BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030760
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 4 KKIVVIVEDVD-AARAALLWALQNLLRFGDVVTLLHVFPSLNSR--NRKKLRLLRL---K 57
+KI V V + D ++++L+WA+QN G ++HV + + +KLRL R K
Sbjct: 34 EKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPIPGEMFHEQKLRLYRKEKDK 91
Query: 58 GYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVG 106
++ + + IC EII E D I L+ + G + LV+G
Sbjct: 92 AHKNSEKYLQICRQ-MQVTAEIIYIETDSVEKGILQLISQRGVTKLVMG 139
>sp|Q6FFR5|DADA_ACIAD D-amino acid dehydrogenase small subunit OS=Acinetobacter sp.
(strain ADP1) GN=dadA PE=3 SV=1
Length = 419
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE +V EGD+ +G R+ V + L G + R FL LA+
Sbjct: 207 LAQKAKELGVNFQFNQNVEGLVVEGDEIKGVRVNGQVLKADRYVLAFGSYSRDFLKPLAL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ + I QP +PQ
Sbjct: 267 NLPVYPVKGYSLTIPIVQPEFAPQ 290
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF-PSLNSRNRKKLRLLRLKGYQLALSF 65
V + DV +R+ LLWAL+NL V +LHV+ P S +KL L Y+ +
Sbjct: 14 VAVKSDVRESRSTLLWALRNL--GAKKVCILHVYQPKTASPAARKLEELEAIMYETLHDY 71
Query: 66 KDICND--FFNTNVEIIVTEGDQEGARIAALVREIGASALVVG 106
D C ++ I E + I L+ E LV+G
Sbjct: 72 FDFCQQEGVNEDDIYISCIEMNDVKQGILELIHESKIKKLVMG 114
>sp|B0V6N4|DADA_ACIBY D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AYE) GN=dadA PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B7I1Q9|DADA_ACIB5 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB0057) GN=dadA PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B7H2E9|DADA_ACIB3 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB307-0294) GN=dadA PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B0VNF5|DADA_ACIBS D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain SDF) GN=dadA PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVAPAFAPQ 290
>sp|A3M0Z0|DADA_ACIBT D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=dadA PE=3 SV=2
Length = 421
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ + L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKILTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana
GN=PUB34 PE=3 SV=1
Length = 801
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 AARAALLWALQNLLRFGDVVTLLHVFPSLNS 45
+R A+ WA+ NLL D ++HV P++ S
Sbjct: 40 GSRRAVRWAVDNLLPKADKFVMIHVIPTITS 70
>sp|Q1LTT4|TPIS_BAUCH Triosephosphate isomerase OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=tpiA PE=3 SV=1
Length = 256
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 76 NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNC 129
NV++ V+ G G A ++++IGA +++G +R HK S+ DI++ F C
Sbjct: 66 NVDLHVS-GAFTGEISAKMLKDIGAKYIIIGHIERRLYHK--ESNEDIANKFAC 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,707,057
Number of Sequences: 539616
Number of extensions: 1992888
Number of successful extensions: 5813
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5810
Number of HSP's gapped (non-prelim): 14
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)