Query 030765
Match_columns 171
No_of_seqs 86 out of 101
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 06:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m46_B IQ4, IQ4 motif from MYO 32.2 21 0.00073 21.1 1.5 18 3-20 4-21 (26)
2 2efv_A Hypothetical protein MJ 28.0 24 0.00082 26.1 1.5 16 54-69 59-74 (92)
3 2gfg_A BH2851; antiparallel ba 19.8 26 0.00089 26.5 0.4 16 84-99 39-54 (193)
4 3bhd_A Thtpase, thiamine triph 19.1 27 0.00093 27.3 0.4 16 84-99 57-72 (234)
5 3v85_A CYTH-like phosphatase; 18.9 26 0.0009 26.5 0.2 16 84-99 35-50 (210)
6 3tj7_A GBAA_1210 protein; stru 15.7 35 0.0012 26.6 0.2 15 84-98 39-53 (195)
7 2aca_A Putative adenylate cycl 13.6 46 0.0016 25.1 0.4 15 84-98 46-60 (189)
8 1ksi_A Copper amine oxidase; P 13.1 42 0.0014 31.2 0.0 17 83-99 291-307 (642)
9 1spu_A Copper amine oxidase; o 12.5 45 0.0015 31.4 -0.0 17 83-99 379-395 (727)
10 2een_A Hypothetical protein PH 12.2 39 0.0013 24.9 -0.4 15 84-98 33-47 (183)
No 1
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=32.18 E-value=21 Score=21.14 Aligned_cols=18 Identities=50% Similarity=0.505 Sum_probs=14.5
Q ss_pred cccchhHHHHHHHHHHHH
Q 030765 3 GTITNAEKEKEKEQEQEQ 20 (171)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (171)
-||||..|.-.||-.|.|
T Consensus 4 rtitnlqkkirkelkqrq 21 (26)
T 1m46_B 4 RTITNLQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 389999998888877765
No 2
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=27.97 E-value=24 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHhcCC
Q 030765 54 SSQQEEEIIKKKYAGI 69 (171)
Q Consensus 54 s~~eEE~~L~kKYGgL 69 (171)
.++++|..|..|||+.
T Consensus 59 tLsdeEe~IieKyGKa 74 (92)
T 2efv_A 59 TLTEEEEVIIQRLGKS 74 (92)
T ss_dssp ECCHHHHHHHHHHGGG
T ss_pred EecHHHHHHHHHHhHH
Confidence 5789999999999964
No 3
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=19.75 E-value=26 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=14.0
Q ss_pred hccchhhhhhhhcCCC
Q 030765 84 AFFDSADWALGKQGGQ 99 (171)
Q Consensus 84 KYFDSADWALgKqG~~ 99 (171)
-|||+.|..|.+++..
T Consensus 39 ~YfDTpd~~L~~~~~a 54 (193)
T 2gfg_A 39 HYFETDDFQLKKQSSA 54 (193)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EeeeCCCHHHHhCCCE
Confidence 4999999999998863
No 4
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=19.13 E-value=27 Score=27.34 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=13.9
Q ss_pred hccchhhhhhhhcCCC
Q 030765 84 AFFDSADWALGKQGGQ 99 (171)
Q Consensus 84 KYFDSADWALgKqG~~ 99 (171)
-|||+.|+.|.+++..
T Consensus 57 ~YfDTpd~~L~~~~~a 72 (234)
T 3bhd_A 57 TYYDTPELSLMQADHW 72 (234)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EEeeCCChHHHhCCcE
Confidence 5999999999988763
No 5
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=18.92 E-value=26 Score=26.45 Aligned_cols=16 Identities=25% Similarity=0.408 Sum_probs=13.8
Q ss_pred hccchhhhhhhhcCCC
Q 030765 84 AFFDSADWALGKQGGQ 99 (171)
Q Consensus 84 KYFDSADWALgKqG~~ 99 (171)
-|||+.|+.|.+++..
T Consensus 35 ~y~dt~~~~l~~~~~~ 50 (210)
T 3v85_A 35 TFFDTPKNDLSLRRAV 50 (210)
T ss_dssp EEEECTTCHHHHTTEE
T ss_pred EEEeCCCHHHHhCCcE
Confidence 4999999999998763
No 6
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=15.69 E-value=35 Score=26.56 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=13.7
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|..|.+++.
T Consensus 39 ~YfDTpd~~L~~~~~ 53 (195)
T 3tj7_A 39 HYFETPNSSLKEAGS 53 (195)
T ss_dssp EEEECTTCHHHHTTC
T ss_pred EEEeCCcHhHHhCCC
Confidence 499999999999986
No 7
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=13.58 E-value=46 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=13.1
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|+.|.+++.
T Consensus 46 ~YfDtp~~~L~~~~~ 60 (189)
T 2aca_A 46 WFYDTPQRTLTQQGK 60 (189)
T ss_dssp EEEECTTCHHHHTTC
T ss_pred EEEeCCCcchhhCCe
Confidence 499999999988765
No 8
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=13.14 E-value=42 Score=31.24 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.4
Q ss_pred hhccchhhhhhhhcCCC
Q 030765 83 RAFFDSADWALGKQGGQ 99 (171)
Q Consensus 83 RKYFDSADWALgKqG~~ 99 (171)
+.|||+|||-+|.....
T Consensus 291 k~~fD~GeyG~G~~a~~ 307 (642)
T 1ksi_A 291 KTFFDSGEFGFGLSTVS 307 (642)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeeeccccCccccccc
Confidence 46999999988776553
No 9
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=12.46 E-value=45 Score=31.39 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=13.5
Q ss_pred hhccchhhhhhhhcCCC
Q 030765 83 RAFFDSADWALGKQGGQ 99 (171)
Q Consensus 83 RKYFDSADWALgKqG~~ 99 (171)
+.|||+|||-+|.....
T Consensus 379 k~~fD~GeyG~G~~a~~ 395 (727)
T 1spu_A 379 KAYLDSGDYGMGTLTSP 395 (727)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeeeccCcCCcccccc
Confidence 57999999988775553
No 10
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=12.21 E-value=39 Score=24.91 Aligned_cols=15 Identities=7% Similarity=0.229 Sum_probs=12.9
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|+.|.+++.
T Consensus 33 ~YfDtp~~~L~~~~~ 47 (183)
T 2een_A 33 IYYQHPCRDFSKTDE 47 (183)
T ss_dssp EEEECSSSCHHHHTC
T ss_pred eEEcCCCccHHhCCe
Confidence 499999999888765
Done!