Query 030761
Match_columns 172
No_of_seqs 141 out of 1051
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q5x_A Regulator of RNAse E ac 100.0 2.3E-53 8E-58 330.9 18.6 158 4-172 2-160 (161)
2 3c8o_A Regulator of ribonuclea 100.0 3.2E-53 1.1E-57 330.4 18.4 158 4-171 2-159 (162)
3 2pcn_A S-adenosylmethionine:2- 100.0 5.1E-53 1.7E-57 329.0 18.9 157 5-171 1-157 (161)
4 1j3l_A Demethylmenaquinone met 100.0 5.5E-53 1.9E-57 329.6 17.9 157 4-171 2-158 (164)
5 1vi4_A Regulator of ribonuclea 100.0 8E-53 2.7E-57 331.4 19.0 159 3-171 4-162 (174)
6 1nxj_A Probable S-adenosylmeth 100.0 4.4E-51 1.5E-55 323.7 17.5 156 1-166 28-183 (183)
7 3noj_A 4-carboxy-4-hydroxy-2-o 100.0 5.7E-51 1.9E-55 334.9 14.3 160 1-171 25-185 (238)
8 3k4i_A Uncharacterized protein 100.0 2.9E-50 9.9E-55 331.8 16.0 162 1-171 19-186 (244)
9 2c5q_A RRAA-like protein YER01 100.0 3.4E-49 1.2E-53 324.8 11.5 163 1-170 6-191 (240)
10 3q58_A N-acetylmannosamine-6-p 38.5 22 0.00075 27.8 3.1 40 78-118 34-74 (229)
11 3igs_A N-acetylmannosamine-6-p 30.7 35 0.0012 26.6 3.1 40 78-118 34-74 (232)
12 3n2s_A NADPH-dependent nitro/f 24.8 36 0.0012 26.5 2.2 39 77-115 113-152 (249)
13 3cpt_A Mitogen-activated prote 24.7 36 0.0012 25.1 2.0 13 155-167 41-53 (143)
14 1zch_A Hypothetical oxidoreduc 24.7 43 0.0015 26.1 2.7 39 77-115 113-152 (255)
15 1r61_A Metal-dependent hydrola 23.2 1E+02 0.0035 23.4 4.5 69 37-105 71-148 (207)
16 1vfg_A A-adding enzyme, poly A 22.6 25 0.00085 29.6 0.9 23 85-107 2-24 (390)
17 1f5v_A Oxygen-insensitive NADP 22.4 44 0.0015 25.7 2.2 39 77-115 107-146 (240)
18 3mvn_A UDP-N-acetylmuramate:L- 22.2 73 0.0025 23.0 3.3 32 54-87 128-159 (163)
19 1bkj_A NADPH-flavin oxidoreduc 21.4 47 0.0016 25.6 2.2 39 77-115 107-146 (240)
No 1
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=100.00 E-value=2.3e-53 Score=330.94 Aligned_cols=158 Identities=41% Similarity=0.752 Sum_probs=149.2
Q ss_pred CCChhhHhHhhh-ccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcceeh
Q 030761 4 VVATAEACDSNA-ALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVG 82 (172)
Q Consensus 4 ~~~t~~v~Dal~-~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~~G 82 (172)
+++|++|||+|+ +++ .+.|.++++++..+++|+|+|+|+.+||+.+++++++++||+|||||++++.++|+||
T Consensus 2 ~~~ta~l~Dal~~~~~------~~~~~i~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G 75 (161)
T 1q5x_A 2 KYDTSELCDIYQEDVN------VVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVD 75 (161)
T ss_dssp CCCHHHHHHHHGGGSE------ECCSCCEECSSCSSEEEEEEEEECSSBCHHHHHHHTSCCTTEEEEEECTTCSSSEEEC
T ss_pred ccccccHhhhhhhccC------CccCcceECCCCCEEEEEEEEEEEeCCcHHHHHHHhhcCCCCEEEEECCCCCCceeeh
Confidence 589999999998 443 4667788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcCCc
Q 030761 83 GNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDG 162 (172)
Q Consensus 83 ~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~dG 162 (172)
|+|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|+ |++|+|||+||||+||
T Consensus 76 ~~la~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~g-----Gv~V~PGD~i~aD~dG 150 (161)
T 1q5x_A 76 AELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFG-----GVTFFSGDHLYADNTG 150 (161)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCHHHHTTSSSEEEEEEECSSBCBCSCCSEESCCEEET-----TEEECTTCEEEECSSC
T ss_pred HHHHHHHHHCCCeEEEecCccCCHHHHhcCCCcEEEeEeccCCCCcCceeeeCCCEEEC-----CEEECCCCEEEEcCCe
Confidence 99999999999999999999999999999999999999999998888999999999999 9999999999999999
Q ss_pred eEEecCCcCC
Q 030761 163 ILVSKSELSI 172 (172)
Q Consensus 163 VvviP~~l~~ 172 (172)
|||||+++++
T Consensus 151 VvviP~~l~~ 160 (161)
T 1q5x_A 151 IILSEDPLDI 160 (161)
T ss_dssp EEEESSCSSC
T ss_pred EEEEchHHcc
Confidence 9999999874
No 2
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.2e-53 Score=330.40 Aligned_cols=158 Identities=50% Similarity=0.873 Sum_probs=149.5
Q ss_pred CCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcceehH
Q 030761 4 VVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGG 83 (172)
Q Consensus 4 ~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~~G~ 83 (172)
+++|++|||+|.. +++.+.|.++++++.++++|+|+||++.+||+.+++++++.+||+|||||++++.++|+|||
T Consensus 2 ~~~t~~l~Da~~~-----~~~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G~ 76 (162)
T 3c8o_A 2 HYVTPDLCDAYPE-----LVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGD 76 (162)
T ss_dssp CCCHHHHHHHCTT-----TCEECCSCCEECSSCSCEEEEEEEEECSSCCHHHHHHHTSCCBTEEEEEECTTCSSSBSCCH
T ss_pred cCChhhHHHhhhc-----ccCccCcccccCCCCCEEEEEEEEEEEeCCchHHHHHHhccCCCCEEEEECCCCCCccchHH
Confidence 5899999999962 23457788999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcCCce
Q 030761 84 NLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGI 163 (172)
Q Consensus 84 l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~dGV 163 (172)
+|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|+ |++|+|||+||||+|||
T Consensus 77 ~la~~a~~~G~~GiVidG~vRD~~~l~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~g-----Gv~V~PGD~i~aD~dGV 151 (162)
T 3c8o_A 77 MLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFG-----GVTFRPGEFVYADNNGI 151 (162)
T ss_dssp HHHHHHHHTTBCEEEEEEEECCHHHHTTSSSEEEEEEECCCBCCCCSCCEESCCEEET-----TEEECTTSEEEECSSCE
T ss_pred HHHHHHHHCCCeEEEecCCCCCHHHHhcCCCcEEEeecCCCCCcceeeeeeCCCEEEC-----CEEECCCCEEEEcCCeE
Confidence 9999999999999999999999999999999999999999998888899999999999 99999999999999999
Q ss_pred EEecCCcC
Q 030761 164 LVSKSELS 171 (172)
Q Consensus 164 vviP~~l~ 171 (172)
||||++|.
T Consensus 152 vviP~~l~ 159 (162)
T 3c8o_A 152 IVSPQALK 159 (162)
T ss_dssp EEESSCCC
T ss_pred EEECcccc
Confidence 99999985
No 3
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=5.1e-53 Score=329.01 Aligned_cols=157 Identities=47% Similarity=0.796 Sum_probs=149.1
Q ss_pred CChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcceehHH
Q 030761 5 VATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGN 84 (172)
Q Consensus 5 ~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~~G~l 84 (172)
++|++|||+|.. ..+.+.|.|+++++.++++|+|+|+++.+||+.+++++++.+||+|||||+.++.++|+|||+
T Consensus 1 ~~t~dl~Da~~~-----~~~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G~~ 75 (161)
T 2pcn_A 1 MKTADLCDQFLD-----ELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDR 75 (161)
T ss_dssp CCHHHHHHHHGG-----GEEECCSCCEECSSCSCEEEEEEEEECSSBCHHHHHHHHHSCTTCEEEEECTTCCSSEEECHH
T ss_pred CCHHHHhhcccc-----ccCccCccceeCCCCCEEEEEEEEEEEecCchHHHHHHHhcCCCCEEEEECCCCCCceeehHH
Confidence 589999999973 245677889999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcCCceE
Q 030761 85 LGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGIL 164 (172)
Q Consensus 85 ~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~dGVv 164 (172)
|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|+ |++|+|||+||||+||||
T Consensus 76 la~~a~~~G~~GiVidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~g-----Gv~V~PGD~i~aD~dGVv 150 (161)
T 2pcn_A 76 LAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFG-----GVRWEPGAYVYADADGVV 150 (161)
T ss_dssp HHHHHHHTTCCEEEEEEEESCHHHHTTSSSEEEEEEECCSCCBCSCCSEESCCEEET-----TEEECTTCEEEEETTEEE
T ss_pred HHHHHHHcCCcEEEecccccCHHHHhcCCCcEEEeecCCCCCccceeeeeCCCEEEC-----CEEECCCCEEEECCCeEE
Confidence 999999999999999999999999999999999999999988888899999999999 999999999999999999
Q ss_pred EecCCcC
Q 030761 165 VSKSELS 171 (172)
Q Consensus 165 viP~~l~ 171 (172)
|||++|+
T Consensus 151 viP~~l~ 157 (161)
T 2pcn_A 151 VANKDLL 157 (161)
T ss_dssp EESSCTT
T ss_pred EEChHHh
Confidence 9999986
No 4
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=100.00 E-value=5.5e-53 Score=329.63 Aligned_cols=157 Identities=43% Similarity=0.738 Sum_probs=149.6
Q ss_pred CCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcceehH
Q 030761 4 VVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGG 83 (172)
Q Consensus 4 ~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~~G~ 83 (172)
+++|++|||+|++ ++.+.|.++++++.++++|+|+|+++.+||+.+++++++.+||+|||||+.++.++|+|||
T Consensus 2 ~~~t~~v~Da~~~------~~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G~ 75 (164)
T 1j3l_A 2 EARTTDLSDLYPE------GEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGG 75 (164)
T ss_dssp CCCHHHHHHHCTT------SEEECSCSEECSSBSSEEEEEEEEECSSBCHHHHHHHTSCCBTEEEEEECTTCCSSBSCCH
T ss_pred cCCcccHhhcccc------cCCCCcceeeCCCCCEEEEEEEEEEeeCCchHHHHHHhccCCCcEEEEECCCCCCceeehH
Confidence 5899999999986 3457778888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcCCce
Q 030761 84 NLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDGI 163 (172)
Q Consensus 84 l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~dGV 163 (172)
+|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|+ |++|+|||+||||+|||
T Consensus 76 ~la~~a~~~G~~GiVidG~vRD~~~i~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~~g-----Gv~V~PGD~i~aD~dGV 150 (164)
T 1j3l_A 76 NLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVL-----GVEVLPGSFLLADEDGL 150 (164)
T ss_dssp HHHHHHHHTTBCEEEEESEECCHHHHTTSSSEEEESEECSSBCBCSCCCEESCCEEET-----TEEECTTCEEEEETTEE
T ss_pred HHHHHHHHCCCeEEEecCcccCHHHHhcCCCcEEEeecCCCCCccceeeeeCCCEEEC-----CEEECCCCEEEECCCeE
Confidence 9999999999999999999999999999999999999999988888899999999999 99999999999999999
Q ss_pred EEecCCcC
Q 030761 164 LVSKSELS 171 (172)
Q Consensus 164 vviP~~l~ 171 (172)
||||++|.
T Consensus 151 vviP~~l~ 158 (164)
T 1j3l_A 151 LLLPEPPS 158 (164)
T ss_dssp EEESSSCC
T ss_pred EEEChhhc
Confidence 99999985
No 5
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=100.00 E-value=8e-53 Score=331.40 Aligned_cols=159 Identities=37% Similarity=0.702 Sum_probs=151.3
Q ss_pred CCCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcceeh
Q 030761 3 GVVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVG 82 (172)
Q Consensus 3 ~~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~~G 82 (172)
.+++|++|||+|.+ + ++.+.|.++++++..+++|+|+|||+.+||+.+++++++.+||+|||||+.++.++|+||
T Consensus 4 ~~~~tadl~D~l~~-~----~~v~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~A~~G 78 (174)
T 1vi4_A 4 MRDITPDLCDKYES-Q----VTLLNLPLQNFGQRSAFWGEIVTVRCYHDNSKVRDVLSQNGKGKVLVVDGHGSCHKALMG 78 (174)
T ss_dssp CCCCHHHHHHHSGG-G----CEECCCCCEECSSCSCEEEEEEEEECSSCCHHHHHHHTSCCTTEEEEEECTTCCSSEEEC
T ss_pred ccccHHHHHHHhhc-c----cccccccceECCCCCEEEEEEEEEEEeCccHHHHHHHhccCCCEEEEEECCCCCCceehH
Confidence 46899999999987 2 356788899999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcCCc
Q 030761 83 GNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADSDG 162 (172)
Q Consensus 83 ~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~dG 162 (172)
|+|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|+ |++|+|||+||||+||
T Consensus 79 ~~la~~a~~~G~aGiVidG~vRD~~~l~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~ig-----Gv~V~PGD~I~aD~dG 153 (174)
T 1vi4_A 79 DQLAILAIKNDWEGVIIYGAVRDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQ-----NQIVEPGDYLYADWNG 153 (174)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCHHHHTTSSSEEEEEEECSCCCCCCSCCEESCCEEET-----TEEECTTSEEEEETTE
T ss_pred HHHHHHHHHCCCeEEEeccccCCHHHHHhCCCCeEEeecCCCCCCCCCcceeCCCEEEC-----CEEECCCCEEEEcCCe
Confidence 99999999999999999999999999999999999999999988887899999999999 9999999999999999
Q ss_pred eEEecCCcC
Q 030761 163 ILVSKSELS 171 (172)
Q Consensus 163 VvviP~~l~ 171 (172)
|||||++|+
T Consensus 154 VvviP~~l~ 162 (174)
T 1vi4_A 154 ILMSETALD 162 (174)
T ss_dssp EEEESSCCC
T ss_pred EEEEChHHc
Confidence 999999986
No 6
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=100.00 E-value=4.4e-51 Score=323.69 Aligned_cols=156 Identities=38% Similarity=0.736 Sum_probs=146.7
Q ss_pred CCCCCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeecCcHHHHHHHhhCCCCcEEEEEcCCCCCcce
Q 030761 1 MAGVVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCAL 80 (172)
Q Consensus 1 ~l~~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~~~~~~~G~VlVid~~g~~~~a~ 80 (172)
.|++++|++|||+|.. +++.+.|.++++++..+++|+|+||++.+||+.+++++++++||+|||||++++.++|+
T Consensus 28 ~L~~~~t~dv~Dal~~-----~~~~~~~~i~~~~~~~~~~G~A~TV~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~A~ 102 (183)
T 1nxj_A 28 AISFRPTADLVDDIGP-----DVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTAL 102 (183)
T ss_dssp CCCCCCHHHHHHHHCT-----TCEECCCCCEECSSBSCEEEEEEEEECSSBCHHHHHHHHSCCSSCEEEEECTTCCSSEE
T ss_pred HhcCCCHHHHHhhhhc-----ccCccCcceeECCCCCEEEEEEEEEEEeCCchHHHHHHHhcCCCCEEEEECCCCCCcee
Confidence 3778999999999962 23457778888888899999999999999999999999999999999999999999999
Q ss_pred ehHHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEcC
Q 030761 81 VGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYADS 160 (172)
Q Consensus 81 ~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD~ 160 (172)
|||+|+++|++|||+|+|+||++||++||++++|||||+|++|.++.++.++++|+||+|| |++|+|||+|+||+
T Consensus 103 ~G~~la~~a~~~G~aGiVidG~vRD~~ei~~l~fPV~a~g~~p~~~~~~~~g~~nvPV~ig-----Gv~V~PGD~I~aD~ 177 (183)
T 1nxj_A 103 VGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLG-----GVTFVPGDIAYSDD 177 (183)
T ss_dssp ECHHHHHHHHHHTCCEEEEEEEESCHHHHTTSSSEEEEEEECCSBCBCSCCSEESCCEEET-----TEEECTTSEEEECS
T ss_pred eHHHHHHHHHHCCCcEEEeccccCCHHHHhcCCCcEEEeeeCCCCCCCCccceeCCCEEEC-----CEEECCCCEEEECC
Confidence 9999999999999999999999999999999999999999999988888899999999999 99999999999999
Q ss_pred CceEEe
Q 030761 161 DGILVS 166 (172)
Q Consensus 161 dGVvvi 166 (172)
||||||
T Consensus 178 dGVVvI 183 (183)
T 1nxj_A 178 DGIIVV 183 (183)
T ss_dssp SCEEEC
T ss_pred CeEEEC
Confidence 999996
No 7
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=100.00 E-value=5.7e-51 Score=334.85 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=149.0
Q ss_pred CCCCCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeec-CcHHHHHHHhhCCCCcEEEEEcCCCCCcc
Q 030761 1 MAGVVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFE-DNVLVRELLETRGEGKVLVIDGGGSMRCA 79 (172)
Q Consensus 1 ~l~~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~-d~~~~~~~~~~~~~G~VlVid~~g~~~~a 79 (172)
+|++++|++|||+|.++++ +.|.++++.+..+++|+|+||++.+ ||+.+++++++++||+|||||++++.++|
T Consensus 25 ~l~~~~tatv~dal~r~g~------~~~~i~p~~~~~~~~G~A~TV~~~p~dn~~~~~ai~~~~~G~VlVvd~~g~~~~A 98 (238)
T 3noj_A 25 ALGRLGVATVHEAQNRKGL------LSSKMRPIQQGTSLAGSAVTVLVAPGDNWMFHVAVEQCRPGDVLVVSPSSPCTDG 98 (238)
T ss_dssp HHHHHCHHHHHHHTTSCCB------CCTTCEESSSSCCEEEEEEEEEECTTBCHHHHHHHTTCCTTEEEEEEESSCCCSB
T ss_pred HhhCCChhHHHHHhhccCC------CchhceECCCCCeEEEEEEEEEEECCCcHHHHHHHHhcCCCCEEEEECCCCCCeE
Confidence 3678999999999987543 4466777877889999999999985 89999999999999999999999999999
Q ss_pred eehHHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCCccceeceeEEEeeeccCCeEEccCCEEEEc
Q 030761 80 LVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKKGHGDKHVPVYIAGVYIAGSFIRDGEWLYAD 159 (172)
Q Consensus 80 ~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~~~~~~~vpV~ig~~~~~gv~V~pGD~v~aD 159 (172)
+|||+|+++|+++||+|+|+||+|||+++|++++|||||+|++|.++.+..++++|+||+|| |++|+|||+||||
T Consensus 99 ~~G~~la~~a~~~G~aGiVidG~vRD~~~l~~~~fPV~a~g~~p~~~~k~~~g~invPV~ig-----Gv~V~PGD~V~aD 173 (238)
T 3noj_A 99 YFGDLLATSLQARGVRALIVDAGVRDTQTLRDMGFAVWARAINAQGTVKETLGSVNLPVICG-----GQLINPGDIVVAD 173 (238)
T ss_dssp CCCHHHHHHHHHTTCCEEEEEEEECCHHHHHHHTCEEEEEEECCCCCBCCSCCEESSCEEET-----TEEECTTCEEEEE
T ss_pred ehHHHHHHHHHHCCCcEEEeecccCCHHHHHhCCCCEEEeecCCCCCCCCCeeeeCCCEEEC-----CEEECCCCEEEEc
Confidence 99999999999999999999999999999999999999999999988777899999999999 9999999999999
Q ss_pred CCceEEecCCcC
Q 030761 160 SDGILVSKSELS 171 (172)
Q Consensus 160 ~dGVvviP~~l~ 171 (172)
+|||||||++++
T Consensus 174 ~dGVvviP~~~a 185 (238)
T 3noj_A 174 DDGVVVVRRDEC 185 (238)
T ss_dssp TTEEEEECGGGH
T ss_pred CCeEEEEcHHHH
Confidence 999999999864
No 8
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.9e-50 Score=331.77 Aligned_cols=162 Identities=23% Similarity=0.335 Sum_probs=142.5
Q ss_pred CCCCCChhhHhHhhhccccCCceecccccceecCCCceEEEEEEEEEeec-CcHHHH----HHHhhCCCCcEEEEEcCCC
Q 030761 1 MAGVVATAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFE-DNVLVR----ELLETRGEGKVLVIDGGGS 75 (172)
Q Consensus 1 ~l~~~~t~~v~Dal~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~-d~~~~~----~~~~~~~~G~VlVid~~g~ 75 (172)
+|++++|++|||+|+++++.+.. |.++++.+..+++|+|+||++.+ |++..+ +++++++||||||||++++
T Consensus 19 ~l~~~~ta~v~Dal~~~g~~~~~----~~i~p~~~~~~~~G~A~TV~~~p~d~~~~~~~~~~~id~~~~GdVlVvd~~g~ 94 (244)
T 3k4i_A 19 ECEHLDTASLSDALDSLGIDGGL----PGIASQVPGTRCVGIAFTVQYQPVDASEGFRGAANYIDQVPSGSVIVSSNSGR 94 (244)
T ss_dssp HHTTCCHHHHHHHHHHTTCCCBC----TTCEECSTTCCEEEEEEEEEEEEC----------CGGGGCCTTEEEEEECTTC
T ss_pred HhcCCChHHHHHHHHhcCCcccC----ccceECCCCCeEEEEEEEEEEecCCCchhhhhhHHHHHcCCCCeEEEEECCCC
Confidence 47899999999999998875543 55666677889999999999997 444444 3599999999999999999
Q ss_pred CCcceehHHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCC-CccceeceeEEEeeeccCCeEEccCC
Q 030761 76 MRCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNK-KGHGDKHVPVYIAGVYIAGSFIRDGE 154 (172)
Q Consensus 76 ~~~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~-~~~~~~~vpV~ig~~~~~gv~V~pGD 154 (172)
.++|+|||+|+++|+++||+|+||||+|||+++|++++|||||+|++|..+.. ..++++|+||+|| |++|+|||
T Consensus 95 ~~~A~~G~lla~~a~~~G~aGvVidG~vRD~~ei~~~~fPV~a~g~~p~~~~~~~~~g~~nvPV~ig-----Gv~V~PGD 169 (244)
T 3k4i_A 95 HDCTVWGDIMTHFALANGIKGTVIDGVARDIDTVINCNYPLFSRGRFMQSAKNRTQLKAVQVPLVID-----GITIQPGD 169 (244)
T ss_dssp SSSBSCCHHHHHHHHHHTCCEEEEESBBSCHHHHHHTTCCEEESCBCCCCSTTTEEEEEESSCEEET-----TEEECTTC
T ss_pred CCeEehHHHHHHHHHHCCCeEEEeCCccCCHHHHHhCCCCEEEeecCCCCCCCccccceecccEEEC-----CEEECCCC
Confidence 99999999999999999999999999999999999999999999999975543 4789999999999 99999999
Q ss_pred EEEEcCCceEEecCCcC
Q 030761 155 WLYADSDGILVSKSELS 171 (172)
Q Consensus 155 ~v~aD~dGVvviP~~l~ 171 (172)
+||||+|||||||++++
T Consensus 170 ~V~aD~dGVVviP~~~a 186 (244)
T 3k4i_A 170 LMVCDGSGCVVVPQQLA 186 (244)
T ss_dssp EEEEETTEEEEECGGGH
T ss_pred EEEEcCCeEEEEcHHHH
Confidence 99999999999999874
No 9
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-49 Score=324.76 Aligned_cols=163 Identities=20% Similarity=0.160 Sum_probs=143.1
Q ss_pred CCCCCChhhHhHhhhc-cccCCceecccccceec--CCCceEEEEEEEEEeecCcHH--HHHHHhhCCCCcEEEEEcCCC
Q 030761 1 MAGVVATAEACDSNAA-LLASGDLRVLQPVFQIY--GQCRSFSGPVVTLKVFEDNVL--VRELLETRGEGKVLVIDGGGS 75 (172)
Q Consensus 1 ~l~~~~t~~v~Dal~~-~~~~g~~~~l~p~~~~~--~~~~~~~G~A~Tv~~~~d~~~--~~~~~~~~~~G~VlVid~~g~ 75 (172)
+|++++||+|||+|++ +++.. ..+.|.++++ ++..+++|+|+||++.+++.. .++++++++||+|||||++++
T Consensus 6 ~l~~~~t~~v~Dal~~~~g~~~--~~~~~~~~~~~~g~~~~~~G~A~TV~~~~~~~~~~~~~aid~~~~G~VlVvd~~g~ 83 (240)
T 2c5q_A 6 KLQRFSTCDISDGLLNVYNIPT--GGYFPNLTAISPPQNSSIVGTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPH 83 (240)
T ss_dssp HHTTSCHHHHHHHHHHHHCCTT--TTEECSCEEEECCSSSCEEEEEEEEEEEETTSSSCCCCCGGGCCTTEEEEEEECGG
T ss_pred HhcCCCHHHHHHHHHHhhCcCc--cccCcceeECccCCCCEEEEEEEEEEEECCCCcHHHHHHHhcCCCCEEEEEECCCC
Confidence 4789999999999998 77631 1223344444 346799999999999975532 457999999999999999888
Q ss_pred CC----------cceehHHHHHHHHHCCCcEEEecCccCCHHHHhcCCCcEEEcceecCCCCCC-ccceeceeEEEeeec
Q 030761 76 MR----------CALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGCGIGVRALGSHPLKSNKK-GHGDKHVPVYIAGVY 144 (172)
Q Consensus 76 ~~----------~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pvfa~g~~p~~~~~~-~~~~~~vpV~ig~~~ 144 (172)
.+ +|+|||+|+++|++|||+|+|+||+|||+++|++++|||||+|++|..+.+. +++++|+||+|+
T Consensus 84 ~~~~~~~~~~~~~A~~G~l~a~~a~~~G~aGiVidG~vRD~~el~~l~~PV~a~g~~p~~~~~~~~~g~~nvPV~ig--- 160 (240)
T 2c5q_A 84 LQSQFHPFIKITQAMYGGLMSTRAQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNVQLKIL--- 160 (240)
T ss_dssp GBCSSTTCBSCCSCSCCHHHHHHHHHTTCCEEEEEEEECCHHHHHHHTCCEEEEEECSSCSTTTEEEEEESCCEEEE---
T ss_pred cccccccccccceeeehHHHHHHHHHcCCeEEEecCCcCCHHHHhcCCCcEEEeecCCCCCCCcccccccCccEEEC---
Confidence 88 9999999999999999999999999999999999999999999999887776 699999999999
Q ss_pred cCC-----eEEccCCEEEEcCCceEEecC--Cc
Q 030761 145 IAG-----SFIRDGEWLYADSDGILVSKS--EL 170 (172)
Q Consensus 145 ~~g-----v~V~pGD~v~aD~dGVvviP~--~l 170 (172)
| ++|+|||+||||+|||||||+ ++
T Consensus 161 --G~~~~~v~V~PGD~I~aD~dGVVviP~~~~~ 191 (240)
T 2c5q_A 161 --TSDGVTQTICPGDYIAGDNNGIVRIPVQETD 191 (240)
T ss_dssp --CTTSCEEEECTTCEEEEETTEEEEECTTTSC
T ss_pred --CcCcceEEECCCCEEEEcCCcEEEeCCcHHH
Confidence 9 999999999999999999999 65
No 10
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=38.49 E-value=22 Score=27.80 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=32.1
Q ss_pred cceehHHHHHHHHHCCCcEEEecCccCCHHHHhcC-CCcEEE
Q 030761 78 CALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGC-GIGVRA 118 (172)
Q Consensus 78 ~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~pvfa 118 (172)
...-=..||.++.+.|+.|+-+ |...|+.++++. +.||+.
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig 74 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRI-EGIENLRTVRPHLSVPIIG 74 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE-ESHHHHHHHGGGCCSCEEE
T ss_pred CcchHHHHHHHHHHCCCcEEEE-CCHHHHHHHHHhcCCCEEE
Confidence 3444567888889999999998 567899999876 899985
No 11
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=30.67 E-value=35 Score=26.61 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=31.9
Q ss_pred cceehHHHHHHHHHCCCcEEEecCccCCHHHHhcC-CCcEEE
Q 030761 78 CALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGC-GIGVRA 118 (172)
Q Consensus 78 ~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~pvfa 118 (172)
...-=..||.++.+.|+.|+.+ |...|+.++++. +.||+.
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig 74 (232)
T 3igs_A 34 KPEIVAAMALAAEQAGAVAVRI-EGIDNLRMTRSLVSVPIIG 74 (232)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE-ESHHHHHHHHTTCCSCEEE
T ss_pred CcchHHHHHHHHHHCCCeEEEE-CCHHHHHHHHHhcCCCEEE
Confidence 3445567888889999999888 457889999876 899975
No 12
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=24.83 E-value=36 Score=26.55 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=32.5
Q ss_pred CcceehHHHHHHHHHCCCcEEEecCccCCHHHHhcC-CCc
Q 030761 77 RCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGC-GIG 115 (172)
Q Consensus 77 ~~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~p 115 (172)
++++....+..+|...|...+.+-|...|.++++++ ++|
T Consensus 113 dag~a~qnl~LaA~slGLgsc~ig~~~~~~~~v~~~L~lp 152 (249)
T 3n2s_A 113 DAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTP 152 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEeeeccccccHHHHHHHhCcC
Confidence 467778899999999999999999877788888774 665
No 13
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=24.72 E-value=36 Score=25.15 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=11.3
Q ss_pred EEEEcCCceEEec
Q 030761 155 WLYADSDGILVSK 167 (172)
Q Consensus 155 ~v~aD~dGVvviP 167 (172)
+++.|.|||.++.
T Consensus 41 I~ItDrDGVpi~k 53 (143)
T 3cpt_A 41 IVVSDRDGVPVIK 53 (143)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEECCCCcEEEE
Confidence 7899999999874
No 14
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=24.72 E-value=43 Score=26.08 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=32.2
Q ss_pred CcceehHHHHHHHHHCCCcEEEecCccCCHHHHhcC-CCc
Q 030761 77 RCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEINGC-GIG 115 (172)
Q Consensus 77 ~~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~p 115 (172)
++++....+..+|...|...+.+-|...|-++++++ ++|
T Consensus 113 dag~a~qnl~LaA~alGLgsc~ig~~~~~~~~v~~~L~lp 152 (255)
T 1zch_A 113 DAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELP 152 (255)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCcEeeecccccCHHHHHHHhCcC
Confidence 567888999999999999999998876688887763 665
No 15
>1r61_A Metal-dependent hydrolase; zinc-dependent hydrolase, structural genomics, cyclase, PSI, protein structure initiative; 2.50A {Geobacillus stearothermophilus} SCOP: c.8.8.1 PDB: 3krv_A
Probab=23.16 E-value=1e+02 Score=23.43 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=49.3
Q ss_pred ceEEEEEEEEEeecCc-HHHHHHHh--hCCCCcEEEEEcCCC------CCcceehHHHHHHHHHCCCcEEEecCccCC
Q 030761 37 RSFSGPVVTLKVFEDN-VLVRELLE--TRGEGKVLVIDGGGS------MRCALVGGNLGQLAHNNGWSGIVVNGCIRD 105 (172)
Q Consensus 37 ~~~~G~A~Tv~~~~d~-~~~~~~~~--~~~~G~VlVid~~g~------~~~a~~G~l~a~~a~~~G~~G~VidG~vRD 105 (172)
..++|+++-+.+.... ....+-++ .+++||+|++-.+-+ .+...+..-.+.....+|++++-+|..-=|
T Consensus 71 ~~~~g~~vviD~~~~~~~It~~dl~~~~i~~gd~vlirTg~~~~~~y~~~~pgls~eaa~~L~~~~v~~vG~D~~s~d 148 (207)
T 1r61_A 71 NDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIE 148 (207)
T ss_dssp TTTEEEEEEEECTTCCSEECHHHHTTSCCCTTCEEEEECGGGGCCSCCTTCCEECHHHHHHHHHHTCSEEECSSSCSC
T ss_pred hHccceEEEEEEeCCCCccCHHHHHhccCCCCcEEEEECCCCCchhhcCCCcccCHHHHHHHHHCCCCEEEEcCCccC
Confidence 4689999999887422 11112222 478999999976522 245678889999999999999999986444
No 16
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=22.64 E-value=25 Score=29.63 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.2
Q ss_pred HHHHHHHCCCcEEEecCccCCHH
Q 030761 85 LGQLAHNNGWSGIVVNGCIRDVD 107 (172)
Q Consensus 85 ~a~~a~~~G~~G~VidG~vRD~~ 107 (172)
++..+.++|....++-|+|||.=
T Consensus 2 ~~~~~~~~g~~~y~VGG~VRD~l 24 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDIL 24 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHH
T ss_pred hHHHHHHcCCeEEEEChHHHHHH
Confidence 46788999999999999999963
No 17
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=22.37 E-value=44 Score=25.75 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.0
Q ss_pred CcceehHHHHHHHHHCCCcEEEecCccCCHHHHhc-CCCc
Q 030761 77 RCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEING-CGIG 115 (172)
Q Consensus 77 ~~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 115 (172)
++++..+.+..+|...|...+.+.|...|-+++++ +++|
T Consensus 107 d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp 146 (240)
T 1f5v_A 107 DTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLP 146 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCCC
Confidence 46788899999999999999999887667777776 3654
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=22.18 E-value=73 Score=22.96 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHHHhhCCCCcEEEEEcCCCCCcceehHHHHH
Q 030761 54 LVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQ 87 (172)
Q Consensus 54 ~~~~~~~~~~~G~VlVid~~g~~~~a~~G~l~a~ 87 (172)
.+..+++.++|||++++-+.|+ ..-+++.+..
T Consensus 128 ai~~~~~~~~~gDvVLv~Gsg~--~~~~~~~l~~ 159 (163)
T 3mvn_A 128 LVMRIVQQAKPNDHILIMSNGA--FGGIHQKLLT 159 (163)
T ss_dssp HHHHHHHHCCTTCEEEEECSSC--GGGHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHH
Confidence 5566777899999999987765 4455555543
No 19
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=21.43 E-value=47 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=31.7
Q ss_pred CcceehHHHHHHHHHCCCcEEEecCccCCHHHHhc-CCCc
Q 030761 77 RCALVGGNLGQLAHNNGWSGIVVNGCIRDVDEING-CGIG 115 (172)
Q Consensus 77 ~~a~~G~l~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 115 (172)
++++..+.+..+|...|...+.+.|...|-+++++ +++|
T Consensus 107 d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp 146 (240)
T 1bkj_A 107 DSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLP 146 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccCHHHHHHHhCcC
Confidence 57888899999999999999999876557777776 3654
Done!