BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030767
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0AIP0|DAPF_NITEC Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91)
GN=dapF PE=1 SV=1
Length = 278
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 20 TPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPL-PMQKQDKSKQHSVMQI 69
TP+ + S VP+ +P +IP ++ Q+MP+ P+Q DK+ + S + I
Sbjct: 109 TPTIENNGEVSVNMGVPQFEPAEIPFQAAQRMPVYPLQIGDKTIEISAVSI 159
>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP28 PE=3 SV=1
Length = 721
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%)
Query: 49 QQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPV 108
QQ +K+ E T RD +P Q +++NG + G F+
Sbjct: 145 QQSNFSAKKKRMRTTEKKFNFEWDADEDTSRDNDPLYDRQTAVSHNGSFAGIGGEFDDGA 204
Query: 109 EKQIRETGEWFAKNSEERLRSSRKGILMVVFK 140
E++ R+ + A+ E + +GI+ F+
Sbjct: 205 EERARKRAKMIAQRDPENGKERAEGIMEDFFR 236
>sp|Q8UA91|PANB_AGRT5 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=panB PE=3 SV=1
Length = 279
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 74 SAGTFRDAEPKDLDQEKITYNGILPDLSGMF----EGPVEKQIRETGEWFA 120
+AG FR D + +KI +GI D +G F EG VE RE E A
Sbjct: 152 TAGGFRSLGHSDAETQKIWRDGIAVDQAGAFAIVVEGTVEPLARELTEKLA 202
>sp|B5BEN7|RECA_SALPK Protein RecA OS=Salmonella paratyphi A (strain AKU_12601) GN=recA
PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|Q5PF15|RECA_SALPA Protein RecA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=recA PE=3 SV=3
Length = 353
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|A3PFE5|CLPX_PROM0 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Prochlorococcus marinus (strain MIT 9301) GN=clpX
PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 3 CLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKS 47
C+ C+ I L+DN Q + +N P V K PT P+KS
Sbjct: 35 CIDLCNEILDEELLDN-------QANTNNSPQVKKKLPTDNPKKS 72
>sp|P65977|RECA_SALTY Protein RecA OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=recA PE=3 SV=2
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|P65978|RECA_SALTI Protein RecA OS=Salmonella typhi GN=recA PE=3 SV=2
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B4TT06|RECA_SALSV Protein RecA OS=Salmonella schwarzengrund (strain CVM19633) GN=recA
PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|C0PWM2|RECA_SALPC Protein RecA OS=Salmonella paratyphi C (strain RKS4594) GN=recA
PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|A9N0C5|RECA_SALPB Protein RecA OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=recA PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B4T3A0|RECA_SALNS Protein RecA OS=Salmonella newport (strain SL254) GN=recA PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B4TF13|RECA_SALHS Protein RecA OS=Salmonella heidelberg (strain SL476) GN=recA PE=3
SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B5RDF4|RECA_SALG2 Protein RecA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=recA PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B5QV78|RECA_SALEP Protein RecA OS=Salmonella enteritidis PT4 (strain P125109) GN=recA
PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B5FSY0|RECA_SALDC Protein RecA OS=Salmonella dublin (strain CT_02021853) GN=recA PE=3
SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|Q57KU4|RECA_SALCH Protein RecA OS=Salmonella choleraesuis (strain SC-B67) GN=recA
PE=3 SV=3
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|B5F352|RECA_SALA4 Protein RecA OS=Salmonella agona (strain SL483) GN=recA PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
>sp|A8ANQ3|RECA_CITK8 Protein RecA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC
4225-83 / SGSC4696) GN=recA PE=3 SV=1
Length = 354
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 78 FRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSE 124
F+ AE + L E I + G L DL G EK I + G W++ N E
Sbjct: 256 FKQAEFQILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYNGE 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,212,656
Number of Sequences: 539616
Number of extensions: 2515284
Number of successful extensions: 12818
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 12574
Number of HSP's gapped (non-prelim): 277
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)