BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030767
MSCLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDK
SKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFA
KNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM

High Scoring Gene Products

Symbol, full name Information P value
CRR3
AT2G01590 		protein from Arabidopsis thaliana 6.6e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030767
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2049572 - symbol:CRR3 "AT2G01590" species:3702...   293  6.6e-26   1


>TAIR|locus:2049572 [details] [associations]
            symbol:CRR3 "AT2G01590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009773 "photosynthetic
            electron transport in photosystem I" evidence=TAS] [GO:0010598
            "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=NAS]
            [GO:0016020 "membrane" evidence=IDA] GO:GO:0009507 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC005560 GO:GO:0009773 GO:GO:0010598
            EMBL:AY035185 EMBL:AY113895 IPI:IPI00532026 PIR:F84426
            RefSeq:NP_565266.1 UniGene:At.24219 STRING:Q9ZVE7
            EnsemblPlants:AT2G01590.1 GeneID:814688 KEGG:ath:AT2G01590
            TAIR:At2g01590 eggNOG:NOG291590 HOGENOM:HOG000090884
            InParanoid:Q9ZVE7 OMA:TETRACE PhylomeDB:Q9ZVE7
            ProtClustDB:CLSN2687659 ArrayExpress:Q9ZVE7 Genevestigator:Q9ZVE7
            Uniprot:Q9ZVE7
        Length = 174

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 69/176 (39%), Positives = 100/176 (56%)

Query:     1 MSCLSCCHYITRASL-----IDNTTPSSSHQTSNSNXXXXXXXXXXXXXXXSQQQMPLPM 55
             M+ LS  + ITRAS      + N +PS    +S S                   +     
Sbjct:     1 MAVLSTIYSITRASTPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKLRQVSKQMGSQ 60

Query:    56 QKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRET 115
              +Q +  + S+ QIERA  +G++RD+E  ++D   + ++ +L   +  FE  +EK++RE 
Sbjct:    61 NQQRRGNKPSIAQIERAFGSGSYRDSEG-EMDMNTV-FDELLLGHANKFESKIEKKLREI 118

Query:   116 GEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
             GE F   +E +LRSS K +LM   +WILP+W +SLLVA GVIKLPFS+PFLDDLIM
Sbjct:   119 GEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDDLIM 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       156   0.00073  106 3  11 22  0.49    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:06
  No. of threads or processors used:  24
  Search cpu time:  17.68u 0.07s 17.75t   Elapsed:  00:00:18
  Total cpu time:  17.68u 0.07s 17.75t   Elapsed:  00:00:24
  Start:  Thu May  9 20:01:31 2013   End:  Thu May  9 20:01:55 2013

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