BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030767
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
 pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
          Length = 536

 Score = 28.9 bits (63), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 80  DAEPKDLDQEKITYNGILPDLSGMFEGPVEKQ--IRETGEWFAKNSEERLRSSR 131
           DA P+ L QE++     L +L G+ E  VE    +  T EW A   EER +S+R
Sbjct: 229 DAGPEALRQERLAR---LKEL-GLVEADVEAHPVLALTREWEALEDEERAKSAR 278


>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
           ( Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
           ( Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
          Length = 523

 Score = 28.5 bits (62), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 99  DLSGMFEGPVEKQIRETGEWFAKNS 123
           D +GM E    + +R  GEW+ +NS
Sbjct: 258 DWAGMTEAAFSRLLRNHGEWYERNS 282


>pdb|2JHE|A Chain A, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
           - 190)
 pdb|2JHE|B Chain B, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
           - 190)
 pdb|2JHE|C Chain C, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
           - 190)
 pdb|2JHE|D Chain D, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
           - 190)
          Length = 190

 Score = 26.9 bits (58), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 56  QKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNG 95
           QK D+ + H+  Q+    +   + ++EP+D   E +  NG
Sbjct: 115 QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVING 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,284,018
Number of Sequences: 62578
Number of extensions: 141696
Number of successful extensions: 272
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 6
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)