Query 030768
Match_columns 171
No_of_seqs 190 out of 631
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 59.1 30 0.001 24.4 6.4 63 90-158 5-72 (107)
2 1oey_J P40-PHOX, neutrophil cy 56.9 28 0.00094 26.0 5.9 66 104-170 20-93 (107)
3 1und_A Advillin, P92; actin bi 49.7 3.5 0.00012 25.3 0.0 19 112-130 1-19 (37)
4 2al3_A TUG long isoform; TUG U 49.1 17 0.00058 26.2 3.6 41 90-135 8-48 (90)
5 2vkp_A BTB/POZ domain-containi 40.9 48 0.0016 22.2 4.8 60 94-158 12-74 (109)
6 1vd2_A Protein kinase C, IOTA 39.3 33 0.0011 24.4 3.8 30 103-136 16-45 (89)
7 1s1g_A Potassium voltage-gated 36.6 31 0.0011 25.5 3.5 64 88-158 10-75 (124)
8 2xko_C PIPX, global nitrogen r 34.6 6.5 0.00022 28.6 -0.5 13 112-124 5-17 (89)
9 2bkf_A Zinc-finger protein NBR 34.0 1.1E+02 0.0038 21.8 5.9 51 103-156 16-75 (87)
10 2vpk_A Myoneurin; transcriptio 31.0 65 0.0022 22.0 4.3 47 105-158 32-83 (116)
11 2nz0_B Potassium voltage-gated 30.9 39 0.0013 25.5 3.3 64 88-158 32-97 (140)
12 3ga1_A Nucleus accumbens-assoc 29.7 77 0.0026 22.2 4.5 46 105-157 43-92 (129)
13 1r29_A B-cell lymphoma 6 prote 28.6 66 0.0023 22.3 4.0 50 105-158 39-92 (127)
14 1wj6_A KIAA0049 protein, RSGI 27.4 1.3E+02 0.0044 22.1 5.4 56 94-156 19-83 (101)
15 1y74_B MLIN-2/CASK, peripheral 27.1 25 0.00084 21.9 1.3 20 112-131 26-49 (50)
16 1yu8_X Villin; alpha helix, 3- 26.8 14 0.00047 25.3 0.1 20 112-131 31-50 (67)
17 1ujs_A Actin-binding LIM prote 26.6 17 0.00057 26.2 0.5 20 112-131 46-65 (88)
18 1qzp_A Dematin; villin headpie 24.3 12 0.00041 25.6 -0.6 20 112-131 32-51 (68)
19 3n5b_B ASR0485 protein; PII, P 24.1 13 0.00044 28.0 -0.5 13 113-125 29-41 (112)
20 1nn7_A Potassium channel KV4.2 22.1 35 0.0012 24.3 1.5 59 93-158 2-62 (105)
21 2k6m_S Supervillin; SVHP, HP, 21.9 15 0.00053 25.0 -0.5 20 112-131 31-50 (67)
22 2ccq_A P97, peptide N-glycanas 21.3 66 0.0023 23.0 2.8 44 113-156 45-97 (99)
23 3drx_A BTB/POZ domain-containi 21.0 1.1E+02 0.0038 24.7 4.4 64 89-158 10-78 (202)
24 2if5_A Zinc finger and BTB dom 20.0 1.8E+02 0.0062 19.7 4.9 51 105-158 35-88 (120)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=59.06 E-value=30 Score=24.43 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCeEEEEEcccCCcceEEEEEeeccC-Ch--hHHHHHHHHHHhcC--ccCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 90 KGHLAVYVGQKDGDFHRVLVPVIYFN-HP--LFGKLLRDAEEEYG--FNQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 90 kG~~aVYVG~~~~d~rRFvVP~~yLn-hP--lF~eLL~~aeEEfG--f~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
...+.+-||. .+|.+..+-|. +| .|..|+... .++. .+.+|.+-|-.|...|++||.-+..+.
T Consensus 5 ~~~v~LNVGG-----~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVGG-----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEETT-----EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEECC-----EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 4567888874 89999988775 34 566664321 1232 335689999999999999999999875
No 2
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=56.91 E-value=28 Score=26.04 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=43.3
Q ss_pred ceEEEEEeeccCChhHHHHHHHHHHhcCcc--------CCCceEecCcHHHHHHHHHHHHcCCCCCccccccccc
Q 030768 104 FHRVLVPVIYFNHPLFGKLLRDAEEEYGFN--------QQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRN 170 (171)
Q Consensus 104 ~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~--------~~G~LtIPCd~~~Fe~vl~~i~~~~~~~~~~~~~~~~ 170 (171)
-+=..|--+.-..|.|.+||.+-..+|.=+ .+|-|.=-=+-+..+-++... ++.++..+-|+|+.|
T Consensus 20 irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGDLIrilddeDv~lmi~~s-r~~~s~k~~FPWeLh 93 (107)
T 1oey_J 20 IKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQA-RGLPSQKRLFPWKLH 93 (107)
T ss_dssp EEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSCEEECCSHHHHHHHHHHC-CCCCCTTCBCSSCEE
T ss_pred eeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCCEEEEcchHHHHHHHHHh-hcCcccccccceeEE
Confidence 445566667889999999999999998722 245544333444444333332 556666678999876
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=49.75 E-value=3.5 Score=25.30 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=17.2
Q ss_pred eccCChhHHHHHHHHHHhc
Q 030768 112 IYFNHPLFGKLLRDAEEEY 130 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEf 130 (171)
.||+...|++++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=49.10 E-value=17 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCeEEEEEcccCCcceEEEEEeeccCChhHHHHHHHHHHhcCccCC
Q 030768 90 KGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQ 135 (171)
Q Consensus 90 kG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~~ 135 (171)
.|-.++++.. +.+|+.|++ --.-.+.++|++|-+.|||+.+
T Consensus 8 ~~m~v~Vl~~---n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 8 GGSAVSVLAP---NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp --CCEEEECT---TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGG
T ss_pred CccEEEEEcC---CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChh
Confidence 3444445543 579999998 4555788999999999999753
No 5
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=40.91 E-value=48 Score=22.22 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred EEEEcccCCcceEEEEEeecc--CChhHHHHHHHHHHhcCccCCCceEec-CcHHHHHHHHHHHHcCC
Q 030768 94 AVYVGQKDGDFHRVLVPVIYF--NHPLFGKLLRDAEEEYGFNQQGGITIP-CRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 94 aVYVG~~~~d~rRFvVP~~yL--nhPlF~eLL~~aeEEfGf~~~G~LtIP-Cd~~~Fe~vl~~i~~~~ 158 (171)
.+.||. +++.+.|-+.-..| ..|.|+.++...-.|- . ..|.|| .+...|+.++.-+=.+.
T Consensus 12 ~l~v~~-~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 12 HFVVGP-PGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEESS-TTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEECC-CCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 344553 12457888888887 5899999997543332 2 678897 68999999998887654
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.30 E-value=33 Score=24.42 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.3
Q ss_pred cceEEEEEeeccCChhHHHHHHHHHHhcCccCCC
Q 030768 103 DFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQG 136 (171)
Q Consensus 103 d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~~G 136 (171)
|-.++-||. ...|++|.++-.+-|++..+.
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCSSC
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCCCC
Confidence 778888876 579999999999999985433
No 7
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=36.56 E-value=31 Score=25.48 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCCCeEEEEEcccCCcceEEEEEeeccC-ChhHHHHHHHHHHhcCc-cCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 88 VPKGHLAVYVGQKDGDFHRVLVPVIYFN-HPLFGKLLRDAEEEYGF-NQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 88 vpkG~~aVYVG~~~~d~rRFvVP~~yLn-hPlF~eLL~~aeEEfGf-~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
.....+.+-||. .+|.+..+-|. +|- .+|..++...-+ +.+|.+-|..|...|++||.-+..+.
T Consensus 10 ~~~~~V~LNVGG-----~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 10 RQDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp --CCEEEEEETT-----EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEEeCC-----EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 356778888974 99999988764 332 133334433323 34699999999999999999999875
No 8
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=34.60 E-value=6.5 Score=28.59 Aligned_cols=13 Identities=54% Similarity=1.027 Sum_probs=10.2
Q ss_pred eccCChhHHHHHH
Q 030768 112 IYFNHPLFGKLLR 124 (171)
Q Consensus 112 ~yLnhPlF~eLL~ 124 (171)
.|||||.|.-|..
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 4999999976643
No 9
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=34.03 E-value=1.1e+02 Score=21.81 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=37.5
Q ss_pred cceEEEEEeeccCChhHHHHHHHHHHhcCcc--------CC-CceEecCcHHHHHHHHHHHHc
Q 030768 103 DFHRVLVPVIYFNHPLFGKLLRDAEEEYGFN--------QQ-GGITIPCRFSEFEQVQTRIAA 156 (171)
Q Consensus 103 d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~--------~~-G~LtIPCd~~~Fe~vl~~i~~ 156 (171)
+.+||.| +++.+|.|.+|-.+...-||+. .+ ..|+|.=+++..| ++.....
T Consensus 16 e~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eE-Alkva~k 75 (87)
T 2bkf_A 16 EIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEE-ALKMAVK 75 (87)
T ss_dssp EEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHH-HHHHHHH
T ss_pred CeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHH-HHHHhcc
Confidence 5788865 5999999999999999999954 23 5688887665554 5554443
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=31.04 E-value=65 Score=21.97 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=35.6
Q ss_pred eEEEEEeecc--CChhHHHHHHHHHHhcCccCCCceEec---CcHHHHHHHHHHHHcCC
Q 030768 105 HRVLVPVIYF--NHPLFGKLLRDAEEEYGFNQQGGITIP---CRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 105 rRFvVP~~yL--nhPlF~eLL~~aeEEfGf~~~G~LtIP---Cd~~~Fe~vl~~i~~~~ 158 (171)
+.|-+.-..| ..|.|++++... .+..|+|+ .+...|+.++.-+=.+.
T Consensus 32 ~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 32 FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 5676666666 578999988654 35678887 78999999998887654
No 11
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=30.86 E-value=39 Score=25.52 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=46.5
Q ss_pred CCCCeEEEEEcccCCcceEEEEEeeccC-ChhHHHHHHHHHHhcCc-cCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 88 VPKGHLAVYVGQKDGDFHRVLVPVIYFN-HPLFGKLLRDAEEEYGF-NQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 88 vpkG~~aVYVG~~~~d~rRFvVP~~yLn-hPlF~eLL~~aeEEfGf-~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
.....+.+-||. .+|.+..+-|. +|- .+|..++...-+ +.+|.+-|-.|...|++||.-+..+.
T Consensus 32 ~~~~~V~LNVGG-----~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 32 RQDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp TCCCEEEEEETT-----EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEECC-----EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 456788889984 99999987763 332 133334433333 35699999999999999999999875
No 12
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=29.65 E-value=77 Score=22.15 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=35.0
Q ss_pred eEEEEEeeccC--ChhHHHHHHHHHHhcCccCCCceEec--CcHHHHHHHHHHHHcC
Q 030768 105 HRVLVPVIYFN--HPLFGKLLRDAEEEYGFNQQGGITIP--CRFSEFEQVQTRIAAG 157 (171)
Q Consensus 105 rRFvVP~~yLn--hPlF~eLL~~aeEEfGf~~~G~LtIP--Cd~~~Fe~vl~~i~~~ 157 (171)
+.|-+.-..|. .|.|++++... ....|.|| .+.+.|+.++.-+=.+
T Consensus 43 ~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 43 HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 56666655554 68999988765 45789996 8899999999887654
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=28.55 E-value=66 Score=22.31 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=38.0
Q ss_pred eEEEEEeecc--CChhHHHHHHHHHHhcCccCCCceEe-c-CcHHHHHHHHHHHHcCC
Q 030768 105 HRVLVPVIYF--NHPLFGKLLRDAEEEYGFNQQGGITI-P-CRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 105 rRFvVP~~yL--nhPlF~eLL~~aeEEfGf~~~G~LtI-P-Cd~~~Fe~vl~~i~~~~ 158 (171)
+.|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.++.-+=.+.
T Consensus 39 ~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 39 EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 5666666666 689999999765444 4578999 4 78899999998887654
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.37 E-value=1.3e+02 Score=22.13 Aligned_cols=56 Identities=7% Similarity=0.105 Sum_probs=39.9
Q ss_pred EEEEcccCCcceEEEEEeeccCChhHHHHHHHHHHhcCcc--------CC-CceEecCcHHHHHHHHHHHHc
Q 030768 94 AVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFN--------QQ-GGITIPCRFSEFEQVQTRIAA 156 (171)
Q Consensus 94 aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~--------~~-G~LtIPCd~~~Fe~vl~~i~~ 156 (171)
+.|.| +.+||.| +++.++.|.+|-.+...-||+. .| ..|+|.=+.+.. .++.....
T Consensus 19 V~f~g----e~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~e-EAlkva~k 83 (101)
T 1wj6_A 19 VTFKN----EIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYE-EALKMAVK 83 (101)
T ss_dssp EEETT----EEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHH-HHHHHHHH
T ss_pred EEEcC----CeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHH-HHHHHhcc
Confidence 34555 6788865 5999999999999999999954 23 567777765554 45555443
No 15
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=27.08 E-value=25 Score=21.90 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=15.1
Q ss_pred eccCChhHHHHHHH----HHHhcC
Q 030768 112 IYFNHPLFGKLLRD----AEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~----aeEEfG 131 (171)
..|+.|-|+.||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 47899999999974 556664
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=26.84 E-value=14 Score=25.32 Aligned_cols=20 Identities=5% Similarity=0.100 Sum_probs=18.3
Q ss_pred eccCChhHHHHHHHHHHhcC
Q 030768 112 IYFNHPLFGKLLRDAEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEfG 131 (171)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999973
No 17
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=26.61 E-value=17 Score=26.18 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=18.5
Q ss_pred eccCChhHHHHHHHHHHhcC
Q 030768 112 IYFNHPLFGKLLRDAEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEfG 131 (171)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999984
No 18
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=24.33 E-value=12 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.2
Q ss_pred eccCChhHHHHHHHHHHhcC
Q 030768 112 IYFNHPLFGKLLRDAEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEfG 131 (171)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999973
No 19
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=24.09 E-value=13 Score=28.02 Aligned_cols=13 Identities=54% Similarity=0.971 Sum_probs=10.3
Q ss_pred ccCChhHHHHHHH
Q 030768 113 YFNHPLFGKLLRD 125 (171)
Q Consensus 113 yLnhPlF~eLL~~ 125 (171)
|||||.|.-|...
T Consensus 29 YLNHPTFGLLyrV 41 (112)
T 3n5b_B 29 YINHPTWGLLYRI 41 (112)
T ss_dssp EEEETTTEEEEEE
T ss_pred hccCCccchheee
Confidence 9999999866543
No 20
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=22.07 E-value=35 Score=24.28 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=39.7
Q ss_pred EEEEEcccCCcceEEEEEeecc-CChhHHHHHHHHHHhcCc-cCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 93 LAVYVGQKDGDFHRVLVPVIYF-NHPLFGKLLRDAEEEYGF-NQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 93 ~aVYVG~~~~d~rRFvVP~~yL-nhPlF~eLL~~aeEEfGf-~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
+.+-||. .+|.+..+-| ++|- .+|..++...-+ +.+|.+-|..|...|++||.-+..+.
T Consensus 2 V~LNVGG-----~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~ 62 (105)
T 1nn7_A 2 IVLNVSG-----TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT-----EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC-----EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCC
Confidence 4556763 8899887765 3332 122223333223 34699999999999999999999875
No 21
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=21.94 E-value=15 Score=25.01 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.4
Q ss_pred eccCChhHHHHHHHHHHhcC
Q 030768 112 IYFNHPLFGKLLRDAEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEfG 131 (171)
.||+...|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999984
No 22
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=21.26 E-value=66 Score=22.96 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=29.1
Q ss_pred ccCChhHHHHHHHHH------HhcCccC-CCceEec--CcHHHHHHHHHHHHc
Q 030768 113 YFNHPLFGKLLRDAE------EEYGFNQ-QGGITIP--CRFSEFEQVQTRIAA 156 (171)
Q Consensus 113 yLnhPlF~eLL~~ae------EEfGf~~-~G~LtIP--Cd~~~Fe~vl~~i~~ 156 (171)
-++||.|++-+...+ +..||.. ++.+++| .+....+++...|..
T Consensus 45 r~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 45 RIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp ETTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 356777777553322 3578964 4679998 677777777777654
No 23
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=21.00 E-value=1.1e+02 Score=24.72 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=46.9
Q ss_pred CCCeEEEEEcccCCcceEEEEEeeccCC-h--hHHHHHHHHHHhcC--ccCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 89 PKGHLAVYVGQKDGDFHRVLVPVIYFNH-P--LFGKLLRDAEEEYG--FNQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 89 pkG~~aVYVG~~~~d~rRFvVP~~yLnh-P--lF~eLL~~aeEEfG--f~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
....+.+-||. .+|.+..+-|.. | .|..|+... .++. .+.+|.+-|..|...|++||.-+..+.
T Consensus 10 ~~~~V~LNVGG-----~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 10 VSKWVRLNVGG-----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCCEEEEEETT-----EEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCCEEEEEECC-----EEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 45678889974 899999888753 4 566664321 1232 345689999999999999999999875
No 24
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=20.04 E-value=1.8e+02 Score=19.66 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=35.6
Q ss_pred eEEEEEeecc--CChhHHHHHHHHHHhcCccCCCceEec-CcHHHHHHHHHHHHcCC
Q 030768 105 HRVLVPVIYF--NHPLFGKLLRDAEEEYGFNQQGGITIP-CRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 105 rRFvVP~~yL--nhPlF~eLL~~aeEEfGf~~~G~LtIP-Cd~~~Fe~vl~~i~~~~ 158 (171)
+.|-+.-..| ..|.|++++...-.| .....|.|| .+...|+.++.-+=.+.
T Consensus 35 ~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 35 REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 6676666666 479999999754333 234678898 68999999998877654
Done!