Query 030760
Match_columns 172
No_of_seqs 102 out of 1716
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 8.2E-27 2.8E-31 161.5 14.5 133 1-135 3-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 1.7E-25 5.7E-30 157.6 16.2 134 2-137 4-160 (162)
3 3tnj_A Universal stress protei 99.9 2.1E-26 7E-31 160.3 10.3 135 1-138 4-149 (150)
4 2dum_A Hypothetical protein PH 99.9 2.6E-25 8.8E-30 157.9 15.7 138 2-141 4-161 (170)
5 3fg9_A Protein of universal st 99.9 2.7E-25 9.1E-30 155.8 14.6 132 1-135 13-156 (156)
6 3dlo_A Universal stress protei 99.9 1.6E-25 5.5E-30 157.3 13.4 129 1-135 22-155 (155)
7 3hgm_A Universal stress protei 99.9 1.2E-25 3.9E-30 155.8 10.7 131 2-134 1-147 (147)
8 2z08_A Universal stress protei 99.9 1.9E-25 6.6E-30 153.3 11.8 132 2-135 1-137 (137)
9 3idf_A USP-like protein; unive 99.9 8.7E-25 3E-29 150.0 14.5 128 3-135 1-138 (138)
10 1tq8_A Hypothetical protein RV 99.9 5.8E-25 2E-29 155.6 13.4 135 1-138 15-160 (163)
11 3fdx_A Putative filament prote 99.9 1.3E-24 4.5E-29 149.8 11.1 131 3-135 1-143 (143)
12 2gm3_A Unknown protein; AT3G01 99.9 7.3E-24 2.5E-28 151.1 14.1 136 2-139 4-166 (175)
13 1jmv_A USPA, universal stress 99.9 2.1E-23 7.1E-28 143.6 12.0 131 2-137 1-139 (141)
14 3olq_A Universal stress protei 99.9 8.5E-23 2.9E-27 158.0 14.3 152 1-154 5-167 (319)
15 3loq_A Universal stress protei 99.9 1.1E-22 3.8E-27 156.0 11.6 145 1-149 20-176 (294)
16 3mt0_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 152.9 13.6 136 2-139 133-279 (290)
17 3olq_A Universal stress protei 99.9 6.4E-22 2.2E-26 153.1 14.8 141 2-143 155-312 (319)
18 3cis_A Uncharacterized protein 99.9 7.2E-22 2.5E-26 152.5 14.4 136 1-139 17-164 (309)
19 3mt0_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 153.1 10.7 138 1-154 5-145 (290)
20 1q77_A Hypothetical protein AQ 99.9 1.1E-21 3.7E-26 134.5 12.1 125 1-135 2-138 (138)
21 3ab8_A Putative uncharacterize 99.9 1.3E-21 4.5E-26 148.0 11.8 142 4-151 1-162 (268)
22 3loq_A Universal stress protei 99.9 9.8E-21 3.4E-25 145.1 14.6 122 2-138 169-292 (294)
23 3cis_A Uncharacterized protein 99.9 9E-21 3.1E-25 146.4 13.7 133 2-137 170-307 (309)
24 3ab8_A Putative uncharacterize 99.8 3.5E-18 1.2E-22 129.1 9.6 114 2-135 153-268 (268)
25 1wy5_A TILS, hypothetical UPF0 95.3 0.31 1.1E-05 37.2 11.3 101 3-115 24-141 (317)
26 3a2k_A TRNA(Ile)-lysidine synt 95.1 0.12 4.1E-06 41.8 8.8 103 3-116 18-136 (464)
27 3qjg_A Epidermin biosynthesis 93.1 0.3 1E-05 34.2 6.5 108 3-135 5-117 (175)
28 1zun_A Sulfate adenylyltransfe 93.0 0.56 1.9E-05 36.0 8.4 94 3-110 46-157 (325)
29 1g63_A Epidermin modifying enz 92.5 0.28 9.5E-06 34.5 5.7 109 2-135 1-114 (181)
30 2xry_A Deoxyribodipyrimidine p 92.1 1.2 4.1E-05 36.0 9.7 116 11-136 46-161 (482)
31 1mvl_A PPC decarboxylase athal 92.0 0.12 4E-06 37.3 3.2 109 2-136 18-140 (209)
32 1ni5_A Putative cell cycle pro 91.6 0.7 2.4E-05 36.9 7.7 100 3-115 13-124 (433)
33 2iel_A Hypothetical protein TT 91.4 2.2 7.4E-05 28.5 12.9 129 3-135 1-134 (138)
34 3umv_A Deoxyribodipyrimidine p 89.1 0.48 1.7E-05 38.7 4.8 89 11-105 47-135 (506)
35 3g40_A Na-K-CL cotransporter; 88.4 1.6 5.5E-05 33.0 6.9 100 18-139 180-280 (294)
36 3ih5_A Electron transfer flavo 88.3 1.7 5.7E-05 31.3 6.8 88 2-109 2-101 (217)
37 4grd_A N5-CAIR mutase, phospho 88.2 4.9 0.00017 27.9 8.7 67 66-139 32-101 (173)
38 3bl5_A Queuosine biosynthesis 87.8 5.5 0.00019 28.0 11.4 39 1-43 1-39 (219)
39 1sur_A PAPS reductase; assimil 87.6 4.8 0.00017 28.4 8.9 36 4-43 45-80 (215)
40 1qzu_A Hypothetical protein MD 87.5 0.53 1.8E-05 33.8 3.7 109 2-135 18-139 (206)
41 1o97_C Electron transferring f 87.1 7.1 0.00024 28.9 9.8 83 9-110 32-123 (264)
42 1p3y_1 MRSD protein; flavoprot 87.0 0.39 1.3E-05 34.2 2.7 111 3-136 8-123 (194)
43 2oq2_A Phosphoadenosine phosph 86.9 6.1 0.00021 29.1 9.3 41 3-44 41-81 (261)
44 4b4k_A N5-carboxyaminoimidazol 86.4 6.5 0.00022 27.4 9.9 67 66-139 42-111 (181)
45 2nz2_A Argininosuccinate synth 86.3 4.4 0.00015 32.1 8.7 38 2-43 4-41 (413)
46 2wq7_A RE11660P; lyase-DNA com 86.3 3 0.0001 34.3 7.9 121 11-136 38-161 (543)
47 2ywx_A Phosphoribosylaminoimid 86.0 6.3 0.00022 26.9 8.9 63 66-136 19-82 (157)
48 3trh_A Phosphoribosylaminoimid 84.9 7.6 0.00026 26.8 8.5 66 66-138 26-94 (169)
49 3k32_A Uncharacterized protein 84.8 8.2 0.00028 27.1 9.2 39 1-43 4-42 (203)
50 3g40_A Na-K-CL cotransporter; 83.6 12 0.00042 28.2 12.6 123 5-139 22-149 (294)
51 3kuu_A Phosphoribosylaminoimid 83.5 9.1 0.00031 26.5 8.8 67 66-139 32-101 (174)
52 2ywb_A GMP synthase [glutamine 81.9 12 0.0004 30.4 9.6 35 4-42 210-244 (503)
53 3lp6_A Phosphoribosylaminoimid 81.6 11 0.00037 26.2 8.6 67 66-139 27-96 (174)
54 2j4d_A Cryptochrome 3, cryptoc 80.8 6.7 0.00023 32.1 7.8 120 11-136 49-174 (525)
55 1np7_A DNA photolyase; protein 80.7 5.7 0.00019 32.1 7.4 126 5-136 7-137 (489)
56 1xmp_A PURE, phosphoribosylami 80.7 12 0.0004 25.9 9.0 66 66-139 31-100 (170)
57 3fy4_A 6-4 photolyase; DNA rep 80.6 2.2 7.6E-05 35.1 4.9 93 11-108 14-112 (537)
58 3rg8_A Phosphoribosylaminoimid 80.4 11 0.00039 25.6 8.0 66 66-138 22-91 (159)
59 2wsi_A FAD synthetase; transfe 80.3 11 0.00037 28.5 8.4 94 4-111 54-169 (306)
60 2c5s_A THII, probable thiamine 80.2 20 0.00068 28.3 12.0 36 3-42 187-222 (413)
61 3ors_A N5-carboxyaminoimidazol 80.1 12 0.00041 25.7 8.7 67 66-139 23-92 (163)
62 1u11_A PURE (N5-carboxyaminoim 80.1 13 0.00044 26.0 8.6 66 66-139 41-110 (182)
63 1efv_B Electron transfer flavo 79.7 16 0.00054 26.9 9.3 80 11-110 37-127 (255)
64 1o4v_A Phosphoribosylaminoimid 79.5 13 0.00046 25.9 8.2 66 66-139 33-102 (183)
65 2hma_A Probable tRNA (5-methyl 78.8 21 0.00072 27.8 10.4 36 3-42 9-44 (376)
66 1owl_A Photolyase, deoxyribodi 78.1 18 0.00061 29.1 9.5 112 11-135 12-128 (484)
67 3oow_A Phosphoribosylaminoimid 77.9 14 0.00049 25.4 9.5 67 66-139 25-94 (166)
68 1kor_A Argininosuccinate synth 77.9 15 0.00053 28.9 8.8 37 4-43 1-37 (400)
69 2j07_A Deoxyribodipyrimidine p 77.5 3.5 0.00012 32.7 5.1 111 11-136 11-121 (420)
70 2pg3_A Queuosine biosynthesis 76.9 17 0.00059 25.8 11.8 36 3-42 2-37 (232)
71 1k92_A Argininosuccinate synth 76.9 27 0.00093 28.0 11.8 36 3-42 10-45 (455)
72 2e0i_A 432AA long hypothetical 76.1 11 0.00036 30.1 7.6 110 17-136 16-126 (440)
73 2dpl_A GMP synthetase, GMP syn 74.5 25 0.00085 26.5 9.0 37 4-43 21-57 (308)
74 1efp_B ETF, protein (electron 74.2 23 0.00079 25.9 10.3 81 10-110 33-124 (252)
75 1dnp_A DNA photolyase; DNA rep 72.6 12 0.00042 30.1 7.1 85 18-109 17-105 (471)
76 3tqi_A GMP synthase [glutamine 72.1 5.4 0.00018 32.6 5.0 37 4-43 231-267 (527)
77 3tvs_A Cryptochrome-1; circadi 70.8 6.5 0.00022 32.3 5.2 86 17-107 19-107 (538)
78 1vbk_A Hypothetical protein PH 70.4 18 0.00061 27.3 7.3 85 4-109 180-265 (307)
79 2ejb_A Probable aromatic acid 67.6 8.6 0.0003 27.0 4.7 117 4-136 2-126 (189)
80 1iv0_A Hypothetical protein; r 66.5 17 0.00059 22.4 5.5 47 88-136 40-93 (98)
81 2o8v_A Phosphoadenosine phosph 61.7 43 0.0015 24.2 8.2 36 4-43 46-81 (252)
82 3zqu_A Probable aromatic acid 60.9 13 0.00044 26.6 4.6 128 2-136 3-139 (209)
83 3ouz_A Biotin carboxylase; str 59.0 54 0.0019 25.6 8.4 36 1-41 4-39 (446)
84 1nu0_A Hypothetical protein YQ 57.5 23 0.00079 23.4 5.1 50 88-137 42-97 (138)
85 2l69_A Rossmann 2X3 fold prote 56.7 32 0.0011 21.2 5.2 74 18-110 13-86 (134)
86 1vl2_A Argininosuccinate synth 56.4 55 0.0019 26.0 7.9 36 3-42 14-49 (421)
87 2wte_A CSA3; antiviral protein 55.8 56 0.0019 23.7 11.7 96 2-111 7-105 (244)
88 1w0d_A 3-isopropylmalate dehyd 55.4 25 0.00087 27.0 5.6 79 14-107 154-232 (337)
89 2yxb_A Coenzyme B12-dependent 55.3 44 0.0015 22.4 6.7 46 88-134 58-106 (161)
90 2der_A TRNA-specific 2-thiouri 54.7 73 0.0025 24.7 10.5 97 3-109 17-142 (380)
91 4f2d_A L-arabinose isomerase; 53.6 88 0.003 25.4 9.6 45 89-137 61-106 (500)
92 1y80_A Predicted cobalamin bin 52.9 55 0.0019 22.8 7.1 49 84-134 125-177 (210)
93 2h31_A Multifunctional protein 52.5 69 0.0024 25.5 7.8 62 68-137 287-353 (425)
94 1sbz_A Probable aromatic acid 51.6 23 0.00079 25.0 4.6 113 4-136 1-122 (197)
95 3oc6_A 6-phosphogluconolactona 50.8 53 0.0018 23.8 6.6 37 99-136 142-178 (248)
96 1vlc_A 3-isopropylmalate dehyd 49.9 36 0.0012 26.5 5.7 78 14-107 174-251 (366)
97 1vhx_A Putative holliday junct 49.1 14 0.00047 24.8 3.0 50 88-137 44-99 (150)
98 1x0l_A Homoisocitrate dehydrog 48.6 89 0.003 23.9 7.8 78 14-106 144-222 (333)
99 1cnz_A IPMDH, IMDH, protein (3 47.6 41 0.0014 26.2 5.7 78 14-107 170-247 (363)
100 3tx2_A Probable 6-phosphogluco 47.3 78 0.0027 22.9 8.2 37 99-136 144-180 (251)
101 2y3z_A 3-isopropylmalate dehyd 47.1 42 0.0014 26.1 5.7 78 14-107 163-240 (359)
102 3blx_B Isocitrate dehydrogenas 46.9 37 0.0013 26.3 5.4 79 14-107 163-244 (354)
103 3gxq_A Putative regulator of t 46.5 26 0.00088 18.2 3.0 28 75-102 10-37 (54)
104 1a05_A IPMDH, IMDH, 3-isopropy 45.5 50 0.0017 25.6 6.0 78 14-107 165-242 (358)
105 3nbm_A PTS system, lactose-spe 45.4 54 0.0019 20.5 5.5 60 66-136 27-86 (108)
106 3u7q_B Nitrogenase molybdenum- 45.3 1.2E+02 0.004 24.7 8.4 51 80-135 420-470 (523)
107 3u1h_A 3-isopropylmalate dehyd 44.9 47 0.0016 26.1 5.7 77 14-106 186-262 (390)
108 3udu_A 3-isopropylmalate dehyd 44.6 47 0.0016 25.8 5.6 78 14-107 167-244 (361)
109 1qv9_A F420-dependent methylen 44.3 55 0.0019 24.1 5.5 46 90-137 55-100 (283)
110 3r8w_A 3-isopropylmalate dehyd 44.2 54 0.0018 25.9 6.0 77 14-106 207-283 (405)
111 3rot_A ABC sugar transporter, 43.4 89 0.003 22.4 7.9 67 66-137 26-95 (297)
112 2f6u_A GGGPS, (S)-3-O-geranylg 43.3 50 0.0017 23.9 5.4 48 89-137 23-70 (234)
113 3jr2_A Hexulose-6-phosphate sy 42.9 52 0.0018 23.1 5.4 24 1-25 4-27 (218)
114 3vmk_A 3-isopropylmalate dehyd 42.8 77 0.0026 24.7 6.6 78 14-107 179-256 (375)
115 3flk_A Tartrate dehydrogenase/ 42.5 34 0.0012 26.6 4.6 78 14-106 166-244 (364)
116 3ico_A 6PGL, 6-phosphogluconol 42.4 99 0.0034 22.7 8.7 37 99-136 160-196 (268)
117 3m9w_A D-xylose-binding peripl 42.0 96 0.0033 22.4 9.5 67 66-137 25-92 (313)
118 1u3d_A Cryptochrome 1 apoprote 41.5 1.4E+02 0.0047 24.1 11.3 112 11-136 21-138 (509)
119 3lqk_A Dipicolinate synthase s 40.7 24 0.00082 24.9 3.2 116 2-135 6-130 (201)
120 2a5l_A Trp repressor binding p 40.6 40 0.0014 22.9 4.4 42 1-42 3-45 (200)
121 3l6u_A ABC-type sugar transpor 40.2 98 0.0033 22.0 9.8 69 64-137 29-98 (293)
122 3o1i_D Periplasmic protein TOR 40.1 1E+02 0.0034 22.1 8.7 65 65-135 27-94 (304)
123 2rbg_A Putative uncharacterize 39.9 73 0.0025 20.4 9.2 96 1-110 1-97 (126)
124 3da8_A Probable 5'-phosphoribo 39.7 99 0.0034 21.9 8.8 86 2-110 11-100 (215)
125 3ezx_A MMCP 1, monomethylamine 37.2 77 0.0026 22.3 5.6 49 84-134 129-183 (215)
126 3qvl_A Putative hydantoin race 37.0 32 0.0011 24.9 3.5 27 89-115 160-190 (245)
127 1qgu_B Protein (nitrogenase mo 36.7 1.7E+02 0.0058 23.7 8.3 30 79-109 415-444 (519)
128 3p52_A NH(3)-dependent NAD(+) 36.2 1.1E+02 0.0038 22.1 6.4 38 2-42 25-62 (249)
129 3blx_A Isocitrate dehydrogenas 35.8 56 0.0019 25.2 4.8 80 13-107 156-237 (349)
130 3rjz_A N-type ATP pyrophosphat 35.7 1.2E+02 0.0042 21.8 7.1 93 4-109 5-100 (237)
131 1q6o_A Humps, 3-keto-L-gulonat 35.7 1.1E+02 0.0038 21.3 6.6 90 1-109 1-90 (216)
132 3ty4_A Probable homoisocitrate 35.3 1.3E+02 0.0046 23.3 6.9 78 14-106 162-255 (366)
133 8abp_A L-arabinose-binding pro 35.0 1.2E+02 0.0042 21.6 8.9 42 90-135 48-89 (306)
134 1ccw_A Protein (glutamate muta 34.7 92 0.0031 20.1 8.3 58 74-134 31-91 (137)
135 3ayv_A Putative uncharacterize 34.5 1.2E+02 0.0041 21.3 8.3 78 16-99 74-154 (254)
136 4ds3_A Phosphoribosylglycinami 34.3 1.2E+02 0.0042 21.4 10.1 109 1-137 5-117 (209)
137 1nmo_A Hypothetical protein YB 34.1 39 0.0013 24.5 3.6 31 2-39 34-64 (247)
138 3kcq_A Phosphoribosylglycinami 33.9 1.3E+02 0.0043 21.4 10.0 86 3-110 8-93 (215)
139 3o3m_B Beta subunit 2-hydroxya 33.4 97 0.0033 24.0 6.0 52 88-139 302-354 (385)
140 3mcu_A Dipicolinate synthase, 33.1 38 0.0013 24.1 3.3 116 2-135 4-128 (207)
141 3ecs_A Translation initiation 32.8 1.4E+02 0.0049 22.6 6.6 39 99-137 189-232 (315)
142 3l49_A ABC sugar (ribose) tran 32.7 1.3E+02 0.0045 21.3 8.8 66 66-136 28-94 (291)
143 3vk5_A MOEO5; TIM barrel, tran 32.7 86 0.0029 23.5 5.2 45 91-135 58-104 (286)
144 3qi7_A Putative transcriptiona 32.4 1.5E+02 0.0051 23.1 6.8 120 5-137 14-165 (371)
145 1gpm_A GMP synthetase, XMP ami 31.6 2.1E+02 0.0071 23.2 9.0 37 4-43 228-264 (525)
146 3exr_A RMPD (hexulose-6-phosph 31.4 1.4E+02 0.0047 21.1 6.3 86 4-108 6-91 (221)
147 3f6p_A Transcriptional regulat 30.6 90 0.0031 18.7 5.5 47 89-137 36-82 (120)
148 3o1l_A Formyltetrahydrofolate 30.2 1.7E+02 0.006 21.9 10.9 84 3-109 105-191 (302)
149 1viz_A PCRB protein homolog; s 30.1 1E+02 0.0035 22.3 5.2 48 89-137 23-70 (240)
150 3uug_A Multiple sugar-binding 30.0 1.6E+02 0.0054 21.3 9.6 68 65-137 25-93 (330)
151 2gkg_A Response regulator homo 29.5 92 0.0031 18.5 5.3 45 89-134 39-86 (127)
152 3n0v_A Formyltetrahydrofolate 29.5 1.7E+02 0.0059 21.7 11.1 85 3-110 90-177 (286)
153 2lpm_A Two-component response 29.1 40 0.0014 21.5 2.7 42 89-135 43-86 (123)
154 3lou_A Formyltetrahydrofolate 28.9 1.8E+02 0.0062 21.6 11.3 85 3-110 95-182 (292)
155 3p9x_A Phosphoribosylglycinami 28.7 1.6E+02 0.0053 20.9 10.4 87 3-110 2-92 (211)
156 4edg_A DNA primase; catalytic 28.4 57 0.002 24.9 3.8 35 4-38 196-230 (329)
157 2d1c_A Isocitrate dehydrogenas 28.3 77 0.0026 25.8 4.6 79 14-107 165-244 (496)
158 1dd9_A DNA primase, DNAG; topr 28.2 1.1E+02 0.0039 23.2 5.5 36 4-39 207-245 (338)
159 1xrs_B D-lysine 5,6-aminomutas 27.8 1.8E+02 0.0062 21.3 7.4 26 85-111 167-192 (262)
160 2qv7_A Diacylglycerol kinase D 27.6 1.9E+02 0.0066 21.6 9.3 67 66-137 48-115 (337)
161 2qxy_A Response regulator; reg 26.9 1.1E+02 0.0039 18.7 5.4 46 89-137 38-84 (142)
162 3t8y_A CHEB, chemotaxis respon 26.4 1.3E+02 0.0045 19.3 5.4 47 89-137 61-107 (164)
163 3tqq_A Methionyl-tRNA formyltr 26.2 2.1E+02 0.0071 21.5 8.7 42 65-110 50-91 (314)
164 2p0y_A Hypothetical protein LP 26.2 1.4E+02 0.0049 22.8 5.7 46 89-136 180-228 (341)
165 2au3_A DNA primase; zinc ribbo 26.0 92 0.0032 24.3 4.7 35 4-38 288-322 (407)
166 1mio_B Nitrogenase molybdenum 25.4 2.5E+02 0.0086 22.1 9.5 99 3-135 312-410 (458)
167 1uf3_A Hypothetical protein TT 25.2 1.5E+02 0.0051 20.0 5.4 10 102-111 67-76 (228)
168 2ppv_A Uncharacterized protein 25.1 1.6E+02 0.0055 22.5 5.7 47 89-137 169-218 (332)
169 3qk7_A Transcriptional regulat 25.1 1.9E+02 0.0064 20.6 9.1 66 65-137 32-97 (294)
170 1x92_A APC5045, phosphoheptose 24.9 53 0.0018 22.4 2.9 37 3-40 113-149 (199)
171 2i2x_B MTAC, methyltransferase 24.7 2E+02 0.0068 20.7 9.2 58 74-134 151-210 (258)
172 3iwt_A 178AA long hypothetical 24.5 1.6E+02 0.0056 19.7 5.9 40 66-107 46-89 (178)
173 2l2q_A PTS system, cellobiose- 24.5 1.3E+02 0.0044 18.5 6.8 60 66-136 25-84 (109)
174 3s81_A Putative aspartate race 24.3 74 0.0025 23.4 3.7 38 91-134 91-128 (268)
175 2yva_A DNAA initiator-associat 24.2 56 0.0019 22.2 2.9 37 3-40 109-145 (196)
176 3vzx_A Heptaprenylglyceryl pho 24.1 1.4E+02 0.0048 21.4 5.0 46 91-137 23-68 (228)
177 1xng_A NH(3)-dependent NAD(+) 24.1 2E+02 0.007 20.7 6.4 37 3-42 25-61 (268)
178 3o3m_A Alpha subunit 2-hydroxy 23.9 1.2E+02 0.004 23.7 4.9 52 88-139 323-376 (408)
179 1e2b_A Enzyme IIB-cellobiose; 23.7 1.1E+02 0.0038 18.8 3.9 42 1-42 1-42 (106)
180 3tva_A Xylose isomerase domain 23.7 2E+02 0.0069 20.5 6.8 79 15-101 99-177 (290)
181 3grc_A Sensor protein, kinase; 23.6 1.3E+02 0.0045 18.3 5.4 47 89-137 40-89 (140)
182 1y5e_A Molybdenum cofactor bio 23.5 1.7E+02 0.0058 19.5 6.2 32 74-106 44-79 (169)
183 2ojp_A DHDPS, dihydrodipicolin 23.5 2.2E+02 0.0076 20.9 7.9 63 74-137 70-136 (292)
184 2q7x_A UPF0052 protein SP_1565 23.2 1.8E+02 0.006 22.2 5.6 46 89-136 176-224 (326)
185 3bul_A Methionine synthase; tr 23.2 2.4E+02 0.0082 23.4 6.8 48 85-134 136-185 (579)
186 2vc6_A MOSA, dihydrodipicolina 23.1 2.3E+02 0.0078 20.8 8.8 63 74-137 69-135 (292)
187 3rpe_A MDAB, modulator of drug 23.0 2E+02 0.007 20.3 7.8 33 74-109 60-93 (218)
188 3lwd_A 6-phosphogluconolactona 23.0 2E+02 0.007 20.3 6.3 49 89-137 110-165 (226)
189 4aoy_A Isocitrate dehydrogenas 22.7 1.2E+02 0.004 24.0 4.6 28 14-41 185-212 (402)
190 3g1w_A Sugar ABC transporter; 22.7 2.1E+02 0.0072 20.3 9.7 68 65-137 26-95 (305)
191 2zsk_A PH1733, 226AA long hypo 22.5 67 0.0023 22.6 3.0 16 96-111 70-85 (226)
192 2x7v_A Probable endonuclease 4 22.4 2.1E+02 0.0072 20.2 7.5 77 16-100 87-169 (287)
193 2ehh_A DHDPS, dihydrodipicolin 22.4 2.4E+02 0.0081 20.8 9.1 47 91-137 87-135 (294)
194 3r7f_A Aspartate carbamoyltran 22.3 1.6E+02 0.0055 22.1 5.2 43 84-134 78-120 (304)
195 3w01_A Heptaprenylglyceryl pho 22.3 2E+02 0.0068 20.8 5.5 47 90-137 27-73 (235)
196 2v9d_A YAGE; dihydrodipicolini 22.2 2.6E+02 0.0089 21.2 9.3 63 74-137 100-166 (343)
197 3sho_A Transcriptional regulat 22.2 67 0.0023 21.5 2.9 38 2-40 86-123 (187)
198 1f6k_A N-acetylneuraminate lya 22.2 2.4E+02 0.0082 20.7 8.4 47 91-137 91-139 (293)
199 2r8w_A AGR_C_1641P; APC7498, d 21.9 2.6E+02 0.0089 21.1 9.3 62 75-137 104-169 (332)
200 1o5k_A DHDPS, dihydrodipicolin 21.8 2.5E+02 0.0085 20.8 9.4 63 74-137 81-147 (306)
201 3a5f_A Dihydrodipicolinate syn 21.7 2.4E+02 0.0083 20.7 8.8 63 74-137 70-136 (291)
202 3aek_A Light-independent proto 21.6 1.5E+02 0.005 23.4 5.1 29 79-108 358-386 (437)
203 2o2z_A Hypothetical protein; s 21.6 1.8E+02 0.0062 22.1 5.4 47 89-137 170-219 (323)
204 3obi_A Formyltetrahydrofolate 21.6 2.5E+02 0.0086 20.8 8.0 85 3-110 89-177 (288)
205 3glk_A Acetyl-COA carboxylase 21.6 62 0.0021 26.4 3.0 38 1-39 38-80 (540)
206 2eq5_A 228AA long hypothetical 21.5 1.4E+02 0.0047 20.8 4.6 15 96-110 72-86 (228)
207 2is8_A Molybdopterin biosynthe 21.5 1.9E+02 0.0063 19.2 5.8 39 66-106 27-69 (164)
208 2yxg_A DHDPS, dihydrodipicolin 21.4 2.5E+02 0.0084 20.6 9.1 47 91-137 87-135 (289)
209 3to5_A CHEY homolog; alpha(5)b 21.2 1.7E+02 0.0058 18.7 5.5 46 89-137 47-96 (134)
210 3inp_A D-ribulose-phosphate 3- 21.1 1.5E+02 0.0051 21.5 4.7 39 66-107 186-224 (246)
211 3nkl_A UDP-D-quinovosamine 4-d 21.1 1.2E+02 0.004 19.1 3.8 44 89-136 55-100 (141)
212 1tk9_A Phosphoheptose isomeras 20.7 73 0.0025 21.3 2.9 36 4-40 111-146 (188)
213 2zay_A Response regulator rece 20.7 1.6E+02 0.0054 18.1 6.6 47 89-137 42-91 (147)
214 2l8b_A Protein TRAI, DNA helic 20.6 1.4E+02 0.0048 20.8 4.2 41 89-134 139-180 (189)
215 2rfg_A Dihydrodipicolinate syn 20.3 2.7E+02 0.0091 20.6 8.6 62 75-137 70-135 (297)
216 3u9t_A MCC alpha, methylcroton 20.3 3.8E+02 0.013 22.4 7.8 19 89-107 90-108 (675)
217 1s8n_A Putative antiterminator 20.2 2E+02 0.0068 19.1 5.8 46 89-136 48-93 (205)
218 2xhz_A KDSD, YRBH, arabinose 5 20.1 73 0.0025 21.2 2.7 37 3-40 96-132 (183)
219 3cpr_A Dihydrodipicolinate syn 20.1 2.7E+02 0.0093 20.6 9.2 47 91-137 103-151 (304)
220 1tjy_A Sugar transport protein 20.0 2.5E+02 0.0087 20.2 8.6 42 90-135 51-92 (316)
221 3ks9_A Mglur1, metabotropic gl 20.0 3.3E+02 0.011 21.5 11.8 95 2-109 196-292 (496)
222 1nui_A DNA primase/helicase; z 20.0 91 0.0031 22.4 3.4 32 3-36 199-230 (255)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=8.2e-27 Score=161.52 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=107.6
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchH----HHHHHHHHHH---HHHHHHHHHhhhhc
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRK----KLRLLRLKGY---QLALSFKDICNDFF 73 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (172)
|+|++||||+|+++.+..++++|..++...+++|+++||.+........ .....+...+ ...+.+.+.+...
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATT- 81 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7899999999999999999999999999999999999999876443211 1122222222 3333333333333
Q ss_pred CC-cEEEEEecCCchHHHHHH-HHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 74 NT-NVEIIVTEGDQEGARIAA-LVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 74 ~~-~~~~~~~~g~~~~~~I~~-~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
++ ++++.+..|++. +.|++ ++++.++||||||+++++.+.++++||+ +++++++||||+||
T Consensus 82 g~~~~~~~~~~g~~~-~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 82 SAPNLKTEISYGIPK-HTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp SCCCCEEEEEEECHH-HHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCcceEEEEecCChH-HHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 67 889999999985 99999 9999999999999999999999999985 99999999999986
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.94 E-value=1.7e-25 Score=157.62 Aligned_cols=134 Identities=20% Similarity=0.197 Sum_probs=104.7
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC-----C--ccc-------hH----HHHHHHHHH---HH
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL-----N--SRN-------RK----KLRLLRLKG---YQ 60 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~-----~--~~~-------~~----~~~~~~~~~---~~ 60 (172)
+|++||||+|+++.+..++++|..++...+++|+++||.++. . ... +. .....++.. +.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999998754 1 110 10 011122222 22
Q ss_pred HHHHHHHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCC
Q 030760 61 LALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQP 137 (172)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~ 137 (172)
..+.+.+.+.. .+++++..+..|++. +.|++++++.++||||||+++++++.++++||+ +|+++++|||||+|++
T Consensus 84 ~l~~~~~~~~~-~g~~~~~~v~~G~~~-~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~ 160 (162)
T 1mjh_A 84 KMENIKKELED-VGFKVKDIIVVGIPH-EEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 160 (162)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEEECHH-HHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCC
T ss_pred HHHHHHHHHHH-cCCceEEEEcCCCHH-HHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCC
Confidence 33333333333 478888888899985 999999999999999999999999999999986 9999999999999864
No 3
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.94 E-value=2.1e-26 Score=160.27 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---c-----hHHHHHHHHHHHHHHHHHHHHhhhh
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---N-----RKKLRLLRLKGYQLALSFKDICNDF 72 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (172)
|+|++||||+|+|+.+..++++|..++...+++|+++||.++.... . ....+..++..+...+.+++++++.
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999998764321 0 0001122333344455555555554
Q ss_pred cCCc-EEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCC
Q 030760 73 FNTN-VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPA 138 (172)
Q Consensus 73 ~~~~-~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~ 138 (172)
+++ ++..+..|++. ++|+++++++++||||||+++++.+. +++||. +++++++||||++|++.
T Consensus 84 -~~~~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 84 -GIDPAHRWLVWGEPR-EEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp -TCCGGGEEEEESCHH-HHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC
T ss_pred -CCCcceEEEecCCHH-HHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCC
Confidence 555 56788889996 99999999999999999999999999 899975 99999999999999753
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=2.6e-25 Score=157.91 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=105.3
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----h-----------HHHHHHHHHHHHHHHHH
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----R-----------KKLRLLRLKGYQLALSF 65 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~ 65 (172)
+|++||||+|+++.+..++++|..++.+.+++|+++||.++..... . ...+..++..+...+.+
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999987643210 0 11111222223333334
Q ss_pred HHHhhhhcCCcEEE--EEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCCCC
Q 030760 66 KDICNDFFNTNVEI--IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAASP 141 (172)
Q Consensus 66 ~~~~~~~~~~~~~~--~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~~ 141 (172)
.+.+... ++++++ .+..|++. +.|+++++++++||||||+++++++.++++||. +|+++++|||||+|......
T Consensus 84 ~~~~~~~-g~~~~~~~~~~~g~~~-~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~~~ 161 (170)
T 2dum_A 84 AEEVKRA-FRAKNVRTIIRFGIPW-DEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDENE 161 (170)
T ss_dssp HHHHHHH-TTCSEEEEEEEEECHH-HHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCCC-
T ss_pred HHHHHHc-CCceeeeeEEecCChH-HHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCccc
Confidence 4443333 777877 88889985 999999999999999999999999999999985 99999999999999665433
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=2.7e-25 Score=155.77 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=104.2
Q ss_pred CCceEEEEEec--CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030760 1 MDVKKIVVIVE--DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFF 73 (172)
Q Consensus 1 m~~k~Ilv~~d--~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
|+|++||||+| +++.+..++++|..++...+++|+++||.+..... .....+..++..++..+.+.+.+...
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 91 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR- 91 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 67999999999 99999999999999999999999999999875431 11111222223333344444444444
Q ss_pred CC-cEEEEEec-CCchHHHHHHH-HHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 74 NT-NVEIIVTE-GDQEGARIAAL-VREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 74 ~~-~~~~~~~~-g~~~~~~I~~~-a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
++ .+++.+.. |++. ++|+++ |++.++||||||++++++++. ++||+ +++++++||||+||
T Consensus 92 g~~~~~~~v~~~g~~~-~~I~~~~a~~~~~DlIV~G~~g~~~~~~-~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 GVNQVEPLVYEGGDVD-DVILEQVIPEFKPDLLVTGADTEFPHSK-IAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp TCSSEEEEEEECSCHH-HHHHHTHHHHHCCSEEEEETTCCCTTSS-SCSCHHHHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEeCCCHH-HHHHHHHHHhcCCCEEEECCCCCCccce-eecchHHHHHHhCCCCEEEeC
Confidence 67 58899988 9885 999999 999999999999999999874 88975 99999999999986
No 6
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.93 E-value=1.6e-25 Score=157.28 Aligned_cols=129 Identities=24% Similarity=0.218 Sum_probs=103.7
Q ss_pred CCceEEEEEecC-CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEE
Q 030760 1 MDVKKIVVIVED-VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (172)
Q Consensus 1 m~~k~Ilv~~d~-s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
|+|++||||+|+ ++.+..++++|..++...+++|+++||.+....... ...+..+...+.+.+.+.+. +++++.
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~-g~~~~~ 96 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKD----EDIIEAKETLSWAVSIIRKE-GAEGEE 96 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCH----HHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccH----HHHHHHHHHHHHHHHHHHhc-CCCceE
Confidence 789999999999 999999999999999999999999999986543221 12222333333444444432 555554
Q ss_pred --EEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 80 --IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 80 --~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
.+..|++. ++|+++|++.++||||||+++++++.++++||+ +++++++||||+||
T Consensus 97 ~~~v~~G~~~-~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 97 HLLVRGKEPP-DDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp EEEESSSCHH-HHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred EEEecCCCHH-HHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 45678885 999999999999999999999999999999985 99999999999986
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.93 E-value=1.2e-25 Score=155.76 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=105.6
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---------ch--HHHHHHHHHHHHHHHHHHHHhh
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---------NR--KKLRLLRLKGYQLALSFKDICN 70 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (172)
+|++||||+|+|+.+..++++|..++...+++|+++||.+..... .. ...+..++..+...+.+.+.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999864310 00 0012233334444455555555
Q ss_pred hhcCCcE---EEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEE
Q 030760 71 DFFNTNV---EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAI 134 (172)
Q Consensus 71 ~~~~~~~---~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv 134 (172)
.. ++++ +..+..|++. +.|++++++.++||||||+++++++.++++||. +++++++||||+|
T Consensus 81 ~~-g~~~~~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 81 EL-GVPADKVRAFVKGGRPS-RTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HT-TCCGGGEEEEEEESCHH-HHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred hc-CCCccceEEEEecCCHH-HHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 43 6666 8889999985 999999999999999999999999999999985 9999999999986
No 8
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.93 E-value=1.9e-25 Score=153.27 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=101.8
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-cchH-HHHHHHHHHHHHHHHHHHHhhhhcCC-cEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-RNRK-KLRLLRLKGYQLALSFKDICNDFFNT-NVE 78 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (172)
+|++||||+|+++.+..++++|..++...+++++++||.++... .... .....+...+...+.+.++.+. .++ +++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~ 79 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-TGVPKED 79 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-HCCCGGG
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-cCCCccE
Confidence 48999999999999999999999999999999999999975321 1100 0011122222333344444443 377 777
Q ss_pred EEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 79 ~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
+.+..|++. +.|++++++.++||||||+++++++.++++||. +++++++||||++|
T Consensus 80 ~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 80 ALLLEGVPA-EAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp EEEEESSHH-HHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEecCHH-HHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 888899985 999999999999999999999999999999985 99999999999986
No 9
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.93 E-value=8.7e-25 Score=150.00 Aligned_cols=128 Identities=21% Similarity=0.318 Sum_probs=103.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEecCCCccchH---HHHHHH----HHHHHHHHHHHHHhhhhcC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNL-LRFGDVVTLLHVFPSLNSRNRK---KLRLLR----LKGYQLALSFKDICNDFFN 74 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la-~~~~~~l~~l~V~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~ 74 (172)
|++||||+|+|+.+..++++|..++ ...+++|+++||.++....... ..+..+ +..+...+.+.+.+.. .+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g 79 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE-KG 79 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 6899999999999999999999999 9999999999999886543211 111122 2223333444444443 48
Q ss_pred CcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 75 ~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
+++++.+..|++. +.|+++++ ++||||||+++++++.+++ ||. +++++++||||++|
T Consensus 80 ~~~~~~v~~g~~~-~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 80 INPFVVIKEGEPV-EMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp CCCEEEEEESCHH-HHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred CCeEEEEecCChH-HHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 8899999999985 99999999 8999999999999999988 985 99999999999986
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=5.8e-25 Score=155.63 Aligned_cols=135 Identities=17% Similarity=0.080 Sum_probs=101.6
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE--EEecCCCc-cchH--HHHH---HHHHHHHHHHHHHHHhhhh
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL--HVFPSLNS-RNRK--KLRL---LRLKGYQLALSFKDICNDF 72 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l--~V~~~~~~-~~~~--~~~~---~~~~~~~~~~~~~~~~~~~ 72 (172)
+.+++||||+|+|+.+..+++||..++. .+++|+++ ||.+.... .... .... .++..++..+.+.+.+..
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 92 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN- 92 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT-
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3689999999999999999999999999 99999999 88765432 1000 0011 111222333333444433
Q ss_pred cCCc-EEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCC
Q 030760 73 FNTN-VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPA 138 (172)
Q Consensus 73 ~~~~-~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~ 138 (172)
.+++ +++.+..|++. +.|+++|++.++||||||+++++++.++++||+ +|+++++|||||||++.
T Consensus 93 ~gv~~v~~~v~~G~~~-~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 93 AGAKNVEERPIVGAPV-DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp TTCCEEEEEEECSSHH-HHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred cCCCeEEEEEecCCHH-HHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 3777 88889999985 999999999999999999999999999999975 99999999999998653
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.92 E-value=1.3e-24 Score=149.84 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=105.3
Q ss_pred ceEEEEEecCCHH--HHHHHHHHHHhhccCCCEEEEEEEecCCCccch------HHHHHHHHHHHHHHHHHHHHhhhh--
Q 030760 3 VKKIVVIVEDVDA--ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR------KKLRLLRLKGYQLALSFKDICNDF-- 72 (172)
Q Consensus 3 ~k~Ilv~~d~s~~--s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (172)
.|+||||+|+|+. +..++++|..++...+++|+++||.+....... ...+..++..++..+.+++++++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 3799999999999 999999999999999999999999987532210 011223445556666777777663
Q ss_pred cCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
++.++++.+..|++. +.|++++++.++||||||+++ +++.++++||+ +++++++||||+||
T Consensus 81 ~~~~v~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 81 PEDRMHFHVAEGSPK-DKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp CGGGEEEEEEESCHH-HHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEecChH-HHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 356788999999885 999999999999999999995 77888899985 99999999999986
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=7.3e-24 Score=151.14 Aligned_cols=136 Identities=22% Similarity=0.333 Sum_probs=94.3
Q ss_pred CceEEEEEecCCH---------HHHHHHHHHHHhh-cc--CCCEEEEEEEecCCCc-c--------chHHH-HHH---HH
Q 030760 2 DVKKIVVIVEDVD---------AARAALLWALQNL-LR--FGDVVTLLHVFPSLNS-R--------NRKKL-RLL---RL 56 (172)
Q Consensus 2 ~~k~Ilv~~d~s~---------~s~~al~~a~~la-~~--~~~~l~~l~V~~~~~~-~--------~~~~~-~~~---~~ 56 (172)
.+++||||+|+++ .+..+++||+.++ +. .+++|+++||.+.... . ..... +.. .+
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 5899999999999 9999999999987 44 6899999999864321 1 01111 111 11
Q ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEE
Q 030760 57 KGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAI 134 (172)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv 134 (172)
..+...+.+.+.+.. .++++++.+..|++. +.|++++++.++||||||+++++++.++++||+ +|+++++||||||
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~-~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv 161 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGDPK-DVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTI 161 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEEEEESCHH-HHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecCCHH-HHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEE
Confidence 122233333333333 378889889999985 999999999999999999999999999999975 9999999999999
Q ss_pred eCCCC
Q 030760 135 KQPAA 139 (172)
Q Consensus 135 ~~~~~ 139 (172)
|.+..
T Consensus 162 ~~~~~ 166 (175)
T 2gm3_A 162 KRNAD 166 (175)
T ss_dssp ECCGG
T ss_pred cCCcC
Confidence 96543
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.90 E-value=2.1e-23 Score=143.56 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=99.0
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC-CCcc---chH-HHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS-LNSR---NRK-KLRLLRLKGYQLALSFKDICNDFFNTN 76 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (172)
+|++||||+|+++.+..++++|..++...+++|+++||.+. +... ... ..+..+...+...+.+++++++. +++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 79 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV-DYP 79 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS-SSC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 48999999999999999999999999999999999999843 2111 111 11111111123344445555443 555
Q ss_pred E-EEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCC
Q 030760 77 V-EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQP 137 (172)
Q Consensus 77 ~-~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~ 137 (172)
+ +..+..|++. +.|++++++.++||||||++ ++++.++ ||. +++++++||||++|++
T Consensus 80 ~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~-~~~~~~l--gs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 80 ISEKLSGSGDLG-QVLSDAIEQYDVDLLVTGHH-QDFWSKL--MSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp CCCEEEEEECHH-HHHHHHHHHTTCCEEEEEEC-CCCHHHH--HHHHHHHHTTCCSEEEEEECC
T ss_pred ceEEEEecCCHH-HHHHHHHHhcCCCEEEEeCC-Cchhhhh--cchHHHHHhcCCCCEEEeeCC
Confidence 5 5677789985 99999999999999999999 8888883 664 9999999999999965
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=8.5e-23 Score=158.04 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=113.2
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chH-HHHHHHHHHHHHHHHHHHHhhh--h
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRK-KLRLLRLKGYQLALSFKDICND--F 72 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~--~ 72 (172)
|+||+||||+|+|+.+..+++||+.+|++.+++|+++||.+..... ... .....+...+...+.++++.+. .
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE 84 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999998653211 111 1112222222233333333332 3
Q ss_pred cCCcEEEEEe-cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCCCCCCcccCcC
Q 030760 73 FNTNVEIIVT-EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAASPQLRTQTSA 149 (172)
Q Consensus 73 ~~~~~~~~~~-~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~~~~~~~~~~ 149 (172)
.++++++.+. .|++. +.|++++++.++||||||+++++.+.++++||+ +++++++||||++++.... +.+.+..+
T Consensus 85 ~~v~~~~~~~~~g~~~-~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~-~~~~Ilva 162 (319)
T 3olq_A 85 AGIQIDIKVIWHNRPY-EAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKEWP-EYGTIVVA 162 (319)
T ss_dssp TTCCEEEEEEECSCHH-HHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSCCC-TTCEEEEE
T ss_pred cCCeEEEEEEecCChH-HHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcccc-cCCeEEEE
Confidence 5899999998 89986 999999999999999999999999999999986 9999999999999976554 34555555
Q ss_pred CcCCC
Q 030760 150 ATTPD 154 (172)
Q Consensus 150 ~~~~~ 154 (172)
.+++.
T Consensus 163 ~D~s~ 167 (319)
T 3olq_A 163 ANLSN 167 (319)
T ss_dssp CCCSC
T ss_pred ECCCC
Confidence 44443
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=1.1e-22 Score=156.01 Aligned_cols=145 Identities=10% Similarity=0.037 Sum_probs=112.4
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-------chHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-------NRKKLRLLRLKGYQLALSFKDICNDFF 73 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
|+|++||||+|+++.+..+++||..+|++.+++|+++||.+..... .....+..++..+...+.+.+.+...
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 98 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAA- 98 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 6799999999999999999999999999999999999998775421 11122233333444444555555443
Q ss_pred CCcEEE-EEe-cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCCC-CCCcccCc
Q 030760 74 NTNVEI-IVT-EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAAS-PQLRTQTS 148 (172)
Q Consensus 74 ~~~~~~-~~~-~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~-~~~~~~~~ 148 (172)
+++++. .+. .|++. ++| ++++.++|+||||+++++.+.++++||. +++++++||||++++.... .+.+.+..
T Consensus 99 g~~~~~~~v~~~g~~~-~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~~~~~~~Ilv 175 (294)
T 3loq_A 99 GIKAEVIKPFPAGDPV-VEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMVVNSLFDRVLV 175 (294)
T ss_dssp TCEEEECSSCCEECHH-HHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTTTTCTTSEEEE
T ss_pred CCCcceeEeeccCChh-Hhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCccccCccCCEEEE
Confidence 888888 777 88885 888 9999999999999999999999999975 9999999999999976532 33444444
Q ss_pred C
Q 030760 149 A 149 (172)
Q Consensus 149 ~ 149 (172)
+
T Consensus 176 ~ 176 (294)
T 3loq_A 176 A 176 (294)
T ss_dssp E
T ss_pred E
Confidence 4
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.88 E-value=3.7e-22 Score=152.91 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=106.0
Q ss_pred CceEEEEEecCCHH-------HHHHHHHHHHhhccCCCEEEEEEEecCCCccchH-HHHHHHHHHHHHHHHHHHHhhhhc
Q 030760 2 DVKKIVVIVEDVDA-------ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRK-KLRLLRLKGYQLALSFKDICNDFF 73 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~-------s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
.+++||||+|+++. +..++++|..++...+++++++||.+........ .....+...+...+.+.++.+++
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 211 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEY- 211 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHc-
Confidence 47999999999998 9999999999999999999999999864322110 00222333344455556666655
Q ss_pred CC-cEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCC
Q 030760 74 NT-NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 74 ~~-~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~ 139 (172)
++ .++..+..|++. ++|++++++.++||||||+++++++.++++||+ +++++++||||++|++..
T Consensus 212 g~~~~~~~v~~g~~~-~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~ 279 (290)
T 3mt0_A 212 GFSDEQLHIEEGPAD-VLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPDDI 279 (290)
T ss_dssp TCCTTTEEEEESCHH-HHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCHHH
T ss_pred CCCcceEEEeccCHH-HHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCCCC
Confidence 55 356778889885 999999999999999999999999999999986 999999999999996544
No 17
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.88 E-value=6.4e-22 Score=153.12 Aligned_cols=141 Identities=19% Similarity=0.192 Sum_probs=113.0
Q ss_pred CceEEEEEecCCH-------HHHHHHHHHHHhhccC--CCEEEEEEEecCCCccc------hHHHHHHHHHHHHHHHHHH
Q 030760 2 DVKKIVVIVEDVD-------AARAALLWALQNLLRF--GDVVTLLHVFPSLNSRN------RKKLRLLRLKGYQLALSFK 66 (172)
Q Consensus 2 ~~k~Ilv~~d~s~-------~s~~al~~a~~la~~~--~~~l~~l~V~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 66 (172)
.+++||||+|+++ .+..++++|..++... +++|+++||.+...... .......++..++..+.+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMK 234 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHH
Confidence 4789999999998 6799999999999998 99999999998754321 1122334444555566666
Q ss_pred HHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCCCCCC
Q 030760 67 DICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAASPQL 143 (172)
Q Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~~~~ 143 (172)
++.++.+...++.++..|++. ++|++++++.++||||||+++++++.++++||. +|+++++||||++|++....|.
T Consensus 235 ~~~~~~~~~~~~~~v~~g~~~-~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~~~p~ 312 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGLPE-QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDGFTCPI 312 (319)
T ss_dssp HHHHHTTCCGGGEEEEESCHH-HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTTCCCCC
T ss_pred HHHHHhCCCcccEEEecCCcH-HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCCCCCCC
Confidence 666665333456777889985 999999999999999999999999999999986 9999999999999987665543
No 18
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=7.2e-22 Score=152.53 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=106.5
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc------chHHHHHHHHHHHHHHHHHHHHhhh---
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR------NRKKLRLLRLKGYQLALSFKDICND--- 71 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (172)
+.+++||||+|+++.+..+++||..+|++.+++|+++||.++.... .....+..++..+...+.+.+.+.+
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999998743211 1112222233333344444444443
Q ss_pred -hcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCC
Q 030760 72 -FFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 72 -~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~ 139 (172)
.+++++++.+..|++. +.|+++++ ++||||||+++++.+.++++||+ +++++++||||+++....
T Consensus 97 ~~~~~~~~~~~~~g~~~-~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 97 RAGPPTVHSEIVPAAAV-PTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDS 164 (309)
T ss_dssp SSCCSCEEEEEESSCHH-HHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCC
T ss_pred cCCCceEEEEEecCCHH-HHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCcc
Confidence 2488999999999985 99999986 79999999999999999999985 999999999999997653
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.87 E-value=3.4e-22 Score=153.09 Aligned_cols=138 Identities=14% Similarity=0.053 Sum_probs=109.4
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
|+|++||||+|+++.+..+++||..+|.+.+++|+++||.++. ...+.+++ +.+.+.. .++++++.
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----~~~~~l~~--------~~~~~~~-~~~~~~~~ 70 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----DHSAALND--------LAQELRE-EGYSVSTN 70 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----CCHHHHHH--------HHHHHHH-TTCCEEEE
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----HHHHHHHH--------HHHHHhh-CCCeEEEE
Confidence 4689999999999999999999999999999999999999741 11112221 1222222 48899998
Q ss_pred Ee-cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCCCCCCCcccCcCCcCCC
Q 030760 81 VT-EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPAASPQLRTQTSAATTPD 154 (172)
Q Consensus 81 ~~-~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~~~~~~~~~~~~~~~ 154 (172)
+. .|++. +.|++++++.++||||||+++++.+.+.++||+ +++++++||||++++.... +.+.+..+.++++
T Consensus 71 ~~~~g~~~-~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~~~-~~~~Ilva~D~s~ 145 (290)
T 3mt0_A 71 QAWKDSLH-QTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTARPW-TGGKILAAVDVGN 145 (290)
T ss_dssp EECSSSHH-HHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCSCS-TTCEEEEEECTTC
T ss_pred EEeCCCHH-HHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCCCC-CCCeEEEEECCCC
Confidence 88 46775 999999999999999999999999999999986 9999999999999954333 5566666655444
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.87 E-value=1.1e-21 Score=134.55 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=92.5
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe-cC-C-Cc------cc--hHHHHHHHHHHHHHHHHHHHHh
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF-PS-L-NS------RN--RKKLRLLRLKGYQLALSFKDIC 69 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~-~~-~-~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 69 (172)
.+|++||||+|+|+.+..++++|..++...+++|+++||. +. + .. .. ....+...+..+...+.+ +.+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 3689999999999999999999999999999999999998 53 1 00 00 111112222222233333 221
Q ss_pred -hhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 70 -NDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 70 -~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
....+ ++++.+..|++. +.|++++++.++||||||++++ +.+.+++++++||||++|
T Consensus 81 ~~~~~~-~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~g~-------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRIGPLS-EEVKKFVEGKGYELVVWACYPS-------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEECSCHH-HHHHHHHTTSCCSEEEECSCCG-------GGTHHHHHHSSSEEEECC
T ss_pred hhccCC-cceEEEEcCCHH-HHHHHHHHhcCCCEEEEeCCCC-------chHHHHHHhCCCceEeeC
Confidence 12235 778888899985 9999999999999999999976 334599999999999986
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=1.3e-21 Score=148.01 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=106.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch----------HH-------HHHHHHHHHHHHHHHH
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR----------KK-------LRLLRLKGYQLALSFK 66 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~ 66 (172)
|+||||+|+|+.+..+++||..+|.+.+++++++||.+....... .. .+..++..++..+.+.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999865321100 00 1111222233334444
Q ss_pred HHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCc-chhHhhhhHH--HHhccCCceEEEEeCCCCCCCC
Q 030760 67 DICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRS-FLHKLAMSHN--DISSSFNCRVLAIKQPAASPQL 143 (172)
Q Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~-~~~~~~~gs~--~i~~~~~~PVlvv~~~~~~~~~ 143 (172)
+.+.. .++++++.+..|++. +.|+++ +.++||||||+++++ .+.++++||+ +++++++|||+++|+... +.
T Consensus 81 ~~~~~-~g~~~~~~~~~g~~~-~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~~--~~ 154 (268)
T 3ab8_A 81 QSALA-AGVAVEAVLEEGVPH-EAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEPV--EL 154 (268)
T ss_dssp HHHHH-TTCCEEEEEEEECHH-HHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSCC--CC
T ss_pred HHHHh-CCCCeEEEEecCCHH-HHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCCC--CC
Confidence 44443 378899999999996 999999 889999999999998 8999899985 999999999999997654 23
Q ss_pred cccCcCCc
Q 030760 144 RTQTSAAT 151 (172)
Q Consensus 144 ~~~~~~~~ 151 (172)
+.+..+.+
T Consensus 155 ~~ilv~~d 162 (268)
T 3ab8_A 155 EGALLGYD 162 (268)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEC
Confidence 44444433
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.86 E-value=9.8e-21 Score=145.14 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=103.0
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+++||||+|+++.+..++++|..++...+++|+++||.+... .++..+.+.+.+.+. +++++..+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~~-~~~~~~~~ 234 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------KTADLRVMEEVIGAE-GIEVHVHI 234 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------CHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------HHHHHHHHHHHHHHc-CCcEEEEE
Confidence 4789999999999999999999999999999999999998754 011122223333333 77788888
Q ss_pred ecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCCC
Q 030760 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQPA 138 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~~ 138 (172)
..|++. ++|++++++.++||||||+++++++.++++||. +++++++||||++|++.
T Consensus 235 ~~g~~~-~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 235 ESGTPH-KAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp ECSCHH-HHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred ecCCHH-HHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 899885 999999999999999999999999999999975 99999999999999764
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.85 E-value=9e-21 Score=146.38 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=102.9
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---chHHHHHHHHHHHHHHHHHHHHhhhhcCCcEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---NRKKLRLLRLKGYQLALSFKDICNDFFNTNVE 78 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
.+++||||+|+++.+..++++|..++...+++|+++||.++.... ........++..+.+.+.+..+...+++++++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 249 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAIT 249 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEE
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 368999999999999999999999999999999999998764321 00111122222222222233333333588899
Q ss_pred EEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEeCC
Q 030760 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIKQP 137 (172)
Q Consensus 79 ~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~~~ 137 (172)
..+..|++. ++|+++++ ++||||||+++++++.++++||. +|+++++||||++|++
T Consensus 250 ~~~~~g~~~-~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 250 RVVVRDQPA-RQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp EEEESSCHH-HHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred EEEEcCCHH-HHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 999999885 99999997 89999999999999999999986 9999999999999853
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.75 E-value=3.5e-18 Score=129.12 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=92.8
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+++||||+|+++.+..++++|..++...+++++++||.++.. . .+...+.+.+...+. +++++..+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~--------~----~~~~l~~~~~~l~~~-~~~~~~~~ 219 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA--------R----AEAWALEAEAYLRDH-GVEASALV 219 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------H----HHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH--------H----HHHHHHHHHHHHHHc-CCceEEEE
Confidence 4689999999999999999999999999999999999987621 1 111222233333333 78888888
Q ss_pred ecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
..|++. ++|++++++. ||||||+ ++.++++||. +++++++||||++|
T Consensus 220 ~~g~~~-~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 220 LGGDAA-DHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp ECSCHH-HHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred eCCChH-HHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 889885 9999999998 9999999 6778889975 99999999999986
No 25
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=95.28 E-value=0.31 Score=37.18 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=66.6
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCE-EEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDV-VTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~-l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.++|+|++.+..+|..++..+.+.....+.. +.++|+...... .. ....+.++++|+.. ++++.+.-
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~---~s--------~~~~~~v~~~a~~l-gi~~~v~~ 91 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---SA--------ERDEEFCKEFAKER-NMKIFVGK 91 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---HH--------HHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc---cc--------HHHHHHHHHHHHHc-CCcEEEEE
Confidence 4689999999999999999988877666777 999999865321 11 11122345555554 66665544
Q ss_pred ec--------CCc--------hHHHHHHHHHHhCCCEEEEeecCCcchhH
Q 030760 82 TE--------GDQ--------EGARIAALVREIGASALVVGLHDRSFLHK 115 (172)
Q Consensus 82 ~~--------g~~--------~~~~I~~~a~~~~~DllVmg~~~~~~~~~ 115 (172)
.. |.. ....+.+.+++.+++.|+.|.+.....+.
T Consensus 92 ~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et 141 (317)
T 1wy5_A 92 EDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLET 141 (317)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHH
T ss_pred EechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHH
Confidence 32 211 11355667888999999999875443343
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.09 E-value=0.12 Score=41.77 Aligned_cols=103 Identities=18% Similarity=0.082 Sum_probs=69.7
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
-++|+|++.+..+|..++..+.++....+..++++||...... .. .....+.++++|+.. ++++.+.-.
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg--~~--------s~~~~~~v~~~~~~l-gi~~~v~~~ 86 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG--RE--------SEEEMEFVKRFCVER-RILCETAQI 86 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT--HH--------HHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc--cc--------cHHHHHHHHHHHHHc-CCcEEEEEe
Confidence 4689999999999999999998888777889999999865321 11 111223456666665 666665543
Q ss_pred c--------CCch--------HHHHHHHHHHhCCCEEEEeecCCcchhHh
Q 030760 83 E--------GDQE--------GARIAALVREIGASALVVGLHDRSFLHKL 116 (172)
Q Consensus 83 ~--------g~~~--------~~~I~~~a~~~~~DllVmg~~~~~~~~~~ 116 (172)
. |... ...+.+++++.+++.|+.|.+.....+.+
T Consensus 87 ~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~ 136 (464)
T 3a2k_A 87 DVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETI 136 (464)
T ss_dssp CCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHH
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHH
Confidence 2 1111 24556777888999999998865444443
No 27
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=93.10 E-value=0.3 Score=34.16 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=68.7
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
-|||++++.++..+-++++.+-.+.+ .|.+|+++-......+..+. .++.+. + ++ ...
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~A~~fi~~~--------------~l~~l~----~-~v--~~~ 62 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTNGRKFINGE--------------ILKQFC----D-NY--YDE 62 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTGGGGGSCHH--------------HHHHHC----S-CE--ECT
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcCHHHHhhHH--------------HHHHhc----C-CE--Eec
Confidence 48999999999988888887766665 57888877655443332221 112221 2 11 111
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhccCCceEEEEe
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISSSFNCRVLAIK 135 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~~~~~PVlvv~ 135 (172)
...+. ....+. ...+|++|+..-.-..+.++-.| ++ .++....+|+++++
T Consensus 63 ~~~~~-~~hi~l--~~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 63 FEDPF-LNHVDI--ANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp TTCTT-CCHHHH--HHTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred CCCCc-cccccc--cchhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 11111 123333 34589999999888888888777 22 66777899999998
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=92.98 E-value=0.56 Score=36.04 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=60.4
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
+.+|+|++.+..+|...+..+.+.....+-.+.++|+.....+ +. . .+.+++++++. ++++.+...
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~--~e---t--------~~~v~~~~~~~-gi~l~v~~~ 111 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF--QE---M--------YRFRDQMVEEM-GLDLITHIN 111 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC--HH---H--------HHHHHHHHHTT-TCCEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC--HH---H--------HHHHHHHHHHc-CCCEEEEeC
Confidence 5689999999999999999998887655667889999866442 11 1 11223444443 555554432
Q ss_pred c-----CCc-h------------HHHHHHHHHHhCCCEEEEeecCC
Q 030760 83 E-----GDQ-E------------GARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 83 ~-----g~~-~------------~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
. |.+ . -+.+.+.++++++|.++.|.+.-
T Consensus 112 ~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 112 PDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp --------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred chHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 1 211 0 02466677788999999998764
No 29
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=92.54 E-value=0.28 Score=34.52 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=69.5
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+++||++++.++..+-++.+.+..+.+. |.+|+++-......+..+.. ++. ..+. +.-
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~~A~~fi~~~~--------------l~~----l~~~---~~d 58 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH-FDEVNILFSPSSKNFINTDV--------------LKL----FCDN---LYD 58 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT-SSCEEEEECGGGGGTSCGGG--------------GGG----TSSC---EEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEchhHHHHHHHHH--------------HHH----HhCC---ccc
Confidence 3689999999999888998888877654 78888877654433333221 111 1122 111
Q ss_pred ecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhccCCceEEEEe
Q 030760 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISSSFNCRVLAIK 135 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~~~~~PVlvv~ 135 (172)
..+.. .+.+..-...+|++|+..-.-..+.++-.| ++ .++....+|+++++
T Consensus 59 ~~~~~---~~~hi~l~~~aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvlaP 114 (181)
T 1g63_A 59 EIKDP---LLNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFP 114 (181)
T ss_dssp TTTCT---TCCHHHHHHTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEE
T ss_pred ccCCC---CCccccccccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEEe
Confidence 11110 122221234589999999888888888888 32 55566899999998
No 30
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=92.10 E-value=1.2 Score=36.03 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHH
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (172)
|+--....+|..|.+.+...+.+|.+|++.++....... .....+.+.++++.++.....+...+..|++. +.
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~------~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~-~~ 118 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGI------RQYEFMLKGLQELEVSLSRKKIPSFFLRGDPG-EK 118 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCH------HHHHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCH------HHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHH-HH
Confidence 333334456777877776667789999999875432111 11222223333333321122234455679996 99
Q ss_pred HHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
|.+.+++.+++.|+.-........+. -..+....+|++..+..
T Consensus 119 l~~l~~~~~~~~V~~~~~~~~~~~~~---~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 119 ISRFVKDYNAGTLVTDFSPLRIKNQW---IEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHHHHHTTCSEEEEECCCSHHHHHH---HHHHHHHCCSCEEEECC
T ss_pred HHHHHHHcCCCEEEEecccchhHHHH---HHHHHHHcCCEEEEEeC
Confidence 99999999999999865433211111 11444445888877653
No 31
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=91.98 E-value=0.12 Score=37.32 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=64.1
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
..++|++++.++..+-++.+.+-.+.+ .+ +|+++--.....+..+.. + . .+.+ +
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~T~~A~~fv~~~~-----------------~-~--~~~~----v 71 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVVTKSSLHFLDKLS-----------------L-P--QEVT----L 71 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEECTGGGGTCCGGG-----------------S-C--TTCE----E
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEEcchHHHhcCHHH-----------------h-h--cCCe----E
Confidence 357999999999888888887777765 45 777776543322222110 0 0 0111 1
Q ss_pred ecCC-------chHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhccC--CceEEEEeC
Q 030760 82 TEGD-------QEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISSSF--NCRVLAIKQ 136 (172)
Q Consensus 82 ~~g~-------~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~~~--~~PVlvv~~ 136 (172)
..+. ..+..+.+..-...+|++|+..-.-..+.++-.| ++ .+++.+ .+||++++-
T Consensus 72 ~~d~~~~~~~~~~~~~i~hi~l~~~aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPa 140 (209)
T 1mvl_A 72 YTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPA 140 (209)
T ss_dssp ECTTHHHHHCSSTTSCCHHHHHHHHCSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEEC
T ss_pred EeCccccccccccCCCccchhhcccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEEC
Confidence 1111 0011222222223389999999988888988888 33 333443 799999984
No 32
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=91.57 E-value=0.7 Score=36.88 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=62.9
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhcc-CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLR-FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~-~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.++|+|++.+..+|..++..+.++... .+.+++++||....... .. . ..+.++++|+.. ++++.+.-
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~-s~--~--------~~~~v~~~~~~l-gi~~~v~~ 80 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSAN-AD--A--------WVTHCENVCQQW-QVPLVVER 80 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSS-HH--H--------HHHHHHHHHHHT-TCCEEEEC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcc-cH--H--------HHHHHHHHHHHc-CCcEEEEE
Confidence 468999999999999999999888766 68899999998654311 11 1 122346666664 66665543
Q ss_pred ec----CCchHHHHHHHHHH-------hCCCEEEEeecCCcchhH
Q 030760 82 TE----GDQEGARIAALVRE-------IGASALVVGLHDRSFLHK 115 (172)
Q Consensus 82 ~~----g~~~~~~I~~~a~~-------~~~DllVmg~~~~~~~~~ 115 (172)
.. |... +.....++. .+++.|+.|.+.....+.
T Consensus 81 ~~~~~~~~~~-e~~aR~~Ry~~l~~~a~~~~~i~tgH~~dD~aEt 124 (433)
T 1ni5_A 81 VQLAQEGLGI-EAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 (433)
T ss_dssp CCCCCSSSTT-TTHHHHHHHHHHHHTCCTTEEEECCCCHHHHHHH
T ss_pred ecCCCCCCCH-HHHHHHHHHHHHHHHHhhCCeEEeeccchHHHHH
Confidence 32 2222 333222221 248899999876544444
No 33
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=91.40 E-value=2.2 Score=28.46 Aligned_cols=129 Identities=10% Similarity=-0.016 Sum_probs=76.0
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCC-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEE-EE
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFG-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVE-II 80 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~-~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (172)
|++|||-+..+-.+....+....+..... ....+|-=.++.........+..+...+.+...+..+.. .|.... -.
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~a~~~e~~~a~~~A~~~l~~sl~aL~~--~G~~a~~G~ 78 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAAAKRALEA--QGIPVEEAK 78 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSCC--CHHHHHHHHHHHHHHHHHHT--TTCCCSEEE
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCCcccccChHHHHHHHHHHHHHHHHHHHH--cCCcccccc
Confidence 47889988876655555555455555443 555444322221111111111222223333333444422 377777 88
Q ss_pred EecCCchHHHHHHHHHHhC--CCEEEEeecCCcchhHhhhhH-HHHhccCCceEEEEe
Q 030760 81 VTEGDQEGARIAALVREIG--ASALVVGLHDRSFLHKLAMSH-NDISSSFNCRVLAIK 135 (172)
Q Consensus 81 ~~~g~~~~~~I~~~a~~~~--~DllVmg~~~~~~~~~~~~gs-~~i~~~~~~PVlvv~ 135 (172)
+.+++|. .++.....+.+ +|-||+.+..+. ..++|--. ..=.++...||+=+-
T Consensus 79 v~d~~Pl-~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~DwasrAr~~gvPVlhl~ 134 (138)
T 2iel_A 79 AGDISPL-LAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVHTQAERFGLPVIHVI 134 (138)
T ss_dssp EEESSHH-HHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHHHHGGGGSSCEEEEE
T ss_pred cCCCChH-HHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHHHHHHhcCCCEEEEe
Confidence 9999997 99999999999 999999999876 44444321 133444889998653
No 34
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=89.13 E-value=0.48 Score=38.70 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHH
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (172)
|+--....+|..|++.+...+.+|.+|++.++....... -..+...+.+.++++.++.....+...+..|++. +.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~----~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~p~-~v 121 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSA----RRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPA-EI 121 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGC----CHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCTT-HH
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCC----CHHHHHHHHHHHHHHHHHHHHcCCceEEEecChH-HH
Confidence 444444567888888887678889999999886211110 0111222333333333322123345567789997 78
Q ss_pred HHHHHHHhCCCEEEE
Q 030760 91 IAALVREIGASALVV 105 (172)
Q Consensus 91 I~~~a~~~~~DllVm 105 (172)
.+.+++.+++.|+.
T Consensus 122 -~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 122 -PALVQRLGASTLVA 135 (506)
T ss_dssp -HHHHHHTTCSEEEE
T ss_pred -HHHHHhcCCCEEEe
Confidence 99999999999997
No 35
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=88.44 E-value=1.6 Score=32.96 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=60.5
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhh-hcCCcEEEEEecCCchHHHHHHHHH
Q 030760 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICND-FFNTNVEIIVTEGDQEGARIAALVR 96 (172)
Q Consensus 18 ~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~I~~~a~ 96 (172)
-++-.|-.+....+++|+++-|.+.+ ...+.+++.+.++.+. .-+.++. ++. .+. ..|++.+
T Consensus 180 LmlllAylL~~nW~A~I~L~~vV~de------------~a~~~a~~~l~~Lv~~~Ri~a~~~--vv~-~~F-~~il~~s- 242 (294)
T 3g40_A 180 LALLIAYKLKSNWKASLSFMTFAPTA------------IQAQAAENFLQSLAELARIPNVKM--QVL-REN-PIKSSKL- 242 (294)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSH------------HHHHHHHHHHHHHHHHHTCCSCEE--EEE-SSC-TTTSSSC-
T ss_pred HHHHHHHHHhhCcCCeEEEEEecCCH------------HHHHHHHHHHHHHHHHhcCCceEE--Eec-Cch-HHHHhhC-
Confidence 33444444444459999999998762 1223333334444443 1134443 223 555 5555554
Q ss_pred HhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 97 EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 97 ~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
-++||+++|-.....++. -..++..+.-.++++++...
T Consensus 243 -~~ADL~flGl~~~~df~~----~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 243 -PFASLHIFSLDPNPDLDL----ARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp -CCCSEEEEECCSSCCHHH----HHHHHHHHTSEEEEEECCSC
T ss_pred -cCCCEEEEcCCCCCcHHH----HHHHHHhcCCeEEEEecCch
Confidence 669999999987766553 12788888889999987643
No 36
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=88.34 E-value=1.7 Score=31.33 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=60.3
Q ss_pred CceEEEEEecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 030760 2 DVKKIVVIVED-----VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTN 76 (172)
Q Consensus 2 ~~k~Ilv~~d~-----s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (172)
+|++|+|-++. .+.+..++..|.+++...|.+++++-+-+.... . ++++. .+ |.+
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~---~---------------~~~~~-~~-Gad 61 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKE---I---------------EKQIL-PY-GVD 61 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTT---T---------------HHHHG-GG-TCS
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHH---H---------------HHHHH-hc-CCC
Confidence 46789998864 477999999999999888889999988754110 0 02222 12 554
Q ss_pred EEEEEec----C---CchHHHHHHHHHHhCCCEEEEeecC
Q 030760 77 VEIIVTE----G---DQEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 77 ~~~~~~~----g---~~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
--+.+-. + ...+..|...++++++|+|++|...
T Consensus 62 ~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 62 KLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp EEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4444432 1 1345788999999999999999754
No 37
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=88.22 E-value=4.9 Score=27.86 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.9
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++++ +++++..+..-+--.+.+.+++++ .+++.+|.+......+.+ -+.-.+.+||+-||....
T Consensus 32 ~~~l~~~-gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg------vvA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 32 VAILQEF-GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG------MLAAKTTVPVLGVPVASK 101 (173)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH------HHHHHCCSCEEEEEECCT
T ss_pred HHHHHHc-CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh------hheecCCCCEEEEEcCCC
Confidence 3334445 888998887633323777777665 688999999988888777 345578999999986543
No 38
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=87.79 E-value=5.5 Score=27.97 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
|.-++++|++.+.-+|..++.++.+. +.+++.+|+....
T Consensus 1 m~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~~ 39 (219)
T 3bl5_A 1 MKKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYNQ 39 (219)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESSC
T ss_pred CCCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCCC
Confidence 66789999999999999998877664 4679999998653
No 39
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=87.59 E-value=4.8 Score=28.45 Aligned_cols=36 Identities=11% Similarity=-0.111 Sum_probs=29.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
.+|+|++.+..+|..++..+.+.. .++.++|+....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~ 80 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGY 80 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCC
Confidence 489999999999999998887764 358889988764
No 40
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=87.50 E-value=0.53 Score=33.77 Aligned_cols=109 Identities=15% Similarity=-0.011 Sum_probs=64.5
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE-
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII- 80 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (172)
.-++|++++.++-.+-++.+.+-.+.+..|.+|+++-......+...... ...+-..
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~~~~----------------------~~~v~~d~ 75 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDI----------------------PVTLYSDA 75 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTGGGGSSCGGGS----------------------CSCEECHH
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEECHhHHHHhCHHHc----------------------CceEEecC
Confidence 45899999999998888888777776525778877754433222222110 0000000
Q ss_pred ----E-ecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhcc--CCceEEEEe
Q 030760 81 ----V-TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISSS--FNCRVLAIK 135 (172)
Q Consensus 81 ----~-~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~~--~~~PVlvv~ 135 (172)
. ..+. ..+.+..-...+|++|+..-.-..+.++-.| ++ .++.. ..+||++++
T Consensus 76 d~~~~~~~~~---~~~~Hi~l~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~~~alk~~~pvvlaP 139 (206)
T 1qzu_A 76 DEWEMWKSRS---DPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCP 139 (206)
T ss_dssp HHHHTCSSTT---SCCHHHHHHTTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEE
T ss_pred cccccccCCC---CccchhhcccccCEEEEecCCHHHHHHHHccccCCHHHHHHHHhcCCCCEEEEe
Confidence 0 0111 1122333344699999999888888888777 22 33333 689999998
No 41
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=87.14 E-value=7.1 Score=28.91 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=53.6
Q ss_pred EecCCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEec---
Q 030760 9 IVEDVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE--- 83 (172)
Q Consensus 9 ~~d~s~~s~~al~~a~~la~~~~~--~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 83 (172)
+.-.++.+..++..|.++....+. +|+++.+-++.. .+. +++... . |.+--+++..
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~~------~~~-----------lr~ala-~-GaD~vi~v~d~~~ 92 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRV------DES-----------LRKCLA-K-GADRAVRVWDDAA 92 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGGG------HHH-----------HHHHHH-T-TCSEEEEECCGGG
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchhH------HHH-----------HHHHHh-c-CCCEEEEEcCccc
Confidence 445678899999999999877676 999998875410 011 122211 1 4444444432
Q ss_pred -CC---chHHHHHHHHHHhCCCEEEEeecCC
Q 030760 84 -GD---QEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 84 -g~---~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
+. ..+..|...+++.++|+|++|....
T Consensus 93 ~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 93 EGSDAIVVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11 2345777788888999999998773
No 42
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=87.03 E-value=0.39 Score=34.16 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=65.1
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.++|++++.++..+-++.+.+-.+.+ .|.+|+++--.... +..... .++.+ .+. + ..-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~--------~fi~~~------~~~~l----~~~-v--~~~ 65 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMTKTAE--------DLIPAH------TVSYF----CDH-V--YSE 65 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEECHHHH--------HHSCHH------HHGGG----SSE-E--ECT
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHH--------HHHHHH------HHHHh----cCC-E--ecc
Confidence 47999999999988888887777755 57888776533221 111100 01111 121 1 111
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhccCCceEEEEeC
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISSSFNCRVLAIKQ 136 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~~~~~PVlvv~~ 136 (172)
..... ..+.+..-...+|++|+..-.-..+.++-.| ++ .++....+|+++++-
T Consensus 66 ~~~~~-~~~~hi~l~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pa 123 (194)
T 1p3y_1 66 HGENG-KRHSHVEIGRWADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPN 123 (194)
T ss_dssp TCSSS-CCCCHHHHHHHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEEC
T ss_pred ccccC-CCcCcccccccCCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEEC
Confidence 11100 0112221123489999999888888888888 32 555568999999974
No 43
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=86.88 E-value=6.1 Score=29.05 Aligned_cols=41 Identities=5% Similarity=-0.190 Sum_probs=33.5
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLN 44 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~ 44 (172)
+.+|+|++.+..+|...+..+.++... +..+.++|+.....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~ 81 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHH 81 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCB
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCC
Confidence 457999999999999999998887654 56788999976644
No 44
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=86.44 E-value=6.5 Score=27.42 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++++ +++++..+..-.--.+.+.+++++ .+++.+|.|..+...+.. -+.-.+..||+-||....
T Consensus 42 ~~~L~~~-gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG------vvAa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 42 CDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG------MVAAKTNLPVIGVPVQSK 111 (181)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH------HHHTTCCSCEEEEECCCT
T ss_pred HHHHHHc-CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh------hHHhcCCCCEEEEecCCC
Confidence 4444455 899999987633323777777764 678999999988887776 455688999999997644
No 45
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=86.28 E-value=4.4 Score=32.15 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=31.4
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
..+++++++.+.-+|..++.++.+. |.+|+.+|+....
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~ 41 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQ 41 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCc
Confidence 3578999999999999999888763 6789999998653
No 46
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=86.28 E-value=3 Score=34.33 Aligned_cols=121 Identities=10% Similarity=-0.030 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHHhhcc--CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchH
Q 030760 11 EDVDAARAALLWALQNLLR--FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEG 88 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~--~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (172)
|+--....+|..|++.+.. .+.+|.+|++.++....... .-......+.+.++++.++.....+...+..|++.
T Consensus 38 DLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~---~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~- 113 (543)
T 2wq7_A 38 GLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ---VGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPA- 113 (543)
T ss_dssp CCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTT---SCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHH-
T ss_pred CcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccC---CCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHH-
Confidence 5555556677788877654 46679999999875432100 00111122222233332221112233445678886
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhH-HHHhccCCceEEEEeC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSH-NDISSSFNCRVLAIKQ 136 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs-~~i~~~~~~PVlvv~~ 136 (172)
+.|.+.+++.+++.|+.-..-. ..+.-.-.. ...+....+++..+..
T Consensus 114 ~~l~~l~~~~~~~~v~~~~~~~-p~~~~rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 114 EVFPRIFKSWRVEMLTFETDIE-PYSVTRDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHHTTEEEEEEECCCS-HHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEecCcC-HHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 9999999999999988875422 222111111 1444555677766543
No 47
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=86.00 E-value=6.3 Score=26.86 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHhhhhcCCcEEEEEec-CCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 66 KDICNDFFNTNVEIIVTE-GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
...++.+ +++++..+.. ... .+.+.+++++...+.+|.+......+.+ -+.-.+++||+-||.
T Consensus 19 ~~~l~~~-gi~~dv~V~saHR~-p~~~~~~~~~a~~~ViIa~AG~aa~Lpg------vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 19 VNILKEF-GVEFEVRVASAHRT-PELVEEIVKNSKADVFIAIAGLAAHLPG------VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHT-TCCEEEEECCTTTC-HHHHHHHHHHCCCSEEEEEEESSCCHHH------HHHTTCSSCEEEEEE
T ss_pred HHHHHHc-CCCeEEEEEcccCC-HHHHHHHHHhcCCCEEEEEcCchhhhHH------HHHhccCCCEEEecC
Confidence 3334444 8889998876 444 3899999997766999999988888777 455678999999997
No 48
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=84.87 E-value=7.6 Score=26.80 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=47.1
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHH---HhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVR---EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~---~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~ 138 (172)
...++.+ +++++..+..-+--.+.+.++++ +.+++.+|.+......+.. -+.-.+++||+-||...
T Consensus 26 ~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~ 94 (169)
T 3trh_A 26 FTELKSL-GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG------TIAAHTLKPVIGVPMAG 94 (169)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH------HHHHTCSSCEEEEECCC
T ss_pred HHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH------HHHhcCCCCEEEeecCC
Confidence 3334445 88899888763322366666654 5788999999888888777 45567899999999764
No 49
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=84.84 E-value=8.2 Score=27.12 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=30.4
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
|.+++|+|++.+..+|..++.++.+ .|..+.++|+....
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 6788999999999999988866543 46789999998664
No 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=83.55 E-value=12 Score=28.16 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=78.1
Q ss_pred EEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecC
Q 030760 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (172)
Q Consensus 5 ~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (172)
+|||++.........++++..+....| -++++++.+..... .+.++ .+.+++...+. ++..-+.++..
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~~G-~ltv~~i~p~~~~~------~l~~q----l~~l~~~l~~r-~v~a~~~vi~a 89 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYPKG-SVKLLGLAGNTDKE------NLLSQ----LPSISEGFQEE-GVFSSWTIIDT 89 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTTC-EEEEEECC---CTT------CHHHH----HHHHHHHHHHT-TCEEEEEEC--
T ss_pred cEEEecCCchhhhhHHHHHHHhccCce-eEEEEEEccCCCcc------HHHHH----HHHHHHHHHhC-CceeEEEEEec
Confidence 699999887788999999999998655 69999997554211 10111 13334444443 78888887765
Q ss_pred CchHHHHHHHHHHhC-----CCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 85 DQEGARIAALVREIG-----ASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 85 ~~~~~~I~~~a~~~~-----~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
....+++...++.++ +..|++|......-..-+.-.-.-+++...-|++++..+.
T Consensus 90 ~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~~~~nVlil~~~~~ 149 (294)
T 3g40_A 90 AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMYRMGVLLFSKHPQ 149 (294)
T ss_dssp ---CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHHhCceEEEEecCCc
Confidence 544599999888865 5688898876553222121112566677999999986443
No 51
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=83.46 E-value=9.1 Score=26.55 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+..-+--.+.+.+++++ .+++.+|.+......+.. -+.-.+.+||+-||....
T Consensus 32 ~~~L~~~-Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 101 (174)
T 3kuu_A 32 ADVLTTL-NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG------MLAAKTLVPVLGVPVQSA 101 (174)
T ss_dssp HHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH------HHHHTCSSCEEEEEECCT
T ss_pred HHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH------HHHhccCCCEEEeeCCCC
Confidence 3334444 888998887633223778888764 678999999988888777 455678999999987643
No 52
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=81.86 E-value=12 Score=30.42 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=30.2
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
+++++++.+..+|..++..+.+. |.+++++|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 68999999999999998877665 789999999765
No 53
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=81.58 E-value=11 Score=26.15 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHH---HHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAAL---VREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~---a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+..-+--.+.+.++ +++.+++.+|.+......+.. -+.-.+++||+-||....
T Consensus 27 ~~~L~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 27 AAALAEF-DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG------MVAAATPLPVIGVPVPLG 96 (174)
T ss_dssp HHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH------HHHHHCSSCEEEEEECCS
T ss_pred HHHHHHc-CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH------HHHhccCCCEEEeeCCCC
Confidence 3334444 888888887632222666666 456789999999988888877 445578999999986643
No 54
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=80.79 E-value=6.7 Score=32.07 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchH---HHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCch
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRK---KLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQE 87 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (172)
|+--....+|..|++ .+..|.+|++.++....... ....-......+.+.++++.++.....+...+..|++.
T Consensus 49 DLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~ 124 (525)
T 2j4d_A 49 DLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPE 124 (525)
T ss_dssp CCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred CcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 443334455555554 34579999999874321100 00000111112222223322221112233445678996
Q ss_pred HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH-HHhccCC--ceEEEEeC
Q 030760 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHN-DISSSFN--CRVLAIKQ 136 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~--~PVlvv~~ 136 (172)
+.|.+.+++.+++.|+.-..-... ..-.-... ..+.... |++..+..
T Consensus 125 -~~l~~l~~~~~~~~V~~~~~~~p~-~~~rd~~v~~~l~~~gv~i~~~~~~~ 174 (525)
T 2j4d_A 125 -EILPSLAKDFGARTVFAHKETCSE-EVDVERLVNQGLKRVGNSTKLELIWG 174 (525)
T ss_dssp -HHHHHHHHHHTCSEEEEECCCSHH-HHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred -HHHHHHHHHcCCCEEEEeccCCHH-HHHHHHHHHHHHHhcCCceEEEEecC
Confidence 999999999999999887544332 22111111 4444555 77776653
No 55
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=80.69 E-value=5.7 Score=32.10 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=63.4
Q ss_pred EEEEEe--cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch--HHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 5 KIVVIV--EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR--KKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 5 ~Ilv~~--d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
..|+=+ |+--....+|..|++ .+.++..|++.++...... .....-......+.+.++++.++.....+...
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 82 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 344444 554444556666654 3458889999887432100 00000011111222222333222112223445
Q ss_pred EecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH-HHhccCCceEEEEeC
Q 030760 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN-DISSSFNCRVLAIKQ 136 (172)
Q Consensus 81 ~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~~PVlvv~~ 136 (172)
+..|++. +.|.+.+++.+++.|+.-..-... ..-.-... ..+....+++..+..
T Consensus 83 v~~g~~~-~~l~~l~~~~~~~~V~~~~~~~~~-~~~rd~~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 83 VTTGLPE-QVIPQIAKQINAKTIYYHREVTQE-ELDVERNLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp EEESCHH-HHHHHHHHHTTEEEEEEECCCSHH-HHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEECCHH-HHHHHHHHHcCCCEEEEecccCHH-HHHHHHHHHHHHHhcCCeEEEecC
Confidence 5678996 999999999999988887544322 21111111 444455677766643
No 56
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=80.66 E-value=12 Score=25.89 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHhhhhcCCcEEEEEec-CCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTE-GDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+.. -... +.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||....
T Consensus 31 ~~~L~~~-Gi~~dv~V~SaHR~p-~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 31 CDILDEL-NIPYEKKVVSAHRTP-DYMFEYAETARERGLKVIIAGAGGAAHLPG------MVAAKTNLPVIGVPVQSK 100 (170)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSH-HHHHHHHHHTTTTTCCEEEEEEESSCCHHH------HHHTTCCSCEEEEEECCT
T ss_pred HHHHHHc-CCCEEEEEEeccCCH-HHHHHHHHHHHhCCCcEEEEECCchhhhHH------HHHhccCCCEEEeeCCCC
Confidence 3334444 8889988875 3443 788888775 458999999888888777 456678999999997643
No 57
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=80.58 E-value=2.2 Score=35.08 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch------HHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecC
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR------KKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (172)
|+--....+|..|++ .+.+|..|+|.++...... .....-..+...+.+.++++..+.........+..|
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G 89 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKG 89 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCCCEEEES
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 554444455555553 4678999999976321100 000000111122222233332221122344556678
Q ss_pred CchHHHHHHHHHHhCCCEEEEeec
Q 030760 85 DQEGARIAALVREIGASALVVGLH 108 (172)
Q Consensus 85 ~~~~~~I~~~a~~~~~DllVmg~~ 108 (172)
++. +.|.+.+++.+++.|+.-..
T Consensus 90 ~~~-~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 90 EPG-EVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp CHH-HHHHHHHTTSCEEEEEECCC
T ss_pred CHH-HHHHHHHHHcCCCEEEEecc
Confidence 886 99999999999999888654
No 58
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=80.37 E-value=11 Score=25.65 Aligned_cols=66 Identities=9% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---h-CCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---I-GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~-~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~ 138 (172)
...++.+ +++++..+..-+--.+.+.+++++ . +++.+|.+......+.. -+.-.+.+||+-||...
T Consensus 22 ~~~l~~~-gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~ 91 (159)
T 3rg8_A 22 ASELKTF-GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG------FVDGFVKGATIACPPPS 91 (159)
T ss_dssp HHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH------HHHHHSSSCEEECCCCC
T ss_pred HHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH------HHHhccCCCEEEeeCCC
Confidence 3334445 888998887633223778787754 2 58999999988888877 34557899999998653
No 59
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=80.27 E-value=11 Score=28.52 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=56.0
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhcc------------------CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHH
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLR------------------FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSF 65 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~------------------~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (172)
.+|+|++.+..+|...+..+.+.... .+..+.++|+.....+ ++..+. +
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f--pet~~f-----------v 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF--PTLENF-----------V 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--HHHHHH-----------H
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--HHHHHH-----------H
Confidence 47999999999999999988776321 1456889999865432 111111 1
Q ss_pred HHHhhhhcCCcEEEEEec---CCchHHHHHHHHHH-hCCCEEEEeecCCc
Q 030760 66 KDICNDFFNTNVEIIVTE---GDQEGARIAALVRE-IGASALVVGLHDRS 111 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~---g~~~~~~I~~~a~~-~~~DllVmg~~~~~ 111 (172)
++.++++ ++++...... +....+++.++++. -..+.+++|.+..-
T Consensus 121 ~~~~~~y-gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 121 LETSERY-CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHHHHHT-TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHHHHHc-CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 2333333 4444322211 12223677777766 36789999987743
No 60
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=80.22 E-value=20 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.9
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
-.++++++.+..+|..++.++.+ .|.+++++|+...
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~~ 222 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSP 222 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECT
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 46899999999999988887765 3789999999853
No 61
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=80.15 E-value=12 Score=25.68 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=47.8
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+..-+--.+.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||....
T Consensus 23 ~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 23 CNMLDYF-EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG------MVASLTTLPVIGVPIETK 92 (163)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH------HHHHHCSSCEEEEEECCT
T ss_pred HHHHHHc-CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH------HHHhccCCCEEEeeCCCC
Confidence 3344445 888998887633223777777764 568999999988888777 345578999999986643
No 62
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=80.06 E-value=13 Score=25.99 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=48.3
Q ss_pred HHHhhhhcCCcEEEEEec-CCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTE-GDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+.. .... +.+.+++++ .+++.+|.+......+.. -+.-.+++||+-|+....
T Consensus 41 ~~~L~~~-Gi~~dv~V~SaHR~p-~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 41 DALLTEL-EIPHETLIVSAHRTP-DRLADYARTAAERGLNVIIAGAGGAAHLPG------MCAAWTRLPVLGVPVESR 110 (182)
T ss_dssp HHHHHHT-TCCEEEEECCTTTCH-HHHHHHHHHTTTTTCCEEEEEEESSCCHHH------HHHHHCSSCEEEEEECCT
T ss_pred HHHHHHc-CCCeEEEEEcccCCH-HHHHHHHHHHHhCCCcEEEEecCchhhhHH------HHHhccCCCEEEeeCCCC
Confidence 3333444 8889988875 3443 888888775 458999999988888777 445678999999997643
No 63
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=79.70 E-value=16 Score=26.87 Aligned_cols=80 Identities=13% Similarity=0.000 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe-c----
Q 030760 11 EDVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT-E---- 83 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~--~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 83 (172)
-.++.+..+++.|.++... |. +|+++.+-++.. .+. +++... . |.+--+++. .
T Consensus 37 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a------~~~-----------lr~ala-~-GaD~vi~v~~d~~~~ 96 (255)
T 1efv_B 37 SMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQC------QET-----------IRTALA-M-GADRGIHVEVPPAEA 96 (255)
T ss_dssp EECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTTH------HHH-----------HHHHHH-H-TCSEEEEEECCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH------HHH-----------HHHHHh-c-CCCEEEEEecChhhc
Confidence 3468889999999999876 65 999999886420 011 111111 1 444444443 1
Q ss_pred -CC---chHHHHHHHHHHhCCCEEEEeecCC
Q 030760 84 -GD---QEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 84 -g~---~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
+. ..+..|...+++.++|+|++|....
T Consensus 97 ~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~ 127 (255)
T 1efv_B 97 ERLGPLQVARVLAKLAEKEKVDLVLLGKQAI 127 (255)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCSEEEEESCCT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 21 2345777788888999999998774
No 64
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=79.53 E-value=13 Score=25.91 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHhhhhcCCcEEEEEec-CCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTE-GDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ +++++..+.. -... +.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||....
T Consensus 33 ~~~L~~~-Gi~~dv~V~SaHR~p-~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 33 AEILEEF-GIDYEITIVSAHRTP-DRMFEYAKNAEERGIEVIIAGAGGAAHLPG------MVASITHLPVIGVPVKTS 102 (183)
T ss_dssp HHHHHHT-TCEEEEEECCTTTCH-HHHHHHHHHTTTTTCCEEEEEEESSCCHHH------HHHHHCSSCEEEEEECCT
T ss_pred HHHHHHc-CCCeEEEEEcccCCH-HHHHHHHHHHHhCCCcEEEEecCcccccHH------HHHhccCCCEEEeeCCCC
Confidence 3334444 8889988875 3343 777777764 568999999988888777 345568999999997653
No 65
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=78.77 E-value=21 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=29.8
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
.++|+|++.+..+|..++..+.+. |-+|+.+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ----GYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc----CCcEEEEEEECC
Confidence 468999999999999888776653 778999999755
No 66
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=78.08 E-value=18 Score=29.15 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc----chHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCc
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (172)
|+--....+|..|.+. ..+|.+|++.++.... .......+-+...++.+.++ +. |.. ..+..|++
T Consensus 12 DLRl~Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~----~~-G~~--L~v~~g~~ 80 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQ----QA-GSR--LLLLQGDP 80 (484)
T ss_dssp CCCSSSCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHH----HH-TSC--EEEEESCH
T ss_pred CCCcchhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHH----HC-CCe--EEEEeCCH
Confidence 4433334455666553 2368999998763211 11111122222222222222 22 444 44567999
Q ss_pred hHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH-HHhccCCceEEEEe
Q 030760 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHN-DISSSFNCRVLAIK 135 (172)
Q Consensus 87 ~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~~PVlvv~ 135 (172)
. +.|.+.+++.+++.|+.-..-... ..-.-... ..+....+++..+.
T Consensus 81 ~-~~l~~l~~~~~~~~v~~~~~~~p~-~~~rd~~v~~~l~~~gi~~~~~~ 128 (484)
T 1owl_A 81 Q-HLIPQLAQQLQAEAVYWNQDIEPY-GRDRDGQVAAALKTAGIRAVQLW 128 (484)
T ss_dssp H-HHHHHHHHHTTCSEEEEECCCSHH-HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred H-HHHHHHHHHcCCCEEEEeccCChh-HHHHHHHHHHHHHHcCcEEEEec
Confidence 6 999999999999999886543322 21111111 44555678887775
No 67
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=77.94 E-value=14 Score=25.35 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=48.6
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHH---hCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCCCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~~~ 139 (172)
...++.+ ++.++..+..-.--.+.+.+++++ .+++.+|.+......+.. -+.-.+.+||+-||....
T Consensus 25 ~~~l~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg------vvA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 25 CDILDNL-GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG------MVAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp HHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH------HHHHTCSSCEEEEECCCT
T ss_pred HHHHHHc-CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH------HHHhccCCCEEEeecCcC
Confidence 3334444 888998887633223788888765 468999999988888877 455678999999997543
No 68
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=77.86 E-value=15 Score=28.85 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=30.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
+++++++.+..+|..++.++.+. ++..++++|+....
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g~ 37 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIGQ 37 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESSC
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCCC
Confidence 58999999999999999988654 36789999998664
No 69
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=77.55 E-value=3.5 Score=32.68 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHH
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (172)
|+--....+|..|.+ .+ +|..|++.++..... -......+.+.++++.++.....+...+..|++. +.
T Consensus 11 DlRl~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~------~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~-~~ 78 (420)
T 2j07_A 11 DLRLHDHPALLEALA----RG-PVVGLVVLDPNNLKT------TPRRRAWFLENVRALREAYRARGGALWVLEGLPW-EK 78 (420)
T ss_dssp CCCSTTCHHHHHHHT----TS-CEEEEEEECHHHHSS------CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HH
T ss_pred CCCccccHHHHHHHh----CC-CEEEEEEECCccccC------CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHH-HH
Confidence 443333445555554 23 799999987632110 1112222333333333331122334455679996 99
Q ss_pred HHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
|.+.+++.+++.|+.-..-... ..-. ...|...++|++..+..
T Consensus 79 l~~l~~~~~~~~v~~~~~~~~~-~~~r--d~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 79 VPEAARRLKAKAVYALTSHTPY-GRYR--DGRVREALPVPLHLLPA 121 (420)
T ss_dssp HHHHHHHTTCSEEEEECCCSHH-HHHH--HHHHHHHCSSCEEEECC
T ss_pred HHHHHHHcCCCEEEEecccChh-HHHH--HHHHHHHcCCeEEEeCC
Confidence 9999999999999886543322 1111 11333333777777653
No 70
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=76.93 E-value=17 Score=25.79 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=30.1
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
+++++|++.+.-+|..++.++.+. +.+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 579999999999999998888764 358999998765
No 71
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=76.87 E-value=27 Score=28.03 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.3
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
.++|+|++.+.-+|..++.|+.+. |..|+.+|+...
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 578999999999999999998763 789999999765
No 72
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=76.09 E-value=11 Score=30.15 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHHHHH
Q 030760 17 RAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVR 96 (172)
Q Consensus 17 ~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~ 96 (172)
..+|..|++ .+.+|.+|++.++....... ..-......+.+.++++.++.....+...+..|++. +.|.+.++
T Consensus 16 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~--~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~-~~l~~l~~ 88 (440)
T 2e0i_A 16 NTGLNYALS----ECDRVIPVFIADPRQLINNP--YKSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAE-KVVSRFFN 88 (440)
T ss_dssp CHHHHHHHH----HSSEEEEEEEECHHHHSSCT--TCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHH-HHHHHHCT
T ss_pred hHHHHHHHh----cCCCEEEEEEeChhhhccCC--cCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHH-HHHHHHHc
Confidence 445555655 35689999999863211000 000111222233333333332223344455678886 89999888
Q ss_pred HhCCCEEEEeecCCcchhHhhhhHH-HHhccCCceEEEEeC
Q 030760 97 EIGASALVVGLHDRSFLHKLAMSHN-DISSSFNCRVLAIKQ 136 (172)
Q Consensus 97 ~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~~PVlvv~~ 136 (172)
+++.|+.-..-... ..-.-... ..+...++++..+..
T Consensus 89 --~~~~v~~~~~~~~~-~~~rd~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 89 --KVDAIYVNEDYTPF-SISRDEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp --TCSEEEEECCCSHH-HHHHHHHHHHHHHTTTCEEEEECC
T ss_pred --CCCEEEEecccChH-HHHHHHHHHHHHHHcCceEEEecC
Confidence 89998876443322 21111111 455566788877754
No 73
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=74.46 E-value=25 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
++++|++.+..+|..++..+.+. .|.+++++|+....
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~ 57 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGF 57 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCC
Confidence 58999999999999888877665 25679999998653
No 74
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=74.17 E-value=23 Score=25.91 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=51.8
Q ss_pred ecCCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe-c---
Q 030760 10 VEDVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT-E--- 83 (172)
Q Consensus 10 ~d~s~~s~~al~~a~~la~~~~~--~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 83 (172)
.-.++.+..+++.|.++... |. +|+++.+-++.. .+. +++... . |.+--+++. .
T Consensus 33 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a------~~~-----------lr~ala-~-GaD~vi~v~~d~~~ 92 (252)
T 1efp_B 33 MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQA------AET-----------LRTALA-M-GADRAILVVAADDV 92 (252)
T ss_dssp EEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGGG------HHH-----------HHHHHH-H-TCSEEEEEECCSST
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH------HHH-----------HHHHHh-c-CCCEEEEEecChhh
Confidence 34568899999999999876 65 999998885411 011 111111 1 444444443 2
Q ss_pred --CC---chHHHHHHHHHHhCCCEEEEeecCC
Q 030760 84 --GD---QEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 84 --g~---~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
+. ..+..|...+++.++|+|++|....
T Consensus 93 ~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 124 (252)
T 1efp_B 93 QQDIEPLAVAKILAAVARAEGTELIIAGKQAI 124 (252)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTCSEEEEESCCT
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 21 2345777788888999999998774
No 75
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=72.64 E-value=12 Score=30.06 Aligned_cols=85 Identities=9% Similarity=-0.043 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhh--cCCcEEEEEe--cCCchHHHHHH
Q 030760 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDF--FNTNVEIIVT--EGDQEGARIAA 93 (172)
Q Consensus 18 ~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~g~~~~~~I~~ 93 (172)
.+|..|++. ..+ +|.+|++.++...... ..-......+.+.++++.++. .|..+.+... .|++. +.|.+
T Consensus 17 ~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~---~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~-~~l~~ 89 (471)
T 1dnp_A 17 LALAAACRN--SSA-RVLALYIATPRQWATH---NMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASV-EIVKQ 89 (471)
T ss_dssp HHHHHHSSS--TTS-EEEEEEEECHHHHHHT---TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHH-HHHHH
T ss_pred HHHHHHHhC--CCC-CEEEEEEECchhhccC---CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHH-HHHHH
Confidence 445545432 134 8999999987321000 000111222233333333321 1555544332 68886 99999
Q ss_pred HHHHhCCCEEEEeecC
Q 030760 94 LVREIGASALVVGLHD 109 (172)
Q Consensus 94 ~a~~~~~DllVmg~~~ 109 (172)
.+++.+++.|+.-..-
T Consensus 90 l~~~~~~~~v~~~~~~ 105 (471)
T 1dnp_A 90 VCAENSVTHLFYNYQY 105 (471)
T ss_dssp HHHHHTCCEEEEECCC
T ss_pred HHHHcCCCEEEEeccc
Confidence 9999999998886543
No 76
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=72.08 E-value=5.4 Score=32.63 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=30.2
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
+++++++.+.-+|..++..+.+. .|.+++++|+....
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~ 267 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGL 267 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCC
Confidence 68999999999999988877664 35679999997653
No 77
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=70.77 E-value=6.5 Score=32.32 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCC---cEEEEEecCCchHHHHHH
Q 030760 17 RAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNT---NVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 17 ~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~I~~ 93 (172)
..+|..|++.+. .+.+|..|+|.++........ -..+...+.+.+.++..+.... .....+..|++. +.|.+
T Consensus 19 N~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~---~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~~~-~vl~~ 93 (538)
T 3tvs_A 19 NPALLAALADKD-QGIALIPVFIFDGESAGTKNV---GYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPA-YIFRR 93 (538)
T ss_dssp CHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTC---CHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESCHH-HHHHH
T ss_pred hHHHHHHHHhCC-CCCCEEEEEecChhhhccCCC---CHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCHH-HHHHH
Confidence 445555555443 445899999998754321110 0111223333334443332233 455667789996 99999
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
.+++.+++.|+.-.
T Consensus 94 L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 94 LHEQVRLHRICIEQ 107 (538)
T ss_dssp HHHHHCEEEECEEC
T ss_pred HHHHcCCCEEEEcc
Confidence 99999999998644
No 78
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=70.44 E-value=18 Score=27.30 Aligned_cols=85 Identities=18% Similarity=0.318 Sum_probs=49.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhh-cCCcEEEEEe
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDF-FNTNVEIIVT 82 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (172)
.++++.+.+ -+|..++..+. +.|..++.+|..... . ..+ ...+..+.+. .+ ....+..+++
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~----~~G~~v~~v~~~~~~-----~---~~~----~a~~~a~~l~-~~~~~~~i~~~vv 241 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMM----KRGVEVIPVYIGKDD-----K---NLE----KVRSLWNLLK-RYSYGSKGFLVVA 241 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHH----HBTCEEEEEEESCSS-----H---HHH----HHHHHHHHHH-TTCTTSCCCCEEE
T ss_pred CcEEEEEeC-CcHHHHHHHHH----hCCCeEEEEEEEECH-----H---HHH----HHHHHHHHHh-hhccCCCCcEEEe
Confidence 589999999 88877655444 358899999998221 1 111 1111111111 10 1223444444
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecC
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
.. . ..+.++|++.++|.|+.|.+.
T Consensus 242 ~~--~-~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 242 ES--F-DRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp SS--H-HHHHHHHHHHTCCEEECCCCG
T ss_pred CC--C-HHHHHHHHHcCCCEEEECccc
Confidence 31 2 334499999999999999864
No 79
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=67.57 E-value=8.6 Score=26.96 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=63.6
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEec
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
++|++++.++..+-++.+.+-.+.+. |.+++++--... ......... ..+..+.... + .-.+.. .
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~~A--------~~~i~~e~~---~~~~~l~~~l-~-~~~v~~-~ 66 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVISRNA--------KVVLKEEHS---LTFEEVLKGL-K-NVRIHE-E 66 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEECHHH--------HHHHHHC----------CCCCC-S-SEEEEE-T
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEChhH--------HHHhhHHhC---CCHHHHHHHh-C-CCeEec-C
Confidence 89999999998888888888777665 788877653322 111111000 0001110101 1 111111 2
Q ss_pred CCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH----HHhc---cCCceEEEEeC
Q 030760 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN----DISS---SFNCRVLAIKQ 136 (172)
Q Consensus 84 g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~----~i~~---~~~~PVlvv~~ 136 (172)
++.. .-|..-.-...+|++|+..-.-..+.++-.| ++ .... +..+|+++++-
T Consensus 67 ~~~~-~hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~Pa 126 (189)
T 2ejb_A 67 NDFT-SPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLLVR 126 (189)
T ss_dssp TCTT-SGGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCc-CCccccccccccCEEEEecCCHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEEEC
Confidence 2221 2221111125689999998888888887777 32 2222 23899999985
No 80
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=66.51 E-value=17 Score=22.44 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEeecC-----CcchhHhh--hhHHHHhccCCceEEEEeC
Q 030760 88 GARIAALVREIGASALVVGLHD-----RSFLHKLA--MSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~~-----~~~~~~~~--~gs~~i~~~~~~PVlvv~~ 136 (172)
.+.|.+++++++++.||+|--. .+...+.. | ...+-.. ++||..+-+
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f-~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPL-VEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHH-HHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHH-HHHHhcC-CCCEEEECC
Confidence 4889999999999999999321 22111101 1 1244444 899988763
No 81
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=61.71 E-value=43 Score=24.23 Aligned_cols=36 Identities=11% Similarity=-0.111 Sum_probs=28.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
.+|+|++.+..+|...+..+.+.. ..+.++|+....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg~ 81 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGY 81 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCSC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 479999999999999998887765 357788887654
No 82
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=60.86 E-value=13 Score=26.56 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=67.2
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
..|+|++++.++..+-++++.+-.+.+. |.+|+++-......+..+.....+.....+..+.+.+..... .....++-
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~T~~A~~fi~~et~~~ls~~~v~~~~~~~~~~~~~-~~~~~~~~ 80 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAA-AGQIRVFG 80 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHCSCCCCSSHHHHHHHHHHHHTCC-TTTEEECC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEECccHHHHHHHHhCCcccCCccchhhhhhhhhhcc-cccceecc
Confidence 4589999999999999988887777664 888887765433111100000000000000000111111110 11111111
Q ss_pred ecCCchHHHHHHHHH-HhCCCEEEEeecCCcchhHhhhh-HH-------HHhccCCceEEEEeC
Q 030760 82 TEGDQEGARIAALVR-EIGASALVVGLHDRSFLHKLAMS-HN-------DISSSFNCRVLAIKQ 136 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~-~~~~DllVmg~~~~~~~~~~~~g-s~-------~i~~~~~~PVlvv~~ 136 (172)
.++.. . +.+- ...+|++|+..-.-..+.++-.| ++ .+.-+..+|+++++-
T Consensus 81 -~~d~~-~---hI~~~~~~aD~mvIaPaSanTlakiA~GiaDnLltraadv~Lk~~~plvl~Pa 139 (209)
T 3zqu_A 81 -QNDWM-A---PPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPR 139 (209)
T ss_dssp -TTCTT-S---GGGCTTSCCCEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCCEEEEEC
T ss_pred -ccccc-C---CccccCcccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCcEEEEEc
Confidence 12211 1 1211 23489999998888888887777 33 244456899999986
No 83
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=58.98 E-value=54 Score=25.64 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~ 41 (172)
|++||||| +...+.+.. .++-+++.|-++++++...
T Consensus 4 m~~~kiLI-~g~g~~a~~----i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 4 MEIKSILI-ANRGEIALR----ALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp TCCCEEEE-CCCHHHHHH----HHHHHHHTTCEEEEEEEGG
T ss_pred cccceEEE-ECCCHHHHH----HHHHHHHcCCEEEEEEcCc
Confidence 78999999 444443333 3344455687777776543
No 84
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=57.53 E-value=23 Score=23.39 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCEEEEeec-----CCcchhHhhhh-HHHHhccCCceEEEEeCC
Q 030760 88 GARIAALVREIGASALVVGLH-----DRSFLHKLAMS-HNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~-----~~~~~~~~~~g-s~~i~~~~~~PVlvv~~~ 137 (172)
.+.|.+++++++++.||+|-- ..+......-. ...+-...++||..+-+.
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 499999999999999999932 22221111100 124444458999998643
No 85
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=56.70 E-value=32 Score=21.21 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=50.3
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHHHHHH
Q 030760 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVRE 97 (172)
Q Consensus 18 ~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~ 97 (172)
..+....++.+..|-.+.-+ -.+ +++....+++.+++ +..+...++.....++.-+.+++.
T Consensus 13 etlrkfkdiikkngfkvrtv--rsp----------------qelkdsieelvkky-nativvvvvddkewaekairfvks 73 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTV--RSP----------------QELKDSIEELVKKY-NATIVVVVVDDKEWAEKAIRFVKS 73 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--CSH----------------HHHHHHHHHHTTCC-CCEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEe--cCH----------------HHHHHHHHHHHHHh-CCeEEEEEEccHHHHHHHHHHHHh
Confidence 34566677777778766543 111 22333446666665 666777777888888999999999
Q ss_pred hCCCEEEEeecCC
Q 030760 98 IGASALVVGLHDR 110 (172)
Q Consensus 98 ~~~DllVmg~~~~ 110 (172)
.++..+++-....
T Consensus 74 lgaqvliiiydqd 86 (134)
T 2l69_A 74 LGAQVLIIIYDQD 86 (134)
T ss_dssp HCCCCEEEEECSC
T ss_pred cCCeEEEEEEeCc
Confidence 9999888876654
No 86
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=56.38 E-value=55 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=29.5
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
-++++|++.+.-+|..++.|+.+. |..|+.+++...
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~----G~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK----GFDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC----CCeEEEEEEEcC
Confidence 367999999999999988887543 778999998765
No 87
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=55.82 E-value=56 Score=23.69 Aligned_cols=96 Identities=8% Similarity=-0.050 Sum_probs=57.4
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
++|..++++.|++ ..++....+.-...++.|.++...+.. +....+.+.+++++...+.++++...
T Consensus 7 ~~~~~~~tlGFd~--~~~vral~~~g~~~~d~ViLv~~~~~~------------~~~~~A~~~i~~~l~~~~~i~~e~~~ 72 (244)
T 2wte_A 7 HMKSYFVTMGFNE--TFLLRLLNETSAQKEDSLVIVVPSPIV------------SGTRAAIESLRAQISRLNYPPPRIYE 72 (244)
T ss_dssp -CCEEEECCCSCC--HHHHHHHHHTTCCTTSEEEEEEESSCC------------HHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred hhhhheeccCcCh--HHHHHHHHHhCCCCCCEEEEEeCCCcc------------hhHHHHHHHHHHHHHHcCCCceEEEE
Confidence 4678889999987 556666666666667889988865542 12344455556677665456888777
Q ss_pred ecCCchHHHHHHHHHH---hCCCEEEEeecCCc
Q 030760 82 TEGDQEGARIAALVRE---IGASALVVGLHDRS 111 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~~---~~~DllVmg~~~~~ 111 (172)
++-.+..+.+....+. ..-+++|--+.|..
T Consensus 73 vd~~df~~~v~~i~~~i~~~~~~iivnlsGG~R 105 (244)
T 2wte_A 73 IEITDFNLALSKILDIILTLPEPIISDLTMGMR 105 (244)
T ss_dssp ECCCSHHHHHHHHHHHHTTSCSSEEEECSSSCH
T ss_pred ECCccHHHHHHHHHHHHhhcCCcEEEEecCCch
Confidence 7765553443333332 22266664444443
No 88
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=55.39 E-value=25 Score=27.02 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+-- ... ..-..+.+++..+++|+++++...++.-. -.++.
T Consensus 154 ~~~eRiar~AFe~A~~rrkkVt~v~KaNvl---k~s--------~glf~~~~~eva~eyp~i~~~~~~vD~~~--mqlv~ 220 (337)
T 1w0d_A 154 FGVRRVVADAFERARRRRKHLTLVHKTNVL---TFA--------GGLWLRTVDEVGECYPDVEVAYQHVDAAT--IHMIT 220 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTTTS---HHH--------HHHHHHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCccc---hhh--------hHHHHHHHHHHHHHCCceEEEEEEHHHHH--HHHhh
Confidence 568889999999998777788888854331 111 11122234555667888888877754322 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 221 ~--P~~FDVivt~N 232 (337)
T 1w0d_A 221 D--PGRFDVIVTDN 232 (337)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccccEEEECc
Confidence 2 34578777653
No 89
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.31 E-value=44 Score=22.41 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccC---CceEEEE
Q 030760 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF---NCRVLAI 134 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~---~~PVlvv 134 (172)
.+.+++.+++.++|+|.+.......... +..--..++.. ++||++=
T Consensus 58 ~e~lv~aa~~~~~diV~lS~~~~~~~~~-~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 58 PEQVAMAAVQEDVDVIGVSILNGAHLHL-MKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSCHHHH-HHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEeechhhHHH-HHHHHHHHHhcCCCCCEEEEe
Confidence 4999999999999999999886654443 21111334333 3777775
No 90
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=54.73 E-value=73 Score=24.73 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=56.7
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
-++|+|++.+..+|..++..+.+ .|-+|+.+|+........... . ......+.++.+++.. +++....-.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~---~--~s~~d~~~a~~va~~L-GIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDDGEEY---C--TAAADLADAQAVCDKL-GIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCSHHHH---H--HHHHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccccccCC---C--CCHHHHHHHHHHHHHc-CCcEEEEeC
Confidence 46899999999988888776654 378899999975432110000 0 0011123345555544 555544432
Q ss_pred c-----------------CC---c--------hHHHHHHHHHH-hCCCEEEEeecC
Q 030760 83 E-----------------GD---Q--------EGARIAALVRE-IGASALVVGLHD 109 (172)
Q Consensus 83 ~-----------------g~---~--------~~~~I~~~a~~-~~~DllVmg~~~ 109 (172)
. |. + ....+.++|++ .++|.|+.|.+.
T Consensus 87 ~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 87 AAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred cHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 1 11 0 01456778888 999999998643
No 91
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=53.64 E-value=88 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHHHHHH-HHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 89 ARIAALV-REIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a-~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+.+.+ ++.++|.||+-.+.-+.-..++ .+++..++|||+....
T Consensus 61 ~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i----~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWI----NGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHCTTEEEEEEECCSCCCTHHHH----HHHHHCCSCEEEEECC
T ss_pred HHHHHHhccccCCcEEEEeCCcCccHHHHH----HHHHhcCCCEEEEeCC
Confidence 4445555 4558999999888777644433 5667789999999744
No 92
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=52.89 E-value=55 Score=22.77 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccC----CceEEEE
Q 030760 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF----NCRVLAI 134 (172)
Q Consensus 84 g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~----~~PVlvv 134 (172)
..+ .+.+++.+++.++|+|.+.......... +...-..++.. ++||++-
T Consensus 125 ~vp-~~~l~~~~~~~~~d~v~lS~~~~~~~~~-~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 125 DIE-PGKFVEAVKKYQPDIVGMSALLTTTMMN-MKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp SBC-HHHHHHHHHHHCCSEEEEECCSGGGTHH-HHHHHHHHHHTTCGGGCEEEEE
T ss_pred CCC-HHHHHHHHHHcCCCEEEEeccccccHHH-HHHHHHHHHhcCCCCCCeEEEE
Confidence 345 4999999999999999999875544332 11111334332 3888875
No 93
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=52.50 E-value=69 Score=25.47 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred HhhhhcCCcEEEEEec-CCchHHHHHHHHH---HhCC-CEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 68 ICNDFFNTNVEIIVTE-GDQEGARIAALVR---EIGA-SALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 68 ~~~~~~~~~~~~~~~~-g~~~~~~I~~~a~---~~~~-DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.++.+ +++++..+.. .... +.+.++++ +.++ +.+|.++.....+.+ -+.-.+++||+-||..
T Consensus 287 ~l~~~-gi~~~v~V~saHR~p-~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg------vva~~t~~PVIgvP~~ 353 (425)
T 2h31_A 287 ACGNF-GIPCELRVTSAHKGP-DETLRIKAEYEGDGIPTVFVAVAGRSNGLGP------VMSGNTAYPVISCPPL 353 (425)
T ss_dssp HHHHT-TCCEEEEECCTTTCH-HHHHHHHHHHHTTCCCEEEEEECCSSCCHHH------HHHHHCSSCEEECCCC
T ss_pred HHHHc-CCceEEeeeeccCCH-HHHHHHHHHHHHCCCCeEEEEEcCcccchHh------HHhccCCCCEEEeeCc
Confidence 33344 8888888875 3332 66666655 4667 688888887777776 3455689999999974
No 94
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=51.60 E-value=23 Score=24.95 Aligned_cols=113 Identities=8% Similarity=0.008 Sum_probs=64.6
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHH-HHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLK-GYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.||++++.++-.+-++.+.+-.+.+..|.+|+++-..... ...... .... ..+..+. + .+..+.-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T~~A~--------~fi~~~tg~~v-~~~~~l~----~-~~~~~~~ 66 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAK--------TTIELETPYSA-RDVAALA----D-FSHNPAD 66 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEECHHHH--------HHHHHHSSCCH-HHHHHTS----S-EEECTTC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEECchHH--------HHhHHHHCCCH-HHHHHhc----C-cccCchh
Confidence 3899999999888888888888766548888777643221 111100 0000 0011111 1 1110111
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH-------HHhccCCceEEEEeC
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN-------DISSSFNCRVLAIKQ 136 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~-------~i~~~~~~PVlvv~~ 136 (172)
.+.+.+.+ +..+|++|+..-.-..+.++-.| ++ .+.-+..+|+++++-
T Consensus 67 l~api~sg------s~~aD~mvIaPaTanTlAkiA~GiaDnLlt~aa~v~L~~~~plvl~Pa 122 (197)
T 1sbz_A 67 QAATISSG------SFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR 122 (197)
T ss_dssp TTSGGGST------TSCCSEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEEC
T ss_pred hcccccCC------CcccCEEEEecCCHhHHHHHHccccccHHHHHHHHHHhcCCCEEEEEC
Confidence 12222111 14699999999888888887777 32 223456799999986
No 95
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=50.79 E-value=53 Score=23.78 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 99 GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 99 ~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
.+|++++|-...+.+..++.|+. .+..+.+.|+.+..
T Consensus 142 ~~Dl~lLG~G~dGH~aslfPg~~-~~~~~~~~vv~~~~ 178 (248)
T 3oc6_A 142 GFDVHLLGMGGEGHVNSLFPDTD-AVRETERLVVGVSD 178 (248)
T ss_dssp SEEEEEECCCTTCCBTTBCTTCH-HHHCSSCSEEEESC
T ss_pred CCCEEEECCCCCCCEEEcCCCCh-hhccCcceEEEecC
Confidence 47999999999988888888874 33345556666643
No 96
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=49.86 E-value=36 Score=26.53 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.+...+|+++|=.+-- . .. . -..+.+++..+++|+++++...++.-. -.++.
T Consensus 174 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvl---k-t~-g-------lf~~~~~eva~eypdV~~~~~~VD~~~--mqlv~ 239 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRRKKVTSVDKANVL---Y-SS-M-------LWRKVVNEVAREYPDVELTHIYVDNAA--MQLIL 239 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---H-HH-H-------HHHHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCccc---c-cc-h-------HHHHHHHHHHHHCCCceEEeeeHHHHH--HHHhh
Confidence 568899999999998777788888765442 1 11 1 112234556667888888877664222 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 240 ~--P~~FDVivt~N 251 (366)
T 1vlc_A 240 K--PSQFDVILTTN 251 (366)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccceEEEEcc
Confidence 2 34578777653
No 97
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=49.13 E-value=14 Score=24.83 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCEEEEeec-----CCcchhHhhhh-HHHHhccCCceEEEEeCC
Q 030760 88 GARIAALVREIGASALVVGLH-----DRSFLHKLAMS-HNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~-----~~~~~~~~~~g-s~~i~~~~~~PVlvv~~~ 137 (172)
.+.|.+.+++++++.+|+|-- ..+......-+ ...+....++||..+.+.
T Consensus 44 ~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr 99 (150)
T 1vhx_A 44 LSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 99 (150)
T ss_dssp HHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCC
Confidence 499999999999999999932 22211111111 114444458999998644
No 98
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=48.64 E-value=89 Score=23.93 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHH
Q 030760 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~-~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~ 92 (172)
+.+++.+++|+++|.+. ..+|+++|=.+--. ....-+ .+.+++..+++|+++++...++.-. -.++
T Consensus 144 ~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk---~t~glf--------~~~~~eva~eyp~I~~~~~~vD~~~--m~lv 210 (333)
T 1x0l_A 144 KASERIGRAALRIAEGRPRKTLHIAHKANVLP---LTQGLF--------LDTVKEVAKDFPLVNVQDIIVDNCA--MQLV 210 (333)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEEEEECTTTCT---THHHHH--------HHHHHHHHTTCTTSEEEEEEHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecCccch---hhhHHH--------HHHHHHHHHHCCCceEEEEEHHHHH--HHHh
Confidence 56889999999999887 56888888554321 111111 1223555566788888877654322 2333
Q ss_pred HHHHHhCCCEEEEe
Q 030760 93 ALVREIGASALVVG 106 (172)
Q Consensus 93 ~~a~~~~~DllVmg 106 (172)
.. -.+.|.||+.
T Consensus 211 ~~--P~~FDVivt~ 222 (333)
T 1x0l_A 211 MR--PERFDVIVTT 222 (333)
T ss_dssp HC--GGGCSEEEEC
T ss_pred hC--cccceEEEEc
Confidence 32 3456877765
No 99
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=47.55 E-value=41 Score=26.17 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+-- . .. .. ..+.+++..+++|+++++...++.-. -.++.
T Consensus 170 ~~~eRiar~AFe~A~~rrkkVt~v~KaNvl---k-~~-~l-------f~~~~~eva~eypdI~~~~~~vD~~~--m~lv~ 235 (363)
T 1cnz_A 170 FEIERIARIAFESARKRRRKVTSIDKANVL---Q-SS-IL-------WREIVNDVAKTYPDVELAHMYIDNAT--MQLIK 235 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---H-HH-HH-------HHHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCccc---c-cc-hh-------HHHHHHHHHHHCCCceEeeeeHHHHH--HHHhh
Confidence 668899999999998777788888865442 1 11 11 12233555567888888876653222 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 236 ~--P~~FDVivt~N 247 (363)
T 1cnz_A 236 D--PSQFDVLLCSN 247 (363)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccceEEEECC
Confidence 2 34578777653
No 100
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=47.35 E-value=78 Score=22.93 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 99 GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 99 ~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
.+|++++|-...+.+..++.|+. .+..+.+.|+.+.+
T Consensus 144 ~~Dl~lLG~G~DGH~as~fPg~~-~~~~~~~~vv~~~~ 180 (251)
T 3tx2_A 144 AFDVHLLGMGGEGHINSLFPHTD-AVKETQRLVVAVPD 180 (251)
T ss_dssp CCSEEEECCCTTCCBTTBCTTCH-HHHCSSCSEEEESC
T ss_pred CCCEEEECCCCCCceEEcCCcCh-hhccCcceEEEecC
Confidence 57999999999888888888874 33345556666643
No 101
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=47.08 E-value=42 Score=26.05 Aligned_cols=78 Identities=8% Similarity=0.031 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+-- . .. .. ..+.+++..+++|+++++...++.-. -.++.
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvl---k-~~-~l-------f~~~~~eva~eypdI~~~~~~VD~~~--mqlv~ 228 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANVL---E-VG-EF-------WRKTVEEVGRGYPDVALEHQYVDAMA--MHLVR 228 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---H-HH-HH-------HHHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCccc---c-cc-HH-------HHHHHHHHHHHCCcEEEEeeEHHHHH--HHHhh
Confidence 568899999999998777788888865442 1 11 11 22234555567888888877654222 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 229 ~--P~~FDVivt~N 240 (359)
T 2y3z_A 229 S--PARFDVVVTGN 240 (359)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccccEEEEcC
Confidence 2 34578777653
No 102
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=46.94 E-value=37 Score=26.32 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHH
Q 030760 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~-~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~ 92 (172)
+.+++.+++|+++|.+. ..+|+++|=.+--. ... .. ..+.+++..+++|+++++...++.-. -.++
T Consensus 163 ~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk---~sd-gl-------f~~~~~eva~eypdI~~~~~~vD~~~--m~lv 229 (354)
T 3blx_B 163 DASERVIRYAFEYARAIGRPRVIVVHKSTIQR---LAD-GL-------FVNVAKELSKEYPDLTLETELIDNSV--LKVV 229 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEESCTTTC---HHH-HH-------HHHHHHHHGGGCTTSEEEEEEHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCcchH---hHH-HH-------HHHHHHHHHHHCCCceEEEEEHHHHH--HHHh
Confidence 56888899999999876 56788888665421 111 11 12234556667888888877754322 2233
Q ss_pred HHHHHhCCC--EEEEee
Q 030760 93 ALVREIGAS--ALVVGL 107 (172)
Q Consensus 93 ~~a~~~~~D--llVmg~ 107 (172)
.. -.+.| .||+..
T Consensus 230 ~~--P~~FD~~Vivt~N 244 (354)
T 3blx_B 230 TN--PSAYTDAVSVCPN 244 (354)
T ss_dssp HC--GGGGTTEEEEECH
T ss_pred hC--hhhCCceEEEecC
Confidence 22 24457 777653
No 103
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=46.55 E-value=26 Score=18.25 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=19.1
Q ss_pred CcEEEEEecCCchHHHHHHHHHHhCCCE
Q 030760 75 TNVEIIVTEGDQEGARIAALVREIGASA 102 (172)
Q Consensus 75 ~~~~~~~~~g~~~~~~I~~~a~~~~~Dl 102 (172)
-++..+..-...--+.|++|+++.+.|-
T Consensus 10 kkvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 10 KKVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred ceeEEEEeeCCchhHHHHHHHHHccchh
Confidence 3455555444433499999999998774
No 104
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=45.53 E-value=50 Score=25.59 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+-- . .. . -..+.+++..+++|+++++...++.-. -.++.
T Consensus 165 ~~~eRiar~AFe~A~~rrkkVt~v~KaNvl---k-~~-~-------lf~~~~~eva~eypdI~~~~~~vD~~~--mqlv~ 230 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGRRKQLCSVDKANVL---E-TT-R-------LWREVVTEVARDYPDVRLSHMYVDNAA--MQLIR 230 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---H-HH-H-------HHHHHHHHHGGGCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCccc---c-cc-h-------hHHHHHHHHHHHCCCceEEeeeHHHHH--HHHHh
Confidence 668889999999998777788888865442 1 11 1 122234566667888888876654222 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 231 ~--P~~FDVivt~N 242 (358)
T 1a05_A 231 A--PAQFDVLLTGN 242 (358)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--CCcccEEEecC
Confidence 2 34578777653
No 105
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=45.42 E-value=54 Score=20.52 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
++.+++. ++++++....-... +... .++|+|++|..-+..++. -.......++||.+++.
T Consensus 27 ~~~a~~~-gi~v~i~a~~~~~~-~~~~-----~~~DvvLLgPQV~y~~~~----ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 27 NEGANLT-EVRVIANSGAYGAH-YDIM-----GVYDLIILAPQVRSYYRE----MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHH-TCSEEEEEEETTSC-TTTG-----GGCSEEEECGGGGGGHHH----HHHHHTTTTCEEEECCH
T ss_pred HHHHHHC-CCceEEEEcchHHH-Hhhc-----cCCCEEEEChHHHHHHHH----HHHHhhhcCCcEEEeCH
Confidence 4444443 67777665322222 2211 348999999774443332 12556667899999874
No 106
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=45.29 E-value=1.2e+02 Score=24.74 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=33.7
Q ss_pred EEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 80 IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 80 ~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
.+..+... ..+.+.+++.++|+++-+++++. +.+-. .+...+..+|.+.+-
T Consensus 420 ~v~~~~D~-~~l~~~i~~~~pDLlig~s~~k~-~a~~~---~~~~~~~giP~irig 470 (523)
T 3u7q_B 420 TVYIGKDL-WHLRSLVFTDKPDFMIGNSYGKF-IQRDT---LHKGKEFEVPLIRIG 470 (523)
T ss_dssp EEEESCCH-HHHHHHHHHTCCSEEEECTTHHH-HHHHH---HHHCGGGCCCEEECS
T ss_pred EEEECCCH-HHHHHHHHhcCCCEEEECccHHH-HHHHh---hcccccCCCceEEec
Confidence 35566665 89999999999999998876543 22200 023444488887653
No 107
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=44.93 E-value=47 Score=26.11 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
..+++.+++|+++|.+...+|+++|=.+- . . .. ... .+.+++..+++|+++++...++.-. -.++.
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~KaNV--l-~-t~-glf-------r~~~~eva~eYPdV~~~~~~VD~~a--mqLV~ 251 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKANV--L-E-SS-RLW-------REVAEEVAKEYPDVELEHMLVDNAA--MQLIR 251 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT--C-H-HH-HHH-------HHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECCcc--c-c-cc-hHH-------HHHHHHHHhHCCCCeEEeeeHHHHH--HHHHh
Confidence 56888999999999877888888875433 1 1 11 111 1223555566788888777664222 23333
Q ss_pred HHHHhCCCEEEEe
Q 030760 94 LVREIGASALVVG 106 (172)
Q Consensus 94 ~a~~~~~DllVmg 106 (172)
. -.+.|.||+.
T Consensus 252 ~--P~~FDViVt~ 262 (390)
T 3u1h_A 252 N--PRQFDVIVTE 262 (390)
T ss_dssp C--GGGCSEEEEC
T ss_pred C--cccCcEEEec
Confidence 2 3457877765
No 108
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=44.55 E-value=47 Score=25.81 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+- . . .. .. ..+.+++..+++|+++++...++.-. -.++.
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaNv--l-~-t~-gl-------f~~~~~eva~eypdV~~~~~~VD~~a--m~lv~ 232 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKANV--L-A-SS-IL-------WREVVANVAKDYQDINLEYMYVDNAA--MQIVK 232 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTTT--C-H-HH-HH-------HHHHHHHHGGGCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchh--h-c-cc-hH-------HHHHHHHHHHHCCCCeEEeeeHHHHH--HHHHh
Confidence 56888899999999777788988885433 1 1 11 11 12234666667888888877654222 23333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 233 ~--P~~FDViVt~N 244 (361)
T 3udu_A 233 N--PSIFDVMLCSN 244 (361)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccCcEEEecc
Confidence 2 34578777653
No 109
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=44.28 E-value=55 Score=24.05 Aligned_cols=46 Identities=7% Similarity=0.063 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 90 RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 90 ~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
-+++++++.+.|++|+.+-...... -.+...++....+|++|+.+.
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~PG--P~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAPG--PSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSHH--HHHHHHHHHTSSSCEEEEEEG
T ss_pred HhhhhhhhcCCCEEEEECCCCCCCC--chHHHHHHHhCCCCEEEEcCC
Confidence 3445568899999999987654222 112338888999999999754
No 110
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=44.20 E-value=54 Score=25.92 Aligned_cols=77 Identities=3% Similarity=-0.023 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+- +... . -..+.+++..+++|+++++...++.-. -.++.
T Consensus 207 ~~~eRIar~AFe~A~~rrkkVT~v~KaNV---lk~s--g-------lf~~~~~eva~eYPdV~~~~~~VD~~a--mqLV~ 272 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRRGKLCSVDKANV---LEAS--I-------LWRKRVTALASEYPDVELSHMYVDNAA--MQLVR 272 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHGGGSTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECchh---hccc--c-------HHHHHHHHHHhHCCCCeEEeeeHHHHH--HHHHh
Confidence 56888899999999877788888885433 1111 1 122233555667888888877654222 23333
Q ss_pred HHHHhCCCEEEEe
Q 030760 94 LVREIGASALVVG 106 (172)
Q Consensus 94 ~a~~~~~DllVmg 106 (172)
. -.+.|.||+.
T Consensus 273 ~--P~~FDViVt~ 283 (405)
T 3r8w_A 273 D--PKQFDTIVTN 283 (405)
T ss_dssp C--GGGCSEEEEC
T ss_pred C--hhhCcEEeec
Confidence 2 3457877765
No 111
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.43 E-value=89 Score=22.44 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHhhhhcCCcEEEEEec--CCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 66 KDICNDFFNTNVEIIVTE--GDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~--g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
++.+++. +.++.+.... ++.. ....++.+...++|-||+...........+ .-+....+||+.+-..
T Consensus 26 ~~~a~~~-g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~----~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 26 KKAAEEL-KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSL----QRANKLNIPVIAVDTR 95 (297)
T ss_dssp HHHHHHH-TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHH----HHHHHHTCCEEEESCC
T ss_pred HHHHHHh-CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH----HHHHHCCCCEEEEcCC
Confidence 4444443 6666655433 2321 124556666788999998766544333322 4556678999998533
No 112
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=43.28 E-value=50 Score=23.89 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+++.+.+.++|+|.+|-+..-..+..+ .-..-+++.++|++++..-
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~-~~v~~ir~~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKAR-TLIEKVSQYGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHH-HHHHHHTTSCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH-HHHHHhcCCCCCEEEecCC
Confidence 45678888889999999975444455433 2223334478999998765
No 113
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=42.85 E-value=52 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=14.8
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHH
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQ 25 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~ 25 (172)
|...++.++.|+.+. ..+++.+..
T Consensus 4 m~~~~lilalD~~~~-~~~~~~~~~ 27 (218)
T 3jr2_A 4 MTKPMIQIALDQTNL-TDAVAVASN 27 (218)
T ss_dssp -CCCEEEEEECCSSH-HHHHHHHHH
T ss_pred CCCCCeEEEeCCCCH-HHHHHHHHH
Confidence 566789999999643 333444444
No 114
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=42.79 E-value=77 Score=24.74 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHH
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~ 93 (172)
+.+++.+++|+++|.....+|+++|=.+-- ... .. ..+.+++..+++|+++++...++.-. -.++.
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~KaNvl---~~~--gl-------f~~~~~eva~eypdV~~~~~~VD~~a--m~lv~ 244 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKANVL---ACS--VL-------WREVVEEVAKDYPDVELEHIYIDNAT--MQLLR 244 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---HHH--HH-------HHHHHHHHHTTCTTSEEEEEEHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchhh---hhh--hH-------HHHHHHHHHHHCCCceEeeeeHHHHH--HHHHh
Confidence 568889999999998778888888754331 111 11 12234556667888888777654222 33333
Q ss_pred HHHHhCCCEEEEee
Q 030760 94 LVREIGASALVVGL 107 (172)
Q Consensus 94 ~a~~~~~DllVmg~ 107 (172)
. -.+.|.||+..
T Consensus 245 ~--P~~FDViVt~N 256 (375)
T 3vmk_A 245 R--PNEFDVMLCSN 256 (375)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccCcEEEECc
Confidence 2 34578777653
No 115
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=42.51 E-value=34 Score=26.62 Aligned_cols=78 Identities=9% Similarity=-0.053 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHH
Q 030760 14 DAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~-~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~ 92 (172)
+.+++.+++|+++|...+. +|+++|=.+-- .... ..+ .+.+++..+++|+++++...++.-. -.++
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~KaNvl---k~s~-glf-------~~~~~eva~eypdv~~~~~~vD~~a--m~lv 232 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATKSNGM---AISM-PYW-------DKRTEAMAAHYPHVSWDKQHIDILC--ARFV 232 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECTTTS---TTHH-HHH-------HHHHHHHHTTCTTCEEEEEEHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECcchh---hhHH-HHH-------HHHHHHHHHHCCCceEEeeEHHHHH--HHHH
Confidence 5688899999999987765 79988854332 1111 111 1223555566788888776664322 2333
Q ss_pred HHHHHhCCCEEEEe
Q 030760 93 ALVREIGASALVVG 106 (172)
Q Consensus 93 ~~a~~~~~DllVmg 106 (172)
.. -.+.|.||+.
T Consensus 233 ~~--P~~FDVivt~ 244 (364)
T 3flk_A 233 LQ--PERFDVVVAS 244 (364)
T ss_dssp HC--GGGCSEEEEC
T ss_pred hC--cccCcEEEec
Confidence 32 3557877765
No 116
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=42.42 E-value=99 Score=22.68 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=26.4
Q ss_pred CCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 99 GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 99 ~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
.+|++++|-...+.+..+|.|+..+. .+...|+.+.+
T Consensus 160 ~~Dl~lLGmG~DGH~as~fPg~~~~~-~t~~~vv~~~~ 196 (268)
T 3ico_A 160 NFDVHLLGMGPEGHINSLFPHSPAVL-ESTRMVVAVDD 196 (268)
T ss_dssp CCSEEEECCCTTCCBTTBCTTCHHHH-CSSCSEEEESC
T ss_pred CcceEEeccCCcccccccCCCChhhh-hhceEEEEecC
Confidence 68999999999998898888874332 34444555543
No 117
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.04 E-value=96 Score=22.42 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=40.7
Q ss_pred HHHhhhhcCCcEEEEEecCCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
++.+++. +..+.+....++.. ....++.+...++|-||+...........+ .-+....+||+++-..
T Consensus 25 ~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~----~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 25 VKKAESL-GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVV----KEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHT-SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHH----HHHHTTTCEEEEESSC
T ss_pred HHHHHHc-CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH----HHHHHCCCeEEEECCc
Confidence 4444443 66666655544432 124566677789999998876554333211 4566789999998643
No 118
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=41.51 E-value=1.4e+02 Score=24.08 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc--hHHHHHHHHHHHHHHHHHHHHhhhh--cCCcEEEEEec-CC
Q 030760 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN--RKKLRLLRLKGYQLALSFKDICNDF--FNTNVEIIVTE-GD 85 (172)
Q Consensus 11 d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-g~ 85 (172)
|+--....+|..|++. + .+..|++.++..... ..... ...+.+.++++.++. .|..+ .+.. |+
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~-----~~fl~~sL~~L~~~L~~~G~~L--~v~~~g~ 88 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVS-----RWWLKNSLAQLDSSLRSLGTCL--ITKRSTD 88 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHH-----HHHHHHHHHHHHHHHHHTTCCE--EEEECSC
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHH-----HHHHHHHHHHHHHHHHHCCCeE--EEEeCCC
Confidence 4433445566666654 3 577899987753211 11001 002222233332221 14443 4454 67
Q ss_pred chHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhH-HHHhccCCceEEEEeC
Q 030760 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSH-NDISSSFNCRVLAIKQ 136 (172)
Q Consensus 86 ~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs-~~i~~~~~~PVlvv~~ 136 (172)
+. +.|.+.+++.+++.|+....- ...+.-.-.. ...+....+++..+..
T Consensus 89 ~~-~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 89 SV-ASLLDVVKSTGASQIFFNHLY-DPLSLVRDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HH-HHHHHHHHHHTCCEEEEECCC-SHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HH-HHHHHHHHHcCCCEEEEeccc-CHHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 75 999999999999999886532 2222111111 1445566788877653
No 119
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=40.66 E-value=24 Score=24.92 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=65.4
Q ss_pred CceEEEEEecCCHHHH-HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 2 DVKKIVVIVEDVDAAR-AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~-~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
.-|+|++++.++-.+- ++++.+-.+.+ .|.+|+++--.....+..... . .++....++.+. +.++...
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~T~~A~~~i~~~~-~-----~~~~~~~l~~l~----g~~v~~~ 74 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFVTHTVQTTDTKFG-E-----SSEWINKIKQIT----EEPIVDS 74 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEECSSCSCCTTCCTT-C-----SCHHHHHHHHHC----CSCCBCS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEEChhHHHHHHHhh-c-----hhHHHHHHHHHh----CCCeEee
Confidence 3579999999997777 78777777765 478888776544433322110 0 000111122221 1111100
Q ss_pred EecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH-------HHhccCCceEEEEe
Q 030760 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN-------DISSSFNCRVLAIK 135 (172)
Q Consensus 81 ~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~-------~i~~~~~~PVlvv~ 135 (172)
.. .+.+..-...+|++|+..-.-..+.++-.| ++ ...-+..+|+++++
T Consensus 75 ~~-------~~~hi~~s~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~P 130 (201)
T 3lqk_A 75 MV-------KAEPFGPKTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGI 130 (201)
T ss_dssp HH-------HHGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEE
T ss_pred cC-------cccccccccccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEE
Confidence 00 111111145689999999888888887777 32 22234689999997
No 120
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=40.56 E-value=40 Score=22.89 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CCceEEEEEecC-CHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 1 MDVKKIVVIVED-VDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 1 m~~k~Ilv~~d~-s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
|.+.||++-... +.++...++++.+-+...+.++.++++.+.
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 566788777644 566888888888887777888888887653
No 121
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=40.25 E-value=98 Score=22.00 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHhhhhcCCcEEEEEecCCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 64 SFKDICNDFFNTNVEIIVTEGDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+++.+.+. +.++......++.. ....++.....++|-||+...........+ .-+...++||+++-..
T Consensus 29 gi~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~----~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 29 AFKAEAKAN-KYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAI----EEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHH----HHHHHTTCCEEEESSC
T ss_pred HHHHHHHHc-CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHH----HHHHHcCCCEEEecCC
Confidence 334444444 66666655544442 124566666789999998765444322211 4556679999998543
No 122
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=40.05 E-value=1e+02 Score=22.05 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHhhhhcCCcEEEEEecC--Cch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 65 FKDICNDFFNTNVEIIVTEG--DQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~g--~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
+++.+++. +.++.+....+ +.. ....++.+...++|-||+.......+...+ .-+. ..+||+++-
T Consensus 27 ~~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~----~~~~-~~iPvV~~~ 94 (304)
T 3o1i_D 27 MVSEAEKQ-GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNL----KSWV-GNTPVFATV 94 (304)
T ss_dssp HHHHHHHH-TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTH----HHHT-TTSCEEECS
T ss_pred HHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHH----HHHc-CCCCEEEec
Confidence 34444443 66666665554 421 134566666788999998866544333221 3345 899999983
No 123
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=39.87 E-value=73 Score=20.42 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCceEEEEEecC-CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEE
Q 030760 1 MDVKKIVVIVED-VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (172)
Q Consensus 1 m~~k~Ilv~~d~-s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
|.+|.|++-+.- +++-...++.+..=++..|..=.+++|+.+.... +.+.. .++..-+..+..++.
T Consensus 1 l~~k~i~~lv~v~~E~l~n~fRk~fkD~R~~GskKvviNvis~~~y~-----e~v~~--------~REAiLDNIDlG~el 67 (126)
T 2rbg_A 1 MPYKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQ-----ELVTL--------IREALLENIDIGYEL 67 (126)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHH-----HHHHH--------THHHHHHTTTSEEEE
T ss_pred CCCCceEEEEecchhhHHHHHHHHHHHHHhcCCceEEEEEecCCcHH-----HHHHH--------HHHHHHhccccceEE
Confidence 467888888876 4567777888888888889988999999875421 11111 122222233788888
Q ss_pred EEecCCchHHHHHHHHHHhCCCEEEEeecCC
Q 030760 80 IVTEGDQEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 80 ~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
.+..-+.+ +...+-+.+.++|=+++=....
T Consensus 68 ~~WKp~eV-dkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 68 FLWKKNEV-DIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp EEECGGGH-HHHHHHHTTCCCCEEEEEECGG
T ss_pred EEeCHHHH-HHHHHHHHHhCCCceEEEeCCC
Confidence 88887777 8888888888899887766544
No 124
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=39.73 E-value=99 Score=21.94 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=47.6
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
...||+|-+.++...-.++-.+.. ...+.+|.+| +..+.. + ..+.+.++ ++++...-
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a--~----------------~~~~A~~~-gIp~~~~~ 67 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDREC--R----------------AAEIAAEA-SVPVFTVR 67 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCC--H----------------HHHHHHHT-TCCEEECC
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCch--H----------------HHHHHHHc-CCCEEEeC
Confidence 356899988887655444433332 1334566554 333211 0 12333333 66655442
Q ss_pred ec-CCc---hHHHHHHHHHHhCCCEEEEeecCC
Q 030760 82 TE-GDQ---EGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 82 ~~-g~~---~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
.. ... ..+.+.+..++.++|++|+..-.+
T Consensus 68 ~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 68 LADHPSRDAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp GGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred cccccchhhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 11 111 136788999999999999987653
No 125
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=37.23 E-value=77 Score=22.35 Aligned_cols=49 Identities=2% Similarity=-0.101 Sum_probs=30.1
Q ss_pred CCchHHHHHHHHHHhCCCEEEE--eecCCcchhHhhhhHHHHhccC----CceEEEE
Q 030760 84 GDQEGARIAALVREIGASALVV--GLHDRSFLHKLAMSHNDISSSF----NCRVLAI 134 (172)
Q Consensus 84 g~~~~~~I~~~a~~~~~DllVm--g~~~~~~~~~~~~gs~~i~~~~----~~PVlvv 134 (172)
.-+. +.+++.++++++|+|.+ .......... +..-...++.. ++||++=
T Consensus 129 ~vp~-e~iv~~~~~~~~d~v~l~~S~l~~~~~~~-~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 129 DVLN-ENVVEEAAKHKGEKVLLVGSALMTTSMLG-QKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp SCCH-HHHHHHHHHTTTSCEEEEEECSSHHHHTH-HHHHHHHHHHTTCGGGSEEEEE
T ss_pred CCCH-HHHHHHHHHcCCCEEEEEchhcccCcHHH-HHHHHHHHHHcCCCCCCEEEEE
Confidence 4454 99999999999999999 5544333222 11111334333 4777774
No 126
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=36.98 E-value=32 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHHH----HHhCCCEEEEeecCCcchhH
Q 030760 89 ARIAALV----REIGASALVVGLHDRSFLHK 115 (172)
Q Consensus 89 ~~I~~~a----~~~~~DllVmg~~~~~~~~~ 115 (172)
+.+.+.+ ++.++|.||+|..+...+..
T Consensus 160 ~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~ 190 (245)
T 3qvl_A 160 EKVRERCIRALKEDGSGAIVLGSGGMATLAQ 190 (245)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCGGGGGGHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChHHHHH
Confidence 4455543 34689999999999877665
No 127
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=36.71 E-value=1.7e+02 Score=23.72 Aligned_cols=30 Identities=7% Similarity=-0.175 Sum_probs=23.0
Q ss_pred EEEecCCchHHHHHHHHHHhCCCEEEEeecC
Q 030760 79 IIVTEGDQEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 79 ~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
..+..+... ..+.+.+++.++|++|-+++.
T Consensus 415 ~~v~~~~d~-~~l~~~i~~~~pDLiig~~~~ 444 (519)
T 1qgu_B 415 SEVFINCDL-WHFRSLMFTRQPDFMIGNSYG 444 (519)
T ss_dssp CEEEESCCH-HHHHHHHHHHCCSEEEECGGG
T ss_pred CEEEECCCH-HHHHHHHhhcCCCEEEECcch
Confidence 345666664 889999999999999976653
No 128
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=36.21 E-value=1.1e+02 Score=22.08 Aligned_cols=38 Identities=8% Similarity=-0.031 Sum_probs=30.2
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
++++++|++.+.-+|..++..+.+. .|..++.+|+...
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~~ 62 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPTQ 62 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecCC
Confidence 4689999999999998888777654 2567889988754
No 129
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=35.81 E-value=56 Score=25.24 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHh-hhhcCCcEEEEEecCCchHHH
Q 030760 13 VDAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDIC-NDFFNTNVEIIVTEGDQEGAR 90 (172)
Q Consensus 13 s~~s~~al~~a~~la~~~-~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 90 (172)
.+.+++.+++|+++|... ..+|+++|=.+--.. ....+ .+.+++.. +++|+++++...++.-. -.
T Consensus 156 ~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~---sdglf--------~~~~~eva~~eyp~i~~~~~~vD~~~--~q 222 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNRKSVTAVHKANIMKL---GDGLF--------RNIITEIGQKEYPDIDVSSIIVDNAS--MQ 222 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTT---HHHHH--------HHHHHHHHHHHCTTSEEEEEEHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchh---hHHHH--------HHHHHHHHHhhCCCeeEEEeeHHHHH--HH
Confidence 356888999999999876 567888886544221 11111 11234555 46778888877764322 23
Q ss_pred HHHHHHHhCCCEEEEee
Q 030760 91 IAALVREIGASALVVGL 107 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~ 107 (172)
++.. -.+.|.||+..
T Consensus 223 lv~~--P~~FDVivt~N 237 (349)
T 3blx_A 223 AVAK--PHQFDVLVTPS 237 (349)
T ss_dssp HHHC--GGGCSEEEECH
T ss_pred HhhC--cccccEEEECC
Confidence 3332 34578777653
No 130
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=35.68 E-value=1.2e+02 Score=21.83 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=49.8
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEec
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
.|+++.+.+..+|..++.++. ..|-+|..|+...+...... .. .....+.++..++.. +++....-..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~----~~---h~~~~e~a~~~A~~L-GIpl~~v~~~ 72 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESY----MY---HTINANLTDLQARAL-GIPLVKGFTQ 72 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC---------------CCSSSHHHHHHHHH-TCCEEEEEC-
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCcc----cc---CCccHHHHHHHHHHc-CCCEEEEECC
Confidence 389999999999988777654 35667877765433211000 00 000001122333333 6666555544
Q ss_pred CC---chHHHHHHHHHHhCCCEEEEeecC
Q 030760 84 GD---QEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 84 g~---~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
|. -. +.+.+..++.+++.+|.|.--
T Consensus 73 g~~~~e~-e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 73 GEKEKEV-EDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp -----CH-HHHHHHHTTSCCSEEECC---
T ss_pred CCchHHH-HHHHHHHHhcCCcEEEECCcc
Confidence 43 33 667777777789999998754
No 131
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=35.66 E-value=1.1e+02 Score=21.27 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=40.9
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
|...+++++.|+.+.. .+++.+.+. +..+..+.|.... +....-... +.+.+.+++.++-.-
T Consensus 1 ~~~~~~ilalD~~~~~-~~~~~~~~~----~~~v~~~kv~~~~----------f~~~G~~~i---~~l~~~~p~~~v~lD 62 (216)
T 1q6o_A 1 MSLPMLQVALDNQTMD-SAYETTRLI----AEEVDIIEVGTIL----------CVGEGVRAV---RDLKALYPHKIVLAD 62 (216)
T ss_dssp --CCEEEEEECCSSHH-HHHHHHHHH----GGGCSEEEECHHH----------HHHHCTHHH---HHHHHHCTTSEEEEE
T ss_pred CCcCCeEEEECCCCHH-HHHHHHHHh----cccCCEEEECHHH----------HHHhCHHHH---HHHHHhCCCCeEEEE
Confidence 6667899999997543 333433333 2223444553321 111111111 222222223333332
Q ss_pred EecCCchHHHHHHHHHHhCCCEEEEeecC
Q 030760 81 VTEGDQEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 81 ~~~g~~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
+-..+.. ....+.+.+.++|++.+-...
T Consensus 63 ~kl~dip-~t~~~~~~~~Gad~itvh~~~ 90 (216)
T 1q6o_A 63 AKIADAG-KILSRMCFEANADWVTVICCA 90 (216)
T ss_dssp EEECSCH-HHHHHHHHHTTCSEEEEETTS
T ss_pred EEecccH-HHHHHHHHhCCCCEEEEeccC
Confidence 3223333 555666667778877765443
No 132
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=35.32 E-value=1.3e+02 Score=23.28 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhccC-------------CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHH---hhhhcCCcE
Q 030760 14 DAARAALLWALQNLLRF-------------GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDI---CNDFFNTNV 77 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~-------------~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 77 (172)
+.+++.+++|+++|... ..+|+++|=.+-- .... ..+ .+.+++. .+++|++++
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl---~~s~-glf-------~~~~~ev~~~a~eypdV~~ 230 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVM---SVTD-GLF-------RESCRHAQSLDPSYASINV 230 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTC---TTHH-HHH-------HHHHHHHGGGCGGGTTSEE
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcch---HhHH-HHH-------HHHHHHHHHhHhhCCCceE
Confidence 56788888888888655 5688888854331 1111 111 1223555 566888888
Q ss_pred EEEEecCCchHHHHHHHHHHhCCCEEEEe
Q 030760 78 EIIVTEGDQEGARIAALVREIGASALVVG 106 (172)
Q Consensus 78 ~~~~~~g~~~~~~I~~~a~~~~~DllVmg 106 (172)
+...++.-. -.++.. -.+.|.||+.
T Consensus 231 ~~~~VD~~a--m~lv~~--P~~FDViVt~ 255 (366)
T 3ty4_A 231 DEQIVDSMV--YRLFRE--PECFDVVVAP 255 (366)
T ss_dssp EEEEHHHHH--HHHHHC--GGGCSEEEEC
T ss_pred EeeeHHHHH--HHHHhC--cccCcEEEEC
Confidence 877664332 233332 3457877765
No 133
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=34.99 E-value=1.2e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 90 RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 90 ~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
..++.....++|-||+........... -.-+....+||+++-
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~~~~----~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLGSAI----VAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGHHHH----HHHHHHTTCEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCchhhHHH----HHHHHHCCCcEEEeC
Confidence 345555667899999886544322221 145667799999986
No 134
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.74 E-value=92 Score=20.08 Aligned_cols=58 Identities=12% Similarity=-0.106 Sum_probs=36.8
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccC---CceEEEE
Q 030760 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF---NCRVLAI 134 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~---~~PVlvv 134 (172)
|.++...-. ..+. +.+++.+++.++|+|.+.+........ +..--..++.. +++|++=
T Consensus 31 G~~Vi~lG~-~~p~-e~~v~~a~~~~~d~v~lS~~~~~~~~~-~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 31 GFNVVNIGV-LSPQ-ELFIKAAIETKADAILVSSLYGQGEID-CKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp TCEEEEEEE-EECH-HHHHHHHHHHTCSEEEEEECSSTHHHH-HTTHHHHHHHTTCTTCEEEEE
T ss_pred CCEEEECCC-CCCH-HHHHHHHHhcCCCEEEEEecCcCcHHH-HHHHHHHHHhcCCCCCEEEEE
Confidence 666554433 3444 999999999999999999987654442 22112334332 3677664
No 135
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=34.46 E-value=1.2e+02 Score=21.28 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHH---hhhhcCCcEEEEEecCCchHHHHH
Q 030760 16 ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDI---CNDFFNTNVEIIVTEGDQEGARIA 92 (172)
Q Consensus 16 s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~I~ 92 (172)
+...+..++++|...|++..++|.......... ..++..+...+.++++ +++. ++.+-+....+... +.+.
T Consensus 74 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~----~~~~~~~~~~~~l~~l~~~a~~~-gv~l~lEn~~~~~~-~~~~ 147 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELGADRAVFHSGIPHGRTPE----EALERALPLAEALGLVVRRARTL-GVRLLLENSHEPHP-EALR 147 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHH----HHHHTHHHHHHHTHHHHHHHHHH-TCEEEEECSSCSSG-GGTH
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCCcccccc----cHHHHHHHHHHHHHHHHHHHhhc-CCEEEEcCCCCCCH-HHHH
Confidence 346688899999999999888886543322110 1111222222333333 3333 67666665555554 6777
Q ss_pred HHHHHhC
Q 030760 93 ALVREIG 99 (172)
Q Consensus 93 ~~a~~~~ 99 (172)
..+++.+
T Consensus 148 ~l~~~v~ 154 (254)
T 3ayv_A 148 PVLEAHA 154 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 7777765
No 136
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=34.31 E-value=1.2e+02 Score=21.36 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
|..+||.|-+.++.....++-.++.- ...+.+|.+|-...+.. . . .+.+.++ ++++...
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~~~a--~-~----------------l~~A~~~-gIp~~~~ 63 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDKAEA--G-G----------------LAKAEAA-GIATQVF 63 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESCTTC--T-H----------------HHHHHHT-TCCEEEC
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECCccc--H-H----------------HHHHHHc-CCCEEEe
Confidence 56678999998876555444444321 11234554443332211 1 0 1223333 6665543
Q ss_pred Eec--CC--chHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 81 VTE--GD--QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 81 ~~~--g~--~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
-.. .+ ...+.+.+..++.++|++|+..-.+-- . ..++...+..++=+++.
T Consensus 64 ~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il-~------~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 64 KRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLL-S------GRFIAPYEGRILNIHPS 117 (209)
T ss_dssp CGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCC-C------HHHHGGGTTCEEEEESS
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCc-C------HHHHhhccCCeEEECCc
Confidence 221 11 112689999999999999998654321 1 13444444455555543
No 137
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=34.08 E-value=39 Score=24.53 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V 39 (172)
.+++|++++|.+++. ++.|+ ..++.+.+.|=
T Consensus 34 ~V~~I~~~lD~t~~v---i~eAi----~~~adlIitHH 64 (247)
T 1nmo_A 34 TVQKIVTGVTASQAL---LDEAV----RLGADAVIVHH 64 (247)
T ss_dssp BCCEEEEEEECCHHH---HHHHH----HTTCSEEEEEE
T ss_pred ccCEEEEEEcCCHHH---HHHHH----hCCCCEEEECC
Confidence 478999999999854 34443 35666777774
No 138
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=33.92 E-value=1.3e+02 Score=21.40 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=45.9
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+||.|-+.++.....++-.++ ...+-...++-|+....... . .+++.+. ++++...-.
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~---~~~~~~~~I~~Vis~~~~a~-~----------------l~~A~~~-gIp~~~~~~ 66 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAF---STEESSVVISCVISNNAEAR-G----------------LLIAQSY-GIPTFVVKR 66 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHT---CCC-CSEEEEEEEESCTTCT-H----------------HHHHHHT-TCCEEECCB
T ss_pred CCEEEEEEECCcHHHHHHHHHH---HcCCCCcEEEEEEeCCcchH-H----------------HHHHHHc-CCCEEEeCc
Confidence 4689998888765544433333 22221234444444321111 0 1223333 665544322
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecCC
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
..-. .+.+.+..++.++|++|+..-.+
T Consensus 67 ~~~~-~~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 67 KPLD-IEHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp TTBC-HHHHHHHHHHTTCSEEEESSCCS
T ss_pred ccCC-hHHHHHHHHHhCCCEEEEeCCce
Confidence 2223 27899999999999999986543
No 139
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=33.45 E-value=97 Score=23.97 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhH-HHHhccCCceEEEEeCCCC
Q 030760 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSH-NDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs-~~i~~~~~~PVlvv~~~~~ 139 (172)
.+.+.+.+++.++|-||.-.............. ...++...+|+|.+.-+..
T Consensus 302 ~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~giP~l~ie~D~~ 354 (385)
T 3o3m_B 302 GSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQ 354 (385)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCCccHhhHHHHHHHHHHCCCCEEEEEecCC
Confidence 488999999999999999888776554422222 2556889999999975433
No 140
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=33.07 E-value=38 Score=24.07 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=62.4
Q ss_pred CceEEEEEecCCHHHHH-HHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 030760 2 DVKKIVVIVEDVDAARA-ALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~-al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
.-|+|++++.++-.+-+ +++.+-.+.+ .|.+|+++-......... .+.. .++....++.+.. .++.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T~~A~~vl~-----~f~~-~~~~~~~l~~ltg----~~v~-- 70 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVSYTVQSTNT-----RFGE-GAEWIKKIEEITG----FKAI-- 70 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEECC------------------CHHHHHHHHHSS----SCCB--
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEehHHHHHHH-----HhcC-chhHHHHHHHHhC----CceE--
Confidence 35799999999876554 6666655555 488888876543321100 0000 0001112233321 1110
Q ss_pred EecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhh-HH-------HHhccCCceEEEEe
Q 030760 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMS-HN-------DISSSFNCRVLAIK 135 (172)
Q Consensus 81 ~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~g-s~-------~i~~~~~~PVlvv~ 135 (172)
.+. ....+..-...+|++|+..-.-..+.++-.| ++ .+.-+..+||++++
T Consensus 71 ---~~~--~~~~hi~ls~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaP 128 (207)
T 3mcu_A 71 ---NSI--VGAEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAV 128 (207)
T ss_dssp ---CSH--HHHGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEE
T ss_pred ---eec--CcccccccchhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEE
Confidence 111 0111111146799999999888888887777 22 24456789999997
No 141
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=32.79 E-value=1.4e+02 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=26.0
Q ss_pred CCCEEEEeecCCcchhHh--hhhHH---HHhccCCceEEEEeCC
Q 030760 99 GASALVVGLHDRSFLHKL--AMSHN---DISSSFNCRVLAIKQP 137 (172)
Q Consensus 99 ~~DllVmg~~~~~~~~~~--~~gs~---~i~~~~~~PVlvv~~~ 137 (172)
.+|.+++|+..-..-... -.|+- -+.++.++|++|+-+.
T Consensus 189 ~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 189 KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEecc
Confidence 599999999863321111 24442 6778889999999543
No 142
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.74 E-value=1.3e+02 Score=21.26 Aligned_cols=66 Identities=5% Similarity=0.004 Sum_probs=36.7
Q ss_pred HHHhhhhcCCcEEEEEecCCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
++.+++. +.++.+....++.. ....++.....++|-||+........... -.-+...++||+++-.
T Consensus 28 ~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~----~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 28 IAEIERL-GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPW----LQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHT-TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHH----HHHHHHTTCCEEEESC
T ss_pred HHHHHHc-CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH----HHHHHHCCCcEEEecC
Confidence 4444443 66665554444431 13455666677899998875432222211 1456667889888853
No 143
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=32.69 E-value=86 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCEEEEeecCCcchhHhhhhHH-HHhccCCceEEE-Ee
Q 030760 91 IAALVREIGASALVVGLHDRSFLHKLAMSHN-DISSSFNCRVLA-IK 135 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~~PVlv-v~ 135 (172)
+++.+.+.+.|.|++|+.+-+.+...+..-. .|-+.++.||++ .+
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEECC
Confidence 5666777899999999444443333333333 444448999999 66
No 144
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=32.38 E-value=1.5e+02 Score=23.05 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=61.2
Q ss_pred EEEEEecCCHHHHHHHHHHHHhhccCCC---------E-----EEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 030760 5 KIVVIVEDVDAARAALLWALQNLLRFGD---------V-----VTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICN 70 (172)
Q Consensus 5 ~Ilv~~d~s~~s~~al~~a~~la~~~~~---------~-----l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (172)
+|-|.+.-...+....+.|.++.+..|. . =.++|+.-+..++... ... .+.+.+.+.
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~-~tt--------I~~I~~~a~ 84 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNI-DSA--------INKIVKLAD 84 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGH-HHH--------HHHHHGGGG
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHH-HHH--------HHHHHHHhh
Confidence 5677776554555555555555544442 0 2477775554443321 011 112233333
Q ss_pred hhcCCcEEEEEec--CCchHHHHHHHHHHhCCCEEEEeecCCcchhH------------hhhhH----HHHhccCCceEE
Q 030760 71 DFFNTNVEIIVTE--GDQEGARIAALVREIGASALVVGLHDRSFLHK------------LAMSH----NDISSSFNCRVL 132 (172)
Q Consensus 71 ~~~~~~~~~~~~~--g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~------------~~~gs----~~i~~~~~~PVl 132 (172)
...+...+.. .... ...++.+++..+|.|+++......... ...|. .+++..-+.-+.
T Consensus 85 ---~~gyk~II~n~~~~~~-~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia 160 (371)
T 3qi7_A 85 ---DKEVQAIVVSTDQAGL-LPALQKVKEKRPEIITISAPMGDDKNQLSQFVDVNLGVSAEERGKVLAERSKEMGAKAFI 160 (371)
T ss_dssp ---CTTEEEEEEECSSCCC-HHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSEEEECCHHHHHHHHHHHHHHTTCSCEE
T ss_pred ---cCCCeEEEEECCCcch-HHHHHHHHhcCCCEEEEeccccccchhhcccCceEEEeChHHHHHHHHHHHHHCCCCEEE
Confidence 3334444433 2222 667888999999988877643332111 11222 277777777777
Q ss_pred EEeCC
Q 030760 133 AIKQP 137 (172)
Q Consensus 133 vv~~~ 137 (172)
.+.-+
T Consensus 161 ~Isgp 165 (371)
T 3qi7_A 161 HYAST 165 (371)
T ss_dssp EEEET
T ss_pred EEecc
Confidence 66533
No 145
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=31.59 E-value=2.1e+02 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~ 43 (172)
+++++++.+.-+|..++.++.+. .|..++++|+....
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g~ 264 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNGL 264 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 68999999999999888777653 25679999998653
No 146
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=31.44 E-value=1.4e+02 Score=21.09 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=42.0
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEec
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
.++.++.|+... ..+++.+-++ +..+..++|-.. .+....... ++.+.+.+++.++-.-+..
T Consensus 6 ~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikvg~~----------lf~~~G~~~---v~~l~~~~p~~~iflDlKl 67 (221)
T 3exr_A 6 PNLQVALDHSNL-KGAITAAVSV----GNEVDVIEAGTV----------CLLQVGSEL---VEVLRSLFPDKIIVADTKC 67 (221)
T ss_dssp CEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEECHH----------HHHHHCTHH---HHHHHHHCTTSEEEEEEEE
T ss_pred CCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEECHH----------HHHhcCHHH---HHHHHHhCCCCcEEEEEEe
Confidence 479999999764 4444544443 333455666322 111111111 2222222233333333322
Q ss_pred CCchHHHHHHHHHHhCCCEEEEeec
Q 030760 84 GDQEGARIAALVREIGASALVVGLH 108 (172)
Q Consensus 84 g~~~~~~I~~~a~~~~~DllVmg~~ 108 (172)
.+.. +...+.+.+.++|++.+-..
T Consensus 68 ~Dip-~t~~~~~~~~Gad~vtVH~~ 91 (221)
T 3exr_A 68 ADAG-GTVAKNNAVRGADWMTCICS 91 (221)
T ss_dssp CSCH-HHHHHHHHTTTCSEEEEETT
T ss_pred eccH-HHHHHHHHHcCCCEEEEecc
Confidence 3443 66666677778888776443
No 147
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.56 E-value=90 Score=18.70 Aligned_cols=47 Identities=4% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+..++.+++..+|++++...-.. ..++-+ -..+-...++|++++...
T Consensus 36 ~~al~~~~~~~~dlii~D~~~p~-~~g~~~-~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIMLPN-KDGVEV-CREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTSTT-THHHHH-HHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHhhCCCCEEEEeCCCCC-CCHHHH-HHHHHhcCCCCEEEEECC
Confidence 55667778888999999876443 121111 114444557899888643
No 148
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=30.15 E-value=1.7e+02 Score=21.88 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=46.9
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+||+|-+.++..+-.++-++.+.- ..+++|.++-...+.. +.++.++ ++++...-.
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~Visn~~~~---------------------~~~A~~~-gIp~~~~~~ 161 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHSD-ELDCDIACVISNHQDL---------------------RSMVEWH-DIPYYHVPV 161 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEEEESSSTT---------------------HHHHHTT-TCCEEECCC
T ss_pred CcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEEEECcHHH---------------------HHHHHHc-CCCEEEcCC
Confidence 4678888887765544444443322 2345555544433310 2223333 666544321
Q ss_pred cC--C-chHHHHHHHHHHhCCCEEEEeecC
Q 030760 83 EG--D-QEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 83 ~g--~-~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
.. . ...+.+++..++.++|++|+..-.
T Consensus 162 ~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 162 DPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 21 1 123579999999999999998654
No 149
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=30.12 E-value=1e+02 Score=22.32 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+++...+.++|+|.+|-...-..+..+ --..-+++.++|++++..-
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~~-~~v~~ir~~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNVL-RMMSKVRRFLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHHH-HHHHHHTTSSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH-HHHHHhhCcCCCEEEecCc
Confidence 45677888889999999975333344322 1223334478999998754
No 150
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.95 E-value=1.6e+02 Score=21.33 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHhhhhcCCcEEEEEecCCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 65 FKDICNDFFNTNVEIIVTEGDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+++.+++. +.++.+....++.. ....++.....++|-||+...........+ .-+....+||+++-..
T Consensus 25 i~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~----~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 25 IVKQLQEA-GYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVL----KQAGEQGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHT-TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHH----HHHHHTTCEEEEESSC
T ss_pred HHHHHHHc-CCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHH----HHHHHCCCCEEEECCC
Confidence 34444443 66666655554442 124455556678999999766543322211 4566789999998543
No 151
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.53 E-value=92 Score=18.48 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhc---cCCceEEEE
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAI 134 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~---~~~~PVlvv 134 (172)
+...+..++..+|++++...-......+-+ -..+-. ...+|++++
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~-~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGYLI-CGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHHHH-HHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHHHH-HHHHhcCccccCCCEEEE
Confidence 555666777789999998764411111100 013332 356899888
No 152
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=29.52 E-value=1.7e+02 Score=21.65 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=47.4
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+||+|-+.++..+-.++-++.+.- ..+++|.++-...+.. +.++.++ ++++...-.
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~~~~---------------------~~~A~~~-gIp~~~~~~ 146 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRIG-QLGMDVVAVVSNHPDL---------------------EPLAHWH-KIPYYHFAL 146 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHTT-SSCCEEEEEEESSSTT---------------------HHHHHHT-TCCEEECCC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHCC-CCCcEEEEEEeCcHHH---------------------HHHHHHc-CCCEEEeCC
Confidence 3578888887765555544443322 2345555544433311 2223333 666554322
Q ss_pred cCCc---hHHHHHHHHHHhCCCEEEEeecCC
Q 030760 83 EGDQ---EGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 83 ~g~~---~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
.... ..+.+++..++.++|++|+..-.+
T Consensus 147 ~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 147 DPKDKPGQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp BTTBHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 2111 125789999999999999986543
No 153
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=29.09 E-value=40 Score=21.49 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH--HHhccCCceEEEEe
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHN--DISSSFNCRVLAIK 135 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~--~i~~~~~~PVlvv~ 135 (172)
+.-++.+++..+|++++-.+=.. +.|-+ ..+++.++||+++.
T Consensus 43 ~eAl~~~~~~~~DlvllDi~mP~-----~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNLDG-----EPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSSSS-----CCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHHHhCCCCEEEEecCCCC-----CCHHHHHHHHHcCCCCEEEEe
Confidence 55667788899999999876443 12221 45566789998885
No 154
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=28.85 E-value=1.8e+02 Score=21.65 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=48.0
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+||+|-+.++..+-.++-++.+.- ..+++|.++-...+.. +.++.++ ++++...-.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~~~~---------------------~~~A~~~-gIp~~~~~~ 151 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVGIVSNHPDF---------------------APLAAQH-GLPFRHFPI 151 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEESSSTT---------------------HHHHHHT-TCCEEECCC
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEEEEeCcHHH---------------------HHHHHHc-CCCEEEeCC
Confidence 4688888888765555555444332 2345555543333211 1223333 666654322
Q ss_pred cCCc---hHHHHHHHHHHhCCCEEEEeecCC
Q 030760 83 EGDQ---EGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 83 ~g~~---~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
.... ..+.+++..++.++|++|+..-.+
T Consensus 152 ~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 152 TADTKAQQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEecCchh
Confidence 2111 125799999999999999986543
No 155
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.73 E-value=1.6e+02 Score=20.86 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=48.6
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
++||.|-+.++-.+-.++-.+.+.- ..+++|.+|-...+.. ...+.+.+. ++++.....
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~-~l~~eI~~Visn~~~a-------------------~v~~~A~~~-gIp~~~~~~ 60 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAG-QLPCEVALLITDKPGA-------------------KVVERVKVH-EIPVCALDP 60 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTT-CCSSEEEEEEESCSSS-------------------HHHHHHHTT-TCCEEECCG
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcC-CCCcEEEEEEECCCCc-------------------HHHHHHHHc-CCCEEEeCh
Confidence 4688888888755554444444322 2345666654432211 123344443 666543322
Q ss_pred c--CC--chHHHHHHHHHHhCCCEEEEeecCC
Q 030760 83 E--GD--QEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 83 ~--g~--~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
. .+ ...+.+.+..++.++|++|+..-++
T Consensus 61 ~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 61 KTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hhcCchhhhHHHHHHHHHhcCCCEEEEeCchh
Confidence 1 11 1136889999999999999986543
No 156
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=28.39 E-value=57 Score=24.88 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=30.1
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~ 38 (172)
++|+++.|+++....+...+++.....|..+.++.
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~ 230 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ 230 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 68999999999999999999998887787777653
No 157
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=28.33 E-value=77 Score=25.76 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHH
Q 030760 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~-~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~ 92 (172)
+.+++.+++|+++|... ..+|+++|=.+--.. .. ..+ .+.+++..+++|+++++...++.-. -.++
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~---sd-Glf-------r~v~~eVa~eYPdI~~e~~~VD~~a--mqLV 231 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATKSNIMKL---AE-GTL-------KRAFEQVAQEYPDIEAVHIIVDNAA--HQLV 231 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTT---HH-HHH-------HHHHHHHHTTCTTSEEEEEEHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCCchhh---HH-HHH-------HHHHHHHHHHCCCceEEEEeHHHHH--HHHh
Confidence 66889999999999877 577888886544221 11 111 1223455556788888877665332 2233
Q ss_pred HHHHHhCCCEEEEee
Q 030760 93 ALVREIGASALVVGL 107 (172)
Q Consensus 93 ~~a~~~~~DllVmg~ 107 (172)
.. -.+.|.||+..
T Consensus 232 ~~--P~~FDVIVt~N 244 (496)
T 2d1c_A 232 KR--PEQFEVIVTTN 244 (496)
T ss_dssp HC--GGGCSEEEECH
T ss_pred hC--cCcceEEEECC
Confidence 32 34578777653
No 158
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=28.23 E-value=1.1e+02 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.2
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhh---ccCCCEEEEEEE
Q 030760 4 KKIVVIVEDVDAARAALLWALQNL---LRFGDVVTLLHV 39 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la---~~~~~~l~~l~V 39 (172)
++|+++.|.++..+.+...+.+.+ ...|..+.++..
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~l 245 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFL 245 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 689999999999999999888873 344667766544
No 159
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.85 E-value=1.8e+02 Score=21.34 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHhCCCEEEEeecCCc
Q 030760 85 DQEGARIAALVREIGASALVVGLHDRS 111 (172)
Q Consensus 85 ~~~~~~I~~~a~~~~~DllVmg~~~~~ 111 (172)
-+ .+.|++.++++++|+|.+...-..
T Consensus 167 vp-~e~iv~aa~e~~~d~VglS~l~t~ 192 (262)
T 1xrs_B 167 VA-NEDFIKKAVELEADVLLVSQTVTQ 192 (262)
T ss_dssp BC-HHHHHHHHHHTTCSEEEEECCCCT
T ss_pred CC-HHHHHHHHHHcCCCEEEEEeecCC
Confidence 35 499999999999999999887665
No 160
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.58 E-value=1.9e+02 Score=21.57 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=34.5
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHh-ccCCceEEEEeCC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDIS-SSFNCRVLAIKQP 137 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~-~~~~~PVlvv~~~ 137 (172)
..++++. +.++..........+..+...+...++|+||.... -+.+..... .++ ....+|+.+++-.
T Consensus 48 ~~~L~~~-g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTv~~v~~---~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 48 LIKLEKA-GYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTLNEVVN---GIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHT-TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHHHHHHH---HHTTCSSCCEEEEEECS
T ss_pred HHHHHHc-CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chHHHHHHH---HHHhCCCCCcEEEecCC
Confidence 4444433 56666655444322355555555567887776532 222332221 222 4567899998854
No 161
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=26.93 E-value=1.1e+02 Score=18.71 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhc-cCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS-SFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~-~~~~PVlvv~~~ 137 (172)
+..++..++..+|+|++.. -.. ...+-+- ..+-. ...+|++++...
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~-~~g~~~~-~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEG-EESLNLI-RRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTT-HHHHHHH-HHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHhccCCCEEEEeC-CCC-CcHHHHH-HHHHHHCCCCCEEEEECC
Confidence 5555666777888888887 322 2211110 12222 235888887643
No 162
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=26.41 E-value=1.3e+02 Score=19.27 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+..++.+++..+|+|++...-.. ..++-+ -..+-...++|++++-..
T Consensus 61 ~~al~~l~~~~~dlvilD~~l~~-~~g~~l-~~~lr~~~~~~ii~~s~~ 107 (164)
T 3t8y_A 61 LEAVEKAIELKPDVITMDIEMPN-LNGIEA-LKLIMKKAPTRVIMVSSL 107 (164)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCHHHH-HHHHHHHSCCEEEEEESS
T ss_pred HHHHHHhccCCCCEEEEeCCCCC-CCHHHH-HHHHHhcCCceEEEEecC
Confidence 55666777888999999976543 111111 114445556899888643
No 163
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.22 E-value=2.1e+02 Score=21.49 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=26.6
Q ss_pred HHHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCC
Q 030760 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
+++++.+. ++.+- ....-. .+++.+..++.++|++|+..-++
T Consensus 50 v~~~A~~~-gIpv~--~~~~~~-~~~~~~~l~~~~~Dliv~~~~~~ 91 (314)
T 3tqq_A 50 VKEIARQN-EIPII--QPFSLR-DEVEQEKLIAMNADVMVVVAYGL 91 (314)
T ss_dssp HHHHHHHT-TCCEE--CCSCSS-SHHHHHHHHTTCCSEEEEESCCS
T ss_pred HHHHHHHc-CCCEE--CcccCC-CHHHHHHHHhcCCCEEEEcCccc
Confidence 45555554 66642 222222 25788899999999999986653
No 164
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=26.19 E-value=1.4e+02 Score=22.85 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCEEEEeecCC--cchhHhhhhH-HHHhccCCceEEEEeC
Q 030760 89 ARIAALVREIGASALVVGLHDR--SFLHKLAMSH-NDISSSFNCRVLAIKQ 136 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~--~~~~~~~~gs-~~i~~~~~~PVlvv~~ 136 (172)
.+.++.+++ +|+||+|...- |-+--++... ..-++++++|++.+.+
T Consensus 180 p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~Ai~~s~A~kV~V~N 228 (341)
T 2p0y_A 180 QPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICN 228 (341)
T ss_dssp HHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECC
T ss_pred HHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHHHHhCCCCEEEEeC
Confidence 556666655 89999998763 3333333322 2678889999999975
No 165
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=26.02 E-value=92 Score=24.30 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=29.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~ 38 (172)
++|+++.|.+...+.+...+.+.....|..+.++.
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~ 322 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVY 322 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 68999999999999998888888877787777653
No 166
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=25.36 E-value=2.5e+02 Score=22.14 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=54.7
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
-|++++..|. ..++..+..+. ..|.++..+...... ... .+.++++.+..++ ....+.
T Consensus 312 gkrv~i~~~~----~~~~~l~~~L~-elG~~vv~v~~~~~~--------~~~-------~~~~~~ll~~~~~--~~~~v~ 369 (458)
T 1mio_B 312 GKKVALLGDP----DEIIALSKFII-ELGAIPKYVVTGTPG--------MKF-------QKEIDAMLAEAGI--EGSKVK 369 (458)
T ss_dssp TCEEEEEECH----HHHHHHHHHHH-TTTCEEEEEEESSCC--------HHH-------HHHHHHHHHTTTC--CSCEEE
T ss_pred CCEEEEEcCc----hHHHHHHHHHH-HCCCEEEEEEeCCCC--------HHH-------HHHHHHHHHhcCC--CCCEEE
Confidence 3677777764 23333333333 577766665554431 111 1122333333211 223455
Q ss_pred cCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 83 ~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
.+... ..+.+.+++.++|+++-+++. + ++.++..+|.+-+.
T Consensus 370 ~~~d~-~~l~~~i~~~~pDl~ig~~~~-----~------~~a~k~gip~~~~~ 410 (458)
T 1mio_B 370 VEGDF-FDVHQWIKNEGVDLLISNTYG-----K------FIAREENIPFVRFG 410 (458)
T ss_dssp ESCBH-HHHHHHHHHSCCSEEEESGGG-----H------HHHHHHTCCEEECS
T ss_pred ECCCH-HHHHHHHHhcCCCEEEeCcch-----H------HHHHHcCCCEEEee
Confidence 55554 789999999999999955431 1 45566678887663
No 167
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.19 E-value=1.5e+02 Score=20.04 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=5.2
Q ss_pred EEEEeecCCc
Q 030760 102 ALVVGLHDRS 111 (172)
Q Consensus 102 llVmg~~~~~ 111 (172)
+.|.|-|...
T Consensus 67 ~~v~GNHD~~ 76 (228)
T 1uf3_A 67 AYVPGPQDAP 76 (228)
T ss_dssp EEECCTTSCS
T ss_pred EEECCCCCch
Confidence 4455555543
No 168
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=25.11 E-value=1.6e+02 Score=22.49 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCEEEEeecCC--cchhHhhhhH-HHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDR--SFLHKLAMSH-NDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~--~~~~~~~~gs-~~i~~~~~~PVlvv~~~ 137 (172)
.+.++.+++ +|+||+|.... |-+--+.... ..-++++++|++.+.+-
T Consensus 169 p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 169 NEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNV 218 (332)
T ss_dssp HHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCS
T ss_pred HHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCC
Confidence 566666655 89999998763 3333333322 26688899999999754
No 169
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.07 E-value=1.9e+02 Score=20.61 Aligned_cols=66 Identities=15% Similarity=0.057 Sum_probs=40.3
Q ss_pred HHHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+++.+.+. +..+......+......+.+.....++|-||+....... . .-..+...++||+++-..
T Consensus 32 i~~~a~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~----~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 32 IGIELGKR-GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--F----RLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHT-TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--H----HHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHC-CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--H----HHHHHHhCCCCEEEECCC
Confidence 34444443 666655544432223678888888899999987654432 1 114566778999988543
No 170
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=24.91 E-value=53 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=28.3
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~ 40 (172)
-+.+++.+..|.++...++ +++.++..|+++..+.-.
T Consensus 113 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 3568899999888888876 667788888888777543
No 171
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.70 E-value=2e+02 Score=20.73 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=36.9
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhcc--CCceEEEE
Q 030760 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS--FNCRVLAI 134 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~--~~~PVlvv 134 (172)
|.++...-.. -+. +.+++.+++.++|+|.+..........+ .--...++. .++||++-
T Consensus 151 G~~Vi~LG~~-vp~-e~l~~~~~~~~~d~V~lS~l~~~~~~~~-~~~i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 151 GYNVVDLGRD-VPA-EEVLAAVQKEKPIMLTGTALMTTTMYAF-KEVNDMLLENGIKIPFACG 210 (258)
T ss_dssp TCEEEEEEEE-CCS-HHHHHHHHHHCCSEEEEECCCTTTTTHH-HHHHHHHHTTTCCCCEEEE
T ss_pred CCEEEECCCC-CCH-HHHHHHHHHcCCCEEEEEeeccCCHHHH-HHHHHHHHhcCCCCcEEEE
Confidence 6666544444 454 9999999999999999998755444321 111133333 34888875
No 172
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.49 E-value=1.6e+02 Score=19.67 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=26.4
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHH----HhCCCEEEEee
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVR----EIGASALVVGL 107 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~----~~~~DllVmg~ 107 (172)
.+++.+. +.++....+-++.. +.|.+..+ ..++|+|+..-
T Consensus 46 ~~~L~~~-G~~v~~~~iV~Dd~-~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 46 KQLLIEN-GHKIIGYSLVPDDK-IKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHT-TCEEEEEEEECSCH-HHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHC-CCEEEEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEecC
Confidence 3334443 88888888878875 77766554 34689888643
No 173
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.49 E-value=1.3e+02 Score=18.48 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=32.3
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
++.+++. ++++++....-... +. . ..++|+|+.+..-....+++ .......++||.++.+
T Consensus 25 ~~~~~~~-gi~~~i~~~~~~~~-~~---~--~~~~D~Ii~t~~l~~~~~~~----~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 25 EKYAKSK-NINATIEAIAETRL-SE---V--VDRFDVVLLAPQSRFNKKRL----EEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHH-TCSEEEEEECSTTH-HH---H--TTTCSEEEECSCCSSHHHHH----HHHHHHHTCCEEECCH
T ss_pred HHHHHHC-CCCeEEEEecHHHH-Hh---h--cCCCCEEEECCccHHHHHHH----HHHhcccCCCEEEECh
Confidence 4444443 66666554443333 22 2 25699999987654433321 1233344678888764
No 174
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=24.32 E-value=74 Score=23.35 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEE
Q 030760 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv 134 (172)
+.++.++.++|+||+.+..-+.+- +.+-...++||+=+
T Consensus 91 ~~~~L~~~Gad~IVIaCNTah~~l------~~lr~~~~iPvigi 128 (268)
T 3s81_A 91 YLHMLEDAGAECIVIPCNTAHYWF------DDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHTTCSEEECSCSGGGGGH------HHHHHHCSSEEECH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHH------HHHHHHCCCCEEcc
Confidence 344555789999999998754321 14445567777654
No 175
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.20 E-value=56 Score=22.16 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=27.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~ 40 (172)
-+.+++.+..|.++...++ +++.++..|+++..+.-.
T Consensus 109 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 3568888888888777776 556777778887776544
No 176
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=24.14 E-value=1.4e+02 Score=21.41 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.++.+.+.+.|+|.+|-+..-..+. +..-..-++..+.|+++.+..
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~-~~~~v~~ik~~~~Pvvlfp~~ 68 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDN-VLRMMSKVRRFLVPCVLEVSA 68 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHH-HHHHHHHHTTSSSCEEEECSC
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHH-HHHHHHHhhccCCCEEEeCCC
Confidence 4455568889999999876443443 222224455589999998755
No 177
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=24.09 E-value=2e+02 Score=20.67 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=29.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
.++++|++.+.-+|..++.++.+.. +..++.+|+...
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~~ 61 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPSS 61 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCCS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCCC
Confidence 5789999999999998888877654 346888888754
No 178
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=23.91 E-value=1.2e+02 Score=23.70 Aligned_cols=52 Identities=8% Similarity=-0.073 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhH--HHHhccCCceEEEEeCCCC
Q 030760 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSH--NDISSSFNCRVLAIKQPAA 139 (172)
Q Consensus 88 ~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs--~~i~~~~~~PVlvv~~~~~ 139 (172)
.+.+.+.+++.++|-||.-.............. ..+.+...+|+|.+.-+..
T Consensus 323 ~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 323 TKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 478888999999999998888776554432222 2556888999999975533
No 179
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.72 E-value=1.1e+02 Score=18.83 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=30.2
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~ 42 (172)
|..+|||++-...-.+.-.++...+.+...|-++.+-|+...
T Consensus 1 M~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~ 42 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPET 42 (106)
T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSS
T ss_pred CCCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHH
Confidence 667888888866545447777788888888877776666544
No 180
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=23.65 E-value=2e+02 Score=20.46 Aligned_cols=79 Identities=8% Similarity=-0.000 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCchHHHHHHH
Q 030760 15 AARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL 94 (172)
Q Consensus 15 ~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~ 94 (172)
.+...++.++++|...|++..++|.-..+.. . . +..+. ..+....+.+.+++. ++.+-++... ... +.+.+.
T Consensus 99 ~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~-~-~--~~~~~-~~~~l~~l~~~a~~~-Gv~l~lE~~~-~~~-~~~~~l 170 (290)
T 3tva_A 99 SRVAEMKEISDFASWVGCPAIGLHIGFVPES-S-S--PDYSE-LVRVTQDLLTHAANH-GQAVHLETGQ-ESA-DHLLEF 170 (290)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCCCCCT-T-S--HHHHH-HHHHHHHHHHHHHTT-TCEEEEECCS-SCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCCccc-c-h--HHHHH-HHHHHHHHHHHHHHc-CCEEEEecCC-CCH-HHHHHH
Confidence 4567788999999999999888875422211 1 1 11111 112222333333333 6655544433 343 778888
Q ss_pred HHHhCCC
Q 030760 95 VREIGAS 101 (172)
Q Consensus 95 a~~~~~D 101 (172)
+++.+.+
T Consensus 171 ~~~~~~~ 177 (290)
T 3tva_A 171 IEDVNRP 177 (290)
T ss_dssp HHHHCCT
T ss_pred HHhcCCC
Confidence 8887543
No 181
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.55 E-value=1.3e+02 Score=18.32 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHh---ccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDIS---SSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~---~~~~~PVlvv~~~ 137 (172)
+..++.+++..+|+|++...-.. ...+-+- ..+- ....+|++++...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~-~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPD-QDGVSLI-RALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCHHHHH-HHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHHHHH-HHHHhCcccCCCCEEEEecC
Confidence 56667778888999999876443 1111010 1222 2357899998643
No 182
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=23.50 E-value=1.7e+02 Score=19.54 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHh----CCCEEEEe
Q 030760 74 NTNVEIIVTEGDQEGARIAALVREI----GASALVVG 106 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~I~~~a~~~----~~DllVmg 106 (172)
+.++.....-++.. +.|.+..++. ++|+||..
T Consensus 44 G~~v~~~~iv~Dd~-~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 44 GHKVTSYEIVKDDK-ESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp TCEEEEEEEECSSH-HHHHHHHHHHHTCTTCSEEEEE
T ss_pred CCeEeEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEEc
Confidence 77777776677775 7777666542 78998864
No 183
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.49 E-value=2.2e+02 Score=20.89 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=37.0
Q ss_pred CCcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+.+-..+...+.. +. ..+.|++.++|.+.+...-... .+.+.-=-..|...++.|+++...+
T Consensus 70 r~pviaGvg~~~t~-~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (292)
T 2ojp_A 70 RIPVIAGTGANATA-EAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVP 136 (292)
T ss_dssp SSCEEEECCCSSHH-HHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCH
T ss_pred CCcEEEecCCccHH-HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444444333332 43 3556677899999887765432 2221111137888999999998754
No 184
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=23.21 E-value=1.8e+02 Score=22.18 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCEEEEeecCC--cchhHhhhhH-HHHhccCCceEEEEeC
Q 030760 89 ARIAALVREIGASALVVGLHDR--SFLHKLAMSH-NDISSSFNCRVLAIKQ 136 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~--~~~~~~~~gs-~~i~~~~~~PVlvv~~ 136 (172)
.+.++.+++ +|+||+|...- |-+--++... ..-++++++|++.+.+
T Consensus 176 p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~Ai~~s~A~kV~v~N 224 (326)
T 2q7x_A 176 RRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCN 224 (326)
T ss_dssp SHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECC
T ss_pred HHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHHHHhccCceEEecc
Confidence 556666655 89999998763 3333333322 2678889999999975
No 185
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=23.19 E-value=2.4e+02 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhcc--CCceEEEE
Q 030760 85 DQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS--FNCRVLAI 134 (172)
Q Consensus 85 ~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~--~~~PVlvv 134 (172)
-+ .+.|++.+++.++|+|.+..........+- .-..-++. ..+||+|-
T Consensus 136 vP-~e~iv~aa~~~~~diVgLS~l~t~~~~~m~-~~i~~Lr~~g~~i~ViVG 185 (579)
T 3bul_A 136 VP-AEKILRTAKEVNADLIGLSGLITPSLDEMV-NVAKEMERQGFTIPLLIG 185 (579)
T ss_dssp BC-HHHHHHHHHHHTCSEEEEECCSTHHHHHHH-HHHHHHHHTTCCSCEEEE
T ss_pred CC-HHHHHHHHHHcCCCEEEEEecCCCCHHHHH-HHHHHHHHcCCCCeEEEE
Confidence 45 499999999999999999987655443211 11122222 35888775
No 186
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=23.06 E-value=2.3e+02 Score=20.84 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=38.7
Q ss_pred CCcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+.+-.-+...+.. +. ..+.|++.++|.+++...-... .+.+.-=-..|...++.||++...+
T Consensus 69 r~pviaGvg~~~t~-~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 69 RVPVIAGAGSNSTA-EAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp SSCBEEECCCSSHH-HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCcEEEecCCccHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34454444443332 44 4677888999999888765432 2221111137888899999998754
No 187
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=23.04 E-value=2e+02 Score=20.27 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=17.8
Q ss_pred CCcEEEEEec-CCchHHHHHHHHHHhCCCEEEEeecC
Q 030760 74 NTNVEIIVTE-GDQEGARIAALVREIGASALVVGLHD 109 (172)
Q Consensus 74 ~~~~~~~~~~-g~~~~~~I~~~a~~~~~DllVmg~~~ 109 (172)
+.+++..-.. +... +...+..++ +|.||+++--
T Consensus 60 g~ev~~~dL~~~~Dv-~~~~~~l~~--aD~iv~~~P~ 93 (218)
T 3rpe_A 60 GHQVKITTVDQGYDI-ESEIENYLW--ADTIIYQMPA 93 (218)
T ss_dssp TCCEEEEEGGGCCCH-HHHHHHHHH--CSEEEEEEEC
T ss_pred CCEEEEEECCCccCH-HHHHHHHHh--CCEEEEECCh
Confidence 5555554443 2333 444444443 7888888754
No 188
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=23.03 E-value=2e+02 Score=20.30 Aligned_cols=49 Identities=14% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHHHHHHHh-----CCCEEEEeecCCcchhHhhhhHHHHhc--cCCceEEEEeCC
Q 030760 89 ARIAALVREI-----GASALVVGLHDRSFLHKLAMSHNDISS--SFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~-----~~DllVmg~~~~~~~~~~~~gs~~i~~--~~~~PVlvv~~~ 137 (172)
++..+|.+.. .+|++++|-...+.+..++.|+..+-. ..+..++.+..+
T Consensus 110 ~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~~~L~~~~~~~~~~~~~~~~ 165 (226)
T 3lwd_A 110 AGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSEQLATALETTSAAVVVHAP 165 (226)
T ss_dssp HHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTCTTHHHHHHCCSSEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCChhhhhhhccCCeEEecCCC
Confidence 5555555442 689999999999988988888642211 345556555433
No 189
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=22.68 E-value=1.2e+02 Score=23.95 Aligned_cols=28 Identities=7% Similarity=-0.076 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEec
Q 030760 14 DAARAALLWALQNLLRFGDVVTLLHVFP 41 (172)
Q Consensus 14 ~~s~~al~~a~~la~~~~~~l~~l~V~~ 41 (172)
+.+++.+++|+++|...+.+|+++|=.+
T Consensus 185 ~~~eRiar~AF~~A~~~~~~vt~v~KaN 212 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMNQDLWFSTKDT 212 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6688889999999877777888887543
No 190
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.66 E-value=2.1e+02 Score=20.32 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHhhhhcCCcEEEEEe-cCCch-HHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 65 FKDICNDFFNTNVEIIVT-EGDQE-GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~g~~~-~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+++.+++. +..+.+... .++.. ....++.+...++|-||+...........+ .-+...++||+++-..
T Consensus 26 i~~~a~~~-g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~----~~~~~~~iPvV~~~~~ 95 (305)
T 3g1w_A 26 FEDAAQAL-NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI----NKAVDAGIPIVLFDSG 95 (305)
T ss_dssp HHHHHHHH-TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH----HHHHHTTCCEEEESSC
T ss_pred HHHHHHHc-CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH----HHHHHCCCcEEEECCC
Confidence 34444443 666665332 33321 124556666789999998765444322211 4456679999998643
No 191
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=22.49 E-value=67 Score=22.63 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=9.3
Q ss_pred HHhCCCEEEEeecCCc
Q 030760 96 REIGASALVVGLHDRS 111 (172)
Q Consensus 96 ~~~~~DllVmg~~~~~ 111 (172)
++.++|+||+++..-+
T Consensus 70 ~~~g~d~iviaCnTa~ 85 (226)
T 2zsk_A 70 ERAGAELIAFAANTPH 85 (226)
T ss_dssp HHHTCSEEEESSSGGG
T ss_pred HHcCCCEEEECCCcHH
Confidence 3456666666666543
No 192
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=22.40 E-value=2.1e+02 Score=20.21 Aligned_cols=77 Identities=6% Similarity=-0.032 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEecC------CchHH
Q 030760 16 ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG------DQEGA 89 (172)
Q Consensus 16 s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~ 89 (172)
+...++.++++|...|++..++|....... . .++..+...+.++++++...++.+-.....+ ... +
T Consensus 87 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~---~----~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~-~ 158 (287)
T 2x7v_A 87 SVELLKKEVEICRKLGIRYLNIHPGSHLGT---G----EEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGYKL-E 158 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCEECTTS---C----HHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECSSH-H
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCCC---C----HHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCCCH-H
Confidence 455678899999999998888876543211 1 1122233344445555443366665554433 354 7
Q ss_pred HHHHHHHHhCC
Q 030760 90 RIAALVREIGA 100 (172)
Q Consensus 90 ~I~~~a~~~~~ 100 (172)
.+.+.+++.+.
T Consensus 159 ~~~~l~~~~~~ 169 (287)
T 2x7v_A 159 QLKKIRDLVDQ 169 (287)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHhcCC
Confidence 78888888653
No 193
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=22.38 E-value=2.4e+02 Score=20.78 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 91 IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+.|++.++|.+.+...-... .+.+.-==..|...++.||+++..+
T Consensus 87 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIP 135 (294)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4677888999999888765432 2221111137888899999999755
No 194
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=22.32 E-value=1.6e+02 Score=22.13 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEE
Q 030760 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (172)
Q Consensus 84 g~~~~~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv 134 (172)
|.+. +.-.+.....++|.||+=...++..+ .+.+++.+||+=-
T Consensus 78 gEsl-~DTarvLs~~~~D~iviR~~~~~~~~-------~la~~~~vPVINa 120 (304)
T 3r7f_A 78 GETL-YDTIRTLESIGVDVCVIRHSEDEYYE-------ELVSQVNIPILNA 120 (304)
T ss_dssp SSCH-HHHHHHHHHHTCCEEEEECSSTTCHH-------HHHHHCSSCEEES
T ss_pred CCCH-HHHHHHHHHhcCCEEEEecCChhHHH-------HHHHhCCCCEEeC
Confidence 4443 34444445667899999887766655 4567788886543
No 195
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=22.28 E-value=2e+02 Score=20.75 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeCC
Q 030760 90 RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 90 ~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..++.+.+.+.|+|.+|-+..-..+. ...-..-++..+.|+++.+..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~-~~~~v~~ik~~~~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDN-VIHLMSKIRRYPLPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHH-HHHHHHHHTTSCSCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHH-HHHHHHHhcCcCCCEEEecCC
Confidence 45555678899999999866444443 222224455589999998754
No 196
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.25 E-value=2.6e+02 Score=21.21 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=38.5
Q ss_pred CCcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+.+-.-+...+.. +. ..+.|++.++|.+.+..--... .+.+.-=-..|...++.||+++..+
T Consensus 100 rvpViaGvg~~st~-eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 100 RVPVLIGTGGTNAR-ETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp SSCEEEECCSSCHH-HHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CCcEEEecCCCCHH-HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444444433332 44 4677888999999888765432 2221111137888999999999755
No 197
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.20 E-value=67 Score=21.53 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=27.2
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~ 40 (172)
+-+.+++.+..+.++...++ +++.++..|+++.++.-.
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVA-ALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHH-HHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEeCC
Confidence 34678889988877777665 556677778877777654
No 198
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.16 E-value=2.4e+02 Score=20.74 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 91 IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+.|++.++|.+.+...-... .+.+.-=-..|...++.||+++..+
T Consensus 91 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 139 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIP 139 (293)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECc
Confidence 4677888999999888765432 2221111137888889999999754
No 199
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.91 E-value=2.6e+02 Score=21.08 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=38.2
Q ss_pred CcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcch--hHhhhhHHHHhccCCceEEEEeCC
Q 030760 75 TNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFL--HKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 75 ~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~~--~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+.+-.-+...+.. +. ..+.|++.++|.+.+...-.... +.++-==..|...++.||+++..+
T Consensus 104 vpViaGvg~~st~-eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 169 (332)
T 2r8w_A 104 RTLMAGIGALRTD-EAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNP 169 (332)
T ss_dssp SEEEEEECCSSHH-HHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCH
T ss_pred CcEEEecCCCCHH-HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4444444433332 44 46778889999998887654322 221111137888899999998754
No 200
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=21.77 E-value=2.5e+02 Score=20.83 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcch--hHhhhhHHHHhccCCceEEEEeCC
Q 030760 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFL--HKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~~--~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+.+-.-+...+.. +. ..+.|++.++|.+.+...-.... +.+.-=-..|...++.||+++..+
T Consensus 81 rvpViaGvg~~st~-~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (306)
T 1o5k_A 81 KIPVIVGAGTNSTE-KTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 147 (306)
T ss_dssp SSCEEEECCCSCHH-HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred CCeEEEcCCCccHH-HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34444444333332 44 46778889999998887654322 221111138888999999999755
No 201
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.73 E-value=2.4e+02 Score=20.67 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=37.7
Q ss_pred CCcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcch--hHhhhhHHHHhccCCceEEEEeCC
Q 030760 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFL--HKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 74 ~~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~~--~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
.+.+-..+...+.. +. ..+.|++.++|.+.+...-.... +.+.-==..|...++.||+++..+
T Consensus 70 r~pvi~Gvg~~~t~-~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 70 RIPVIAGTGSNNTA-ASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp SSCEEEECCCSSHH-HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH
T ss_pred CCcEEEeCCcccHH-HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444444433332 43 46778889999999887654322 221100127888889999999755
No 202
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.65 E-value=1.5e+02 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=21.8
Q ss_pred EEEecCCchHHHHHHHHHHhCCCEEEEeec
Q 030760 79 IIVTEGDQEGARIAALVREIGASALVVGLH 108 (172)
Q Consensus 79 ~~~~~g~~~~~~I~~~a~~~~~DllVmg~~ 108 (172)
..+..+... +.+.+.+++.++|+++-|++
T Consensus 358 ~~v~~~~d~-~e~~~~i~~~~pDliig~~~ 386 (437)
T 3aek_A 358 TALTEGQDL-EAQLDRHEAINPDLTVCGLG 386 (437)
T ss_dssp CEEEEECCH-HHHHHHHHHHCCSEEEECHH
T ss_pred CEEEeCCCH-HHHHHHHhccCCCEEEeCCc
Confidence 345556554 67779999999999997754
No 203
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=21.64 E-value=1.8e+02 Score=22.09 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCEEEEeecCC--cchhHhhhhH-HHHhccCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDR--SFLHKLAMSH-NDISSSFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~--~~~~~~~~gs-~~i~~~~~~PVlvv~~~ 137 (172)
.+.++.+++ +|+||+|.... |-+--+.... ..-++++++|++.+.+-
T Consensus 170 p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 170 REGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNV 219 (323)
T ss_dssp HHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCC
Confidence 566666665 89999998763 2222222222 26688899999999754
No 204
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.63 E-value=2.5e+02 Score=20.79 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=46.3
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC-CccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL-NSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+||+|-+.++..+-.++-++.+.- ..+++| .-|+... .. ++.+++++ ++++...-
T Consensus 89 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i--~~Visn~p~~-------------------~~~~A~~~-gIp~~~~~ 145 (288)
T 3obi_A 89 RRKVMLLVSQSDHCLADILYRWRVG-DLHMIP--TAIVSNHPRE-------------------TFSGFDFG-DIPFYHFP 145 (288)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTT-SSCEEE--EEEEESSCGG-------------------GSCCTTTT-TCCEEECC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHCC-CCCeEE--EEEEcCCChh-------------------HHHHHHHc-CCCEEEeC
Confidence 4678888888766555555444322 123344 3444332 11 12233333 66554432
Q ss_pred ecC-C--chHHHHHHHHHHhCCCEEEEeecCC
Q 030760 82 TEG-D--QEGARIAALVREIGASALVVGLHDR 110 (172)
Q Consensus 82 ~~g-~--~~~~~I~~~a~~~~~DllVmg~~~~ 110 (172)
... + ...+.+++..++.++|++|+..-.+
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~ 177 (288)
T 3obi_A 146 VNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 177 (288)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTCCEEEESSCCS
T ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEhhhhhh
Confidence 211 1 1225789999999999999986543
No 205
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=21.57 E-value=62 Score=26.44 Aligned_cols=38 Identities=8% Similarity=-0.071 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCHHHHHHHHHHHHhh-----ccCCCEEEEEEE
Q 030760 1 MDVKKIVVIVEDVDAARAALLWALQNL-----LRFGDVVTLLHV 39 (172)
Q Consensus 1 m~~k~Ilv~~d~s~~s~~al~~a~~la-----~~~~~~l~~l~V 39 (172)
+++|||||+ ...+-+...++.+.++. ...|-+...++-
T Consensus 38 ~~~~kvLia-nrGeia~riira~r~lg~e~~~~e~gi~~Vav~s 80 (540)
T 3glk_A 38 RVIEKVLIA-NNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVT 80 (540)
T ss_dssp CCCCEEEEC-CCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEEC
T ss_pred ccccEEEEE-CChHHHHHHHHHHHHhccccccccCCcEEEEEEc
Confidence 368999998 34566777777776653 234555555544
No 206
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=21.54 E-value=1.4e+02 Score=20.82 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHhCCCEEEEeecCC
Q 030760 96 REIGASALVVGLHDR 110 (172)
Q Consensus 96 ~~~~~DllVmg~~~~ 110 (172)
.+.++|.||+++..-
T Consensus 72 ~~~g~d~iviaCnta 86 (228)
T 2eq5_A 72 EREGVDAIIISCAAD 86 (228)
T ss_dssp HHTTCSEEEECSTTC
T ss_pred HHCCCCEEEEeCCch
Confidence 456788888888655
No 207
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.52 E-value=1.9e+02 Score=19.23 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=24.4
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHHh----CCCEEEEe
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVREI----GASALVVG 106 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~----~~DllVmg 106 (172)
..++.+. +.++.....-.+.. +.|.+..++. ++|+||..
T Consensus 27 ~~~l~~~-G~~v~~~~iv~Dd~-~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 27 REVLAGG-PFEVAAYELVPDEP-PMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHTTS-SEEEEEEEEECSCH-HHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHC-CCeEeEEEEcCCCH-HHHHHHHHHHHhcCCCCEEEEc
Confidence 3344443 67777666666765 6666666542 69988864
No 208
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.36 E-value=2.5e+02 Score=20.61 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCEEEEeecCCcch--hHhhhhHHHHhccCCceEEEEeCC
Q 030760 91 IAALVREIGASALVVGLHDRSFL--HKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~~--~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+.|++.++|.+.+...-.... +.+.-==..|...++.||++...+
T Consensus 87 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (289)
T 2yxg_A 87 LSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVP 135 (289)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 46778889999998887654322 221111137888899999999755
No 209
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.18 E-value=1.7e+02 Score=18.66 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhc----cCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS----SFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~----~~~~PVlvv~~~ 137 (172)
..-++.+++..+|+|++-..=+. ..++-+- .-++ ..++||+++.-.
T Consensus 47 ~~al~~~~~~~~DlillD~~MP~-mdG~el~--~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWNMPG-MQGIDLL--KNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSS-SCHHHHH--HHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEcCCCCC-CCHHHHH--HHHHhCCCCCCCeEEEEECC
Confidence 45566777889999999876543 2221111 2222 346899998643
No 210
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.12 E-value=1.5e+02 Score=21.50 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHhhhhcCCcEEEEEecCCchHHHHHHHHHHhCCCEEEEee
Q 030760 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGL 107 (172)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~DllVmg~ 107 (172)
++++.+. +.++.+.+-.|-.. +.+. .+.+.++|.+|+|+
T Consensus 186 r~~~~~~-~~~~~I~VDGGI~~-~ti~-~~~~aGAD~~V~GS 224 (246)
T 3inp_A 186 SKWISST-DRDILLEIDGGVNP-YNIA-EIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHH-TSCCEEEEESSCCT-TTHH-HHHTTTCCEEEESH
T ss_pred HHHHHhc-CCCeeEEEECCcCH-HHHH-HHHHcCCCEEEEeh
Confidence 4444332 55666666667664 6655 45677999999996
No 211
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.05 E-value=1.2e+02 Score=19.10 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeC
Q 030760 89 ARIAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
+.+.++++++++|.++++...... ..+++ ..+....+.|.+++.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~----~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVII----ESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHH----HHHHTTTCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH----HHHHHcCCeEEECCC
Confidence 668889999999999998654332 12211 556778899999874
No 212
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=20.73 E-value=73 Score=21.31 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=23.1
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 030760 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (172)
Q Consensus 4 k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~ 40 (172)
+.+++.+..|.++...++ +++.++..|+++..+.-.
T Consensus 111 ~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 111 KDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEEG
T ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 456777777766666654 445566667777666554
No 213
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.71 E-value=1.6e+02 Score=18.13 Aligned_cols=47 Identities=6% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhc---cCCceEEEEeCC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQP 137 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~---~~~~PVlvv~~~ 137 (172)
+..++.+++..+|+|++...-.. ...+-+ -..+-. ...+||+++...
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~~-~~g~~~-~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMPK-ISGMDL-FNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSS-SCHHHH-HHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHcCCCCEEEEcCCCCC-CCHHHH-HHHHHcCcccCCCCEEEEeCC
Confidence 56667777788999999976543 111100 013332 356999998754
No 214
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=20.60 E-value=1.4e+02 Score=20.85 Aligned_cols=41 Identities=5% Similarity=-0.082 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHH-HHhccCCceEEEE
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHN-DISSSFNCRVLAI 134 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~-~i~~~~~~PVlvv 134 (172)
..|++.|++.++-+|.++..++.+. |+- .++.+++.+-.-.
T Consensus 139 ~~Lld~A~~~naqvvll~~~~RqG~-----GnAl~vl~~agv~t~~~ 180 (189)
T 2l8b_A 139 LTLLDGAARHNVQVLITDSGQRTGT-----GSALMAMKDAGVNTYRW 180 (189)
T ss_dssp HHHHHHHHHTTCCEEEEESSTTTCS-----HHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHhcCCEEEEeCCcccccC-----CCHHHHHHhCCCceEEe
Confidence 6789999999999999999876655 544 8888888665443
No 215
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.31 E-value=2.7e+02 Score=20.58 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=38.1
Q ss_pred CcEEEEEecCCchHHH--HHHHHHHhCCCEEEEeecCCcch--hHhhhhHHHHhccCCceEEEEeCC
Q 030760 75 TNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFL--HKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 75 ~~~~~~~~~g~~~~~~--I~~~a~~~~~DllVmg~~~~~~~--~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
+.+-.-+...+.. +. ..+.|++.++|.+.+...-.... +.+.-=-..|...++.||+++..+
T Consensus 70 vpviaGvg~~~t~-~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 70 VPVIAGAGSNNPV-EAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp SCBEEECCCSSHH-HHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CeEEEccCCCCHH-HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4444444433332 44 46778889999999887654322 221111137888899999999755
No 216
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=20.29 E-value=3.8e+02 Score=22.43 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCEEEEee
Q 030760 89 ARIAALVREIGASALVVGL 107 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~ 107 (172)
+.|++.+++.++|.|+-|.
T Consensus 90 ~~i~~~a~~~~~daI~pg~ 108 (675)
T 3u9t_A 90 DRIIAAALASGAQAIHPGY 108 (675)
T ss_dssp HHHHHHHHHTTCSEEECCS
T ss_pred HHHHHHHHHhCcCEEEeCC
Confidence 6777777777777777554
No 217
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=20.24 E-value=2e+02 Score=19.11 Aligned_cols=46 Identities=7% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEeC
Q 030760 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (172)
Q Consensus 89 ~~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~~ 136 (172)
...++.+++..+|++++...-.. ..++-+ -..+-...+.|++++..
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p~-~~g~~~-~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMPR-RDGIDA-ASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSS-SCHHHH-HHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCCCC-CChHHH-HHHHHhcCCCCEEEEec
Confidence 45556677788999999876543 111100 11444445678888853
No 218
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.13 E-value=73 Score=21.23 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=24.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~ 40 (172)
-+.+++.+..+.++...++ +++.++..|+++.++.-.
T Consensus 96 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITA-LIPVLKRLHVPLICITGR 132 (183)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHTTTCCEEEEESC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEECC
Confidence 3467788877777766655 455666677777666544
No 219
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.10 E-value=2.7e+02 Score=20.60 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCEEEEeecCCcc--hhHhhhhHHHHhccCCceEEEEeCC
Q 030760 91 IAALVREIGASALVVGLHDRSF--LHKLAMSHNDISSSFNCRVLAIKQP 137 (172)
Q Consensus 91 I~~~a~~~~~DllVmg~~~~~~--~~~~~~gs~~i~~~~~~PVlvv~~~ 137 (172)
..+.|++.++|.+.+..--... .+.+.-=-..|...++.||++...+
T Consensus 103 la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 151 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIP 151 (304)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4677888999999887754322 2221111137888899999999755
No 220
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.02 E-value=2.5e+02 Score=20.25 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCEEEEeecCCcchhHhhhhHHHHhccCCceEEEEe
Q 030760 90 RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (172)
Q Consensus 90 ~I~~~a~~~~~DllVmg~~~~~~~~~~~~gs~~i~~~~~~PVlvv~ 135 (172)
..++.....++|.||+.......+...+ .-+....+||+.+-
T Consensus 51 ~~i~~li~~~vdgiii~~~~~~~~~~~~----~~a~~~gipvV~~d 92 (316)
T 1tjy_A 51 QLVNNFVNQGYDAIIVSAVSPDGLCPAL----KRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHHHTTCSEEEECCSSSSTTHHHH----HHHHHTTCEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHHHH----HHHHHCcCEEEEec
Confidence 3455555678999999876544333211 44566789999985
No 221
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=20.01 E-value=3.3e+02 Score=21.49 Aligned_cols=95 Identities=8% Similarity=0.061 Sum_probs=52.7
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEE
Q 030760 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (172)
Q Consensus 2 ~~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.++|.+-.+.++.....++...+.+.+.|..|.....++.... . ......+.++....++..+.+..
T Consensus 196 gw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~---~---------~d~~~~l~~i~~~~~~a~vii~~ 263 (496)
T 3ks9_A 196 NWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAG---E---------KSFDRLLRKLRERLPKARVVVCF 263 (496)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC---H---------HHHHHHHHHHHTTTTTTCEEEEE
T ss_pred CCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCC---H---------HHHHHHHHHHHhccCceEEEEEe
Confidence 45677777777777787777777777777777666554432111 0 01111223332222344443333
Q ss_pred ecCCchHHHHHHHHHHhCCC--EEEEeecC
Q 030760 82 TEGDQEGARIAALVREIGAS--ALVVGLHD 109 (172)
Q Consensus 82 ~~g~~~~~~I~~~a~~~~~D--llVmg~~~ 109 (172)
..+... ..+...+++.+.. ..++|+.+
T Consensus 264 ~~~~~~-~~l~~~~~~~g~~~k~~~i~s~~ 292 (496)
T 3ks9_A 264 CEGMTV-RGLLSAMRRLGVVGEFSLIGSDG 292 (496)
T ss_dssp CCHHHH-HHHHHHHHHHTCCSCCEEEECTT
T ss_pred cChHHH-HHHHHHHHHhCCCCcEEEEEech
Confidence 333343 6788888888777 45566554
No 222
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.00 E-value=91 Score=22.41 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=24.9
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHhhccCCCEEEE
Q 030760 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTL 36 (172)
Q Consensus 3 ~k~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~~ 36 (172)
+++|+++.|.++..+.+...+.+.... + .+.+
T Consensus 199 ~~~iil~~D~D~aG~~aa~~~~~~l~~-~-~v~~ 230 (255)
T 1nui_A 199 FEQIILMFDMDEAGRKAVEEAAQVLPA-G-KVRV 230 (255)
T ss_dssp BSCEEEECCSSHHHHHHHHHHHHHSCT-T-TEEE
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhccC-C-CEEE
Confidence 678999999999988888888877654 3 4443
Done!