Query 030768
Match_columns 171
No_of_seqs 190 out of 631
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030768.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030768hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oeyj_ d.15.2.2 (J:) Neutroph 64.6 8.8 0.00064 26.9 6.2 67 103-170 17-91 (105)
2 d2bkfa1 d.15.2.2 (A:1-85) Next 56.9 19 0.0014 23.9 6.7 47 103-151 14-69 (85)
3 d1nn7a_ d.42.1.2 (A:) Potassiu 51.4 2.4 0.00018 28.8 1.2 59 93-158 2-62 (105)
4 d1unda_ a.14.1.1 (A:) Advillin 49.9 1.6 0.00012 25.3 0.0 18 113-130 1-18 (36)
5 d1y6ia2 a.261.1.1 (A:83-233) M 42.1 0.63 4.6E-05 34.8 -3.5 31 86-121 118-148 (151)
6 d1z3xa2 a.261.1.1 (A:88-235) G 40.2 0.65 4.7E-05 34.5 -3.6 30 86-120 118-147 (148)
7 d1t1da_ d.42.1.2 (A:) Shaker p 38.3 12 0.00088 24.9 3.2 58 93-157 3-63 (100)
8 d3kvta_ d.42.1.2 (A:) akv3.1 v 34.6 6.5 0.00047 26.4 1.2 59 92-158 3-65 (103)
9 d1zj8a1 d.58.36.1 (A:327-406) 28.8 39 0.0028 20.9 4.4 68 89-157 2-75 (80)
10 d1yu5x1 a.14.1.1 (X:10-76) Vil 28.0 6 0.00044 25.6 0.1 19 112-130 31-49 (67)
11 d1ujsa_ a.14.1.1 (A:) Actin-bi 25.1 8.7 0.00064 26.0 0.5 20 112-131 46-65 (88)
12 d1tjya_ c.93.1.1 (A:) AI-2 rec 23.1 33 0.0024 24.3 3.5 30 104-133 3-35 (316)
13 d3buxb3 d.93.1.1 (B:264-351) C 22.3 32 0.0023 23.0 3.0 43 89-136 36-79 (88)
14 d1qzpa_ a.14.1.1 (A:) Dematin 21.8 6.8 0.0005 25.4 -0.6 19 112-130 32-50 (68)
15 d1yu8x1 a.14.1.1 (X:42-76) Vil 20.9 9.5 0.00069 21.7 -0.0 17 114-130 1-17 (35)
16 d2al3a1 d.15.1.2 (A:10-85) Tet 20.1 52 0.0038 21.3 3.6 31 103-135 9-39 (76)
No 1
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.56 E-value=8.8 Score=26.86 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=45.1
Q ss_pred cceEEEEEeeccCChhHHHHHHHHHHhcCcc--------CCCceEecCcHHHHHHHHHHHHcCCCCCccccccccc
Q 030768 103 DFHRVLVPVIYFNHPLFGKLLRDAEEEYGFN--------QQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRN 170 (171)
Q Consensus 103 d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~--------~~G~LtIPCd~~~Fe~vl~~i~~~~~~~~~~~~~~~~ 170 (171)
+.+=..|--++-..|+|.+||..-..+|+-. .+|-|.=-=+-+..+=++.. +++.++..+-|+|+.|
T Consensus 17 ~~rDI~veedl~~~P~ykdLl~lmr~~f~~~dIaLNYrD~eGDLIRllddeDv~LMv~~-~~~~~s~~~~fPWeLh 91 (105)
T d1oeyj_ 17 TIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQ-ARGLPSQKRLFPWKLH 91 (105)
T ss_dssp EEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSCEEECCSHHHHHHHHHH-CCCCCCTTCBCSSCEE
T ss_pred eeeeEEEccccccCccHHHHHHHHHHHhccceeEeeeecCCCCEEEEcchhhHHHHHHH-hccCcccceecceeEE
Confidence 3455667778999999999999999998732 34554433344444433433 5556666678999875
No 2
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.90 E-value=19 Score=23.90 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=35.8
Q ss_pred cceEEEEEeeccCChhHHHHHHHHHHhcCcc--------C-CCceEecCcHHHHHHHH
Q 030768 103 DFHRVLVPVIYFNHPLFGKLLRDAEEEYGFN--------Q-QGGITIPCRFSEFEQVQ 151 (171)
Q Consensus 103 d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~--------~-~G~LtIPCd~~~Fe~vl 151 (171)
|..||.|+.. +++.|.+|..+-+.-|+.+ . +--++|.|++++=|.+-
T Consensus 14 dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~~ 69 (85)
T d2bkfa1 14 EIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 69 (85)
T ss_dssp EEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred ceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHHH
Confidence 8999998533 5788999999999888842 2 24589999988766543
No 3
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=51.44 E-value=2.4 Score=28.82 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=41.6
Q ss_pred EEEEEcccCCcceEEEEEeecc-CChhHHHHHHHHH-HhcCccCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 93 LAVYVGQKDGDFHRVLVPVIYF-NHPLFGKLLRDAE-EEYGFNQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 93 ~aVYVG~~~~d~rRFvVP~~yL-nhPlF~eLL~~ae-EEfGf~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
+.+-||. .+|.+..+-| ++|.. +|.... ..+--+.+|.+-|--|...|++||..+..|.
T Consensus 2 I~LNVGG-----~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVSG-----TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT-----EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC-----EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 4567874 9999998877 45532 112222 2232245689999999999999999999875
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.88 E-value=1.6 Score=25.28 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=16.8
Q ss_pred ccCChhHHHHHHHHHHhc
Q 030768 113 YFNHPLFGKLLRDAEEEY 130 (171)
Q Consensus 113 yLnhPlF~eLL~~aeEEf 130 (171)
||+...|++++.|+.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999997
No 5
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=42.11 E-value=0.63 Score=34.76 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=19.7
Q ss_pred CCCCCCeEEEEEcccCCcceEEEEEeeccCChhHHH
Q 030768 86 VSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGK 121 (171)
Q Consensus 86 ~~vpkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~e 121 (171)
..+|+||+|+.-.-- +- -|--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lr-G~----~~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLR-GV----RVAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTT-CT----HHHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhh-hH----HHHHHHHcCcchhh
Confidence 468999999854211 11 13334889999865
No 6
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=40.24 E-value=0.65 Score=34.53 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred CCCCCCeEEEEEcccCCcceEEEEEeeccCChhHH
Q 030768 86 VSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFG 120 (171)
Q Consensus 86 ~~vpkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~ 120 (171)
..+|+||+|+.-. .+-+-|=-..|+||.|.
T Consensus 118 l~AP~GHLP~~~~-----lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 118 LSAPRGHLPLTNQ-----LRGVQVLNALLNHPAWT 147 (148)
T ss_dssp TTSCTTCCSCCCC-----TTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCCc-----cchHHHHHHHhcCcccc
Confidence 3689999998541 22233334578888763
No 7
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=38.35 E-value=12 Score=24.93 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=41.1
Q ss_pred EEEEEcccCCcceEEEEEeeccCC-h--hHHHHHHHHHHhcCccCCCceEecCcHHHHHHHHHHHHcC
Q 030768 93 LAVYVGQKDGDFHRVLVPVIYFNH-P--LFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAG 157 (171)
Q Consensus 93 ~aVYVG~~~~d~rRFvVP~~yLnh-P--lF~eLL~~aeEEfGf~~~G~LtIPCd~~~Fe~vl~~i~~~ 157 (171)
+.+-||. .+|.++.+-|.. | .+..|..... .+ -+.+|.+-|--|...|++||.-+.++
T Consensus 3 I~LNVGG-----~~f~t~~~tL~~~p~s~l~~l~~~~~-~~-~~~~g~~FiDRdp~~F~~IL~flR~~ 63 (100)
T d1t1da_ 3 VVINVSG-----LRFETQLKTLNQFPDTLLGNPQKRNR-YY-DPLRNEYFFDRNRPSFDAILYFYQSG 63 (100)
T ss_dssp EEEEETT-----EEEEEEHHHHHTSTTSTTTCHHHHGG-GE-ETTTTEEEECSCSTTHHHHHHHHHTT
T ss_pred EEEEECC-----EEEEEeHHHHhhCCCchhHHHHhCCC-cC-CCCCCeEEEecCHHHHHHHHHHHhcC
Confidence 4567874 899999877754 4 4444443221 11 24569999999999999999999874
No 8
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=34.57 E-value=6.5 Score=26.37 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=42.2
Q ss_pred eEEEEEcccCCcceEEEEEeeccCC-h--hHHHHHHHHHHhcCc-cCCCceEecCcHHHHHHHHHHHHcCC
Q 030768 92 HLAVYVGQKDGDFHRVLVPVIYFNH-P--LFGKLLRDAEEEYGF-NQQGGITIPCRFSEFEQVQTRIAAGN 158 (171)
Q Consensus 92 ~~aVYVG~~~~d~rRFvVP~~yLnh-P--lF~eLL~~aeEEfGf-~~~G~LtIPCd~~~Fe~vl~~i~~~~ 158 (171)
.+.+=||. ++|.+..+-|.. | .|..++ +....+ +.+|.+-|--|...|++||..+..+.
T Consensus 3 rI~LNVGG-----~~F~t~~~tL~~~~~s~l~~~~---~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 3 RVIINVGG-----IRHETYKATLKKIPATRLSRLT---EGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp EEEEEETT-----EEEEEEHHHHTTSCSSTTTTCC---TTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEECC-----EEEEEeHHHHhhCccchhHHHH---cCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 45666773 999999987763 4 333332 222233 34689999999999999999999874
No 9
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.79 E-value=39 Score=20.89 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=42.9
Q ss_pred CCCeEEEEEcccCCcceEEEEEeeccCChhHHHHHHHHHHhcCc-----cCCCceEec-CcHHHHHHHHHHHHcC
Q 030768 89 PKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGF-----NQQGGITIP-CRFSEFEQVQTRIAAG 157 (171)
Q Consensus 89 pkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf-----~~~G~LtIP-Cd~~~Fe~vl~~i~~~ 157 (171)
|..|+=||--+++.-.-|..||.-.++.+.+..|.+.|+ +||- +....|.|+ =+.+..+.++..+++-
T Consensus 2 ~~dh~Gv~~q~dG~~~vri~~p~G~it~~ql~~la~ia~-~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~~~ 75 (80)
T d1zj8a1 2 PIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMA-RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDAL 75 (80)
T ss_dssp CCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHH-HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHT
T ss_pred CCCcceEeeecCCcEEEEEeccCcEECHHHHHHHHHHHH-HhCCCeEEECCCCcEEEcCCCHHHHHHHHHHHHHc
Confidence 344555555432212345557777888888888888665 6763 344567777 5677888888877653
No 10
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.98 E-value=6 Score=25.57 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=17.8
Q ss_pred eccCChhHHHHHHHHHHhc
Q 030768 112 IYFNHPLFGKLLRDAEEEY 130 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEf 130 (171)
.||+.-.|++++.|+.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 4999999999999999997
No 11
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.09 E-value=8.7 Score=26.05 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=18.3
Q ss_pred eccCChhHHHHHHHHHHhcC
Q 030768 112 IYFNHPLFGKLLRDAEEEYG 131 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEfG 131 (171)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999984
No 12
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=23.14 E-value=33 Score=24.30 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=22.2
Q ss_pred ceEEEEEeeccCChhHHHHHHHHH---HhcCcc
Q 030768 104 FHRVLVPVIYFNHPLFGKLLRDAE---EEYGFN 133 (171)
Q Consensus 104 ~rRFvVP~~yLnhPlF~eLL~~ae---EEfGf~ 133 (171)
.++..|=+..++||.|.++.+-++ +|+|++
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 466666677899999999976554 577764
No 13
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=32 Score=22.96 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=30.1
Q ss_pred CCCeEEE-EEcccCCcceEEEEEeeccCChhHHHHHHHHHHhcCccCCC
Q 030768 89 PKGHLAV-YVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQG 136 (171)
Q Consensus 89 pkG~~aV-YVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~~G 136 (171)
.-|.-|+ ||.. ..=++-+.-.|.|++|+|++-..|-|=.-.||
T Consensus 36 rlGQWAIGyvt~-----dg~IlQTIp~nk~L~qaLidG~reGfylyPdG 79 (88)
T d3buxb3 36 RLGQWAIGYVTA-----DGNILQTIPHNKPLFQALIDGFREGFYLFPDG 79 (88)
T ss_dssp STTSEEEEEECT-----TSCEEEECCSSCCHHHHHHHHHHHTSSCEETT
T ss_pred cccceeeeeecc-----CCceeeeccCccHHHHHHHhcccceeEECCCC
Confidence 4455555 6754 23367777899999999999999986443344
No 14
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.79 E-value=6.8 Score=25.38 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.8
Q ss_pred eccCChhHHHHHHHHHHhc
Q 030768 112 IYFNHPLFGKLLRDAEEEY 130 (171)
Q Consensus 112 ~yLnhPlF~eLL~~aeEEf 130 (171)
.||+...|++++.|+.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999997
No 15
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.90 E-value=9.5 Score=21.65 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=14.2
Q ss_pred cCChhHHHHHHHHHHhc
Q 030768 114 FNHPLFGKLLRDAEEEY 130 (171)
Q Consensus 114 LnhPlF~eLL~~aeEEf 130 (171)
|+...|++++.|+.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999999887
No 16
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.08 E-value=52 Score=21.29 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=24.4
Q ss_pred cceEEEEEeeccCChhHHHHHHHHHHhcCccCC
Q 030768 103 DFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQ 135 (171)
Q Consensus 103 d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~~ 135 (171)
..+|..|++. -.-...+.|++|-+.|||+.+
T Consensus 9 ~~rR~~VKvt--P~t~l~~VL~eaC~k~~~~~~ 39 (76)
T d2al3a1 9 NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 39 (76)
T ss_dssp TSCEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred CCcEEEEEeC--CCcCHHHHHHHHHHHhCCChh
Confidence 5789988874 344778999999999999753
Done!