+|+-+ ..++. +...| |..|.+. +. +.=+++++|+. ++|.|+-.-.+
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~-d~~~G--G~f~~~~--------~~---~~G~~~ev~pp-~rlv~tw~~~~ 65 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLSLG-SPAEM-DAKVG--GKFSLFN--------GS---VEGEFTELEKP-KKIVQKWRFRD 65 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHhcC-CCccc-cCCcC--CEEEEec--------Cc---eEEEEEEEcCC-CEEEEEEecCC
Confidence 89999999999998888888521 12222 22122 2355432 21 45578899995 67776644322
Q ss_pred C-cceeEEEEEEEEeecCCCCCCccEEEEEEE
Q 030759 99 L-GIKSYVATIKVFPINFDNGMKGCRIEWSYV 129 (172)
Q Consensus 99 ~-p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~ 129 (172)
. +-.....++++.+.+++ +|+++-+..
T Consensus 66 ~~~~~~s~vt~~~~~~~~g----~T~lt~~~~ 93 (132)
T PTZ00220 66 WEEDVYSKVTIEFRAVEED----HTELKLTQT 93 (132)
T ss_pred CCCCCceEEEEEEEeCCCC----cEEEEEEEe
Confidence 1 11123578999987666 899998877
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.94 E-value=0.0014 Score=52.90 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=72.5
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEE--EecCC-Ce
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLIL--MDPIQ-RW 89 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~--~D~~~-~~ 89 (172)
+..++ ++|+++++++|.|.+..++|.+.+.++++++--+...+-++...-.+.|-.+.. ++.-+-.. .+... ..
T Consensus 81 ~e~~v-d~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RD--fV~~~s~~~~~~~~~~~~ 157 (235)
T cd08873 81 VELKV-QTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPND--FVLLVSRRKPATDGDPYK 157 (235)
T ss_pred EEEEe-cCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCce--EEEEEEEEeccCCCCeEE
Confidence 44567 999999999999999999999999999987632222333444431111212222 23222222 22221 23
Q ss_pred EEEEEec-CCCc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 90 LSYEVTD-NNLG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 90 ~~y~v~~-~~~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+..+-+. ..+| ...+.+-+.+.|.+++ +|.|+|....+|-
T Consensus 158 I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~----~t~VtY~~~~dPg 205 (235)
T cd08873 158 VAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT----CTEVSYYNETNPK 205 (235)
T ss_pred EEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC----cEEEEEEEEcCCC
Confidence 3444344 2222 5577889999999887 9999999999984
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.91 E-value=0.001 Score=52.50 Aligned_cols=136 Identities=9% Similarity=0.124 Sum_probs=79.4
Q ss_pred EEEEecCCCHHHHH-HHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCC---CCCCceeeEEEEEEEEecCCC
Q 030759 13 ESIESASITAEQVW-ACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSD---GHEVTIRWVKEKLILMDPIQR 88 (172)
Q Consensus 13 vs~~I~~Ap~e~VW-~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~---~~~g~~~~~~E~l~~~D~~~~ 88 (172)
...+| ++|+++++ .++-|.+..++|.+.+.++++++-.+...-.++.... ..| -.+.. ++.-+....+..+.
T Consensus 53 ~e~~i-~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~-p~p~~~vs~RD--~V~~~~~~~~~~~~ 128 (209)
T cd08905 53 LEVVV-DQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAA-ETAGNVVGPRD--FVSVRCAKRRGSTC 128 (209)
T ss_pred EEEEe-cCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEec-cCCCCccCccc--eEEEEEEEEcCCcE
Confidence 45577 99999999 7777999999999999998876542211112343322 111 11122 23333333333332
Q ss_pred e-EEEEEecCCCc-------ceeEEEEEEEEeecC--CCCCCccEEEEEEEEecCCCCChhhH-----HHHHHHHHHHHH
Q 030759 89 W-LSYEVTDNNLG-------IKSYVATIKVFPINF--DNGMKGCRIEWSYVADPFEGWKFEDF-----ASHIDYSLKFMT 153 (172)
Q Consensus 89 ~-~~y~v~~~~~p-------~~~~~~t~~v~p~~~--~~~~~~t~v~W~~~~~p~~g~~~~~~-----~~~~~~~l~~L~ 153 (172)
. +..++....+| .....+.+.++|.++ + +|.++|.+..+|. |..+..+ ....-..|..|+
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~----~t~v~~~~~~Dpk-G~iP~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPS----KTKLTWLLSIDLK-GWLPKSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCC----ceEEEEEEeecCC-CCCCHHHHHHHhHHhHHHHHHHHH
Confidence 2 22332222233 345667889999865 5 8999999999997 5444432 233344555666
Q ss_pred HHHH
Q 030759 154 KKME 157 (172)
Q Consensus 154 ~~le 157 (172)
+.++
T Consensus 204 ~~~~ 207 (209)
T cd08905 204 QRMA 207 (209)
T ss_pred HHHh
Confidence 6554
No 47
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.89 E-value=0.0034 Score=47.50 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=77.7
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLS 91 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~ 91 (172)
+...+| ++|+++|++++.|.+..++|.|.+..+++++..+.....++...-.+.|-.+.. ++--+-...+++ ..+.
T Consensus 42 k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rd--fv~~~~~~~~~~-~~~~ 117 (193)
T cd00177 42 KAEGVI-PASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRD--FVYLRRRRKLDD-GTYV 117 (193)
T ss_pred EEEEEE-CCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCcc--EEEEEEEEEcCC-CeEE
Confidence 456677 999999999999999999999999999887653222222333321112211111 222222222332 2222
Q ss_pred EEE--ecCC-Cc-----ce--eEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHHHH
Q 030759 92 YEV--TDNN-LG-----IK--SYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMTKKME 157 (172)
Q Consensus 92 y~v--~~~~-~p-----~~--~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~~~le 157 (172)
.-. ++.+ .| ++ .+.+.+.++|.+++ +|++++...++|....+...+...+......+.+.+.
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~----~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG----KTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC----CEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHH
Confidence 211 2221 22 22 23456888999776 9999999999997323333334444444444444443
No 48
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.86 E-value=0.0024 Score=50.70 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=80.8
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeE-EE
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWL-SY 92 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~-~y 92 (172)
+.+|.++|++.+++++.|.+..++|.+.+.+++.++.-+..---++...-.+.|-.+.. ++.-+...-++....+ ..
T Consensus 52 ~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RD--fV~~r~~~~~~~~~vi~~~ 129 (222)
T cd08871 52 SAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRD--FVNLRSWLEFGGEYIIFNH 129 (222)
T ss_pred EEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCe--EEEEEEEEeCCCEEEEEec
Confidence 34443799999999999998899999999998887542222112233221122212232 3333333333321111 22
Q ss_pred EEecCCCc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhH-----HHHHHHHHHHHHHHHHHhh
Q 030759 93 EVTDNNLG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDF-----ASHIDYSLKFMTKKMEHAS 160 (172)
Q Consensus 93 ~v~~~~~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-----~~~~~~~l~~L~~~le~~~ 160 (172)
++.....| ...+.+-+.++|.+++ +|.|+|....+|. |..+..+ ....-..|+.|++.++++-
T Consensus 130 sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~----~t~vt~~~~~Dp~-G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 130 SVKHKKYPPRKGFVRAISLLTGYLIRPTGPK----GCTLTYVTQNDPK-GSLPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred cccCCCCCCCCCeEEeEEEccEEEEEECCCC----CEEEEEEEecCCC-CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22222233 2245667889999877 8999999999997 4443322 2334456667777666554
No 49
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.81 E-value=0.0033 Score=49.38 Aligned_cols=140 Identities=13% Similarity=0.137 Sum_probs=79.8
Q ss_pred EEEEecCCCHHHHHH-HHhcCCCcccccccceeeEEecCCCCCCceEEEEeecc--CCCCCCceeeEEEEEEEEecCCCe
Q 030759 13 ESIESASITAEQVWA-CLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSK--SDGHEVTIRWVKEKLILMDPIQRW 89 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~-~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~--~~~~~g~~~~~~E~l~~~D~~~~~ 89 (172)
+..+| ++|+++|.. ++.|.+..++|.+.+..+++++.-++...-+..+.... .|-.+.. ++.-+....++....
T Consensus 52 ~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD--fV~~r~~~~~~~~~~ 128 (208)
T cd08868 52 LTGVL-DCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD--FVSLRHWGIRENCYL 128 (208)
T ss_pred EEEEE-cCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccc--eEEEEEEEecCCeEE
Confidence 35577 999999986 56799999999999999888754322222233333110 1101222 233333333443322
Q ss_pred EEEEEecC-CCc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh-----hHHHHHHHHHHHHHHHH
Q 030759 90 LSYEVTDN-NLG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-----DFASHIDYSLKFMTKKM 156 (172)
Q Consensus 90 ~~y~v~~~-~~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-----~~~~~~~~~l~~L~~~l 156 (172)
+...-++. ..| ...+.+.+.++|.+++ .++|.|+|....+|. |..+. ......-..+++|++.+
T Consensus 129 i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~--~~~t~v~~~~~~Dp~-G~iP~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 129 SSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNN--PNKCNFTWLLNTDLK-GWLPQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEeccCCCCCCCCCeEEEeccccEEEEEECCCC--CCceEEEEEEEECCC-CCCcceeeehhhHHHHHHHHHHHHHHH
Confidence 33332332 222 3345577889998642 128999999999997 44332 22344445666777766
Q ss_pred HH
Q 030759 157 EH 158 (172)
Q Consensus 157 e~ 158 (172)
++
T Consensus 206 ~~ 207 (208)
T cd08868 206 AT 207 (208)
T ss_pred hh
Confidence 54
No 50
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.80 E-value=0.0026 Score=49.72 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=76.8
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCC--Ce
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQ--RW 89 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~--~~ 89 (172)
+++.+| ++++++|+..+-|. -++|.+.+.++++++--+...--++...-.+.|-.+.. ++.-+....+..+ ..
T Consensus 47 K~~~~v-~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD--fV~~r~~~~~~~~g~~~ 121 (197)
T cd08869 47 RASTEV-EAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD--YVVLRTWRTDLPKGACV 121 (197)
T ss_pred EEEEEe-CCCHHHHHHHHHHH--HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce--EEEEEEEEecCCCCcEE
Confidence 456777 99999999988764 38999999999887642211222444332122222222 3333333433332 23
Q ss_pred EEEEEecC--CCc-----ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh----hHHHHHHHHHHHHHH
Q 030759 90 LSYEVTDN--NLG-----IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE----DFASHIDYSLKFMTK 154 (172)
Q Consensus 90 ~~y~v~~~--~~p-----~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~----~~~~~~~~~l~~L~~ 154 (172)
+.++-++. ..| ...+.+-+.++|.+++ +|+|+|....+|. |..+. .+..++-..|+.|..
T Consensus 122 i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~----~t~vty~~~~Dp~-G~iP~wl~N~~~~~~~~~~~~l~~ 192 (197)
T cd08869 122 LVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSG----KSRVTHICRVDLR-GRSPEWYNKVYGHLCARELLRIRD 192 (197)
T ss_pred EEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCC----CeEEEEEEEECCC-CCCCceeecchHhHHHHHHHHHHh
Confidence 33333422 232 2345577889999877 9999999999996 44433 333444444444443
No 51
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.77 E-value=0.0028 Score=51.19 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=67.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCC-CCCCceEEEEeeccC-CCCCCceeeEEEEEEEEec-CCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGV-PGQPGLVRYCASSKS-DGHEVTIRWVKEKLILMDP-IQR 88 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~-~g~~G~vR~~~~~~~-~~~~g~~~~~~E~l~~~D~-~~~ 88 (172)
++..++ ++|++++.++|.|.+..++|.+.+.+|++++-- +.. - +......+. |-.+.. ++.-+-..... .+.
T Consensus 81 k~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~-~-vY~~~~pPw~Pvk~RD--~V~~~s~~~~~~dg~ 155 (236)
T cd08914 81 WVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDD-Q-IYHITCPIVNNDKPKD--LVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCc-C-EEEEecCCCCCCCCce--EEEEEEEEecCCCCC
Confidence 345578 999999999999999999999999999887532 222 1 444442222 212222 22211111112 222
Q ss_pred eE--EEEEecC-CCc-------cee-EEEEEEEEeecCCCCCCccEEEEEEEEec
Q 030759 89 WL--SYEVTDN-NLG-------IKS-YVATIKVFPINFDNGMKGCRIEWSYVADP 132 (172)
Q Consensus 89 ~~--~y~v~~~-~~p-------~~~-~~~t~~v~p~~~~~~~~~t~v~W~~~~~p 132 (172)
.+ .-.-+.. .+| +.. ..|. .++|.+++ +|.|+|....+|
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~----~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSN----SCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCC----cEEEEEEEEcCC
Confidence 22 2222333 333 334 3444 88999887 999999999998
No 52
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.73 E-value=0.0072 Score=47.60 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=73.2
Q ss_pred eEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCC-CCceEEEEeeccCCCCCCceeeEEEEEEEEe-cCCC
Q 030759 11 GKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPG-QPGLVRYCASSKSDGHEVTIRWVKEKLILMD-PIQR 88 (172)
Q Consensus 11 g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g-~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D-~~~~ 88 (172)
=++..++.++|++.+.+++.|.+..++|.+.+.++++++-... +...++...-.+.|-.+.. ++--+-...+ +...
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~~~~~~~ 129 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDRE--YVIARRLWESDDRSY 129 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCce--EEEEEEEEEcCCCEE
Confidence 3445566367999999999999999999999988888754321 2233444432223323333 3333333344 2222
Q ss_pred eEEEEEecC-CC------cceeEEEEEEEEee--cCCCCCCccEEEEEEEEecC
Q 030759 89 WLSYEVTDN-NL------GIKSYVATIKVFPI--NFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 89 ~~~y~v~~~-~~------p~~~~~~t~~v~p~--~~~~~~~~t~v~W~~~~~p~ 133 (172)
.+....+.. .. .+..+.+.+.++|. +++ +|.+++++..+|-
T Consensus 130 ~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~----~t~~~~~~~~dp~ 179 (209)
T cd08870 130 VCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQ----GSACEVTYFHNPD 179 (209)
T ss_pred EEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCC----ceEEEEEEEECCC
Confidence 233333332 12 25678889999998 665 8999999999985
No 53
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.64 E-value=0.0077 Score=47.64 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=75.4
Q ss_pred EEEEEecCCCHHHHH-HHHhcCCCcccccccceeeEEecCCCCCCceEEEEeecc--CCCCCCceeeEEEEEEEEecCCC
Q 030759 12 KESIESASITAEQVW-ACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSK--SDGHEVTIRWVKEKLILMDPIQR 88 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW-~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~--~~~~~g~~~~~~E~l~~~D~~~~ 88 (172)
++..+| ++|+++++ .++.|.+..++|.+.+.+|++++-.+..---++.+.... +|-.+.. ++.-+-..-+....
T Consensus 52 k~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RD--fV~~r~~~~~~~~~ 128 (209)
T cd08906 52 ILKAFM-QCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRD--FVNVRRIERRRDRY 128 (209)
T ss_pred EEEEEE-cCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCc--eEEEEEEEecCCcE
Confidence 456677 99999998 688999999999999999988753211111123332200 0112222 33333333333332
Q ss_pred -eEEEEEecCCCc-------ceeEEEEEEEEe--ecCCCCCCccEEEEEEEEecCCCCChhhH-----HHHHHHHHHHHH
Q 030759 89 -WLSYEVTDNNLG-------IKSYVATIKVFP--INFDNGMKGCRIEWSYVADPFEGWKFEDF-----ASHIDYSLKFMT 153 (172)
Q Consensus 89 -~~~y~v~~~~~p-------~~~~~~t~~v~p--~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-----~~~~~~~l~~L~ 153 (172)
.+..++....+| ...+..-+-+.+ .+++ +|.++|....+|. |..+.-+ ....-.-|..|+
T Consensus 129 i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~----~t~vt~~~~~Dp~-G~lP~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 129 VSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPS----VCTFIWILNTDLK-GRLPRYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred EEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCC----ceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233344333333 111122234444 4555 8999999999997 5544422 233444555666
Q ss_pred HHHH
Q 030759 154 KKME 157 (172)
Q Consensus 154 ~~le 157 (172)
+.++
T Consensus 204 ~~~~ 207 (209)
T cd08906 204 QRIR 207 (209)
T ss_pred HHHh
Confidence 6554
No 54
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.54 E-value=0.016 Score=45.71 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=72.7
Q ss_pred ecCCCHHHHHHHHhcCCCcccccccceeeEEecCC-CCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeE--EEE
Q 030759 17 SASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGV-PGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWL--SYE 93 (172)
Q Consensus 17 I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~-~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~--~y~ 93 (172)
+.++|++.+.+++-|.+..++|.+.+.++++++.. +.+.-.+....-.++|-.+.. ++--+-...|+.+..+ ...
T Consensus 53 ~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~~~~~~~~~i~~~ 130 (207)
T cd08911 53 FDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRD--YVYVRRYIIDEENKLIVIVSK 130 (207)
T ss_pred EcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCcc--EEEEEEEEEcCCCCEEEEEEe
Confidence 33999999999999999999999999998887642 211112233222222323333 4555656666654331 111
Q ss_pred EecC-CC-------cceeEEEEEEEEeec---CCCCCCccEEEEEEEEecCCCCChh
Q 030759 94 VTDN-NL-------GIKSYVATIKVFPIN---FDNGMKGCRIEWSYVADPFEGWKFE 139 (172)
Q Consensus 94 v~~~-~~-------p~~~~~~t~~v~p~~---~~~~~~~t~v~W~~~~~p~~g~~~~ 139 (172)
-++. .. .+..+.+.+.++|.+ ++ +|.+.+++..+|- |..+.
T Consensus 131 sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~----~~~~~~~~~~dPg-G~IP~ 182 (207)
T cd08911 131 AVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP----GFEFVLTYFDNPG-VNIPS 182 (207)
T ss_pred cCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC----CeEEEEEEEeCCC-CccCH
Confidence 2222 22 256788899999884 44 8999999888886 44333
No 55
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=97.52 E-value=0.011 Score=46.70 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=73.6
Q ss_pred EEEEecCCCHHHHHHHHhcCCCc--ccccccceeeEEecCCCCCCceEEEEeeccCCC----CCCceeeEEEEEEEEecC
Q 030759 13 ESIESASITAEQVWACLEDFCNA--HKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDG----HEVTIRWVKEKLILMDPI 86 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~--~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~----~~g~~~~~~E~l~~~D~~ 86 (172)
...+| +++++++++++-|..+. ++|.+.+.++++++--+....-+|... +.|+ .... ++.-+.....++
T Consensus 50 ~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~--p~~~~~~vs~RD--fV~~~~~~~~~d 124 (208)
T cd08903 50 GEGIV-YATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVT--PSAAMKIISPRD--FVDVVLVKRYED 124 (208)
T ss_pred EEEEe-cCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEec--chhcCCCcCCCc--eEEEEEEEecCC
Confidence 56677 99999999999877664 899999999988764332233344422 1110 1111 222222222232
Q ss_pred C-CeEEEEEecC-CCc-----cee----EEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhH-H----HHHHHHHH
Q 030759 87 Q-RWLSYEVTDN-NLG-----IKS----YVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDF-A----SHIDYSLK 150 (172)
Q Consensus 87 ~-~~~~y~v~~~-~~p-----~~~----~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-~----~~~~~~l~ 150 (172)
+ -.+.+..++. .+| ++. ..+.++..|.+++ +|.++|.+..+|. |..+..+ . .....-|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~----~t~v~~~~~~Dpk-G~iP~~lvn~~~~~~~~~~~~ 199 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPD----KTQLVSFFQTDLS-GYLPQTVVDSFFPASMAEFYN 199 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCC----ceEEEEEEEeccC-CCcCHHHHHHHhhHHHHHHHH
Confidence 2 2233333444 233 222 1223433443555 8999999999997 5544432 2 33334555
Q ss_pred HHHHHHH
Q 030759 151 FMTKKME 157 (172)
Q Consensus 151 ~L~~~le 157 (172)
.|++.+.
T Consensus 200 ~Lr~~~~ 206 (208)
T cd08903 200 NLTKAVK 206 (208)
T ss_pred HHHHHHh
Confidence 6666554
No 56
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.51 E-value=0.0044 Score=48.90 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=76.6
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEee-ccCCCCCCceeeEEEEEEE------Ee
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCAS-SKSDGHEVTIRWVKEKLIL------MD 84 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~-~~~~~~~g~~~~~~E~l~~------~D 84 (172)
++..+| ++|++.+..++.|.+.+++|.|++.+++.++..+.. ..+=...+ .++|-. -+|-++. ++
T Consensus 49 k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~-~~v~y~~~~~PwPv~------~RD~v~~~~~~~~~~ 120 (215)
T cd08877 49 RMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRA-DKVCYLRVDLPWPLS------NREAVFRGFGVDRLE 120 (215)
T ss_pred EEEEEe-cCChhHeEEEEehhhhHhhhcccceeeEEEeecCCc-eEEEEEEEeCceEec------ceEEEEEEEEEeeec
Confidence 456678 999999999999999999999999888776432111 11111111 112211 2333322 22
Q ss_pred cCCCeEEEEE--ecC-C---------Cc--------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhh-H--
Q 030759 85 PIQRWLSYEV--TDN-N---------LG--------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFED-F-- 141 (172)
Q Consensus 85 ~~~~~~~y~v--~~~-~---------~p--------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~-- 141 (172)
+ +..+.-.+ ++. . +| .....+-+.++|.+++ +|.+++....+|...+.+.- +
T Consensus 121 ~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~----~t~v~~~~~~DP~g~~IP~~liN~ 195 (215)
T cd08877 121 E-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPT----KCYLRFVANVDPKMSLVPKSLLNF 195 (215)
T ss_pred c-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCC----CeEEEEEEEcCCCcccCCHHHHHH
Confidence 3 23333222 110 0 22 3466778899999987 99999999999974423332 2
Q ss_pred --HHHHHHHHHHHHHHH
Q 030759 142 --ASHIDYSLKFMTKKM 156 (172)
Q Consensus 142 --~~~~~~~l~~L~~~l 156 (172)
+.+....|..|.+.+
T Consensus 196 ~~k~~~~~~~~~l~k~~ 212 (215)
T cd08877 196 VARKFAGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 334444444444443
No 57
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.50 E-value=0.019 Score=45.40 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=78.1
Q ss_pred CceeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecC
Q 030759 7 SKWKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPI 86 (172)
Q Consensus 7 ~~w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~ 86 (172)
..|++ +.+| ++++++|...+-|- .+.|.+.+.++++++--+...--++...-.+.|-.... ++.-|....+..
T Consensus 52 ~~~r~--~~~i-~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD--~V~~Rs~~~~~~ 124 (204)
T cd08908 52 RLWRT--TIEV-PAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARD--YVVLRTWRTNLP 124 (204)
T ss_pred EEEEE--EEEe-CCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcE--EEEEEEEEEeCC
Confidence 34554 4566 99999999999765 78999999888776532211112333321122322222 333334333443
Q ss_pred CCeEEEE---EecCCCc-----ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHH
Q 030759 87 QRWLSYE---VTDNNLG-----IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKF 151 (172)
Q Consensus 87 ~~~~~y~---v~~~~~p-----~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~ 151 (172)
+..+.-. +....+| ...+.+.+.++|.++| +|+|++....+|. |..+.-+...+...++.
T Consensus 125 ~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g----~t~vtyi~~~DPg-G~iP~W~~N~~g~~~~~ 192 (204)
T cd08908 125 KGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSG----KSKLTYMCRIDLR-GHMPEWYTKSFGHLCAA 192 (204)
T ss_pred CCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCC----cEEEEEEEEeCCC-CCCcHHHHhhHHHHHHH
Confidence 3333222 3323344 3345677889999887 9999999999997 65566555555444433
No 58
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.47 E-value=0.0061 Score=49.38 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=68.3
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccC--CCCCCceeeEEEEEEEEec-CCC-
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKS--DGHEVTIRWVKEKLILMDP-IQR- 88 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~--~~~~g~~~~~~E~l~~~D~-~~~- 88 (172)
+..++ ++|+++++++|.|.+..++|.+.+.+|++++-.+..- .+..+..... |-.+.. ++.-.-..-+. ...
T Consensus 85 ~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RD--fV~~~s~~~~~~~g~~ 160 (240)
T cd08913 85 VEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQD--FVILASRRKPCDNGDP 160 (240)
T ss_pred EEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCCe--EEEEEEEEeccCCCcc
Confidence 44577 9999999999999999999999999999876422122 2443332111 111222 22211111211 121
Q ss_pred -eEEEEEecC-CCc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEec
Q 030759 89 -WLSYEVTDN-NLG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADP 132 (172)
Q Consensus 89 -~~~y~v~~~-~~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p 132 (172)
.+.-..+.- .+| .....+-+.+.|.+++ +|.++|....+|
T Consensus 161 yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~----~t~vtY~~~~dP 209 (240)
T cd08913 161 YVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ----LTKVSYYNQATP 209 (240)
T ss_pred EEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC----cEEEEEEEEeCC
Confidence 133333332 233 4466788999998887 999999888887
No 59
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.027 Score=41.63 Aligned_cols=109 Identities=12% Similarity=-0.071 Sum_probs=71.7
Q ss_pred EEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEee--ccCCCCCCceeeEEEEEEE--EecCCCeE
Q 030759 15 IESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCAS--SKSDGHEVTIRWVKEKLIL--MDPIQRWL 90 (172)
Q Consensus 15 ~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~--~~~~~~~g~~~~~~E~l~~--~D~~~~~~ 90 (172)
.+| +||.|.||+.-+.-+++..--|--. ..+-+|..-+.|+.-.+.. +..| .|. ..+-++++ +|+. .++
T Consensus 8 ~~i-~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~eitqgtri~m~l~pfglp--~~~--tW~Arhte~~~d~~-~~F 80 (153)
T COG4276 8 TTI-TAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGSEITQGTRIAMGLTPFGLP--AGL--TWVARHTESGFDNG-SRF 80 (153)
T ss_pred eEe-cCCHHHHhhhhcCccHHHhcCCCcE-EeccCCCcccceeeeeecceeecCC--CCc--eEEEEeeecccCCc-cee
Confidence 356 9999999999998888766665322 1111231111222111111 1233 232 46778888 8884 678
Q ss_pred EEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCC
Q 030759 91 SYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEG 135 (172)
Q Consensus 91 ~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g 135 (172)
+=.++.+++|.-+...+.++.+.++ +|.+.=...|++..|
T Consensus 81 tDv~i~gPfp~~~WrHtH~F~~egg-----~TvliD~Vsye~p~g 120 (153)
T COG4276 81 TDVCITGPFPALNWRHTHNFVDEGG-----GTVLIDSVSYELPAG 120 (153)
T ss_pred eeeeecCCccceeeEEEeeeecCCC-----cEEEEeeEEeeccCc
Confidence 8888888998778899999998765 799999999986544
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=97.15 E-value=0.07 Score=41.25 Aligned_cols=139 Identities=10% Similarity=0.057 Sum_probs=79.4
Q ss_pred EEEEEecCCCHHHHH-HHHhcCCCcccccccceeeEEecCCCCCCceEEEEee-ccC-CCCCCceeeEEEEEEEEecCC-
Q 030759 12 KESIESASITAEQVW-ACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCAS-SKS-DGHEVTIRWVKEKLILMDPIQ- 87 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW-~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~-~~~-~~~~g~~~~~~E~l~~~D~~~- 87 (172)
+...+| +++++++. +++.|....++|.+.+.++++++--+.+. .+..... ... |-.+.. ++--+-...++.+
T Consensus 48 k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~-~i~~~~~~~~~~p~~~RD--fv~~r~~~~~~~~~ 123 (206)
T smart00234 48 RAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGT-VIYHYVSKFVAGPVSPRD--FVFVRYWRELVDGS 123 (206)
T ss_pred EEEEEE-ecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCC-eEEEEEEecccCcCCCCe--EEEEEEEEEcCCCc
Confidence 456677 88999754 68889999999999999988865422221 2232221 111 212222 3333333333322
Q ss_pred CeEEEEEecC-CCc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh-----hHHHHHHHHHHHHHH
Q 030759 88 RWLSYEVTDN-NLG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-----DFASHIDYSLKFMTK 154 (172)
Q Consensus 88 ~~~~y~v~~~-~~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-----~~~~~~~~~l~~L~~ 154 (172)
..+..+-++. ..| ...+.+-+.+.|.+++ .|+++|....+|. |+.+. ......-..++.|.+
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~----~t~vt~~~~~D~~-G~iP~~lvn~~~~~~~~~~~~~~~~ 198 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG----PSKVTWVSHADLK-GWLPHWLVRSLIKSGLAEFAKTWVA 198 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC----CeEEEEEEEEecC-CCccceeehhhhhhhHHHHHHHHHH
Confidence 2333322322 222 2356778999999887 8999999999986 43322 223444455566655
Q ss_pred HHHHh
Q 030759 155 KMEHA 159 (172)
Q Consensus 155 ~le~~ 159 (172)
.+...
T Consensus 199 ~~~~~ 203 (206)
T smart00234 199 TLQKH 203 (206)
T ss_pred HHHHH
Confidence 55543
No 61
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=97.07 E-value=0.054 Score=40.87 Aligned_cols=135 Identities=19% Similarity=0.072 Sum_probs=69.7
Q ss_pred EEEEecCCCHHHHHHHHhcCCCc---cccccc-ceeeEEecCCCCCCceEEEEe-e--ccCCC-----CCCceeeEEEEE
Q 030759 13 ESIESASITAEQVWACLEDFCNA---HKWLPN-LDTCYLVEGVPGQPGLVRYCA-S--SKSDG-----HEVTIRWVKEKL 80 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~---~~W~P~-v~~~~~~~g~~g~~G~vR~~~-~--~~~~~-----~~g~~~~~~E~l 80 (172)
.+.++ ++|+++||+++.|-.-+ .+-... ...+...+.++++. .++... + ..+|+ -++. ..-++.
T Consensus 3 ~~~~~-~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~-~v~~~~~v~~~~lP~~~~k~v~~~--l~v~~~ 78 (159)
T PF10698_consen 3 HSVEY-PAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGV-RVTVRQTVPADKLPSAARKFVGGD--LRVTRT 78 (159)
T ss_pred EEEEc-CCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeE-EEEEEEecChhhCCHHHHHhcCCC--eEEEEE
Confidence 57889 99999999999873221 111221 11222112111111 111111 1 01121 1121 122344
Q ss_pred EEE---ecCCCeEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEe---cCCCCChh-hHHHHHHHHHHHHH
Q 030759 81 ILM---DPIQRWLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVAD---PFEGWKFE-DFASHIDYSLKFMT 153 (172)
Q Consensus 81 ~~~---D~~~~~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~---p~~g~~~~-~~~~~~~~~l~~L~ 153 (172)
..+ ++..++.+|++.-...|+ ...++++|.|.++ +|+++++.+++ |+-|...+ .+...+...|+...
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~~-----gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~ 152 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDGG-----GTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQ 152 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceE-EEEEEEEEecCCC-----CEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence 555 445566666655444553 4589999999443 79999998887 55453333 33455555555555
Q ss_pred HHHH
Q 030759 154 KKME 157 (172)
Q Consensus 154 ~~le 157 (172)
+...
T Consensus 153 ~~~~ 156 (159)
T PF10698_consen 153 EFTA 156 (159)
T ss_pred HHHH
Confidence 4443
No 62
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=96.85 E-value=0.073 Score=41.95 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=75.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeE-EEEEEEEecCCCeE
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWV-KEKLILMDPIQRWL 90 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~-~E~l~~~D~~~~~~ 90 (172)
++..++.+++++.+.+++-|.+..++|.+.+.+...... ++. -.++...-.+.|-.+.. ++ .-+...+|..+..+
T Consensus 52 k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~-~~~-~i~y~~~k~PwPvs~RD--~V~~r~~~~~~~~~~~~ 127 (207)
T cd08910 52 KVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKEC-DGE-TVIYWEVKYPFPLSNRD--YVYIRQRRDLDVEGRKI 127 (207)
T ss_pred EEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecC-CCC-EEEEEEEEcCCCCCCce--EEEEEEeccccCCCCeE
Confidence 345567238999999999999999999998766422122 221 11232221122322332 22 11223344433322
Q ss_pred EE---EEecCC-Cc-------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh-hHHHHHHHHHHHHHHHHHH
Q 030759 91 SY---EVTDNN-LG-------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-DFASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 91 ~y---~v~~~~-~p-------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-~~~~~~~~~l~~L~~~le~ 158 (172)
.. +.++.+ +| +..+.+.+.++|.+++ +|.+++.+..+|- |..+. .+..+...++-..-+.|.+
T Consensus 128 ~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~----~t~i~~~~~~DPg-G~IP~wlvN~~~~~~~~~~l~~l~k 202 (207)
T cd08910 128 WVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK----GSKVFMYYFDNPG-GMIPSWLINWAAKNGVPNFLKDMQK 202 (207)
T ss_pred EEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC----ceEEEEEEEeCCC-CcchHHHHHHHHHHhhHHHHHHHHH
Confidence 11 222221 22 5678889999998876 8999999999996 44443 2333333333333333333
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=96.77 E-value=0.18 Score=39.43 Aligned_cols=139 Identities=12% Similarity=-0.011 Sum_probs=72.9
Q ss_pred EEEEEecCCCHHHHHHHHhc--CCCcccccccceeeEEecCCCCCCceEEEEeeccCCC----CCCceeeEE-EEEEEEe
Q 030759 12 KESIESASITAEQVWACLED--FCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDG----HEVTIRWVK-EKLILMD 84 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~d--f~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~----~~g~~~~~~-E~l~~~D 84 (172)
++..+| ++++++|.+++.| .....+|.+.+.+|++++.-+...--++... +.|. .+.. ++. +....++
T Consensus 49 k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~--p~~~~~~vs~RD--fV~~~~~~~~~ 123 (206)
T cd08867 49 RAEGIV-DALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTIT--PSAAMGLISPRD--FVDLVYVKRYE 123 (206)
T ss_pred EEEEEE-cCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEc--cccccCccCCcc--eEEEEEEEEeC
Confidence 445677 9999999999998 6777999999999988765321111122221 1110 1111 221 2223334
Q ss_pred cCCCeEEEEEecCC-Cc-----ce--eEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhh-HHHHHHHHHHHHHHH
Q 030759 85 PIQRWLSYEVTDNN-LG-----IK--SYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFED-FASHIDYSLKFMTKK 155 (172)
Q Consensus 85 ~~~~~~~y~v~~~~-~p-----~~--~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~~~~~~~~l~~L~~~ 155 (172)
.....+...-++.+ .| ++ ...+-+-+.|.+++ .++|.++|.+.++|. |..+.. +...+..++....+.
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~--~~~t~~~~~~~~Dpk-G~iP~~lvn~~~~~~~~~~~~~ 200 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGS--PDKSFLVLYVQTDLR-GMIPQSLVESAMPSNLVNFYTD 200 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCC--CCceEEEEEEEeccC-CCCcHHHHHhhhhhhHHHHHHH
Confidence 32222333334222 22 11 23344567776422 027999999999997 544433 233444444333333
Q ss_pred HHH
Q 030759 156 MEH 158 (172)
Q Consensus 156 le~ 158 (172)
|.+
T Consensus 201 lr~ 203 (206)
T cd08867 201 LVK 203 (206)
T ss_pred HHH
Confidence 333
No 64
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.61 E-value=0.15 Score=38.37 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHh-cCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEecC
Q 030759 19 SITAEQVWACLE-DFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVTDN 97 (172)
Q Consensus 19 ~Ap~e~VW~~l~-df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~~~ 97 (172)
..+.++||.-|- -..+-..+.|+|.+|++++..+ ..-.|.++| ++. .++|++.-+.+ +++.|.-.
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~--~~~~R~v~f-----g~~---~v~E~v~~~~~--~~V~f~~~-- 82 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESD--TVLTREVTF-----GGA---TVRERVTLYPP--ERVDFAQH-- 82 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-S--SEEEEEEEE-----TTE---EEEEEEEEETT--TEEEESSS--
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCC--CeEEEEEEE-----CCc---EEEEEEEEeCC--cEEEEEcC--
Confidence 456789998774 3556677899999999987642 345999998 333 58998766644 68888211
Q ss_pred CCcceeEEEEEEEEeecCCCCCCccEEEEEEEEe
Q 030759 98 NLGIKSYVATIKVFPINFDNGMKGCRIEWSYVAD 131 (172)
Q Consensus 98 ~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~ 131 (172)
.+..-++.+....++ .=.+++.|+..
T Consensus 83 ----~Gs~lt~~I~e~~~g----~L~ltf~ye~~ 108 (149)
T PF08982_consen 83 ----DGSSLTNIISEPEPG----DLFLTFTYEWR 108 (149)
T ss_dssp ----BEEEEEEEEEEEETT----EEEEEEEEEEE
T ss_pred ----CCCEEEEEEecCCCC----cEEEEEEEEec
Confidence 122345555544444 45555555554
No 65
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=95.93 E-value=0.62 Score=36.79 Aligned_cols=141 Identities=8% Similarity=0.013 Sum_probs=79.5
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCcee---eEE-EEEEEEecCCC
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIR---WVK-EKLILMDPIQR 88 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~---~~~-E~l~~~D~~~~ 88 (172)
.+.+| +..+++||+.+.+-....+|.|.+.+|.+++--+...--.|.++. .+ ..+.++ ++. -+...+.+.-.
T Consensus 51 ~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~--~~-~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 51 AQGVV-EDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTA--GQ-LLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred EEEEe-cCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcc--cC-CcCccCccceEEEEEEEEeCCCeE
Confidence 35567 899999999998877778999999999988742211212355553 11 122211 121 12222333211
Q ss_pred eEEEEEecCCCc---ceeE--EEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh-hHHHHHHHHHHHHHHHHHHhh
Q 030759 89 WLSYEVTDNNLG---IKSY--VATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-DFASHIDYSLKFMTKKMEHAS 160 (172)
Q Consensus 89 ~~~y~v~~~~~p---~~~~--~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-~~~~~~~~~l~~L~~~le~~~ 160 (172)
+..-++.-.+.| ++++ -+-+-+.|..++ -++|.++|-+.+++. |+.++ .+..++-..+......|.+++
T Consensus 127 s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~--p~k~~~t~~lq~DLk-G~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 127 SCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDN--PSHSLLTGYIQTDLR-GMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEeeecCCCCCCCeEeecccccEEEEEECCCC--CCceEEEEEEEecCC-CCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 111122111222 2322 234667787654 237999999999987 66554 345666666666666666543
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=95.89 E-value=0.16 Score=40.27 Aligned_cols=102 Identities=11% Similarity=0.178 Sum_probs=66.5
Q ss_pred ecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCC-ceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEe
Q 030759 17 SASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQP-GLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVT 95 (172)
Q Consensus 17 I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~-G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~ 95 (172)
++..+++.+..++++.+.|+++.|.++++.+....++++ -+--.+.| |+-+. ...-+++-.++ .+++.+.
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF---k~l~E---~y~S~Vt~~~p---~l~kt~~ 145 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF---KPLDE---RYTSNVTCVKP---HLTKTVC 145 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC---cccch---hheeeeEEecc---cceEEee
Confidence 349999999999999999999999999998876554443 22223322 42111 23334444444 3555544
Q ss_pred c-CCCcceeEEEEEEEEeec--CCCCCCccEEEEEEEEec
Q 030759 96 D-NNLGIKSYVATIKVFPIN--FDNGMKGCRIEWSYVADP 132 (172)
Q Consensus 96 ~-~~~p~~~~~~t~~v~p~~--~~~~~~~t~v~W~~~~~p 132 (172)
. +.+ +......+++.|.. .+ .|.+....+|+-
T Consensus 146 ~d~rL-F~~L~t~Wsf~pg~~~p~----tc~ldf~v~FeF 180 (227)
T KOG3177|consen 146 ADGRL-FNHLITIWSFKPGPNIPR----TCTLDFSVSFEF 180 (227)
T ss_pred ccccH-HHhhhheeeeccCCCCCC----eEEEEEEEEEEe
Confidence 3 333 34445678899877 55 899999977763
No 67
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.86 E-value=0.51 Score=35.22 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCHHHHHHHH-hcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCCeEEEEEec
Q 030759 20 ITAEQVWACL-EDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQRWLSYEVTD 96 (172)
Q Consensus 20 Ap~e~VW~~l-~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~~~~y~v~~ 96 (172)
...+++|.-| .--..-..+.|++.+|++++..++ -..|.++| +.. .++|++.-+.+ .++.|.+..
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~--~l~Rel~f-----~~~---~v~e~vt~~~~--~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT--VLERELTF-----GPA---KIRETVTLEPP--SRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCC--EEEEEEEE-----CCc---eEEEEEEecCC--cEEEEEecC
Confidence 4678999777 345666678899999999876432 34799998 333 48888665544 689998775
No 68
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=95.83 E-value=0.76 Score=37.01 Aligned_cols=142 Identities=12% Similarity=0.117 Sum_probs=76.3
Q ss_pred eEEEEEecC-CCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEE-EEEEEecCC-
Q 030759 11 GKESIESAS-ITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKE-KLILMDPIQ- 87 (172)
Q Consensus 11 g~vs~~I~~-Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E-~l~~~D~~~- 87 (172)
-++..+| + ++++.+-+++-|.+...+|...+.++++++-.+...--++...-.+.|..+.. ++.- .+...++..
T Consensus 54 ~Ka~~~v-~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD--~V~~~~~~~~~d~~~ 130 (235)
T cd08872 54 LKATHAV-KGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRD--ALFVSHIRKIPALEE 130 (235)
T ss_pred EEEEEEE-CCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcE--EEEEEEEEecCcccc
Confidence 3556677 6 99999999999999999999999888876532211111232221233322332 2222 223333311
Q ss_pred -------CeEEEEEecCCCcce-eEE-EE-----------------EEEEeecCCCCCCccEEEEEEEEecCCCCChh-h
Q 030759 88 -------RWLSYEVTDNNLGIK-SYV-AT-----------------IKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-D 140 (172)
Q Consensus 88 -------~~~~y~v~~~~~p~~-~~~-~t-----------------~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-~ 140 (172)
-.+.+++.-...|.+ ++. +. +.++| +++ +|.|+|....+|- |+.+. .
T Consensus 131 ~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~----~~~ity~~~~dPg-G~iP~wv 204 (235)
T cd08872 131 PNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNI----LCKITYVANVNPG-GWAPASV 204 (235)
T ss_pred ccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCC----eEEEEEEEEeCCC-CCccHHH
Confidence 113344333334422 211 22 12333 344 8999999999997 55443 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 030759 141 FASHIDYSLKFMTKKMEHASL 161 (172)
Q Consensus 141 ~~~~~~~~l~~L~~~le~~~~ 161 (172)
++.+++..+=++-+++.++..
T Consensus 205 vn~~~k~~~P~~l~~~~~~~~ 225 (235)
T cd08872 205 LRAVYKREYPKFLKRFTSYVQ 225 (235)
T ss_pred HHHHHHhhchHHHHHHHHHHH
Confidence 445555554444444444443
No 69
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.66 E-value=0.82 Score=36.11 Aligned_cols=142 Identities=8% Similarity=-0.021 Sum_probs=81.3
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCce---eeEEEEEE-EEecCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTI---RWVKEKLI-LMDPIQ 87 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~---~~~~E~l~-~~D~~~ 87 (172)
+++.+| +++++++++++.+-+...+|.+.+..+++++--+...--.+..+.. .+ .+.+ .++.-|-. .++...
T Consensus 49 k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~-~~--~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 49 RVEGII-PESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQS-FA--MGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred EEEEEe-cCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEeccc-cc--CCcccCceEEEEEEEEEeCCCE
Confidence 346678 9999999999998777789999999988876321111123322210 01 1111 12222222 234432
Q ss_pred CeEEEEEecCC-Cc-----ce--eEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChh-hHHHHHHHHHHHHHHHHHH
Q 030759 88 RWLSYEVTDNN-LG-----IK--SYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFE-DFASHIDYSLKFMTKKMEH 158 (172)
Q Consensus 88 ~~~~y~v~~~~-~p-----~~--~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~-~~~~~~~~~l~~L~~~le~ 158 (172)
..+.+.-++.+ .| ++ .+.+-+-+.|.+++ -++|.++|-+..+|. |+.+. .+..++...+..+...|+.
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~--p~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~~f~~~~~~ 201 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPEN--PAYSKLVMFVQPELR-GNLSRSVIEKTMPTNLVNLILDAKD 201 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCC--CCceEEEEEEEeCCC-CCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 23334444443 22 22 23345778887653 026999999999988 65544 4456666666666666665
Q ss_pred hh
Q 030759 159 AS 160 (172)
Q Consensus 159 ~~ 160 (172)
++
T Consensus 202 ~~ 203 (204)
T cd08904 202 GI 203 (204)
T ss_pred hc
Confidence 43
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=94.86 E-value=1.3 Score=33.92 Aligned_cols=140 Identities=15% Similarity=0.054 Sum_probs=77.5
Q ss_pred CceeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecC-CCCCCceEEEEee-ccC--CCCCCceeeEEEEEEE
Q 030759 7 SKWKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEG-VPGQPGLVRYCAS-SKS--DGHEVTIRWVKEKLIL 82 (172)
Q Consensus 7 ~~w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g-~~g~~G~vR~~~~-~~~--~~~~g~~~~~~E~l~~ 82 (172)
..+.-+....| +++++++...+-+-.. .|.+.+.++++++- +++ ..+....+ ... |-.+.. ++.-+...
T Consensus 44 ~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~~RD--fv~~~~~~ 116 (206)
T PF01852_consen 44 PIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVSPRD--FVFLRSWR 116 (206)
T ss_dssp SCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSSEEE--EEEEEEEE
T ss_pred cceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCCCcE--EEEEEEEE
Confidence 45556777888 9999977776654333 89999999888754 222 23333332 112 111111 22222222
Q ss_pred EecCC-CeEEE-EEecCCCc--------ceeEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhH-HHHHHH----
Q 030759 83 MDPIQ-RWLSY-EVTDNNLG--------IKSYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDF-ASHIDY---- 147 (172)
Q Consensus 83 ~D~~~-~~~~y-~v~~~~~p--------~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-~~~~~~---- 147 (172)
.+.++ ..+.. ++.....| ...+.+.+.++|.+++ .|+|++....+|. |..+..+ +.++..
T Consensus 117 ~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~----~~~vt~~~~~D~~-G~iP~~~~n~~~~~~~~~ 191 (206)
T PF01852_consen 117 KDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG----RTRVTYVSQVDPK-GWIPSWLVNMVVKSQPPN 191 (206)
T ss_dssp ECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC----EEEEEEEEEEESS-SSSHHHHHHHHHHHHHHH
T ss_pred EeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC----CceEEEEEEECCC-CCChHHHHHHHHHHhHHH
Confidence 23322 23333 33222222 2355678899999987 8999999999997 5555432 333333
Q ss_pred HHHHHHHHHHH
Q 030759 148 SLKFMTKKMEH 158 (172)
Q Consensus 148 ~l~~L~~~le~ 158 (172)
.++.|.+.+++
T Consensus 192 ~~~~~~~~~~~ 202 (206)
T PF01852_consen 192 FLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.40 E-value=2 Score=33.98 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=80.3
Q ss_pred ccCceeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecC-C-CCCCceEEEEeeccCCCCCCceeeEEEEEEE
Q 030759 5 QLSKWKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEG-V-PGQPGLVRYCASSKSDGHEVTIRWVKEKLIL 82 (172)
Q Consensus 5 ~~~~w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g-~-~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~ 82 (172)
+...|++ +++| ++|++.|-..+-+ .-+.|-..+.+++.++- + +..++..+.-.+.+.| +.. ++.-|--.
T Consensus 50 ~lk~~r~--~~ei-~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~--~RD--~v~~R~w~ 120 (205)
T cd08909 50 PLRLWKV--SVEV-EAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHP--SRD--FVVLRSWR 120 (205)
T ss_pred ceEEEEE--EEEe-CCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCC--CCE--EEEEEEEE
Confidence 4567876 7778 9999999877754 57889998888777653 2 2333333322221122 232 45455544
Q ss_pred EecCCCe--EEEEEecCC-Ccce------eEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHH
Q 030759 83 MDPIQRW--LSYEVTDNN-LGIK------SYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMT 153 (172)
Q Consensus 83 ~D~~~~~--~~y~v~~~~-~p~~------~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~ 153 (172)
.|...-. +.+.-++.+ .|.. .+.+-+-++|.++| +|+|+|-...+|. |..+.-+.+.|...++.-.
T Consensus 121 ~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g----~trvt~i~~vDpk-G~~P~W~~n~~g~~~~~~~ 195 (205)
T cd08909 121 TDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSG----KSRLTHICRVDLK-GHSPEWYNKGFGHLCAAEA 195 (205)
T ss_pred EeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCC----CEEEEEEEEecCC-CCChHHHHHhHHHHHHHHH
Confidence 4542222 222223222 2222 23455788999887 9999999999997 7766655555555444433
Q ss_pred HH
Q 030759 154 KK 155 (172)
Q Consensus 154 ~~ 155 (172)
.+
T Consensus 196 ~~ 197 (205)
T cd08909 196 AR 197 (205)
T ss_pred HH
Confidence 33
No 72
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=92.98 E-value=2.4 Score=30.52 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=62.2
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCC----CceEEEEeeccCCCCCCceeeEEEEEEEEecCC
Q 030759 12 KESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQ----PGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQ 87 (172)
Q Consensus 12 ~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~----~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~ 87 (172)
+++.++ ++|++.+.+.|-+ .-...|..+ .|..-. .|..=.-.+ + +.. ..+=+|+++.+ +
T Consensus 2 kI~~~l-~v~a~~ff~~l~~-----s~~~DI~~~---tgk~~~~~~L~G~~Y~K~~---~-~~~---~~~v~It~~~~-~ 64 (120)
T PF11687_consen 2 KISKTL-NVSAEEFFDYLID-----SLLYDIKQA---TGKKLPVKQLKGFSYQKKF---K-NKR---EAKVKITEYEP-N 64 (120)
T ss_pred eEEEEe-cCCHHHHHHHHHH-----HHHHHHHHH---cCCCCChhhcCCcEEEEEc---C-CCC---EEEEEEEEEcC-C
Confidence 367788 9999999998864 111122222 121100 231111111 2 222 46677999988 4
Q ss_pred CeEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 88 RWLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 88 ~~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
+.|.+...... ..+..++++.|.++| .|.|+++-++.+.
T Consensus 65 ~~Y~~~~~s~~---~~~~i~Y~i~~~~~~----~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 65 KRYAATFSSSR---GTFTISYEIEPLDDG----SIEVTYEEEYESK 103 (120)
T ss_pred CEEEEEEEecC---CCEEEEEEEEECCCC----cEEEEEEEEEccC
Confidence 78888866432 347789999999987 8999999999976
No 73
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=87.66 E-value=21 Score=33.46 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred EEEecCCCHHHHHHHHhcCC-CcccccccceeeEEecCCCCCCceE-EEEe-----eccCCCCCCceeeEEEEEEEE-ec
Q 030759 14 SIESASITAEQVWACLEDFC-NAHKWLPNLDTCYLVEGVPGQPGLV-RYCA-----SSKSDGHEVTIRWVKEKLILM-DP 85 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~-~~~~W~P~v~~~~~~~g~~g~~G~v-R~~~-----~~~~~~~~g~~~~~~E~l~~~-D~ 85 (172)
..+| +|++++||+.|-+.+ .-.+|-..+..+++++--++...-+ +.++ ..+.| -| ++.-|...- ++
T Consensus 232 vGVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~isp-RD----FV~~Rywrr~eD 305 (719)
T PLN00188 232 VGVV-EATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWP-RD----LCYVRYWRRNDD 305 (719)
T ss_pred EEEe-cCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCc-ce----eEEEEEEEEcCC
Confidence 3467 999999999997666 4578999999988875422222111 2332 01112 11 333333333 34
Q ss_pred CCCeEEEEEecCC--Cc----ce--eEEEEEEEEeecCCCCCCccEEEEEEEEecCCCCC
Q 030759 86 IQRWLSYEVTDNN--LG----IK--SYVATIKVFPINFDNGMKGCRIEWSYVADPFEGWK 137 (172)
Q Consensus 86 ~~~~~~y~v~~~~--~p----~~--~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~ 137 (172)
....+.|.=+..+ .| ++ ...+-+.+.|.......++|.|+|-+..++. |+.
T Consensus 306 GsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlk-GW~ 364 (719)
T PLN00188 306 GSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLK-GWG 364 (719)
T ss_pred CcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccC-ccc
Confidence 3344445444432 22 22 2235677888543212258999999999986 543
No 74
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.25 E-value=22 Score=29.77 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=63.2
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCCCCCceEEEEeeccCCCCCCceeeEEEEEEEEecCCC-eEE
Q 030759 13 ESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVPGQPGLVRYCASSKSDGHEVTIRWVKEKLILMDPIQR-WLS 91 (172)
Q Consensus 13 vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~~D~~~~-~~~ 91 (172)
.+.++ +++++++.+++.|-..+..|.-... .+ +.++||. .-.+ +|. +.-+++++.++.+ .+.
T Consensus 177 l~~tf-n~~~~eLy~~fld~~rv~~wt~S~a--~l-~~~~~g~--f~lf--------~Gn---Vtg~~~~~e~~K~Iv~k 239 (301)
T KOG2936|consen 177 LSATF-NCRVDELYEIFLDPERVKAWTRSPA--EL-EADPGGK--FSLF--------DGN---VTGEFLELEKNKKIVMK 239 (301)
T ss_pred ehhhc-CCCHHHHHHHHhcHHHHHHhcCChh--hc-ccCCCCc--eEEe--------ccc---ceeeeeeecCCCeEEEE
Confidence 35578 9999999999999888888874221 22 3333332 3322 343 5566777777654 578
Q ss_pred EEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 92 YEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 92 y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
|++-+=+ ..+.+|+.++....+ +.|.+.-...--|.
T Consensus 240 Wrl~~Wp---~~~~atI~~~f~~~~---~~t~l~~~~kgVP~ 275 (301)
T KOG2936|consen 240 WRLKSWP---DGHDATITLTFYESQ---GETKLQVKQKGVPI 275 (301)
T ss_pred EecccCC---CCccceEEEEEecCC---CceEEEEEecCCCc
Confidence 8876533 336788888887654 26777666555554
No 75
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=45.20 E-value=1e+02 Score=21.33 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=38.5
Q ss_pred EEEEEEEEecCCCeEEEEEecCCCcceeEEEEEEEEeecCCCCCCccEEEEEEEEecC
Q 030759 76 VKEKLILMDPIQRWLSYEVTDNNLGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPF 133 (172)
Q Consensus 76 ~~E~l~~~D~~~~~~~y~v~~~~~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~ 133 (172)
++=+++.+.| .+.++|.---.-..+-....++++++..++ .|++.-...|.+.
T Consensus 11 ~~P~il~~~P-~reL~W~~~~~~~~l~~~~~~~~le~~~~~----~t~~~q~e~F~Gv 63 (93)
T COG4891 11 IRPVILGLEP-LRELTWLGNVRFPGLLDGERYFELEALWGG----RTRFAQGESFSGV 63 (93)
T ss_pred EeeEEEeccc-chheeeecccccceEEeeEEEEEEeecCCc----cceeeccceecce
Confidence 4556777777 478999733221235667789999999888 8999988888764
No 76
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=42.34 E-value=1.7e+02 Score=23.18 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=71.2
Q ss_pred ccCceeeEEEEEecCCCHHHHHHHHhcCCCcccccccceeeEEecC--CCCCCceEEEEeeccCCCCCCceeeEEEEEEE
Q 030759 5 QLSKWKGKESIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEG--VPGQPGLVRYCASSKSDGHEVTIRWVKEKLIL 82 (172)
Q Consensus 5 ~~~~w~g~vs~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g--~~g~~G~vR~~~~~~~~~~~g~~~~~~E~l~~ 82 (172)
+...|+.++ +|.+.|++-+-++|.| -+.|=+.+.++..++- ++..+|..-.-.+.++| . .. ++.-|.-.
T Consensus 50 ~l~lwk~s~--ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p-~-RD--fv~lRsW~ 120 (205)
T cd08907 50 PLRLWKVST--EVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHP-R-RD--FVVLRMWR 120 (205)
T ss_pred ceEEEEEEE--EecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCC-C-ce--EEEEEEEc
Confidence 345666554 5536666667788887 5578887766655432 24455532221121233 1 11 33333321
Q ss_pred EecCCC---eEEEEEecCCCc-cee-----EEEEEEEEeecCCCCCCccEEEEEEEEecCCCCChhhHHHHHHHHHHHHH
Q 030759 83 MDPIQR---WLSYEVTDNNLG-IKS-----YVATIKVFPINFDNGMKGCRIEWSYVADPFEGWKFEDFASHIDYSLKFMT 153 (172)
Q Consensus 83 ~D~~~~---~~~y~v~~~~~p-~~~-----~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~~l~~L~ 153 (172)
-|...- -+.++|.-...| ..+ +..-+=++|.+.| +|++++-...+|. |..++-..+.++..++.-.
T Consensus 121 ~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g----~s~ltyi~rvD~r-G~~P~Wynk~~g~~~a~~l 195 (205)
T cd08907 121 SDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMG----RSRLTHICRADLR-GRSPDWYNKVFGHLCAMEV 195 (205)
T ss_pred cCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCC----CeEEEEEEEeCCC-CCCcHHHHHhHHHHHHHHH
Confidence 122111 233343222223 222 2334567888887 9999999999987 6555555555554444433
Q ss_pred HH
Q 030759 154 KK 155 (172)
Q Consensus 154 ~~ 155 (172)
.+
T Consensus 196 ~~ 197 (205)
T cd08907 196 AR 197 (205)
T ss_pred HH
Confidence 33
No 77
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=36.34 E-value=1.1e+02 Score=19.78 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=26.3
Q ss_pred CcceeEEEEEEEEeecCCCCCCccEEEEEEEEecCC
Q 030759 99 LGIKSYVATIKVFPINFDNGMKGCRIEWSYVADPFE 134 (172)
Q Consensus 99 ~p~~~~~~t~~v~p~~~~~~~~~t~v~W~~~~~p~~ 134 (172)
-|+......++|.|..+. ....+.|.+.++|.+
T Consensus 14 ~pV~~~~~~lrl~P~~~~---~Q~v~~~~l~i~P~~ 46 (82)
T PF08379_consen 14 APVSLSPHRLRLTPRSDP---GQRVLSWSLTIEPEP 46 (82)
T ss_pred ChHHhceeeeEEECCCCC---CccEEEEEEEEcCCC
Confidence 356667789999999876 488999999999853
No 78
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=26.91 E-value=1e+02 Score=17.43 Aligned_cols=21 Identities=5% Similarity=0.216 Sum_probs=16.2
Q ss_pred eeeEEEEEecCCCHHHHHHHHh
Q 030759 9 WKGKESIESASITAEQVWACLE 30 (172)
Q Consensus 9 w~g~vs~~I~~Ap~e~VW~~l~ 30 (172)
.+|+|.+-= +.|++++.+++.
T Consensus 12 Y~G~V~Vfd-~v~~~Ka~~im~ 32 (36)
T PF06200_consen 12 YGGQVCVFD-DVPPDKAQEIML 32 (36)
T ss_pred ECCEEEEeC-CCCHHHHHHHHH
Confidence 456776655 699999999885
No 79
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=25.85 E-value=3.5e+02 Score=21.71 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=74.6
Q ss_pred EEEecCCCHHHHHHHHhcCCCcccccccceeeEEecCCC-CCCceEEEEeeccCCCCCCceeeEEE-EEEEEecCCCe--
Q 030759 14 SIESASITAEQVWACLEDFCNAHKWLPNLDTCYLVEGVP-GQPGLVRYCASSKSDGHEVTIRWVKE-KLILMDPIQRW-- 89 (172)
Q Consensus 14 s~~I~~Ap~e~VW~~l~df~~~~~W~P~v~~~~~~~g~~-g~~G~vR~~~~~~~~~~~g~~~~~~E-~l~~~D~~~~~-- 89 (172)
..++-+++|+.|-+++-|-+=-++|=-.+...+.++-++ .+.--+|...=++.|..+.. ++-- |+..-|+ +..
T Consensus 58 ~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~Rd--YV~~Rr~~~~~~-k~~~i 134 (219)
T KOG2761|consen 58 RTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRD--YVYVRRWWESDE-KDYYI 134 (219)
T ss_pred EEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCcc--EEEEEEEEecCC-ceEEE
Confidence 334459999999999988666688988887777665532 12223454442222322222 2222 3333332 222
Q ss_pred EEEEEecCCCc-------ceeEEEEEEEE----eecCCCCCCccEEEEEEEEecCCCCChhhHH----HHHHHHHHHHHH
Q 030759 90 LSYEVTDNNLG-------IKSYVATIKVF----PINFDNGMKGCRIEWSYVADPFEGWKFEDFA----SHIDYSLKFMTK 154 (172)
Q Consensus 90 ~~y~v~~~~~p-------~~~~~~t~~v~----p~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~----~~~~~~l~~L~~ 154 (172)
+++.+.-..+| ++.|..-+.+. ..++ ++|.+++.+--.|..+.+..... ..+-.+++.|..
T Consensus 135 ~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~----~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~ 210 (219)
T KOG2761|consen 135 VSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDE----QGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEK 210 (219)
T ss_pred EEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCC----CccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHH
Confidence 23333223333 34555555555 2233 38999999888887555544433 334444555555
Q ss_pred HHHHhh
Q 030759 155 KMEHAS 160 (172)
Q Consensus 155 ~le~~~ 160 (172)
++.++.
T Consensus 211 a~~~Y~ 216 (219)
T KOG2761|consen 211 ALLAYQ 216 (219)
T ss_pred HHHhhh
Confidence 544443
No 80
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=24.65 E-value=2.9e+02 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCceeeEEEEEEEEecCCCeEEEEEecCC
Q 030759 69 HEVTIRWVKEKLILMDPIQRWLSYEVTDNN 98 (172)
Q Consensus 69 ~~g~~~~~~E~l~~~D~~~~~~~y~v~~~~ 98 (172)
.+|. ++|-+..|+|.+....|.+-++.
T Consensus 46 ~~Gk---vKE~~~~ynp~~~~~~Y~is~~~ 72 (178)
T PF02087_consen 46 SNGK---VKEALYHYNPKNKTYFYDISESK 72 (178)
T ss_dssp ETTE---EEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCCc---eEEEEEEecCCCceEEEEeeeee
Confidence 4674 99999999999989999877654
No 81
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=23.72 E-value=3.6e+02 Score=21.12 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=61.3
Q ss_pred ccCceeeEEEEEecCCCH--HHHH----HHHhc--CCCcccccccce--eeEEecCCCCCCc---eEEEEee-ccCCCCC
Q 030759 5 QLSKWKGKESIESASITA--EQVW----ACLED--FCNAHKWLPNLD--TCYLVEGVPGQPG---LVRYCAS-SKSDGHE 70 (172)
Q Consensus 5 ~~~~w~g~vs~~I~~Ap~--e~VW----~~l~d--f~~~~~W~P~v~--~~~~~~g~~g~~G---~vR~~~~-~~~~~~~ 70 (172)
....|-++.|+.= +.+. .+.| ..+++ ..+-.+|.|.+. .++.++..+++-| .+-...+ +..|-.+
T Consensus 28 ~~~~W~~R~S~H~-~~~~~~~~~~~~~~~~l~~~h~~~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~ 106 (208)
T cd08864 28 KGDFWFARVSVHE-DLGFTGKKSYQEFREGLRDTHTEYEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSP 106 (208)
T ss_pred CCceeEEEEeecC-CCCchhhhHHHHHHhhhhHhHHhhhhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCC
Confidence 3578999998853 3332 2222 33443 334578999998 7777654322222 2222222 1223233
Q ss_pred CceeeEEEEEE-EEecC--CCeEEEEE--ecCCCc------ceeEE--E-EEEEEeec-CCCCCCccEEEEEE--EEecC
Q 030759 71 VTIRWVKEKLI-LMDPI--QRWLSYEV--TDNNLG------IKSYV--A-TIKVFPIN-FDNGMKGCRIEWSY--VADPF 133 (172)
Q Consensus 71 g~~~~~~E~l~-~~D~~--~~~~~y~v--~~~~~p------~~~~~--~-t~~v~p~~-~~~~~~~t~v~W~~--~~~p~ 133 (172)
.. +.+.+. ..+.. ...+..++ ....+| ++... + .++..|.+ ++ .+.|+|++ ..+|-
T Consensus 107 Rd---fv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~y~SgE~~~~~p~~~~~----~~~vew~maT~sDpG 179 (208)
T cd08864 107 RV---FNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGRYASVEKISYLPDADGK----SNKVEWIMATRSDAG 179 (208)
T ss_pred cE---EEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEEEEEEEEEEEcCccCCC----cCCEEEEEEEeeCCC
Confidence 32 555555 44433 23344443 322334 33322 3 34555655 33 78999999 66664
Done!