Query 030767
Match_columns 171
No_of_seqs 15 out of 17
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvv_A Alpha-L-fucosidase; alp 25.1 27 0.00094 30.6 1.6 43 99-141 320-378 (450)
2 2zxd_A Alpha-L-fucosidase, put 21.6 33 0.0011 30.3 1.5 27 99-125 328-354 (455)
3 1skh_A Major prion protein 2; 18.4 51 0.0017 20.1 1.4 10 145-154 8-17 (30)
4 1mzw_B U4/U6 snRNP 60KDA prote 16.9 48 0.0016 19.9 1.0 19 107-125 1-19 (31)
5 1ogy_B Diheme cytochrome C NAP 12.3 69 0.0023 24.8 1.0 12 2-14 57-68 (130)
6 2dk4_A PRE-mRNA-splicing facto 11.7 89 0.003 22.2 1.4 24 101-124 25-48 (76)
7 3ueb_A Putative uncharacterize 10.5 94 0.0032 23.6 1.2 10 107-116 94-103 (110)
8 2kna_A Baculoviral IAP repeat- 9.9 49 0.0017 23.8 -0.5 17 105-121 45-61 (104)
9 2bmw_A Ferredoxin--NADP reduct 9.9 1.1E+02 0.0038 23.8 1.5 39 82-121 264-302 (304)
10 1jni_A NAPB;, diheme cytochrom 9.5 50 0.0017 25.3 -0.6 12 2-14 56-67 (123)
No 1
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=25.09 E-value=27 Score=30.64 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCCCCCCchHHHHHHHhhccccccchh---------------hhhc-cCceeEeeehhH
Q 030767 99 DLSGMFEGPVEKQIRETGEWFAKNSEE---------------RLRS-SRKGILMVVFKW 141 (171)
Q Consensus 99 ~~ig~~Eg~vEKkLREtgEWvvd~TE~---------------r~~s-~~K~iLmf~~~w 141 (171)
+.-|..--..+++|||+|+|+..|.|. ++.+ .++.+-++++.|
T Consensus 320 ~~dG~I~~~~~~~L~~iG~wl~~ngEaIYgt~~~~~~~~~~~~~T~~k~~~lYa~~~~~ 378 (450)
T 2wvv_A 320 QADGDFRPEEKAMATAIGKWMNRYGKAVYACDYAGFEKQDWGYYTRGKNDEVYMVVFNQ 378 (450)
T ss_dssp CTTSSCCHHHHHHHHHHHHHHHHHGGGTTTCBCCCCCCCTTEEEEECTTSCEEEEESSC
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhhhhheecccCccccCCCcEEEEccCCCEEEEEEccc
Confidence 556777778899999999999988774 3333 455566666665
No 2
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=21.57 E-value=33 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCCCCCCchHHHHHHHhhccccccchh
Q 030767 99 DLSGMFEGPVEKQIRETGEWFAKNSEE 125 (171)
Q Consensus 99 ~~ig~~Eg~vEKkLREtgEWvvd~TE~ 125 (171)
+.-|..-...+++|||+|+|+.-|.|.
T Consensus 328 ~~dG~I~~~~~~~L~eiG~wl~~ngEa 354 (455)
T 2zxd_A 328 KGDGTIPDLQKERLLGLGEWLRKYGDA 354 (455)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhccce
Confidence 566777778899999999999876664
No 3
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=18.42 E-value=51 Score=20.10 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 030767 145 MWTLSLLVAS 154 (171)
Q Consensus 145 ~W~llllvAs 154 (171)
-|++.||||.
T Consensus 8 cwilvLfva~ 17 (30)
T 1skh_A 8 SWILVLFVAM 17 (30)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4889999885
No 4
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=16.89 E-value=48 Score=19.91 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=13.4
Q ss_pred hHHHHHHHhhccccccchh
Q 030767 107 PVEKQIRETGEWFAKNSEE 125 (171)
Q Consensus 107 ~vEKkLREtgEWvvd~TE~ 125 (171)
+|-++||+.||=+.=-.|+
T Consensus 1 eV~~~LR~lgePi~lFGE~ 19 (31)
T 1mzw_B 1 EVKASLRALGEPITLFGEG 19 (31)
T ss_dssp CHHHHHHHTTCCSEETTCC
T ss_pred CHHHHHHHcCCCeeecCCC
Confidence 4678999999966544443
No 5
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=12.32 E-value=69 Score=24.83 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.6
Q ss_pred ccccccccccccc
Q 030767 2 SCLSCCHYITRAS 14 (171)
Q Consensus 2 ~cLs~~~~i~k~~ 14 (171)
.||+| |+-.++-
T Consensus 57 ~ClsC-H~~~~a~ 68 (130)
T 1ogy_B 57 RCLEC-HRRQYSG 68 (130)
T ss_dssp GGGGT-SCCCCTT
T ss_pred cCccc-CCccccc
Confidence 59999 9887764
No 6
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=11.71 E-value=89 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=17.6
Q ss_pred CCCCCchHHHHHHHhhccccccch
Q 030767 101 SGMFEGPVEKQIRETGEWFAKNSE 124 (171)
Q Consensus 101 ig~~Eg~vEKkLREtgEWvvd~TE 124 (171)
+.-+..+|-+|||+.||=+.=-.|
T Consensus 25 v~~~d~eV~~~LR~lgEPi~LFGE 48 (76)
T 2dk4_A 25 MTLSRQEVIRRLRERGEPIRLFGE 48 (76)
T ss_dssp CCSCHHHHHHHHHHHTCCSSCTTC
T ss_pred CCCCHHHHHHHHHHcCCCeeecCC
Confidence 344788999999999986554444
No 7
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=10.46 E-value=94 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.8
Q ss_pred hHHHHHHHhh
Q 030767 107 PVEKQIRETG 116 (171)
Q Consensus 107 ~vEKkLREtg 116 (171)
.||+||||++
T Consensus 94 ~VE~~Lreia 103 (110)
T 3ueb_A 94 IVERKLREIA 103 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5899999987
No 8
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=9.94 E-value=49 Score=23.85 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=14.5
Q ss_pred CchHHHHHHHhhccccc
Q 030767 105 EGPVEKQIRETGEWFAK 121 (171)
Q Consensus 105 Eg~vEKkLREtgEWvvd 121 (171)
+..+++||+++|.||..
T Consensus 45 ~~~v~~ki~~sG~~y~T 61 (104)
T 2kna_A 45 KKIMEEKIQISGSNYKS 61 (104)
T ss_dssp HHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHhCCCcCC
Confidence 56789999999999954
No 9
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=9.93 E-value=1.1e+02 Score=23.81 Aligned_cols=39 Identities=13% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCCChhhhhhhhhcccCCCCCCCCchHHHHHHHhhccccc
Q 030767 82 EPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAK 121 (171)
Q Consensus 82 e~~~~~~~~~t~mdLl~~~ig~~Eg~vEKkLREtgEWvvd 121 (171)
.+.++++.+.++.+++.. .|.+....+++|++.|.|.+|
T Consensus 264 p~~m~~~v~~~l~~~~~~-~g~~~~~~~~~m~~~~ry~~e 302 (304)
T 2bmw_A 264 PPPMEEGIDAALSAAAAK-EGVTWSDYQKDLKKAGRWHVE 302 (304)
T ss_dssp CTTHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHcCCeEEe
Confidence 445555566666666553 355667788889988888876
No 10
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=9.54 E-value=50 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.0
Q ss_pred ccccccccccccc
Q 030767 2 SCLSCCHYITRAS 14 (171)
Q Consensus 2 ~cLs~~~~i~k~~ 14 (171)
+|||| |+-.++-
T Consensus 56 ~ClsC-H~~~~a~ 67 (123)
T 1jni_A 56 QCLNC-HSPENSR 67 (123)
T ss_dssp TTHHH-HSTTTHH
T ss_pred cCccc-CCccchh
Confidence 69999 9866643
Done!