BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030761
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C8O|A Chain A, The Crystal Structure Of Rraa From Pao1
pdb|3C8O|B Chain B, The Crystal Structure Of Rraa From Pao1
Length = 162
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 10/166 (6%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV+E ++ G+GK
Sbjct: 5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGK 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLV+DGGGS+R AL+G L + A NGW GIVV GCIRDVD I +GV+AL SHPLK+
Sbjct: 60 VLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKT 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+K+G GD +V V GV R GE++YAD++GI+VS L +
Sbjct: 120 DKRGIGDLNVAVTFGGVT-----FRPGEFVYADNNGIIVSPQALKM 160
>pdb|2PCN|A Chain A, Crystal Structure Of S-Adenosylmethionine:
2-Dimethylmenaquinone Methyltransferase (Gk_1813) From
Geobacillus Kaustophilus Hta426
Length = 161
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 10/166 (6%)
Query: 5 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGE 64
+ TA+ CD +L+V + FQ YG R FSGP+ T+ VFEDNVLVRE LET
Sbjct: 1 MKTADLCDQFL-----DELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPP 55
Query: 65 GKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPL 124
G VLV+DG GS R AL+G L Q+A G +G++++GCIRD EI IGV A+G+ P+
Sbjct: 56 GTVLVVDGKGSRRVALLGDRLAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPV 115
Query: 125 KSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSEL 170
KS K+G G + V + GV G ++YAD+DG++V+ +L
Sbjct: 116 KSKKEGKGARDVVLEFGGVR-----WEPGAYVYADADGVVVANKDL 156
>pdb|1J3L|A Chain A, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
pdb|1J3L|B Chain B, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
pdb|1J3L|C Chain C, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
pdb|1J3L|D Chain D, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
pdb|1J3L|E Chain E, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
pdb|1J3L|F Chain F, Structure Of The Rna-Processing Inhibitor Rraa From
Thermus Thermophilis
Length = 164
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 5/140 (3%)
Query: 26 LQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNL 85
L VF+ +G F+G V TL+VFEDN LVR++LE G G+VL +DGGGS+R AL+GGNL
Sbjct: 18 LPXVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNL 77
Query: 86 GQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYI 145
+ A GW+G+VV+G +RD +E+ IG+ AL + P KS K+G G+ VP+ + GV +
Sbjct: 78 ARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEV 137
Query: 146 AGSFIRDGEWLYADSDGILV 165
G +L AD DG+L+
Sbjct: 138 L-----PGSFLLADEDGLLL 152
>pdb|1Q5X|A Chain A, Structure Of Of Rraa (Meng), A Protein Inhibitor Of Rna
Processing
pdb|1Q5X|B Chain B, Structure Of Of Rraa (Meng), A Protein Inhibitor Of Rna
Processing
pdb|1Q5X|C Chain C, Structure Of Of Rraa (Meng), A Protein Inhibitor Of Rna
Processing
pdb|2YJT|A Chain A, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
pdb|2YJT|B Chain B, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
pdb|2YJT|C Chain C, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
pdb|2YJV|A Chain A, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|B Chain B, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|C Chain C, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|D Chain D, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|E Chain E, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|F Chain F, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|G Chain G, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|H Chain H, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|I Chain I, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|J Chain J, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|K Chain K, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
pdb|2YJV|L Chain L, Crystal Structure Of E. Coli Regulator Of Ribonuclease
Activity A (Rraa) Bound To Fragment Of Dead-Box Protein
Rhlb
Length = 161
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 10/166 (6%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T+E CD + D+ V++P+F +G SF G ++T+K FEDN L+ +LLE G G+
Sbjct: 5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGR 59
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLV+DGGGS+R ALV L +LA N W G+V+ G +R VD++ IG++A+ + P+ +
Sbjct: 60 VLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGA 119
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
+G G+ V V GV +F G+ LYAD+ GI++S+ L I
Sbjct: 120 AGEGIGESDVRVNFGGV----TFFS-GDHLYADNTGIILSEDPLDI 160
>pdb|1NXJ|A Chain A, Structure Of Rv3853 From Mycobacterium Tuberculosis
pdb|1NXJ|B Chain B, Structure Of Rv3853 From Mycobacterium Tuberculosis
pdb|1NXJ|C Chain C, Structure Of Rv3853 From Mycobacterium Tuberculosis
Length = 183
Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 5/144 (3%)
Query: 22 DLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALV 81
D+R F+ +G F+GP+ T++ F+DN L++ +L G VLVIDG GS+ ALV
Sbjct: 44 DVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALV 103
Query: 82 GGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIA 141
G + +LA + GW+G++V+G +RD + G IG++ALG++P KS K G G++ V + +
Sbjct: 104 GDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLG 163
Query: 142 GVYIAGSFIRDGEWLYADSDGILV 165
GV +F+ G+ Y+D DGI+V
Sbjct: 164 GV----TFV-PGDIAYSDDDGIIV 182
>pdb|1VI4|A Chain A, Crystal Structure Of Regulator Of Ribonuclease Acivity A
Protein 1
Length = 174
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 7 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGK 66
T + CD + + +L Q +GQ +F G +VT++ + DN VR++L G+GK
Sbjct: 8 TPDLCDKYES-----QVTLLNLPLQNFGQRSAFWGEIVTVRCYHDNSKVRDVLSQNGKGK 62
Query: 67 VLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKS 126
VLV+DG GS AL G L LA N W G+++ G +RDV + +G++ALG+ P K+
Sbjct: 63 VLVVDGHGSCHKALXGDQLAILAIKNDWEGVIIYGAVRDVVAXSEXDLGIKALGTSPFKT 122
Query: 127 NKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGILVSKSELSI 172
K+G G +V + + G++LYAD +GIL S++ L +
Sbjct: 123 EKRGAGQVNVT-----LTXQNQIVEPGDYLYADWNGILXSETALDV 163
>pdb|3HBZ|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase
(Bt_2081) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.05 A Resolution
Length = 342
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 121 SHPLKSNKKGHGDKHVPVYIAGVY 144
S+PLK+ K G +H+P Y+AG Y
Sbjct: 194 SNPLKATKFGLPFRHIPTYLAGYY 217
>pdb|3NOJ|A Chain A, The Structure Of HmgCHA ALDOLASE FROM THE PROTOCATECHUATE
DEGRADATION Pathway Of Pseudomonas Putida
Length = 238
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 5 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFE-DNVLVRELLETRG 63
VAT + LL+S +R +Q Q S +G VT+ V DN + +E
Sbjct: 31 VATVHEAQNRKGLLSS-KMRPIQ-------QGTSLAGSAVTVLVAPGDNWMFHVAVEQCR 82
Query: 64 EGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHP 123
G VLV+ G L G ++V+ +RD + G V A +
Sbjct: 83 PGDVLVVSPSSPCTDGYFGDLLATSLQARGVRALIVDAGVRDTQTLRDMGFAVWARAINA 142
Query: 124 LKSNKKGHGDKHVPVYIAGVYI 145
+ K+ G ++PV G I
Sbjct: 143 QGTVKETLGSVNLPVICGGQLI 164
>pdb|1YGT|A Chain A, Dynein Light Chain Tctex-1
pdb|3FM7|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|B Chain B, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 111
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 60 ETRGEGKVLVIDGGGSMRCAL---VGGNLGQLAHNNGWSGIVVNGCI 103
++R E + +V D +++ A+ +GGN Q N W+G VV C+
Sbjct: 3 DSREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCL 49
>pdb|2PG1|E Chain E, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|F Chain F, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|G Chain G, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|H Chain H, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
Length = 111
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 60 ETRGEGKVLVIDGGGSMRCAL---VGGNLGQLAHNNGWSGIVVNGCI 103
++R E + +V D +++ A+ +GGN Q N W+G VV C+
Sbjct: 3 DSREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCL 49
>pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|1W23|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|2BHX|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BHX|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BI1|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI1|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI2|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI2|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI3|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI3|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI5|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI5|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI9|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BI9|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BIA|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
pdb|2BIA|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
Length = 360
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 54 LVRELLETRGEGKVLVIDGGGSMRCALVGGNL 85
L+RELL+ + ++L + GG S++ ++ NL
Sbjct: 56 LLRELLQIPNDYQILFLQGGASLQFTMLPMNL 87
>pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIE|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIG|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
pdb|2BIG|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
Length = 361
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 54 LVRELLETRGEGKVLVIDGGGSMRCALVGGNL 85
L+RELL+ + ++L + GG S++ ++ NL
Sbjct: 57 LLRELLQIPNDYQILFLQGGASLQFTMLPMNL 88
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 103 IRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRD 152
++D EI GIGVR S + KK + + VYI G IA I D
Sbjct: 88 VKDFKEI--SGIGVRGKISDKIIEVKKAENNNDIAVYINGEPIASFNISD 135
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 103 IRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRD 152
++D EI GIGVR S + KK + + VYI G IA I D
Sbjct: 88 VKDFKEI--SGIGVRGKISDKIIEVKKAENNNDIAVYINGEPIASFNISD 135
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 103 IRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRD 152
++D EI GIGVR S + KK + + VYI G IA I D
Sbjct: 88 VKDFKEI--SGIGVRGKISDKIIEVKKAENNNDIAVYINGEPIASFNISD 135
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 80 LVGGNLGQLAHNNGWSGIVVNGCIRDV 106
+V GN GQ+ N W NGC+ D+
Sbjct: 695 MVEGNQGQMCINMEWGAFGDNGCLDDI 721
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 131 HGDKHVPVYIAGVYIAGSFIRDGEWLYADS 160
HG H P Y G + GS++ W +AD+
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADT 167
>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
Length = 310
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 108 EINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLY 157
E+ G + A G +PL + D +VP +A + + G + R G+W Y
Sbjct: 204 ELATLGATLAAGGVNPLTHKRVLQAD-NVPYILAEMMMEGLYGRSGDWAY 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,325,871
Number of Sequences: 62578
Number of extensions: 232130
Number of successful extensions: 476
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 22
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)