Query 030767
Match_columns 171
No_of_seqs 15 out of 17
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07436 Curto_V3: Curtovirus 43.9 15 0.00031 28.1 1.5 14 143-156 4-17 (87)
2 PF14257 DUF4349: Domain of un 43.3 9.7 0.00021 31.6 0.5 22 136-157 237-258 (262)
3 PF01120 Alpha_L_fucos: Alpha- 33.9 20 0.00043 31.4 1.0 27 99-125 317-343 (346)
4 PLN02742 Probable galacturonos 32.5 26 0.00055 34.0 1.6 66 64-133 107-176 (534)
5 KOG0771 Prolactin regulatory e 31.6 26 0.00056 33.0 1.4 19 140-158 367-385 (398)
6 PLN02867 Probable galacturonos 31.5 22 0.00047 34.5 0.9 65 65-133 94-160 (535)
7 PF08611 DUF1774: Fungal prote 29.8 28 0.0006 27.0 1.1 21 136-156 47-67 (97)
8 PF01726 LexA_DNA_bind: LexA D 27.6 44 0.00096 23.2 1.7 17 61-77 23-39 (65)
9 PRK14762 membrane protein; Pro 26.1 50 0.0011 20.6 1.5 21 141-161 6-27 (27)
10 PF11740 KfrA_N: Plasmid repli 24.4 43 0.00093 24.3 1.2 23 59-81 15-37 (120)
11 PLN02769 Probable galacturonos 23.3 54 0.0012 32.5 2.0 63 65-132 216-281 (629)
12 TIGR02367 PylS pyrrolysyl-tRNA 21.5 2.9E+02 0.0062 26.6 6.3 62 50-116 177-253 (453)
13 COG1054 Predicted sulfurtransf 20.4 48 0.001 30.3 1.0 38 99-139 140-180 (308)
No 1
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=43.85 E-value=15 Score=28.15 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcc
Q 030767 143 LPMWTLSLLVASGV 156 (171)
Q Consensus 143 ~P~W~llllvAsGv 156 (171)
+|-|.++|||.+=+
T Consensus 4 lPDWlFLlFifsil 17 (87)
T PF07436_consen 4 LPDWLFLLFIFSIL 17 (87)
T ss_pred chhHHHHHHHHHHH
Confidence 68888888887633
No 2
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.35 E-value=9.7 Score=31.63 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=16.5
Q ss_pred eeehhHHHHHHHHHHHHHhcce
Q 030767 136 MVVFKWILPMWTLSLLVASGVI 157 (171)
Q Consensus 136 mf~~~wi~P~W~llllvAsGvI 157 (171)
+.++-|++|+|.++++++.++.
T Consensus 237 v~~l~~l~p~~~~~~~~~~~~~ 258 (262)
T PF14257_consen 237 VVFLVGLLPWLPLILIIGLLVR 258 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3446688999999888877664
No 3
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=33.85 E-value=20 Score=31.41 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=21.1
Q ss_pred CCCCCCCchHHHHHHHhhccccccchh
Q 030767 99 DLSGMFEGPVEKQIRETGEWFAKNSEE 125 (171)
Q Consensus 99 ~~ig~~Eg~vEKkLREtgEWvvd~TE~ 125 (171)
+.-|....+..++|||.|+|+-.+.|.
T Consensus 317 ~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 317 DPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp -TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 666777788899999999999998885
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=32.51 E-value=26 Score=34.04 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=42.9
Q ss_pred chHHHHHHHHhcCCccCCCC--CChhhhhhhhhcccC--CCCCCCCchHHHHHHHhhccccccchhhhhccCce
Q 030767 64 HSVMQIERAISAGTFRDAEP--KDLDQEKITYNGILP--DLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKG 133 (171)
Q Consensus 64 psv~qieRAiGags~rd~e~--~~~~~~~~t~mdLl~--~~ig~~Eg~vEKkLREtgEWvvd~TE~r~~s~~K~ 133 (171)
-.+-|+||++|-.+-+++.. +.-.++-++|..++. ....-==..+.+|||.+ ++.+|.+++...|+
T Consensus 107 ~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~klr~~----l~~~e~~~~~~~~q 176 (534)
T PLN02742 107 AQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHYDSATTIMTLKAH----IQALEERANAATVQ 176 (534)
T ss_pred HHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 35778999999988766652 444445555555555 22222235789999986 57788887755544
No 5
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.61 E-value=26 Score=32.95 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhccee
Q 030767 140 KWILPMWTLSLLVASGVIK 158 (171)
Q Consensus 140 ~wi~P~W~llllvAsGvIK 158 (171)
-|-+|+|+++||+.+.||-
T Consensus 367 ~~~~~~~~~lL~~l~~I~~ 385 (398)
T KOG0771|consen 367 RRKIPAWLALLFVLSYIIA 385 (398)
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 3789999999999998864
No 6
>PLN02867 Probable galacturonosyltransferase
Probab=31.49 E-value=22 Score=34.47 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=47.1
Q ss_pred hHHHHHHHHhcCCccCCCCCChhhhhhhhhcccC--CCCCCCCchHHHHHHHhhccccccchhhhhccCce
Q 030767 65 SVMQIERAISAGTFRDAEPKDLDQEKITYNGILP--DLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKG 133 (171)
Q Consensus 65 sv~qieRAiGags~rd~e~~~~~~~~~t~mdLl~--~~ig~~Eg~vEKkLREtgEWvvd~TE~r~~s~~K~ 133 (171)
-+.|++||+|-.+.-++.++..+++-.+|.+++. ...-.==..+-+|||.. ..++|.+.++..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am----~~~~e~~~~~~~~~ 160 (535)
T PLN02867 94 LREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAM----LLKMERKVQSARQR 160 (535)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4689999999988777777777788888988887 22221223567888886 56778887766654
No 7
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=29.76 E-value=28 Score=26.97 Aligned_cols=21 Identities=14% Similarity=0.528 Sum_probs=16.0
Q ss_pred eeehhHHHHHHHHHHHHHhcc
Q 030767 136 MVVFKWILPMWTLSLLVASGV 156 (171)
Q Consensus 136 mf~~~wi~P~W~llllvAsGv 156 (171)
++.+||||++-+..+|....+
T Consensus 47 vialQWIFAFvI~avlfv~sl 67 (97)
T PF08611_consen 47 VIALQWIFAFVIAAVLFVLSL 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999988877665543
No 8
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=27.63 E-value=44 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=11.9
Q ss_pred CCCchHHHHHHHHhcCC
Q 030767 61 SKQHSVMQIERAISAGT 77 (171)
Q Consensus 61 ~~qpsv~qieRAiGags 77 (171)
.-.||+.||.+++|..|
T Consensus 23 G~~Pt~rEIa~~~g~~S 39 (65)
T PF01726_consen 23 GYPPTVREIAEALGLKS 39 (65)
T ss_dssp SS---HHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHhCCCC
Confidence 44689999999999974
No 9
>PRK14762 membrane protein; Provisional
Probab=26.09 E-value=50 Score=20.58 Aligned_cols=21 Identities=38% Similarity=0.877 Sum_probs=15.1
Q ss_pred HHHH-HHHHHHHHHhcceeccC
Q 030767 141 WILP-MWTLSLLVASGVIKLPF 161 (171)
Q Consensus 141 wi~P-~W~llllvAsGvIKLPF 161 (171)
|+.- +.++-||+..||.||=|
T Consensus 6 w~i~iifligllvvtgvfklif 27 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGVFKMIF 27 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 5443 45567899999999865
No 10
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=24.38 E-value=43 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=18.5
Q ss_pred CCCCCchHHHHHHHHhcCCccCC
Q 030767 59 DKSKQHSVMQIERAISAGTFRDA 81 (171)
Q Consensus 59 ~~~~qpsv~qieRAiGags~rd~ 81 (171)
....+||+..|+..||-||+.+=
T Consensus 15 ~~G~~pT~~~Vr~~lG~GS~~ti 37 (120)
T PF11740_consen 15 AAGKKPTVRAVRERLGGGSMSTI 37 (120)
T ss_pred HcCCCCCHHHHHHHHCCCCHHHH
Confidence 34568999999999998887543
No 11
>PLN02769 Probable galacturonosyltransferase
Probab=23.27 E-value=54 Score=32.50 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCCccCCCCCChhhhhhhhhcccCCCCCCC---CchHHHHHHHhhccccccchhhhhccCc
Q 030767 65 SVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMF---EGPVEKQIRETGEWFAKNSEERLRSSRK 132 (171)
Q Consensus 65 sv~qieRAiGags~rd~e~~~~~~~~~t~mdLl~~~ig~~---Eg~vEKkLREtgEWvvd~TE~r~~s~~K 132 (171)
.+-|+||++|-.+..++-|+.-.++-..|..++. .+-.. =+.+.+|||.. .+.||.+++...|
T Consensus 216 ~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~-~ak~~~~dc~~~~~klr~~----l~~~E~~~~~~~k 281 (629)
T PLN02769 216 NIQEHERVLSESITDADLPPFIQKKLEKMEQTIA-RAKSCPVDCNNVDRKLRQI----LDMTEDEAHFHMK 281 (629)
T ss_pred HHHHHHHHHhhccccccCChhHHHHHHHHHHHHH-HHHhhccchHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4568999999887655555443333333333333 11111 25788999985 6788888874443
No 12
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=21.53 E-value=2.9e+02 Score=26.56 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=33.7
Q ss_pred CCCCCccccCCCCCchHHHHHHH-------------HhcCCccCCCCCChhhhhhhhhcccCCCCCC--CCchHHHHHHH
Q 030767 50 QMPLPMQKQDKSKQHSVMQIERA-------------ISAGTFRDAEPKDLDQEKITYNGILPDLSGM--FEGPVEKQIRE 114 (171)
Q Consensus 50 ~lp~~~~~q~~~~qpsv~qieRA-------------iGags~rd~e~~~~~~~~~t~mdLl~~~ig~--~Eg~vEKkLRE 114 (171)
.||.+ .|.+.+.-...|++|- +|.| |..=+++-+.+++.-+.++.. +|+ +-+.+++++|+
T Consensus 177 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-f~~~ep~lP~~~~~~~~~~~T--iG~~~~~~~Led~IRe 251 (453)
T TIGR02367 177 SMSAP--AQAPAPALTKSQLDRLEALLNPEDEISLNMAKP-FRELEPELLSRRKKDFQQIYA--EDREDYLGKLERDITK 251 (453)
T ss_pred cCCCc--ccCCccccCHHHHHHHHHhcCCchhhhhHHhcc-ccccCcccCcccccccccccc--cCcccHHHHHHHHHHH
Confidence 44443 3444555556666664 3444 333355555455555555443 444 56778888887
Q ss_pred hh
Q 030767 115 TG 116 (171)
Q Consensus 115 tg 116 (171)
+-
T Consensus 252 vf 253 (453)
T TIGR02367 252 FF 253 (453)
T ss_pred HH
Confidence 64
No 13
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=20.36 E-value=48 Score=30.26 Aligned_cols=38 Identities=32% Similarity=0.415 Sum_probs=30.5
Q ss_pred CCCCCCCchHH---HHHHHhhccccccchhhhhccCceeEeeeh
Q 030767 99 DLSGMFEGPVE---KQIRETGEWFAKNSEERLRSSRKGILMVVF 139 (171)
Q Consensus 99 ~~ig~~Eg~vE---KkLREtgEWvvd~TE~r~~s~~K~iLmf~~ 139 (171)
-.||-|||-++ ++.||-=+|+.++ +..-.+|.|.|||-
T Consensus 140 ~~iG~F~gAv~p~~~tFrefP~~v~~~---~~~~~~KkVvmyCT 180 (308)
T COG1054 140 VAIGHFEGAVEPDIETFREFPAWVEEN---LDLLKDKKVVMYCT 180 (308)
T ss_pred EeeeeecCccCCChhhhhhhHHHHHHH---HHhccCCcEEEEcC
Confidence 46899999876 7789999999874 45567789999993
Done!