Query 030765
Match_columns 171
No_of_seqs 86 out of 101
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 06:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030765.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030765hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efva1 a.43.1.12 (A:6-87) Unc 40.5 4.9 0.00036 27.6 1.3 16 54-69 54-69 (82)
2 d1oh0a_ d.17.4.3 (A:) Delta-5- 38.1 2.9 0.00021 26.2 -0.2 11 83-93 115-125 (125)
3 d2jmua1 d.63.1.2 (A:2-224) Thi 31.8 5.4 0.00039 28.8 0.4 15 84-98 37-51 (223)
4 d1d6za1 b.30.2.1 (A:301-724) C 24.5 7.4 0.00054 32.2 -0.0 17 83-99 79-95 (424)
5 d3dm8a1 d.17.4.20 (A:1-135) Un 20.1 12 0.00088 23.7 0.4 12 83-94 120-131 (135)
6 d1w2za1 b.30.2.1 (A:207-647) C 16.1 15 0.0011 30.4 0.0 17 83-99 90-106 (441)
7 d1w6ga1 b.30.2.1 (A:212-628) C 13.0 18 0.0013 29.8 -0.3 17 83-99 83-99 (417)
8 d1nwwa_ d.17.4.8 (A:) Limonene 10.3 33 0.0024 22.0 0.4 10 83-92 127-136 (145)
9 d2v4ja3 d.134.1.1 (A:168-241,A 9.5 76 0.0055 22.7 2.3 28 114-141 149-176 (189)
10 d2do3a1 b.34.5.5 (A:462-523) T 9.2 28 0.002 22.3 -0.3 18 81-98 6-23 (62)
No 1
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=40.49 E-value=4.9 Score=27.62 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHhcCC
Q 030765 54 SSQQEEEIIKKKYAGI 69 (171)
Q Consensus 54 s~~eEE~~L~kKYGgL 69 (171)
.++++|+.+.+|||++
T Consensus 54 tLs~~Ee~IIeKyGKa 69 (82)
T d2efva1 54 TLTEEEEVIIQRLGKS 69 (82)
T ss_dssp ECCHHHHHHHHHHGGG
T ss_pred EecHHHHHHHHHHHHH
Confidence 5789999999999965
No 2
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=38.09 E-value=2.9 Score=26.23 Aligned_cols=11 Identities=9% Similarity=0.540 Sum_probs=9.3
Q ss_pred hhccchhhhhh
Q 030765 83 RAFFDSADWAL 93 (171)
Q Consensus 83 RKYFDSADWAL 93 (171)
|.|||++|++|
T Consensus 115 ~~y~d~~~~~~ 125 (125)
T d1oh0a_ 115 QAYWSEVNLSV 125 (125)
T ss_dssp EEECCGGGEEC
T ss_pred EEEECHHHCcC
Confidence 78999999865
No 3
>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.84 E-value=5.4 Score=28.81 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=13.5
Q ss_pred hccchhhhhhhhcCC
Q 030765 84 AFFDSADWALGKQGG 98 (171)
Q Consensus 84 KYFDSADWALgKqG~ 98 (171)
-|||+.|+.|.+++.
T Consensus 37 ~YfDtpd~~L~~~~~ 51 (223)
T d2jmua1 37 TYYDTSELSLMLSDH 51 (223)
T ss_dssp EEEECTTSHHHHTTC
T ss_pred EEEcCCChhHHhCCc
Confidence 499999999998876
No 4
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=24.48 E-value=7.4 Score=32.18 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.2
Q ss_pred hhccchhhhhhhhcCCC
Q 030765 83 RAFFDSADWALGKQGGQ 99 (171)
Q Consensus 83 RKYFDSADWALgKqG~~ 99 (171)
++|||+|+|.||.....
T Consensus 79 ~~~~D~Ge~G~G~~a~~ 95 (424)
T d1d6za1 79 KAYLDSGDYGMGTLTSP 95 (424)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEeccccCcCccccc
Confidence 47999999999987664
No 5
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=20.06 E-value=12 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.6
Q ss_pred hhccchhhhhhh
Q 030765 83 RAFFDSADWALG 94 (171)
Q Consensus 83 RKYFDSADWALg 94 (171)
|.||||.||+..
T Consensus 120 ~~y~D~~~~~~q 131 (135)
T d3dm8a1 120 RMVLDTFDLVEQ 131 (135)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEeCHHHHHHH
Confidence 679999999643
No 6
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=16.05 E-value=15 Score=30.42 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=14.5
Q ss_pred hhccchhhhhhhhcCCC
Q 030765 83 RAFFDSADWALGKQGGQ 99 (171)
Q Consensus 83 RKYFDSADWALgKqG~~ 99 (171)
+.|||+|+|-||.....
T Consensus 90 k~~~D~g~yG~G~~a~~ 106 (441)
T d1w2za1 90 KTFFDSGEFGFGLSTVS 106 (441)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEcccCccccccccc
Confidence 57999999999987764
No 7
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=13.03 E-value=18 Score=29.75 Aligned_cols=17 Identities=18% Similarity=0.684 Sum_probs=14.7
Q ss_pred hhccchhhhhhhhcCCC
Q 030765 83 RAFFDSADWALGKQGGQ 99 (171)
Q Consensus 83 RKYFDSADWALgKqG~~ 99 (171)
+.|||+|+|-||.....
T Consensus 83 ~~~~D~ge~G~G~~a~~ 99 (417)
T d1w6ga1 83 QNYFDTGEYLVGQYANS 99 (417)
T ss_dssp CEEECCCCCCGGGGBCC
T ss_pred ceeEeccccchhhhccc
Confidence 47999999999998764
No 8
>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=10.26 E-value=33 Score=22.05 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=7.5
Q ss_pred hhccchhhhh
Q 030765 83 RAFFDSADWA 92 (171)
Q Consensus 83 RKYFDSADWA 92 (171)
|.|||.++|.
T Consensus 127 ~~Y~D~~~~~ 136 (145)
T d1nwwa_ 127 RDYFDLREFE 136 (145)
T ss_dssp EEECCHHHHH
T ss_pred EEEeCHHHHH
Confidence 5688888874
No 9
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=9.48 E-value=76 Score=22.68 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 030765 114 LQPTPHQQVRSRRSAYAPSDDEEDGGSN 141 (171)
Q Consensus 114 LqpTP~~q~~~Rr~a~a~~~~~~~~~~~ 141 (171)
|.|.|+.-.+||...|-.-.+||..|+-
T Consensus 149 l~~~~~mv~~p~~~py~~~~~~~~~~~~ 176 (189)
T d2v4ja3 149 IAPVPQHVKEPRTNPYIFFKEEEVPGGW 176 (189)
T ss_dssp CCCCGGGBSSCCSSCCCCCCGGGSTTCS
T ss_pred CCCChhhhCCCCCCCccCcccccCCCCc
Confidence 3568888899999999999988876653
No 10
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=28 Score=22.28 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.1
Q ss_pred chhhccchhhhhhhhcCC
Q 030765 81 HERAFFDSADWALGKQGG 98 (171)
Q Consensus 81 ~ERKYFDSADWALgKqG~ 98 (171)
.-||||--||.+.-=.|.
T Consensus 6 ~LrK~F~~GDhVkVi~G~ 23 (62)
T d2do3a1 6 ELRKYFKMGDHVKVIAGR 23 (62)
T ss_dssp CCCSSCCTTCEEEESSST
T ss_pred HheeccCCCCeEEEeccE
Confidence 349999999998766664
Done!