Query 030765
Match_columns 171
No_of_seqs 86 out of 101
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 04:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04667 Endosulfine: cAMP-reg 99.9 3.3E-27 7.2E-32 172.9 6.6 84 49-132 1-85 (86)
2 KOG4076 Regulator of ATP-sensi 99.4 1.2E-13 2.6E-18 108.3 4.6 65 36-100 5-77 (121)
3 cd07756 CYTH-like_Pase_CHAD Un 44.0 9.3 0.0002 31.0 0.5 16 84-99 38-53 (197)
4 PF04504 DUF573: Protein of un 38.2 13 0.00027 27.6 0.4 38 50-87 49-90 (98)
5 cd07374 CYTH-like_Pase CYTH-li 36.6 13 0.00029 28.2 0.4 15 84-98 37-51 (174)
6 PF10802 DUF2540: Protein of u 33.8 25 0.00055 26.2 1.4 16 54-69 46-61 (75)
7 PF01179 Cu_amine_oxid: Copper 22.4 28 0.00061 31.8 -0.1 18 82-99 72-89 (413)
8 COG3025 Uncharacterized conser 20.2 42 0.00092 31.7 0.6 38 57-99 17-54 (432)
9 PF11078 Optomotor-blind: Opto 17.5 1.4E+02 0.003 22.6 2.7 46 84-132 7-57 (81)
10 PF01928 CYTH: CYTH domain; I 16.9 53 0.0012 24.7 0.4 15 84-98 38-52 (185)
No 1
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=99.94 E-value=3.3e-27 Score=172.87 Aligned_cols=84 Identities=36% Similarity=0.549 Sum_probs=77.2
Q ss_pred cCCCCCChHHHHHHHHHhcCCCCCCcccccccchhhccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 030765 49 NLMQPSSQQEEEIIKKKYAGIVPKKRPLISKDHERAFFDSADWALGKQGGQSQKPKGPLEPLRPKLQPTPH-QQVRSRRS 127 (171)
Q Consensus 49 ~~~~~s~~eEE~~L~kKYGgL~PKK~pLisKd~ERKYFDSADWALgKqG~~~qkp~~piE~LrPKLqpTP~-~q~~~Rr~ 127 (171)
+++++++++||++|++|||+|++++.+|++|+++|||||||||||+||+........+++.++|++.+|++ +++.+||+
T Consensus 1 ~~~~~~~~~eE~kl~~kYG~l~~~~~~L~kkl~~rKYFDSgDyam~Ka~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~ 80 (86)
T PF04667_consen 1 QVDISSLSEEEAKLKAKYGKLPPKKKLLQKKLQKRKYFDSGDYAMAKAGKKSSQGPGPTGKLPPPLPNPPHVSQSIPRRP 80 (86)
T ss_pred CcccccccHHHHHHHHHcCCCCCCchhhhhhhccccccchHHHHHHHhhcccccCcCcCcCCCCCCCCCcccccccCCCC
Confidence 46899999999999999999999998999999999999999999999999755444499999999999999 99999999
Q ss_pred CccCC
Q 030765 128 AYAPS 132 (171)
Q Consensus 128 a~a~~ 132 (171)
+|+++
T Consensus 81 ~~~s~ 85 (86)
T PF04667_consen 81 TTTSP 85 (86)
T ss_pred CCCCC
Confidence 99986
No 2
>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-13 Score=108.26 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=52.8
Q ss_pred cCCCCCccccccc-------cCCCCCChHHHHHHHHHhcCCCCCCcccccccch-hhccchhhhhhhhcCCCC
Q 030765 36 DQEPNDSEKNIDE-------NLMQPSSQQEEEIIKKKYAGIVPKKRPLISKDHE-RAFFDSADWALGKQGGQS 100 (171)
Q Consensus 36 ~~~p~~s~~~~~~-------~~~~~s~~eEE~~L~kKYGgL~PKK~pLisKd~E-RKYFDSADWALgKqG~~~ 100 (171)
.-+|++++.++.. .++.....++|.++++.||+|+.+++.|.+|... |||||||||||.|++..+
T Consensus 5 ~~~~~ss~~~~~~~~~~~~~~~~ek~~epkl~~ky~~~GklP~~sd~l~krlQkgrKyFDSGDYam~KAk~~~ 77 (121)
T KOG4076|consen 5 VLSPASSEQDLETGEIETEGTSPEKKEEPKLKKKYPSYGKLPGGSDFLRKRLQKGRKYFDSGDYAMAKAKMKN 77 (121)
T ss_pred ccCccccchhhhcccccccccChhhhhCHHHHHHHHHhCCCCcccHHHHHHHHhcccccccchHHHHHhhccc
Confidence 3467777776643 3445667788899999999999999888888654 999999999999999974
No 3
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=44.04 E-value=9.3 Score=31.04 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.2
Q ss_pred hccchhhhhhhhcCCC
Q 030765 84 AFFDSADWALGKQGGQ 99 (171)
Q Consensus 84 KYFDSADWALgKqG~~ 99 (171)
-|||+.||.|.+++..
T Consensus 38 ~YfDTpd~~L~~~~~a 53 (197)
T cd07756 38 TYFDTPDLALRRAGIA 53 (197)
T ss_pred eeeeCcChHHHhCCCE
Confidence 4999999999999874
No 4
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=38.17 E-value=13 Score=27.61 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=27.4
Q ss_pred CCCCCChHHHHHHHHHhcCCCCC----Ccccccccchhhccc
Q 030765 50 LMQPSSQQEEEIIKKKYAGIVPK----KRPLISKDHERAFFD 87 (171)
Q Consensus 50 ~~~~s~~eEE~~L~kKYGgL~PK----K~pLisKd~ERKYFD 87 (171)
++...+.+-=+.|++||..+..+ +.+-+.+.|+|+-|+
T Consensus 49 ~s~~Ql~~KirrLK~Ky~~~~~k~~~g~~~~~~~~hd~~~f~ 90 (98)
T PF04504_consen 49 VSKNQLYDKIRRLKKKYRNAVKKSKNGKDPSFSKPHDRRLFE 90 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccCcCCCCCCHhHHHHHH
Confidence 33344555567899999998766 245678889998886
No 5
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=36.64 E-value=13 Score=28.17 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.7
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|++|.+.+.
T Consensus 37 ~YfDT~d~~l~~~~l 51 (174)
T cd07374 37 IYFDTPDLRLARAGL 51 (174)
T ss_pred eEecCccchhhhCCc
Confidence 399999998888765
No 6
>PF10802 DUF2540: Protein of unknown function (DUF2540); InterPro: IPR024254 This family of proteins with unknown function appears to be restricted to Methanococcus.; PDB: 2EFV_A.
Probab=33.78 E-value=25 Score=26.18 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=12.5
Q ss_pred CChHHHHHHHHHhcCC
Q 030765 54 SSQQEEEIIKKKYAGI 69 (171)
Q Consensus 54 s~~eEE~~L~kKYGgL 69 (171)
.++++|..+..|||+.
T Consensus 46 tLs~~E~~IieKyGKa 61 (75)
T PF10802_consen 46 TLSDEEEKIIEKYGKA 61 (75)
T ss_dssp E--HHHHHHHHHHGGG
T ss_pred EecHHHHHHHHHHhHH
Confidence 5789999999999964
No 7
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=22.40 E-value=28 Score=31.83 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=13.7
Q ss_pred hhhccchhhhhhhhcCCC
Q 030765 82 ERAFFDSADWALGKQGGQ 99 (171)
Q Consensus 82 ERKYFDSADWALgKqG~~ 99 (171)
-+.|||+|||-||.....
T Consensus 72 ~~~~~D~geyG~G~~~~~ 89 (413)
T PF01179_consen 72 RKNAFDSGEYGLGSMANS 89 (413)
T ss_dssp H-EEEHHHHTTTTTTBE-
T ss_pred ccccccccccccCccccc
Confidence 367999999999986654
No 8
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=42 Score=31.74 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCCCCcccccccchhhccchhhhhhhhcCCC
Q 030765 57 QEEEIIKKKYAGIVPKKRPLISKDHERAFFDSADWALGKQGGQ 99 (171)
Q Consensus 57 eEE~~L~kKYGgL~PKK~pLisKd~ERKYFDSADWALgKqG~~ 99 (171)
.+......+|+.+. .....|.. -|||+.||+|.+++..
T Consensus 17 ~~l~~~L~~~~~~~-~~~~~L~n----~YyDTpd~~L~~~~~g 54 (432)
T COG3025 17 LALLSKLADYTISE-HTPQQLAN----IYYDTPDNWLRRHDMG 54 (432)
T ss_pred HHHHHHhhhcccCC-cchhhHhh----hhcCCchHHHHhCCce
Confidence 33444556666553 33233322 4999999999999864
No 9
>PF11078 Optomotor-blind: Optomotor-blind protein N-terminal region; InterPro: IPR021101 Optomotor-blind is one of the essential toolkit proteins for coordinating development in diverse animal taxa. In Drosophila, where it has been characterised in the most detail, it plays a key role in establishing the abdominal pigmentation pattern, in development of the central nervous system and leg and wing imaginal disc-formation []. This entry represents the N-terminal domain of the optomotor-blind protein in Drosophila and other flies. It does not include the T-box-containing transcription factor that plays a part in DNA-binding.
Probab=17.53 E-value=1.4e+02 Score=22.61 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=25.6
Q ss_pred hccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCccCC
Q 030765 84 AFFDSADWALGKQGGQSQKPKGPLEPLRPKLQPT-----PHQQVRSRRSAYAPS 132 (171)
Q Consensus 84 KYFDSADWALgKqG~~~qkp~~piE~LrPKLqpT-----P~~q~~~Rr~a~a~~ 132 (171)
-||-+|-.|---.+.....+-+--.+|.|||-|- |||.+ -.+|+.+
T Consensus 7 ~yfpaaalaa~ag~~ag~~~g~ypg~l~pk~~ph~~hphphh~l---g~~ytta 57 (81)
T PF11078_consen 7 PYFPAAALAALAGSGAGGHHGCYPGALIPKLPPHPAHPHPHHPL---GHAYTTA 57 (81)
T ss_pred CcChHHHHHHHhcCCCCCCCCccccccccCCCCCCCCCCCCCcC---CcccchH
Confidence 3888876553322222223455567899998776 34443 4556554
No 10
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=16.89 E-value=53 Score=24.66 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=13.5
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|+.|.+++.
T Consensus 38 ~Y~dt~~~~L~~~~~ 52 (185)
T PF01928_consen 38 TYFDTPDRDLRKAGI 52 (185)
T ss_dssp EEEEETTTHHHHTTS
T ss_pred EEEeCCChhHHhCCc
Confidence 499999999999886
Done!