BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030760
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
           Tbn1 From Solanum Lycopersicum (tomato)
 pdb|4DJ4|B Chain B, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
           Tbn1 From Solanum Lycopersicum (tomato)
          Length = 277

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 58  GYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI-GAS 101
           GY+   + + + +D+FN+ + I++    Q G R+A L+  + GAS
Sbjct: 224 GYKGVEAGETLSDDYFNSRLPIVMKRVAQGGIRLAMLLNNVFGAS 268


>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional
           Nuclease Tbn1 From Solanum Lycopersicum (tomato)
          Length = 277

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 58  GYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI-GAS 101
           GY+   + + + +D+FN+ + I++    Q G R+A L+  + GAS
Sbjct: 224 GYKGVEAGETLSDDYFNSRLPIVMKRVAQGGIRLAMLLNNVFGAS 268


>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
          Length = 1019

 Score = 26.6 bits (57), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 70  NDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS 119
           N+F  TN EI+  E D       AL+++   S L     D+ FL K  ++
Sbjct: 528 NEFIPTNFEILALEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLN 575


>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
           Two Bound Peptides
          Length = 1019

 Score = 26.6 bits (57), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 70  NDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS 119
           N+F  TN EI+  E D       AL+++   S L     D+ FL K  ++
Sbjct: 528 NEFIPTNFEILALEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLN 575


>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
          Length = 978

 Score = 26.6 bits (57), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 70  NDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS 119
           N+F  TN EI+  E D       AL+++   S L     D+ FL K  ++
Sbjct: 487 NEFIPTNFEILALEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPKACLN 534


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,763
Number of Sequences: 62578
Number of extensions: 105360
Number of successful extensions: 290
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 11
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)