Your job contains 1 sequence.
>030761
MAGVVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLE
TRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALG
SHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030761
(172 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156430 - symbol:AT5G56260 species:3702 "Arabi... 691 4.4e-68 1
TAIR|locus:2171397 - symbol:AT5G16450 species:3702 "Arabi... 589 2.8e-57 1
TAIR|locus:2075432 - symbol:AT3G02770 species:3702 "Arabi... 578 4.2e-56 1
TIGR_CMR|SO_4197 - symbol:SO_4197 "S-adenosylmethionine:2... 331 6.2e-30 1
UNIPROTKB|Q47VZ9 - symbol:rraA "Regulator of ribonuclease... 326 2.1e-29 1
TIGR_CMR|CPS_4374 - symbol:CPS_4374 "protein of unknown f... 326 2.1e-29 1
UNIPROTKB|P0A8R0 - symbol:rraA "ribonuclease E inhibitor ... 316 2.4e-28 1
UNIPROTKB|Q489G8 - symbol:CPS_0538 "Putative uncharacteri... 306 2.8e-27 1
TIGR_CMR|CPS_0538 - symbol:CPS_0538 "protein of unknown f... 306 2.8e-27 1
TIGR_CMR|SO_2567 - symbol:SO_2567 "S-adenosylmethionine:2... 298 1.9e-26 1
UNIPROTKB|P0A666 - symbol:rraA "Putative regulator of rib... 297 2.5e-26 1
UNIPROTKB|Q48I30 - symbol:PSPPH_2762 "Uncharacterized pro... 110 6.7e-05 1
UNIPROTKB|Q5LQS6 - symbol:SPO2412 "Aldolase, putative" sp... 107 0.00022 1
TIGR_CMR|SPO_2412 - symbol:SPO_2412 "aldolase, putative" ... 107 0.00022 1
>TAIR|locus:2156430 [details] [associations]
symbol:AT5G56260 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008428 "ribonuclease
inhibitor activity" evidence=IEA] [GO:0051252 "regulation of RNA
metabolic process" evidence=IEA] InterPro:IPR010203 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0008428 eggNOG:COG0684
Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562
EMBL:AB023029 GO:GO:0051252 HOGENOM:HOG000252803 KO:K02553
ProtClustDB:CLSN2685213 TIGRFAMs:TIGR01935 EMBL:BT010892
EMBL:BT010934 IPI:IPI00541018 RefSeq:NP_200437.1 UniGene:At.29397
ProteinModelPortal:Q9FH13 SMR:Q9FH13 IntAct:Q9FH13 PaxDb:Q9FH13
PRIDE:Q9FH13 DNASU:835725 EnsemblPlants:AT5G56260.1 GeneID:835725
KEGG:ath:AT5G56260 TAIR:At5g56260 InParanoid:Q9FH13 OMA:NIEAGTH
PhylomeDB:Q9FH13 Genevestigator:Q9FH13 GermOnline:AT5G56260
Uniprot:Q9FH13
Length = 166
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 131/167 (78%), Positives = 148/167 (88%)
Query: 6 ATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEG 65
ATAEACDSNA L+++GDLR L P+F+IYGQ R FSGP+VTLKVFEDNVLVR LET+GEG
Sbjct: 5 ATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLETKGEG 64
Query: 66 KVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLK 125
VLVIDGGGSMRCALVGGNLGQLA NNGWSGIVVNGC+RDVDEIN C +GVRALGS+PLK
Sbjct: 65 GVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGSNPLK 124
Query: 126 SNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
S KKGHG+K+VPV+I G + IRDGEWLYADSDGIL+SK+ELS+
Sbjct: 125 STKKGHGEKNVPVHIGG-----TLIRDGEWLYADSDGILISKTELSV 166
>TAIR|locus:2171397 [details] [associations]
symbol:AT5G16450 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008428 "ribonuclease
inhibitor activity" evidence=IEA] [GO:0051252 "regulation of RNA
metabolic process" evidence=IEA] InterPro:IPR010203 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AB005242 GO:GO:0008428
UniGene:At.20374 eggNOG:COG0684 Gene3D:3.50.30.40
InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562 GO:GO:0051252
HOGENOM:HOG000252803 ProtClustDB:CLSN2685213 TIGRFAMs:TIGR01935
EMBL:AK118745 EMBL:BT005566 EMBL:AY085206 IPI:IPI00522739
RefSeq:NP_197149.1 RefSeq:NP_850830.1 ProteinModelPortal:Q9FFE0
SMR:Q9FFE0 IntAct:Q9FFE0 STRING:Q9FFE0 PaxDb:Q9FFE0 PRIDE:Q9FFE0
DNASU:831506 EnsemblPlants:AT5G16450.1 EnsemblPlants:AT5G16450.2
GeneID:831506 KEGG:ath:AT5G16450 TAIR:At5g16450 InParanoid:Q9FFE0
OMA:ELCDIYH PhylomeDB:Q9FFE0 Genevestigator:Q9FFE0
GermOnline:AT5G16450 Uniprot:Q9FFE0
Length = 166
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 112/168 (66%), Positives = 135/168 (80%)
Query: 5 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGE 64
V TAE CD+N L+ SG LR LQP+FQIYG+ + FSGPVVT+KVFEDN L+R+ +E +G
Sbjct: 4 VTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEEKGN 63
Query: 65 GKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPL 124
G+VLV+DGGGS RCA++GGN A NNGW+GIVVNGCIRDVDEINGC IGVRAL SHP+
Sbjct: 64 GRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPI 123
Query: 125 KSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
K++KKG G++ VPV IAG I DGEWLYAD+DGILVS+ ELS+
Sbjct: 124 KASKKGLGEQRVPVNIAGTRIC-----DGEWLYADTDGILVSQIELSV 166
>TAIR|locus:2075432 [details] [associations]
symbol:AT3G02770 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008428 "ribonuclease
inhibitor activity" evidence=IEA] [GO:0051252 "regulation of RNA
metabolic process" evidence=IEA] InterPro:IPR010203 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0008428 EMBL:AC018363
eggNOG:COG0684 Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737
SUPFAM:SSF89562 GO:GO:0051252 EMBL:AY086886 IPI:IPI00542180
RefSeq:NP_186926.1 UniGene:At.41079 ProteinModelPortal:Q9M8R9
SMR:Q9M8R9 IntAct:Q9M8R9 STRING:Q9M8R9 PaxDb:Q9M8R9 PRIDE:Q9M8R9
EnsemblPlants:AT3G02770.1 GeneID:820949 KEGG:ath:AT3G02770
TAIR:At3g02770 HOGENOM:HOG000252803 InParanoid:Q9M8R9 KO:K02553
OMA:CDAYPDL PhylomeDB:Q9M8R9 ProtClustDB:CLSN2685213
Genevestigator:Q9M8R9 GermOnline:AT3G02770 TIGRFAMs:TIGR01935
Uniprot:Q9M8R9
Length = 166
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 110/168 (65%), Positives = 134/168 (79%)
Query: 5 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGE 64
V TAE CD+N ++ SG LR LQPVFQIYG+ + FSGPVVT+KVFEDN L+R LE +G
Sbjct: 4 VTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEEKGN 63
Query: 65 GKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPL 124
G+VLV+DGGGS+RCA++GGN A NNGW+GI+VNGCIRDVDEINGC IGVRAL SHP+
Sbjct: 64 GRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPI 123
Query: 125 KSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
K++KKG G++ V + IAG I DGEWLYAD+DGILVS+ ELS+
Sbjct: 124 KASKKGLGEQRVSLNIAGTRIC-----DGEWLYADTDGILVSQIELSV 166
>TIGR_CMR|SO_4197 [details] [associations]
symbol:SO_4197 "S-adenosylmethionine:2-demethylmenaquinone
methyltransferase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008757 "S-adenosylmethionine-dependent methyltransferase
activity" evidence=ISS] [GO:0009234 "menaquinone biosynthetic
process" evidence=ISS] InterPro:IPR010203 InterPro:IPR014339
GO:GO:0005737 GO:GO:0008428 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0684 Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737
SUPFAM:SSF89562 GO:GO:0051252 HOGENOM:HOG000252803 KO:K02553
TIGRFAMs:TIGR01935 OMA:ELCDIYH ProtClustDB:PRK09372 HAMAP:MF_00471
TIGRFAMs:TIGR02998 RefSeq:NP_719725.1 ProteinModelPortal:Q8E9R9
SMR:Q8E9R9 GeneID:1171801 KEGG:son:SO_4197 PATRIC:23528016
Uniprot:Q8E9R9
Length = 161
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 69/166 (41%), Positives = 106/166 (63%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T+E CD ++ D V++P+F YG C SF G + T+K FEDN L+ ++L+ G+GK
Sbjct: 5 TSELCDMYLDVV---D--VVEPMFSNYGGCSSFGGSISTIKCFEDNGLITDVLQEDGQGK 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VL++DGGGS+R AL+ G + +LA +N W GI+V G +RDVD + IG++AL S P+ +
Sbjct: 60 VLLVDGGGSLRRALIDGTIAELAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGA 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+ G+ +PV GV +F+ G+ +YAD+ GI++S L I
Sbjct: 120 DGNSVGEVDIPVNFGGV----TFL-PGDHIYADNTGIILSPEPLDI 160
>UNIPROTKB|Q47VZ9 [details] [associations]
symbol:rraA "Regulator of ribonuclease activity A"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010203 InterPro:IPR014339 GO:GO:0005737
GO:GO:0008428 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0684 Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737
SUPFAM:SSF89562 GO:GO:0051252 HOGENOM:HOG000252803 KO:K02553
TIGRFAMs:TIGR01935 OMA:ELCDIYH ProtClustDB:PRK09372
RefSeq:YP_271023.1 ProteinModelPortal:Q47VZ9 STRING:Q47VZ9
GeneID:3520127 KEGG:cps:CPS_4374 PATRIC:21471593
BioCyc:CPSY167879:GI48-4383-MONOMER HAMAP:MF_00471
TIGRFAMs:TIGR02998 Uniprot:Q47VZ9
Length = 165
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 75/166 (45%), Positives = 106/166 (63%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T+E CD A L+ D V+ P+F YG SF+G VVTLK FE L+ EL+ T G GK
Sbjct: 5 TSELCDFYADLI---D--VVDPIFCNYGGRSSFAGKVVTLKCFEHLGLINELVATYGTGK 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLVIDGGGS R AL+ + Q A NNGW GIV G +RDVD ++G IG++ALG+ P+ +
Sbjct: 60 VLVIDGGGSTRRALIDLGIAQCAANNGWEGIVCYGSVRDVDALDGVDIGIQALGAIPVGA 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+++ G+ + + AGV + + D +++YAD+ GI++S L I
Sbjct: 120 SEQNIGETDMAINFAGV----TLLPD-DYIYADNTGIILSPEALEI 160
>TIGR_CMR|CPS_4374 [details] [associations]
symbol:CPS_4374 "protein of unknown function"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010203 InterPro:IPR014339 GO:GO:0005737
GO:GO:0008428 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0684 Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737
SUPFAM:SSF89562 GO:GO:0051252 HOGENOM:HOG000252803 KO:K02553
TIGRFAMs:TIGR01935 OMA:ELCDIYH ProtClustDB:PRK09372
RefSeq:YP_271023.1 ProteinModelPortal:Q47VZ9 STRING:Q47VZ9
GeneID:3520127 KEGG:cps:CPS_4374 PATRIC:21471593
BioCyc:CPSY167879:GI48-4383-MONOMER HAMAP:MF_00471
TIGRFAMs:TIGR02998 Uniprot:Q47VZ9
Length = 165
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 75/166 (45%), Positives = 106/166 (63%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T+E CD A L+ D V+ P+F YG SF+G VVTLK FE L+ EL+ T G GK
Sbjct: 5 TSELCDFYADLI---D--VVDPIFCNYGGRSSFAGKVVTLKCFEHLGLINELVATYGTGK 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLVIDGGGS R AL+ + Q A NNGW GIV G +RDVD ++G IG++ALG+ P+ +
Sbjct: 60 VLVIDGGGSTRRALIDLGIAQCAANNGWEGIVCYGSVRDVDALDGVDIGIQALGAIPVGA 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+++ G+ + + AGV + + D +++YAD+ GI++S L I
Sbjct: 120 SEQNIGETDMAINFAGV----TLLPD-DYIYADNTGIILSPEALEI 160
>UNIPROTKB|P0A8R0 [details] [associations]
symbol:rraA "ribonuclease E inhibitor protein"
species:83333 "Escherichia coli K-12" [GO:0051252 "regulation of
RNA metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0060702 "negative regulation of endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008428 "ribonuclease inhibitor activity" evidence=IEA;IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA]
InterPro:IPR010203 InterPro:IPR014339 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0008428 GO:GO:0006401 EMBL:L19201 GO:GO:0060702
eggNOG:COG0684 Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737
SUPFAM:SSF89562 EMBL:U56082 GO:GO:0051252 HOGENOM:HOG000252803
KO:K02553 TIGRFAMs:TIGR01935 OMA:ELCDIYH ProtClustDB:PRK09372
HAMAP:MF_00471 TIGRFAMs:TIGR02998 PIR:S40872 RefSeq:NP_418364.1
RefSeq:YP_491522.1 PDB:1Q5X PDB:2YJT PDB:2YJV PDBsum:1Q5X
PDBsum:2YJT PDBsum:2YJV ProteinModelPortal:P0A8R0 SMR:P0A8R0
DIP:DIP-35864N IntAct:P0A8R0 PRIDE:P0A8R0
EnsemblBacteria:EBESCT00000002706 EnsemblBacteria:EBESCT00000002707
EnsemblBacteria:EBESCT00000016794 GeneID:12932791 GeneID:948419
KEGG:ecj:Y75_p3258 KEGG:eco:b3929 PATRIC:32123373 EchoBASE:EB1825
EcoGene:EG11879 BioCyc:EcoCyc:EG11879-MONOMER
BioCyc:ECOL316407:JW3900-MONOMER EvolutionaryTrace:P0A8R0
Genevestigator:P0A8R0 Uniprot:P0A8R0
Length = 161
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 68/166 (40%), Positives = 103/166 (62%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T+E CD + D+ V++P+F +G SF G ++T+K FEDN L+ +LLE G G+
Sbjct: 5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGR 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLV+DGGGS+R ALV L +LA N W G+V+ G +R VD++ IG++A+ + P+ +
Sbjct: 60 VLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGA 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+G G+ V V GV +F G+ LYAD+ GI++S+ L I
Sbjct: 120 AGEGIGESDVRVNFGGV----TFF-SGDHLYADNTGIILSEDPLDI 160
>UNIPROTKB|Q489G8 [details] [associations]
symbol:CPS_0538 "Putative uncharacterized protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010203 GO:GO:0008428 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0684 Gene3D:3.50.30.40
InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562 GO:GO:0051252
HOGENOM:HOG000252803 KO:K02553 TIGRFAMs:TIGR01935
ProtClustDB:PRK12487 RefSeq:YP_267296.1 ProteinModelPortal:Q489G8
STRING:Q489G8 GeneID:3523336 KEGG:cps:CPS_0538 PATRIC:21464419
OMA:LQICRQS BioCyc:CPSY167879:GI48-633-MONOMER Uniprot:Q489G8
Length = 163
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 66/150 (44%), Positives = 91/150 (60%)
Query: 23 LRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVG 82
L + F YG+ F G +VT+ FEDN V+E+L T G GKVLV+DG GSM AL+G
Sbjct: 16 LSLANQAFTDYGKNTIFYGEIVTVSCFEDNSKVKEILATDGSGKVLVVDGKGSMNRALLG 75
Query: 83 GNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAG 142
+ + A N W +V+NGCIRD I I V+A+G +P+K+ K G GD ++ V A
Sbjct: 76 DMIAENAVKNNWQAVVINGCIRDAGTIRTLEIAVKAIGCNPIKTEKLGVGDTNIVVNFAN 135
Query: 143 VYIAGSFIRDGEWLYADSDGILVSKSELSI 172
V FI G ++Y D +G+ VSKS+LS+
Sbjct: 136 V----EFI-PGWYVYGDENGLAVSKSKLSV 160
>TIGR_CMR|CPS_0538 [details] [associations]
symbol:CPS_0538 "protein of unknown function"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010203 GO:GO:0008428 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0684 Gene3D:3.50.30.40
InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562 GO:GO:0051252
HOGENOM:HOG000252803 KO:K02553 TIGRFAMs:TIGR01935
ProtClustDB:PRK12487 RefSeq:YP_267296.1 ProteinModelPortal:Q489G8
STRING:Q489G8 GeneID:3523336 KEGG:cps:CPS_0538 PATRIC:21464419
OMA:LQICRQS BioCyc:CPSY167879:GI48-633-MONOMER Uniprot:Q489G8
Length = 163
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 66/150 (44%), Positives = 91/150 (60%)
Query: 23 LRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVG 82
L + F YG+ F G +VT+ FEDN V+E+L T G GKVLV+DG GSM AL+G
Sbjct: 16 LSLANQAFTDYGKNTIFYGEIVTVSCFEDNSKVKEILATDGSGKVLVVDGKGSMNRALLG 75
Query: 83 GNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAG 142
+ + A N W +V+NGCIRD I I V+A+G +P+K+ K G GD ++ V A
Sbjct: 76 DMIAENAVKNNWQAVVINGCIRDAGTIRTLEIAVKAIGCNPIKTEKLGVGDTNIVVNFAN 135
Query: 143 VYIAGSFIRDGEWLYADSDGILVSKSELSI 172
V FI G ++Y D +G+ VSKS+LS+
Sbjct: 136 V----EFI-PGWYVYGDENGLAVSKSKLSV 160
>TIGR_CMR|SO_2567 [details] [associations]
symbol:SO_2567 "S-adenosylmethionine:2-demethylmenaquinone
methyltransferase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008757 "S-adenosylmethionine-dependent methyltransferase
activity" evidence=ISS] [GO:0009234 "menaquinone biosynthetic
process" evidence=ISS] InterPro:IPR010203 GO:GO:0008428
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0684
Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562
GO:GO:0051252 HOGENOM:HOG000252803 KO:K02553 TIGRFAMs:TIGR01935
RefSeq:NP_718153.1 ProteinModelPortal:Q8EE23 GeneID:1170272
KEGG:son:SO_2567 PATRIC:23524763 ProtClustDB:PRK12487
Uniprot:Q8EE23
Length = 164
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 61/149 (40%), Positives = 92/149 (61%)
Query: 23 LRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVG 82
L +L F+ +G R F G VVT+K FEDN V+E+L G GKVL++DGGGS R AL+G
Sbjct: 16 LTLLPLAFRAFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKVLIVDGGGSSRRALLG 75
Query: 83 GNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAG 142
+ Q A +NGW G+++NG +RD ++ +GV ALG+ P+K+ K G +VP+ +
Sbjct: 76 DLIAQSAMDNGWQGVIINGYVRDAARLSSFNLGVYALGAMPMKTEKLDQGQINVPIELGC 135
Query: 143 VYIAGSFIRDGEWLYADSDGILVSKSELS 171
V + + G +Y D +GI +S+ L+
Sbjct: 136 VTV-----KPGMMVYVDENGIAISEESLN 159
>UNIPROTKB|P0A666 [details] [associations]
symbol:rraA "Putative regulator of ribonuclease activity"
species:1773 "Mycobacterium tuberculosis" [GO:0070207 "protein
homotrimerization" evidence=IPI] [GO:0008757
"S-adenosylmethionine-dependent methyltransferase activity"
evidence=TAS] InterPro:IPR010203 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842584
GO:GO:0008428 GO:GO:0070207 eggNOG:COG0684 Gene3D:3.50.30.40
InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562 GO:GO:0051252
HOGENOM:HOG000252803 KO:K02553 TIGRFAMs:TIGR01935 OMA:NIEAGTH
PIR:B70655 RefSeq:NP_218370.1 RefSeq:NP_338521.1
RefSeq:YP_006517352.1 PDB:1NXJ PDBsum:1NXJ
ProteinModelPortal:P0A666 SMR:P0A666 PRIDE:P0A666
EnsemblBacteria:EBMYCT00000000475 EnsemblBacteria:EBMYCT00000071221
GeneID:13317479 GeneID:886181 GeneID:922552 KEGG:mtc:MT3968
KEGG:mtu:Rv3853 KEGG:mtv:RVBD_3853 PATRIC:18130481
TubercuList:Rv3853 ProtClustDB:PRK09372 EvolutionaryTrace:P0A666
Uniprot:P0A666
Length = 157
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 58/144 (40%), Positives = 92/144 (63%)
Query: 22 DLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALV 81
D+R F+ +G F+GP+ T++ F+DN L++ +L G VLVIDG GS+ ALV
Sbjct: 18 DVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALV 77
Query: 82 GGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIA 141
G + +LA + GW+G++V+G +RD + G IG++ALG++P KS K G G++ V + +
Sbjct: 78 GDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLG 137
Query: 142 GVYIAGSFIRDGEWLYADSDGILV 165
GV +F+ G+ Y+D DGI+V
Sbjct: 138 GV----TFV-PGDIAYSDDDGIIV 156
>UNIPROTKB|Q48I30 [details] [associations]
symbol:PSPPH_2762 "Uncharacterized protein" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000058 GenomeReviews:CP000058_GR eggNOG:COG0684
HOGENOM:HOG000107599 Gene3D:3.50.30.40 InterPro:IPR005493
Pfam:PF03737 SUPFAM:SSF89562 RefSeq:YP_274951.1
ProteinModelPortal:Q48I30 STRING:Q48I30 GeneID:3557182
KEGG:psp:PSPPH_2762 PATRIC:19974841 OMA:CACWGEL
ProtClustDB:CLSK759470 Uniprot:Q48I30
Length = 212
Score = 110 (43.8 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 45/156 (28%), Positives = 72/156 (46%)
Query: 17 LLASGDLRVLQPVFQIYGQCRSFSGPVVTLKV-FEDNVLVRELLETRGEGKVLVIDGGGS 75
L SG L ++P+F G G VVT+KV D ++R+ L G VLVI+ G
Sbjct: 31 LTDSGYLPGIRPLFD--GV--RLVGNVVTVKVQLPDGSILRDALLNSLPGDVLVIECVGD 86
Query: 76 MRCALVGGNLGQLAHN-NGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGH-GD 133
CA G L LA G +G+V++G + DV + + V + G + + G G+
Sbjct: 87 DHCAC-WGELRTLAALIKGLAGVVISGAVTDVAALREHRLPVFSRGISAVTTRSLGERGE 145
Query: 134 KHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSE 169
+ + I GV + G+ D DG+ + ++
Sbjct: 146 LNGQINIGGVVV-----NPGDIAIGDDDGVFILSAQ 176
>UNIPROTKB|Q5LQS6 [details] [associations]
symbol:SPO2412 "Aldolase, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0008152 "metabolic process" evidence=ISS]
GO:GO:0003824 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562
RefSeq:YP_167629.1 ProteinModelPortal:Q5LQS6 GeneID:3192853
KEGG:sil:SPO2412 PATRIC:23378221 OMA:WIMADDD Uniprot:Q5LQS6
Length = 231
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 42/163 (25%), Positives = 66/163 (40%)
Query: 5 VATAEACDSNAALLASGDLR-VLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVR-ELLETR 62
V T CD AL G + V++P+ + + + +GP + +L +
Sbjct: 28 VPTGFVCD---ALGGQGAMNTVIRPIGGLEREVHA-AGPALVADNGPAEILATVAAVHFA 83
Query: 63 GEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSH 122
G V+V G A G NL + N G V +G +RD + G+ G +
Sbjct: 84 QPGDVIVAATHGGRNVAAAGDNLCAMMRNKGCVAFVTDGELRDYKGLMEVGLPAWCAGLN 143
Query: 123 PLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILV 165
P KG G V G +AG + G+ + AD DG++V
Sbjct: 144 PNSPFSKGPG--RVGF---GATVAGRHVESGDMIVADRDGVVV 181
>TIGR_CMR|SPO_2412 [details] [associations]
symbol:SPO_2412 "aldolase, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0008152 "metabolic process" evidence=ISS]
GO:GO:0003824 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.50.30.40 InterPro:IPR005493 Pfam:PF03737 SUPFAM:SSF89562
RefSeq:YP_167629.1 ProteinModelPortal:Q5LQS6 GeneID:3192853
KEGG:sil:SPO2412 PATRIC:23378221 OMA:WIMADDD Uniprot:Q5LQS6
Length = 231
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 42/163 (25%), Positives = 66/163 (40%)
Query: 5 VATAEACDSNAALLASGDLR-VLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVR-ELLETR 62
V T CD AL G + V++P+ + + + +GP + +L +
Sbjct: 28 VPTGFVCD---ALGGQGAMNTVIRPIGGLEREVHA-AGPALVADNGPAEILATVAAVHFA 83
Query: 63 GEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSH 122
G V+V G A G NL + N G V +G +RD + G+ G +
Sbjct: 84 QPGDVIVAATHGGRNVAAAGDNLCAMMRNKGCVAFVTDGELRDYKGLMEVGLPAWCAGLN 143
Query: 123 PLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILV 165
P KG G V G +AG + G+ + AD DG++V
Sbjct: 144 PNSPFSKGPG--RVGF---GATVAGRHVESGDMIVADRDGVVV 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.140 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 172 172 0.00093 108 3 11 22 0.41 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 578 (61 KB)
Total size of DFA: 149 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.56u 0.10s 14.66t Elapsed: 00:00:02
Total cpu time: 14.56u 0.10s 14.66t Elapsed: 00:00:02
Start: Thu May 9 19:34:58 2013 End: Thu May 9 19:35:00 2013