Query 030770
Match_columns 171
No_of_seqs 149 out of 480
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 100.0 8.4E-30 2.9E-34 185.0 2.0 63 104-166 20-83 (85)
2 1wfh_A Zinc finger (AN1-like) 99.9 1.7E-26 5.8E-31 159.7 1.7 54 104-157 10-63 (64)
3 1wg2_A Zinc finger (AN1-like) 99.9 3.9E-26 1.3E-30 157.9 2.3 53 104-156 10-62 (64)
4 1wfl_A Zinc finger protein 216 99.9 5.7E-25 1.9E-29 155.8 4.6 52 104-155 20-71 (74)
5 1wfp_A Zinc finger (AN1-like) 99.9 2.9E-25 9.8E-30 157.4 2.2 53 104-156 20-72 (74)
6 1x4w_A Hypothetical protein FL 99.9 7E-25 2.4E-29 152.9 -0.2 53 104-156 10-65 (67)
7 2kzy_A ZNF216-A20, zfand5 prot 99.8 3E-19 1E-23 122.5 4.9 38 12-49 9-46 (62)
8 2c7n_A Rabex-5, GEF 1, RAB gua 99.7 4.5E-19 1.5E-23 125.1 3.2 43 5-48 6-48 (74)
9 3oj3_I Tumor necrosis factor a 99.6 1.7E-16 5.8E-21 103.8 2.7 27 17-43 19-46 (49)
10 1wfe_A Riken cDNA 2310008M20 p 99.3 3E-13 1E-17 98.1 1.0 59 105-171 21-82 (86)
11 1x4v_A Hypothetical protein LO 99.3 1.4E-12 4.7E-17 89.8 3.0 41 104-145 7-50 (63)
12 1wys_A Riken cDNA 2310008M20 p 99.2 3.3E-12 1.1E-16 90.6 1.6 42 108-150 13-57 (75)
13 2eqe_A Tumor necrosis factor, 97.9 5.7E-06 2E-10 53.4 2.8 29 15-43 14-43 (48)
14 1vfy_A Phosphatidylinositol-3- 90.4 0.13 4.3E-06 35.0 2.0 28 110-137 12-42 (73)
15 2yw8_A RUN and FYVE domain-con 89.1 0.22 7.7E-06 34.5 2.5 28 109-136 19-49 (82)
16 1wfk_A Zinc finger, FYVE domai 88.6 0.29 9.9E-06 34.6 2.9 29 108-136 8-39 (88)
17 1joc_A EEA1, early endosomal a 88.2 0.19 6.5E-06 37.6 1.8 28 109-136 69-99 (125)
18 1x4u_A Zinc finger, FYVE domai 88.2 0.34 1.2E-05 33.6 3.0 28 109-136 14-44 (84)
19 1z2q_A LM5-1; membrane protein 88.1 0.3 1E-05 33.9 2.6 29 108-136 20-51 (84)
20 1dvp_A HRS, hepatocyte growth 86.6 0.29 9.8E-06 39.3 2.0 28 109-136 161-191 (220)
21 3zyq_A Hepatocyte growth facto 86.5 0.49 1.7E-05 38.4 3.4 28 109-136 164-194 (226)
22 3t7l_A Zinc finger FYVE domain 85.5 0.37 1.3E-05 34.0 1.9 27 109-135 20-49 (90)
23 1y02_A CARP2, FYVE-ring finger 82.8 0.5 1.7E-05 35.5 1.7 41 109-149 19-65 (120)
24 2vrw_B P95VAV, VAV1, proto-onc 77.1 1.3 4.3E-05 38.0 2.6 41 107-149 355-400 (406)
25 1z60_A TFIIH basal transcripti 74.5 1.2 4.2E-05 29.6 1.4 35 111-145 17-56 (59)
26 3c5k_A HD6, histone deacetylas 69.1 2 6.9E-05 31.5 1.7 30 109-142 24-54 (109)
27 2eqg_A Tumor necrosis factor, 68.9 3.4 0.00012 26.3 2.5 27 17-43 12-39 (49)
28 3mpx_A FYVE, rhogef and PH dom 68.1 1.1 3.7E-05 38.5 0.0 28 109-136 375-405 (434)
29 2eqf_A Tumor necrosis factor, 66.5 2.9 9.8E-05 26.4 1.8 23 19-41 13-35 (46)
30 1wd2_A Ariadne-1 protein homol 63.7 4.2 0.00014 26.6 2.3 29 108-136 5-40 (60)
31 4b6d_A RAC GTPase-activating p 58.2 2.7 9.3E-05 27.6 0.6 23 108-130 18-43 (61)
32 4ayb_P DNA-directed RNA polyme 58.0 5.5 0.00019 25.6 2.0 18 124-141 4-24 (48)
33 2yqq_A Zinc finger HIT domain- 53.4 7.7 0.00026 25.4 2.1 24 109-135 12-36 (56)
34 1kbe_A Kinase suppressor of RA 49.0 5.9 0.0002 25.0 1.0 22 110-132 15-37 (49)
35 1r79_A Diacylglycerol kinase, 47.9 10 0.00036 26.5 2.3 23 109-131 38-65 (84)
36 2gmg_A Hypothetical protein PF 47.5 7.9 0.00027 28.5 1.6 26 118-145 62-88 (105)
37 1ef4_A Subunit N, DNA-directed 45.4 5.8 0.0002 26.1 0.6 13 108-120 2-14 (55)
38 1twf_J DNA-directed RNA polyme 44.3 7.3 0.00025 26.8 1.0 14 108-121 3-16 (70)
39 2fnf_X Putative RAS effector N 43.7 12 0.00042 25.0 2.0 26 107-132 33-59 (72)
40 2co8_A NEDD9 interacting prote 42.3 14 0.00046 24.6 2.1 29 110-138 43-73 (82)
41 2enz_A NPKC-theta, protein kin 41.3 33 0.0011 22.0 3.8 25 108-132 22-50 (65)
42 1e0f_I Haemadin, factor IIA; c 39.6 19 0.00064 23.2 2.3 30 120-149 13-42 (57)
43 4ayb_N DNA-directed RNA polyme 37.4 8.9 0.0003 26.1 0.5 13 108-120 3-15 (66)
44 1rfh_A RAS association (ralgds 37.4 11 0.00037 24.2 0.9 25 107-131 20-45 (59)
45 3ky9_A Proto-oncogene VAV; cal 37.3 15 0.00053 33.0 2.2 39 107-147 527-570 (587)
46 3h0g_L DNA-directed RNA polyme 37.2 17 0.0006 24.3 2.0 26 107-132 19-48 (63)
47 2yuu_A NPKC-delta, protein kin 34.7 21 0.00071 24.2 2.1 25 108-132 27-55 (83)
48 1x68_A FHL5 protein; four-and- 33.4 22 0.00074 23.0 2.0 28 110-137 36-63 (76)
49 4gzn_C ZFP-57, zinc finger pro 32.7 12 0.00042 23.6 0.6 28 108-135 3-45 (60)
50 2uzg_A Ubiquitin carboxyl-term 32.1 30 0.001 24.4 2.6 26 109-135 25-53 (97)
51 3f6q_B LIM and senescent cell 31.9 11 0.00038 23.6 0.3 25 111-135 41-65 (72)
52 1x4s_A Protein FON, zinc finge 31.1 12 0.00042 24.8 0.4 26 110-135 12-39 (59)
53 1faq_A RAF-1; transferase, ser 30.8 14 0.00048 22.5 0.6 24 108-132 13-37 (52)
54 2lce_A B-cell lymphoma 6 prote 30.8 26 0.00088 21.6 1.9 28 107-134 15-57 (74)
55 2d8x_A Protein pinch; LIM doma 30.7 15 0.0005 23.3 0.7 27 110-136 32-58 (70)
56 3uej_A NPKC-delta, protein kin 30.3 27 0.00093 22.4 2.0 24 108-131 19-46 (65)
57 1l1o_C Replication protein A 7 30.2 16 0.00054 28.3 0.9 30 109-138 43-79 (181)
58 1bbo_A Human enhancer-binding 29.1 23 0.00079 20.4 1.4 12 123-134 29-41 (57)
59 1ptq_A Protein kinase C delta 28.9 31 0.0011 20.6 2.0 24 108-131 10-37 (50)
60 2m0d_A Zinc finger and BTB dom 28.5 16 0.00055 17.7 0.5 12 123-134 3-15 (30)
61 1vd4_A Transcription initiatio 28.1 16 0.00055 22.3 0.6 26 108-133 13-50 (62)
62 2ysj_A Tripartite motif-contai 27.9 63 0.0022 19.6 3.4 27 108-135 19-45 (63)
63 2dj8_A Protein CBFA2T1; zinc f 27.7 56 0.0019 20.6 3.2 24 108-134 14-39 (60)
64 1znf_A 31ST zinc finger from X 27.6 17 0.00059 17.4 0.5 11 124-134 2-13 (27)
65 2kvh_A Zinc finger and BTB dom 27.4 18 0.00061 17.5 0.6 12 123-134 3-15 (27)
66 4gne_A Histone-lysine N-methyl 27.3 29 0.00099 25.1 1.9 26 111-139 60-86 (107)
67 3uk3_C Zinc finger protein 217 26.4 25 0.00087 20.2 1.2 11 109-119 4-14 (57)
68 2csz_A Synaptotagmin-like prot 26.1 39 0.0013 23.4 2.3 32 107-138 23-58 (76)
69 1nyp_A Pinch protein; LIM doma 26.0 20 0.00067 22.4 0.7 26 110-135 32-57 (66)
70 1x4l_A Skeletal muscle LIM-pro 25.8 20 0.0007 22.7 0.7 27 110-136 36-62 (72)
71 2elq_A Zinc finger protein 406 25.7 27 0.00093 18.1 1.2 14 121-134 7-21 (36)
72 1p7a_A BF3, BKLF, kruppel-like 25.7 27 0.00094 18.2 1.2 12 123-134 11-23 (37)
73 1x64_A Alpha-actinin-2 associa 25.6 20 0.00069 23.9 0.7 11 109-119 25-35 (89)
74 1ard_A Yeast transcription fac 25.5 20 0.00068 17.3 0.5 12 123-134 2-14 (29)
75 1paa_A Yeast transcription fac 25.3 20 0.00067 17.6 0.5 13 123-135 2-15 (30)
76 2kwq_A Protein MCM10 homolog; 25.2 25 0.00085 25.2 1.2 20 123-142 48-67 (92)
77 2a20_A Regulating synaptic mem 25.1 50 0.0017 22.1 2.6 30 106-135 6-38 (62)
78 1x61_A Thyroid receptor intera 25.0 21 0.00072 22.6 0.7 23 111-133 35-57 (72)
79 2adr_A ADR1; transcription reg 24.9 29 0.00099 20.3 1.3 11 123-133 30-41 (60)
80 2lvu_A Zinc finger and BTB dom 30.4 16 0.00054 17.6 0.0 13 123-135 2-15 (26)
81 1zbd_B Rabphilin-3A; G protein 24.4 32 0.0011 25.8 1.7 28 108-135 54-85 (134)
82 1yop_A KTI11P; zinc finger, me 24.3 18 0.00063 25.3 0.3 16 122-137 22-37 (83)
83 2kvg_A Zinc finger and BTB dom 24.1 20 0.0007 17.5 0.4 12 123-134 3-15 (27)
84 3j21_g 50S ribosomal protein L 23.9 26 0.00087 22.5 0.9 24 108-131 13-37 (51)
85 1y8f_A UNC-13 homolog A, MUNC1 23.8 43 0.0015 21.6 2.0 24 108-131 23-50 (66)
86 2zet_C Melanophilin; complex, 23.8 28 0.00097 26.7 1.3 30 108-137 67-100 (153)
87 2ecj_A Tripartite motif-contai 23.5 89 0.003 18.3 3.4 26 109-135 15-40 (58)
88 2od1_A Protein CBFA2T1; zinc f 23.4 43 0.0015 21.2 2.0 24 108-134 12-37 (60)
89 2kvf_A Zinc finger and BTB dom 23.3 24 0.00083 17.0 0.6 13 123-135 3-16 (28)
90 2ehe_A Four and A half LIM dom 23.2 42 0.0014 21.7 1.9 28 110-137 44-71 (82)
91 2elx_A Zinc finger protein 406 23.1 29 0.001 17.6 1.0 13 122-134 6-19 (35)
92 1x4k_A Skeletal muscle LIM-pro 23.0 25 0.00086 22.1 0.8 25 111-135 35-59 (72)
93 2m0e_A Zinc finger and BTB dom 22.7 29 0.00098 16.5 0.8 12 124-135 3-15 (29)
94 2m0f_A Zinc finger and BTB dom 22.6 23 0.0008 16.9 0.5 12 123-134 2-14 (29)
95 2d8t_A Dactylidin, ring finger 22.5 73 0.0025 20.0 3.0 48 108-156 14-64 (71)
96 2jr7_A DPH3 homolog; DESR1, CS 22.5 21 0.00073 25.4 0.4 13 122-134 22-34 (89)
97 1g47_A Pinch protein; LIM doma 22.0 21 0.00072 22.9 0.2 9 111-119 13-21 (77)
98 1rik_A E6APC1 peptide; E6-bind 22.0 26 0.00089 16.9 0.6 13 123-135 2-15 (29)
99 2elo_A Zinc finger protein 406 21.8 32 0.0011 17.8 1.0 13 122-134 8-21 (37)
100 1klr_A Zinc finger Y-chromosom 21.7 26 0.00087 16.9 0.5 11 124-134 3-14 (30)
101 3u50_C Telomerase-associated p 21.5 22 0.00074 27.9 0.3 29 111-139 44-76 (172)
102 2jw6_A Deformed epidermal auto 21.2 43 0.0015 20.2 1.6 25 108-135 8-34 (52)
103 1jm7_B BARD1, BRCA1-associated 21.1 46 0.0016 23.3 1.9 36 109-146 22-60 (117)
104 2lv2_A Insulinoma-associated p 21.1 44 0.0015 22.4 1.8 28 108-135 27-69 (85)
105 2yur_A Retinoblastoma-binding 21.0 76 0.0026 20.2 2.9 26 109-135 15-41 (74)
106 1x6e_A Zinc finger protein 24; 20.9 27 0.00094 21.4 0.6 12 108-119 13-24 (72)
107 2gqj_A Zinc finger protein KIA 20.9 24 0.00083 23.4 0.4 13 108-120 23-35 (98)
108 1wil_A KIAA1045 protein; ring 20.8 71 0.0024 22.8 2.8 25 108-132 14-39 (89)
109 2cu8_A Cysteine-rich protein 2 20.6 43 0.0015 21.4 1.6 25 110-134 37-61 (76)
110 3mhs_A Ubiquitin carboxyl-term 20.6 19 0.00064 31.1 -0.3 33 110-142 49-82 (476)
111 1wyh_A SLIM 2, skeletal muscle 20.5 28 0.00097 21.9 0.6 26 110-135 34-59 (72)
112 2elt_A Zinc finger protein 406 20.5 35 0.0012 17.5 0.9 13 122-134 8-21 (36)
113 2d8z_A Four and A half LIM dom 20.5 30 0.001 21.7 0.7 24 111-134 33-56 (70)
114 2ysl_A Tripartite motif-contai 20.4 88 0.003 19.4 3.1 27 108-135 19-45 (73)
115 2row_A RHO-associated protein 20.3 22 0.00075 24.8 0.0 41 108-148 34-83 (84)
116 1wge_A Hypothetical protein 26 20.3 26 0.0009 24.5 0.4 15 121-135 28-42 (83)
117 1srk_A Zinc finger protein ZFP 20.3 37 0.0013 17.4 1.0 13 122-134 6-19 (35)
118 2lvt_A Zinc finger and BTB dom 25.7 22 0.00074 17.4 0.0 13 123-135 2-15 (29)
119 1a7i_A QCRP2 (LIM1); LIM domai 20.2 28 0.00096 22.6 0.6 24 111-134 36-59 (81)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.95 E-value=8.4e-30 Score=184.99 Aligned_cols=63 Identities=43% Similarity=0.974 Sum_probs=59.9
Q ss_pred CCCCCCCCCcccccccCCC-ceeeecCccccCCcCCCCCCCCcccchHhhHHHHHHhCCccccc
Q 030770 104 PQAKGPTRCLSCNKKVGLT-GFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKAD 166 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~-gf~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~l~k~np~vka~ 166 (171)
.+++.++||+.|+|||||+ +|.||||++||+.|||||+|+|+||||++||++|+|+||+|+|+
T Consensus 20 ~~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 20 TKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred cCcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 3567789999999999996 99999999999999999999999999999999999999999986
No 2
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=1.7e-26 Score=159.69 Aligned_cols=54 Identities=57% Similarity=1.262 Sum_probs=50.9
Q ss_pred CCCCCCCCCcccccccCCCceeeecCccccCCcCCCCCCCCcccchHhhHHHHH
Q 030770 104 PQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIA 157 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~l~ 157 (171)
++++.+|||+.|+|||+|++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 456778999999999999999999999999999999999999999999999875
No 3
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.91 E-value=3.9e-26 Score=157.93 Aligned_cols=53 Identities=64% Similarity=1.320 Sum_probs=50.0
Q ss_pred CCCCCCCCCcccccccCCCceeeecCccccCCcCCCCCCCCcccchHhhHHHH
Q 030770 104 PQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAI 156 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~l 156 (171)
.+++.+|||+.|+|+|+|++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 10 ~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 45667899999999999999999999999999999999999999999999876
No 4
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.90 E-value=5.7e-25 Score=155.82 Aligned_cols=52 Identities=48% Similarity=1.179 Sum_probs=48.6
Q ss_pred CCCCCCCCCcccccccCCCceeeecCccccCCcCCCCCCCCcccchHhhHHH
Q 030770 104 PQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDA 155 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~ 155 (171)
..++.+|||+.|+|||||++|.||||++||+.|||+|+|+|+||||++||++
T Consensus 20 ~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfl_A 20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP 71 (74)
T ss_dssp CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred cCCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence 4566789999999999999999999999999999999999999999999874
No 5
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.90 E-value=2.9e-25 Score=157.36 Aligned_cols=53 Identities=66% Similarity=1.338 Sum_probs=50.2
Q ss_pred CCCCCCCCCcccccccCCCceeeecCccccCCcCCCCCCCCcccchHhhHHHH
Q 030770 104 PQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAI 156 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~l 156 (171)
++++.++||+.|+|+|+|++|.||||++||+.|||||+|+|+||||++||++|
T Consensus 20 ~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 20 PPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS 72 (74)
T ss_dssp CTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred cCcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence 45778899999999999999999999999999999999999999999999876
No 6
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=7e-25 Score=152.88 Aligned_cols=53 Identities=42% Similarity=0.911 Sum_probs=49.2
Q ss_pred CCCCCCCCCcccccccCCCc---eeeecCccccCCcCCCCCCCCcccchHhhHHHH
Q 030770 104 PQAKGPTRCLSCNKKVGLTG---FKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAI 156 (171)
Q Consensus 104 ~~k~~~~rC~~C~kk~gl~g---f~CrCg~~fC~~HR~~e~H~C~~Dyk~~~r~~l 156 (171)
++++.++||+.|+|||+|++ |.||||++||+.|||||+|+|+||||++||+.|
T Consensus 10 ~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~ 65 (67)
T 1x4w_A 10 SKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65 (67)
T ss_dssp CSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred cCCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence 45677899999999999994 999999999999999999999999999999764
No 7
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.76 E-value=3e-19 Score=122.54 Aligned_cols=38 Identities=34% Similarity=0.935 Sum_probs=33.4
Q ss_pred CCCCccchhcCCCCCCccccCCchhHHhHHHHHhHHHH
Q 030770 12 TTSEPKLCVNGCAFFGTAANMGLCSKCYRDLRVKEDQA 49 (171)
Q Consensus 12 ~~~~p~lC~n~CGFfGs~at~n~CSkCyrd~~~ke~~~ 49 (171)
++++|+||+|||||||||+|+|||||||||+++++++.
T Consensus 9 ~~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~ 46 (62)
T 2kzy_A 9 QTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 46 (62)
T ss_dssp CCSCCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHH
T ss_pred CCCcccchhhCCCCcCChhhcCcCHHHHHHHHHhhhcc
Confidence 36789999999999999999999999999998655544
No 8
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.74 E-value=4.5e-19 Score=125.13 Aligned_cols=43 Identities=35% Similarity=0.781 Sum_probs=27.8
Q ss_pred ccCCCccCCCCccchhcCCCCCCccccCCchhHHhHHHHHhHHH
Q 030770 5 QSDGTSYTTSEPKLCVNGCAFFGTAANMGLCSKCYRDLRVKEDQ 48 (171)
Q Consensus 5 ~~~~~~~~~~~p~lC~n~CGFfGs~at~n~CSkCyrd~~~ke~~ 48 (171)
+..+++ .|++|+||+|||||||||+|+|||||||||++.+..+
T Consensus 6 ~~~~~q-~pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~~q 48 (74)
T 2c7n_A 6 ERRGIH-VDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKARQ 48 (74)
T ss_dssp -------------CCTTCSSSCCCGGGTTCCHHHHHHHHHHHHH
T ss_pred hhccCC-CCCcchhHHhCCCCCCChhhcCccHHHHHHHHHHHHH
Confidence 456677 7899999999999999999999999999998754433
No 9
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.61 E-value=1.7e-16 Score=103.79 Aligned_cols=27 Identities=41% Similarity=1.115 Sum_probs=26.0
Q ss_pred cchh-cCCCCCCccccCCchhHHhHHHH
Q 030770 17 KLCV-NGCAFFGTAANMGLCSKCYRDLR 43 (171)
Q Consensus 17 ~lC~-n~CGFfGs~at~n~CSkCyrd~~ 43 (171)
+||+ |||||||||+|+|||||||||++
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CSkCyre~~ 46 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCTLCFIEYR 46 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCHHHHHHHH
T ss_pred cccccCCCCCccCcccCCcchHHHHHHH
Confidence 6999 99999999999999999999986
No 10
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.30 E-value=3e-13 Score=98.12 Aligned_cols=59 Identities=22% Similarity=0.437 Sum_probs=49.9
Q ss_pred CCCCCCCCcc--cccccCCCceeee-cCccccCCcCCCCCCCCcccchHhhHHHHHHhCCccccccccCC
Q 030770 105 QAKGPTRCLS--CNKKVGLTGFKCK-CGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 171 (171)
Q Consensus 105 ~k~~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~e~H~C~~Dyk~~~r~~l~k~np~vka~Ki~KI 171 (171)
.+..++||+. |+++ ++++|.|+ |+.+||..|||+++|+|... .+.+.++...++++++|
T Consensus 21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~~~ 82 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVRSG 82 (86)
T ss_dssp SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSSCS
T ss_pred cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHHHH
Confidence 4556799998 9998 68999997 99999999999999999874 34677888888887765
No 11
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=89.77 Aligned_cols=41 Identities=29% Similarity=0.786 Sum_probs=37.3
Q ss_pred CCCCCCCCCcc--cccccCCCceeee-cCccccCCcCCCCCCCCc
Q 030770 104 PQAKGPTRCLS--CNKKVGLTGFKCK-CGSTFCGIHRYPEKHDCT 145 (171)
Q Consensus 104 ~~k~~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~e~H~C~ 145 (171)
.++...+||.. |+++ +|++|.|+ |+.+||..|||+|+|+|.
T Consensus 7 k~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 7 GRKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp CCCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCC
T ss_pred CCcccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCC
Confidence 35567899998 9998 79999997 999999999999999997
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.20 E-value=3.3e-12 Score=90.62 Aligned_cols=42 Identities=29% Similarity=0.642 Sum_probs=38.2
Q ss_pred CCCCCcc--cccccCCCceeee-cCccccCCcCCCCCCCCcccchH
Q 030770 108 GPTRCLS--CNKKVGLTGFKCK-CGSTFCGIHRYPEKHDCTFDFKV 150 (171)
Q Consensus 108 ~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~e~H~C~~Dyk~ 150 (171)
..+||.. |+++ ++++|+|+ |+.+||..|||+++|+|+++++.
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~~ 57 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVV 57 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSSC
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCccc
Confidence 4689998 9997 79999997 99999999999999999999873
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.91 E-value=5.7e-06 Score=53.40 Aligned_cols=29 Identities=34% Similarity=0.974 Sum_probs=26.1
Q ss_pred Cccchh-cCCCCCCccccCCchhHHhHHHH
Q 030770 15 EPKLCV-NGCAFFGTAANMGLCSKCYRDLR 43 (171)
Q Consensus 15 ~p~lC~-n~CGFfGs~at~n~CSkCyrd~~ 43 (171)
+...|. .||-|||+|.+.++|+.||.++.
T Consensus 14 gt~kCRk~GC~fFGTpen~GFCTlCf~eyr 43 (48)
T 2eqe_A 14 GTSKCRKAGCVYFGTPENKGFCTLCFIEYS 43 (48)
T ss_dssp CSSBCSSTTCCSBCCTTTTTCCHHHHHHHH
T ss_pred ccchhhhcCCCcccCcccCceeeeehhhhh
Confidence 346896 99999999999999999999984
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=90.44 E-value=0.13 Score=35.00 Aligned_cols=28 Identities=39% Similarity=1.030 Sum_probs=23.9
Q ss_pred CCCcccccccCCC--ceeee-cCccccCCcC
Q 030770 110 TRCLSCNKKVGLT--GFKCK-CGSTFCGIHR 137 (171)
Q Consensus 110 ~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~HR 137 (171)
..|..|+++.+++ --.|| ||.+||+.+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CcccCCCCccCCccccccCCCCCEEEccccc
Confidence 4799999999887 48996 9999999853
No 15
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.07 E-value=0.22 Score=34.45 Aligned_cols=28 Identities=32% Similarity=0.980 Sum_probs=23.8
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 45799999999886 48996 999999974
No 16
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=88.65 E-value=0.29 Score=34.57 Aligned_cols=29 Identities=38% Similarity=0.882 Sum_probs=24.3
Q ss_pred CCCCCcccccccCCCc--eeee-cCccccCCc
Q 030770 108 GPTRCLSCNKKVGLTG--FKCK-CGSTFCGIH 136 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~g--f~Cr-Cg~~fC~~H 136 (171)
....|..|.++.+++. -.|| ||.+||+.+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 3468999999998874 8896 999999974
No 17
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=88.24 E-value=0.19 Score=37.64 Aligned_cols=28 Identities=32% Similarity=0.949 Sum_probs=23.7
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 46899999998876 48996 999999874
No 18
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.23 E-value=0.34 Score=33.58 Aligned_cols=28 Identities=25% Similarity=0.742 Sum_probs=23.9
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|.++.+++ --.|| ||.+||+..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 45899999998887 48997 999999974
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=88.08 E-value=0.3 Score=33.92 Aligned_cols=29 Identities=28% Similarity=0.705 Sum_probs=24.4
Q ss_pred CCCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 108 GPTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
....|..|+++.+++ --.|| ||.+||+.+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 456899999998887 48996 999999873
No 20
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.56 E-value=0.29 Score=39.34 Aligned_cols=28 Identities=32% Similarity=0.883 Sum_probs=24.1
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence 46999999998886 48997 999999974
No 21
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.50 E-value=0.49 Score=38.41 Aligned_cols=28 Identities=32% Similarity=0.981 Sum_probs=24.2
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence 46899999999886 58997 999999874
No 22
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=85.51 E-value=0.37 Score=34.02 Aligned_cols=27 Identities=37% Similarity=1.149 Sum_probs=23.4
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCC
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGI 135 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~ 135 (171)
...|..|.++.+++ -..|| ||.+||+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCc
Confidence 46799999999886 58996 99999987
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.81 E-value=0.5 Score=35.50 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCC---cCCCCCCCCcccch
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGI---HRYPEKHDCTFDFK 149 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~---HR~~e~H~C~~Dyk 149 (171)
...|..|+++..++ --.|| ||.+||+. |+.+..--|..=|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 35899999998876 48897 99999987 56665555664443
No 24
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=77.13 E-value=1.3 Score=37.95 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=27.5
Q ss_pred CCCCCCccccccc-CCC--ceeee-cCccccCC-cCCCCCCCCcccch
Q 030770 107 KGPTRCLSCNKKV-GLT--GFKCK-CGSTFCGI-HRYPEKHDCTFDFK 149 (171)
Q Consensus 107 ~~~~rC~~C~kk~-gl~--gf~Cr-Cg~~fC~~-HR~~e~H~C~~Dyk 149 (171)
..+..|..|++.+ |+. |+.|| ||.++|.. |...- . |.-+.-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~-C~~~~~ 400 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-P-CGRHGQ 400 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-C-C-----
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-C-CCCCch
Confidence 3578999999988 564 89996 99999998 33333 3 977654
No 25
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.46 E-value=1.2 Score=29.57 Aligned_cols=35 Identities=23% Similarity=0.605 Sum_probs=26.1
Q ss_pred CCcccccccCCCc-eee-ecCccccCC---cCCCCCCCCc
Q 030770 111 RCLSCNKKVGLTG-FKC-KCGSTFCGI---HRYPEKHDCT 145 (171)
Q Consensus 111 rC~~C~kk~gl~g-f~C-rCg~~fC~~---HR~~e~H~C~ 145 (171)
.|+.|.+.+...+ |.| +|+..||.. -.+-.-|.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CP 56 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCP 56 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCc
Confidence 4999999886555 999 799999965 3334456665
No 26
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=69.05 E-value=2 Score=31.47 Aligned_cols=30 Identities=30% Similarity=0.794 Sum_probs=22.3
Q ss_pred CCCCcccccccCCCceee-ecCccccCCcCCCCCC
Q 030770 109 PTRCLSCNKKVGLTGFKC-KCGSTFCGIHRYPEKH 142 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~C-rCg~~fC~~HR~~e~H 142 (171)
..+|..|.....+ ..| .||.++|+ |++..|
T Consensus 24 ~~~C~~C~~~~~~--W~CL~CG~vgCg--r~~~~H 54 (109)
T 3c5k_A 24 TQPCGDCGTIQEN--WVCLSCYQVYCG--RYINGH 54 (109)
T ss_dssp TCCCTTTCCCSSE--EEETTTCCEEEC--TTTTCH
T ss_pred CCcCccccCCCCe--eeeeecCccccC--CCcChH
Confidence 4689999886554 679 79999998 444444
No 27
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=68.89 E-value=3.4 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.669 Sum_probs=22.7
Q ss_pred cch-hcCCCCCCccccCCchhHHhHHHH
Q 030770 17 KLC-VNGCAFFGTAANMGLCSKCYRDLR 43 (171)
Q Consensus 17 ~lC-~n~CGFfGs~at~n~CSkCyrd~~ 43 (171)
+.| .-||-||=|-.|+-+|-.||...+
T Consensus 12 vkCeTPnCpF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 12 VKCETPNCPFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp SBCSSTTCCSBCCTTTTTSCHHHHHHHH
T ss_pred EeecCCCCCeEEEecCccchHHHHHHHh
Confidence 346 568999999999999999998653
No 28
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=68.06 E-value=1.1 Score=38.53 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=0.0
Q ss_pred CCCCcccccccCCC--ceeee-cCccccCCc
Q 030770 109 PTRCLSCNKKVGLT--GFKCK-CGSTFCGIH 136 (171)
Q Consensus 109 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H 136 (171)
...|..|++..+++ ...|| ||.+||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 56899999988876 58996 999999763
No 29
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=66.54 E-value=2.9 Score=26.37 Aligned_cols=23 Identities=30% Similarity=0.790 Sum_probs=20.9
Q ss_pred hhcCCCCCCccccCCchhHHhHH
Q 030770 19 CVNGCAFFGTAANMGLCSKCYRD 41 (171)
Q Consensus 19 C~n~CGFfGs~at~n~CSkCyrd 41 (171)
++-+|.-|||.--+++|--||.-
T Consensus 13 ~apgCdhygN~kc~GyCNeC~~f 35 (46)
T 2eqf_A 13 RAPACDHFGNAKCNGYCNECFQF 35 (46)
T ss_dssp SSTTCCSCCBGGGTBSCHHHHHH
T ss_pred cCcccccccchhhhhhhHHHHhh
Confidence 48899999999999999999964
No 30
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.69 E-value=4.2 Score=26.62 Aligned_cols=29 Identities=24% Similarity=0.804 Sum_probs=24.0
Q ss_pred CCCCCcccccccCCCc----eeee---cCccccCCc
Q 030770 108 GPTRCLSCNKKVGLTG----FKCK---CGSTFCGIH 136 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~g----f~Cr---Cg~~fC~~H 136 (171)
...+|..|+..+.+.+ .+|+ |+..||..-
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C 40 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVC 40 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSS
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCc
Confidence 4578999999888863 7997 999999873
No 31
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=58.23 E-value=2.7 Score=27.64 Aligned_cols=23 Identities=30% Similarity=1.009 Sum_probs=18.1
Q ss_pred CCCCCcccccccCC--Cceeee-cCc
Q 030770 108 GPTRCLSCNKKVGL--TGFKCK-CGS 130 (171)
Q Consensus 108 ~~~rC~~C~kk~gl--~gf~Cr-Cg~ 130 (171)
.+.+|..|++++++ .+++|+ |+.
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSC
T ss_pred CCcccccccCEEEEeeEeeECCCCCC
Confidence 45789999999876 479996 753
No 32
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=58.04 E-value=5.5 Score=25.56 Aligned_cols=18 Identities=33% Similarity=0.744 Sum_probs=7.7
Q ss_pred eee-ecCccccCC--cCCCCC
Q 030770 124 FKC-KCGSTFCGI--HRYPEK 141 (171)
Q Consensus 124 f~C-rCg~~fC~~--HR~~e~ 141 (171)
+.| |||.+|-.. +|+|+-
T Consensus 4 Y~C~rCg~~fs~~el~~lP~I 24 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGV 24 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSS
T ss_pred EEeeccCCCccHHHHhhCCCc
Confidence 344 455555443 344443
No 33
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.38 E-value=7.7 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.899 Sum_probs=20.5
Q ss_pred CCCCcccccccCCCceee-ecCccccCC
Q 030770 109 PTRCLSCNKKVGLTGFKC-KCGSTFCGI 135 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~C-rCg~~fC~~ 135 (171)
...|..|+. ..-|+| ||+..||+.
T Consensus 12 ~~~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 12 TVVCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCCTTTCS---CCSEECTTTCCEESSH
T ss_pred CCccCcCcC---CCeeeCCCCCCCeeCH
Confidence 457999987 567999 899999996
No 34
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=49.02 E-value=5.9 Score=25.05 Aligned_cols=22 Identities=36% Similarity=0.841 Sum_probs=17.5
Q ss_pred CCCcccccccCCCceeee-cCccc
Q 030770 110 TRCLSCNKKVGLTGFKCK-CGSTF 132 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~Cr-Cg~~f 132 (171)
..|..|++.| ..|++|+ |+.++
T Consensus 15 t~C~~C~k~i-~~G~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSM-IFGVKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSS-CCEEEETTTTEEE
T ss_pred cCccccCcee-ECcCCCCCCCCcc
Confidence 5799999988 5799995 87654
No 35
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=47.87 E-value=10 Score=26.49 Aligned_cols=23 Identities=26% Similarity=0.863 Sum_probs=17.6
Q ss_pred CCCCccccccc----CCCceeee-cCcc
Q 030770 109 PTRCLSCNKKV----GLTGFKCK-CGST 131 (171)
Q Consensus 109 ~~rC~~C~kk~----gl~gf~Cr-Cg~~ 131 (171)
..+|..|+|.. +|.||+|. |+.+
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~ 65 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAM 65 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChh
Confidence 36899999984 46799994 7655
No 36
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.46 E-value=7.9 Score=28.54 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=15.4
Q ss_pred ccCCCceeee-cCccccCCcCCCCCCCCc
Q 030770 118 KVGLTGFKCK-CGSTFCGIHRYPEKHDCT 145 (171)
Q Consensus 118 k~gl~gf~Cr-Cg~~fC~~HR~~e~H~C~ 145 (171)
+|-...++|+ ||++|. -+......|+
T Consensus 62 ~L~v~p~~C~~CG~~F~--~~~~kPsrCP 88 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK--AEINIPSRCP 88 (105)
T ss_dssp EEEECCCBBTTTCCBCC--CCSSCCSSCS
T ss_pred EEEEECcChhhCcCeec--ccCCCCCCCc
Confidence 4545678884 888882 2344445554
No 37
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=45.37 E-value=5.8 Score=26.10 Aligned_cols=13 Identities=62% Similarity=1.122 Sum_probs=10.4
Q ss_pred CCCCCcccccccC
Q 030770 108 GPTRCLSCNKKVG 120 (171)
Q Consensus 108 ~~~rC~~C~kk~g 120 (171)
.|.||++|+|-+|
T Consensus 2 iPVRCFTCGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLSCGKPVS 14 (55)
T ss_dssp CSSSCSCTTSCCH
T ss_pred CCeecCCCCCChh
Confidence 3679999999664
No 38
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=44.29 E-value=7.3 Score=26.78 Aligned_cols=14 Identities=57% Similarity=1.049 Sum_probs=11.4
Q ss_pred CCCCCcccccccCC
Q 030770 108 GPTRCLSCNKKVGL 121 (171)
Q Consensus 108 ~~~rC~~C~kk~gl 121 (171)
.|-||++|+|-+|-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 46799999997754
No 39
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=43.69 E-value=12 Score=25.03 Aligned_cols=26 Identities=31% Similarity=0.693 Sum_probs=20.4
Q ss_pred CCCCCCcccccccCCCceeee-cCccc
Q 030770 107 KGPTRCLSCNKKVGLTGFKCK-CGSTF 132 (171)
Q Consensus 107 ~~~~rC~~C~kk~gl~gf~Cr-Cg~~f 132 (171)
..+..|..|+..+..-|++|. ||.+.
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFTC 59 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCEE
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCee
Confidence 357889999999955799996 87653
No 40
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.27 E-value=14 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=15.2
Q ss_pred CCCcccccccCCCceee--ecCccccCCcCC
Q 030770 110 TRCLSCNKKVGLTGFKC--KCGSTFCGIHRY 138 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~C--rCg~~fC~~HR~ 138 (171)
-+|..|++.|....|.. +=|..||..|..
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 34556666555544443 345566655543
No 41
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=41.33 E-value=33 Score=22.02 Aligned_cols=25 Identities=40% Similarity=0.914 Sum_probs=18.6
Q ss_pred CCCCCcccccccC-C--Cceeee-cCccc
Q 030770 108 GPTRCLSCNKKVG-L--TGFKCK-CGSTF 132 (171)
Q Consensus 108 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~f 132 (171)
.+..|..|++.+- | -|++|+ |+.+.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CCcCchhcChhheecCCcccccCCCCCcc
Confidence 4678999999773 3 489995 86654
No 42
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=39.56 E-value=19 Score=23.22 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=23.4
Q ss_pred CCCceeeecCccccCCcCCCCCCCCcccch
Q 030770 120 GLTGFKCKCGSTFCGIHRYPEKHDCTFDFK 149 (171)
Q Consensus 120 gl~gf~CrCg~~fC~~HR~~e~H~C~~Dyk 149 (171)
|-.|++|.||...|---..-.+..|+-|-|
T Consensus 13 gevgytcdcgekiclygqscndgqcsgdpk 42 (57)
T 1e0f_I 13 GEVGYTCDCGEKICLYGQSCNDGQCSGDPK 42 (57)
T ss_dssp SSCSSCEECSSSEECTTCCBSSSCBCSCCC
T ss_pred CceeeeccCCceeeEecccccCCcccCCCC
Confidence 456899999999988777777778887755
No 43
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=37.38 E-value=8.9 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.2
Q ss_pred CCCCCcccccccC
Q 030770 108 GPTRCLSCNKKVG 120 (171)
Q Consensus 108 ~~~rC~~C~kk~g 120 (171)
.|-||++|+|-++
T Consensus 3 IPVRCFTCGkvi~ 15 (66)
T 4ayb_N 3 IPIRCFTCGSLIA 15 (66)
T ss_dssp CCSBCTTTCCBCH
T ss_pred CCcccCCCcHhHH
Confidence 3679999999663
No 44
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=37.35 E-value=11 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=19.6
Q ss_pred CCCCCCcccccccCCCceeee-cCcc
Q 030770 107 KGPTRCLSCNKKVGLTGFKCK-CGST 131 (171)
Q Consensus 107 ~~~~rC~~C~kk~gl~gf~Cr-Cg~~ 131 (171)
..+..|..|++.+...|++|. |+.+
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKFT 45 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSCE
T ss_pred CCCeEchhcchhhhhCccEeCCCCCe
Confidence 346789999999955799995 7654
No 45
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=37.30 E-value=15 Score=33.00 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=27.7
Q ss_pred CCCCCCccccccc-CCC--ceeee-cCccccCC-cCCCCCCCCccc
Q 030770 107 KGPTRCLSCNKKV-GLT--GFKCK-CGSTFCGI-HRYPEKHDCTFD 147 (171)
Q Consensus 107 ~~~~rC~~C~kk~-gl~--gf~Cr-Cg~~fC~~-HR~~e~H~C~~D 147 (171)
..+..|..|++.+ |+. |+.|+ ||...|.. |.+. ..|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v--~~C~~~ 570 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV--PPCGRH 570 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS--CCC---
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC--CCCCCC
Confidence 3567899999987 664 89995 99999988 3333 378644
No 46
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.20 E-value=17 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=19.5
Q ss_pred CCCCCCcccccccCCC---ceeee-cCccc
Q 030770 107 KGPTRCLSCNKKVGLT---GFKCK-CGSTF 132 (171)
Q Consensus 107 ~~~~rC~~C~kk~gl~---gf~Cr-Cg~~f 132 (171)
.-..+|..|+..+.|. +..|+ ||+-.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 4568999999999885 58884 76543
No 47
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.68 E-value=21 Score=24.18 Aligned_cols=25 Identities=40% Similarity=0.945 Sum_probs=19.0
Q ss_pred CCCCCcccccccC-C--Cceeee-cCccc
Q 030770 108 GPTRCLSCNKKVG-L--TGFKCK-CGSTF 132 (171)
Q Consensus 108 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~f 132 (171)
.+..|..|++.|- | .|++|+ |+.++
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCcChhhcChhhccccccccccCCcCCee
Confidence 5678999999873 3 489995 87664
No 48
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.42 E-value=22 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=19.8
Q ss_pred CCCcccccccCCCceeeecCccccCCcC
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGIHR 137 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~HR 137 (171)
-+|..|++.|....|.=+=|..||..|-
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHh
Confidence 4677888877655666677778887754
No 49
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=32.74 E-value=12 Score=23.65 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCCCCcccccccCC--------------Cceee-ecCccccCC
Q 030770 108 GPTRCLSCNKKVGL--------------TGFKC-KCGSTFCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl--------------~gf~C-rCg~~fC~~ 135 (171)
.|-.|..|+|.... ..|.| .||..|-..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 45677777775432 25888 588888653
No 50
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=32.11 E-value=30 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.710 Sum_probs=19.1
Q ss_pred CCCCcccccccCCCceee-e--cCccccCC
Q 030770 109 PTRCLSCNKKVGLTGFKC-K--CGSTFCGI 135 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~C-r--Cg~~fC~~ 135 (171)
..+|..|.+. +..-+.| . ||.++|+.
T Consensus 25 ~~~C~~C~~~-~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQ-GPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCC-CSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCC-CCCceeeecccCCCcccCC
Confidence 4689999842 2223789 5 99999986
No 51
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.91 E-value=11 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=12.5
Q ss_pred CCcccccccCCCceeeecCccccCC
Q 030770 111 RCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 111 rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
+|..|++.|....|.=+=|..||..
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~ 65 (72)
T 3f6q_B 41 VCAQCFQQFPEGLFYEFEGRKYCEH 65 (72)
T ss_dssp SCTTTCCCCGGGCCEEETTEEECHH
T ss_pred cccCCCCCCCCCCeEeECCeEeCHH
Confidence 4556666554433443445555544
No 52
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=31.06 E-value=12 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.812 Sum_probs=20.0
Q ss_pred CCCcccccc-cCCCceee-ecCccccCC
Q 030770 110 TRCLSCNKK-VGLTGFKC-KCGSTFCGI 135 (171)
Q Consensus 110 ~rC~~C~kk-~gl~gf~C-rCg~~fC~~ 135 (171)
..|..|+.- ....-++| ||+..||+.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl 39 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSL 39 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccCh
Confidence 479999752 12457999 899999996
No 53
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=30.84 E-value=14 Score=22.48 Aligned_cols=24 Identities=38% Similarity=0.865 Sum_probs=18.8
Q ss_pred CCCCCcccccccCCCceeee-cCccc
Q 030770 108 GPTRCLSCNKKVGLTGFKCK-CGSTF 132 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~Cr-Cg~~f 132 (171)
.+..|..|++.+- -|++|+ |+.+.
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCB
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeE
Confidence 4678999999874 799995 87654
No 54
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.79 E-value=26 Score=21.62 Aligned_cols=28 Identities=25% Similarity=0.810 Sum_probs=18.4
Q ss_pred CCCCCCcccccccCC--------------Cceeee-cCccccC
Q 030770 107 KGPTRCLSCNKKVGL--------------TGFKCK-CGSTFCG 134 (171)
Q Consensus 107 ~~~~rC~~C~kk~gl--------------~gf~Cr-Cg~~fC~ 134 (171)
..+..|..|++.... ..|.|. ||..|-.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 346788888876532 248884 7777754
No 55
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.69 E-value=15 Score=23.30 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCcccccccCCCceeeecCccccCCc
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGIH 136 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c 58 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPC 58 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHH
Confidence 456677776655555545555666543
No 56
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=30.27 E-value=27 Score=22.35 Aligned_cols=24 Identities=46% Similarity=1.090 Sum_probs=17.7
Q ss_pred CCCCCccccccc-CC--Cceeee-cCcc
Q 030770 108 GPTRCLSCNKKV-GL--TGFKCK-CGST 131 (171)
Q Consensus 108 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.+ || -|++|+ |+.+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCcccccChhhhccCceeeECCCCCCe
Confidence 467899999986 33 389995 7654
No 57
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=30.15 E-value=16 Score=28.34 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=20.6
Q ss_pred CCCCcc--cccccCCC---ceee-ecCcccc-CCcCC
Q 030770 109 PTRCLS--CNKKVGLT---GFKC-KCGSTFC-GIHRY 138 (171)
Q Consensus 109 ~~rC~~--C~kk~gl~---gf~C-rCg~~fC-~~HR~ 138 (171)
-..|.. |+|||-.. .+.| +|+..|= -.|||
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry 79 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRM 79 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEE
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEE
Confidence 346777 99999653 2789 7987762 24666
No 58
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=29.14 E-value=23 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=7.2
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 29 ~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 29 PYHCTYCNFSFKT 41 (57)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCCCchhcC
Confidence 4777 36666643
No 59
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=28.90 E-value=31 Score=20.63 Aligned_cols=24 Identities=42% Similarity=0.944 Sum_probs=17.7
Q ss_pred CCCCCcccccccC-C--Cceeee-cCcc
Q 030770 108 GPTRCLSCNKKVG-L--TGFKCK-CGST 131 (171)
Q Consensus 108 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.+- | .|++|+ |+.+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 4678999999873 2 489995 7654
No 60
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.53 E-value=16 Score=17.70 Aligned_cols=12 Identities=33% Similarity=1.137 Sum_probs=7.8
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4677 47777754
No 61
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.14 E-value=16 Score=22.31 Aligned_cols=26 Identities=19% Similarity=0.536 Sum_probs=16.1
Q ss_pred CCCCCccccccc-----------CCCceee-ecCcccc
Q 030770 108 GPTRCLSCNKKV-----------GLTGFKC-KCGSTFC 133 (171)
Q Consensus 108 ~~~rC~~C~kk~-----------gl~gf~C-rCg~~fC 133 (171)
.+..|..|++.. +.-.|.| .||..|-
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 356677887632 2235888 4877774
No 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.90 E-value=63 Score=19.63 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=19.2
Q ss_pred CCCCCcccccccCCCceeeecCccccCC
Q 030770 108 GPTRCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
....|..|...+.. ...-.||.+||..
T Consensus 19 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 19 EEVICPICLDILQK-PVTIDCGHNFCLK 45 (63)
T ss_dssp CCCBCTTTCSBCSS-CEECTTSSEECHH
T ss_pred cCCCCCcCCchhCC-eEEeCCCCcchHH
Confidence 34679999875533 4445899999964
No 63
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=27.68 E-value=56 Score=20.60 Aligned_cols=24 Identities=29% Similarity=1.038 Sum_probs=16.8
Q ss_pred CCCCCcccccccCCCceee-ecCcc-ccC
Q 030770 108 GPTRCLSCNKKVGLTGFKC-KCGST-FCG 134 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~C-rCg~~-fC~ 134 (171)
...+|..|++. .-..| +|..+ ||+
T Consensus 14 ~~~~C~~C~~~---~~~~Cs~C~~v~YCs 39 (60)
T 2dj8_A 14 SSESCWNCGRK---ASETCSGCNTARYCG 39 (60)
T ss_dssp CSCCCSSSCSC---CCEECTTTSCCEESS
T ss_pred CCcccccCCCC---CcccCCCCCCEeeeC
Confidence 45789999883 35778 67664 665
No 64
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.59 E-value=17 Score=17.36 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=6.9
Q ss_pred eee-ecCccccC
Q 030770 124 FKC-KCGSTFCG 134 (171)
Q Consensus 124 f~C-rCg~~fC~ 134 (171)
|.| .||..|-.
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 566 47777654
No 65
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.43 E-value=18 Score=17.53 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=7.4
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4677 47776643
No 66
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.33 E-value=29 Score=25.15 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=20.1
Q ss_pred CCcccccccCCCceee-ecCccccCCcCCC
Q 030770 111 RCLSCNKKVGLTGFKC-KCGSTFCGIHRYP 139 (171)
Q Consensus 111 rC~~C~kk~gl~gf~C-rCg~~fC~~HR~~ 139 (171)
+|..|++.. .|.| .|...||..|...
T Consensus 60 ~C~~C~k~~---~~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 60 QCDECSSAA---VSFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp BCTTTCSBC---CEECSSSSCEECTTTCTT
T ss_pred CCCcCCCCC---CcCcCCCCcchhhhccCC
Confidence 467787754 4999 5999999998753
No 67
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.40 E-value=25 Score=20.22 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=6.0
Q ss_pred CCCCccccccc
Q 030770 109 PTRCLSCNKKV 119 (171)
Q Consensus 109 ~~rC~~C~kk~ 119 (171)
+..|..|++..
T Consensus 4 ~~~C~~C~~~f 14 (57)
T 3uk3_C 4 SRECSYCGKFF 14 (57)
T ss_dssp -CBCTTTCCBC
T ss_pred CccCCCCcchh
Confidence 45666666643
No 68
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=39 Score=23.38 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=25.3
Q ss_pred CCCCCCcccccccCCC---ceeee-cCccccCCcCC
Q 030770 107 KGPTRCLSCNKKVGLT---GFKCK-CGSTFCGIHRY 138 (171)
Q Consensus 107 ~~~~rC~~C~kk~gl~---gf~Cr-Cg~~fC~~HR~ 138 (171)
-...+|..|.+.+|++ |..|+ |...-|..-|.
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 3468999999999997 68884 98877776553
No 69
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.01 E-value=20 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=14.5
Q ss_pred CCCcccccccCCCceeeecCccccCC
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
-+|..|++.|....|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~ 57 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCET 57 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHH
Confidence 35667777665444544555555544
No 70
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.82 E-value=20 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=15.9
Q ss_pred CCCcccccccCCCceeeecCccccCCc
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGIH 136 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDC 62 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhH
Confidence 456677776654455555566666543
No 71
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.73 E-value=27 Score=18.11 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=8.6
Q ss_pred CCceee-ecCccccC
Q 030770 121 LTGFKC-KCGSTFCG 134 (171)
Q Consensus 121 l~gf~C-rCg~~fC~ 134 (171)
...|.| .||..|-.
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 7 GKPFKCSLCEYATRS 21 (36)
T ss_dssp CCSEECSSSSCEESC
T ss_pred CCCccCCCCCchhCC
Confidence 345777 47777654
No 72
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.67 E-value=27 Score=18.15 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=6.7
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4666 36666643
No 73
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=20 Score=23.93 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.3
Q ss_pred CCCCccccccc
Q 030770 109 PTRCLSCNKKV 119 (171)
Q Consensus 109 ~~rC~~C~kk~ 119 (171)
..+|..|++.+
T Consensus 25 ~~~C~~C~~~I 35 (89)
T 1x64_A 25 MPLCDKCGSGI 35 (89)
T ss_dssp CCBCTTTCCBC
T ss_pred CCCcccCCCEe
Confidence 34566666654
No 74
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.46 E-value=20 Score=17.31 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=7.0
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3667 37766643
No 75
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.27 E-value=20 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=8.2
Q ss_pred ceee-ecCccccCC
Q 030770 123 GFKC-KCGSTFCGI 135 (171)
Q Consensus 123 gf~C-rCg~~fC~~ 135 (171)
.|.| .||..|-..
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1paa_A 2 AYACGLCNRAFTRR 15 (30)
T ss_dssp CSBCTTTCCBCSSS
T ss_pred CcCCcccCcccCCh
Confidence 3667 477777653
No 76
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=25.21 E-value=25 Score=25.17 Aligned_cols=20 Identities=45% Similarity=0.961 Sum_probs=16.9
Q ss_pred ceeeecCccccCCcCCCCCC
Q 030770 123 GFKCKCGSTFCGIHRYPEKH 142 (171)
Q Consensus 123 gf~CrCg~~fC~~HR~~e~H 142 (171)
=|+|.|++..=+.+|||..|
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~ 67 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKH 67 (92)
T ss_dssp EEECTTSCEEEESSSSCCSC
T ss_pred EEECCCCCceeEeeeCCCCC
Confidence 38999999888889999854
No 77
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.08 E-value=50 Score=22.07 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=21.8
Q ss_pred CCCCCCCccccccc--CCCceee-ecCccccCC
Q 030770 106 AKGPTRCLSCNKKV--GLTGFKC-KCGSTFCGI 135 (171)
Q Consensus 106 k~~~~rC~~C~kk~--gl~gf~C-rCg~~fC~~ 135 (171)
+...++|..|.|.- .-.|-.| .|...||++
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaR 38 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCAR 38 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTT
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecc
Confidence 34578999998843 1147889 699999986
No 78
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=21 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=9.7
Q ss_pred CCcccccccCCCceeeecCcccc
Q 030770 111 RCLSCNKKVGLTGFKCKCGSTFC 133 (171)
Q Consensus 111 rC~~C~kk~gl~gf~CrCg~~fC 133 (171)
+|..|++.|....|.=+=|..||
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC 57 (72)
T 1x61_A 35 VCSTCRAQLRGQHFYAVERRAYC 57 (72)
T ss_dssp BCSSSCCBCTTSCEEESSSCEEE
T ss_pred cccccCCcCCcCcCEeeCCeEEC
Confidence 44455555433333333333444
No 79
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.88 E-value=29 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=6.4
Q ss_pred ceee-ecCcccc
Q 030770 123 GFKC-KCGSTFC 133 (171)
Q Consensus 123 gf~C-rCg~~fC 133 (171)
.|.| .||..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 4666 3666554
No 80
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.41 E-value=16 Score=17.56 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=8.6
Q ss_pred ceee-ecCccccCC
Q 030770 123 GFKC-KCGSTFCGI 135 (171)
Q Consensus 123 gf~C-rCg~~fC~~ 135 (171)
.|.| .||..|-..
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 3677 488777654
No 81
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.36 E-value=32 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.915 Sum_probs=23.3
Q ss_pred CCCCCcccccccCCC---ceee-ecCccccCC
Q 030770 108 GPTRCLSCNKKVGLT---GFKC-KCGSTFCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~---gf~C-rCg~~fC~~ 135 (171)
....|..|.+..|++ |..| .|...+|..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~ 85 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTK 85 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETT
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccc
Confidence 356899999999875 6799 599999986
No 82
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=24.26 E-value=18 Score=25.30 Aligned_cols=16 Identities=25% Similarity=0.577 Sum_probs=12.1
Q ss_pred CceeeecCccccCCcC
Q 030770 122 TGFKCKCGSTFCGIHR 137 (171)
Q Consensus 122 ~gf~CrCg~~fC~~HR 137 (171)
.-+.||||+.|--.-.
T Consensus 22 y~ypCrCGd~F~it~e 37 (83)
T 1yop_A 22 FTYPCPCGDRFQIYLD 37 (83)
T ss_dssp EEEEETTTEEEEEEHH
T ss_pred EEEeCCCCCeEEECHH
Confidence 4588999999965533
No 83
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.08 E-value=20 Score=17.49 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=7.7
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 4677 47777753
No 84
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.88 E-value=26 Score=22.48 Aligned_cols=24 Identities=29% Similarity=0.647 Sum_probs=19.1
Q ss_pred CCCCCcccccccCCCceeee-cCcc
Q 030770 108 GPTRCLSCNKKVGLTGFKCK-CGST 131 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~Cr-Cg~~ 131 (171)
....|..|+.+++.---.|| ||++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 45679999999877778995 9887
No 85
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.80 E-value=43 Score=21.56 Aligned_cols=24 Identities=33% Similarity=0.949 Sum_probs=17.6
Q ss_pred CCCCCcccccccC-C--Cceeee-cCcc
Q 030770 108 GPTRCLSCNKKVG-L--TGFKCK-CGST 131 (171)
Q Consensus 108 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.+- | -|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 4678999999873 2 379995 7655
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.79 E-value=28 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCCCCcccccccCCC---ceee-ecCccccCCcC
Q 030770 108 GPTRCLSCNKKVGLT---GFKC-KCGSTFCGIHR 137 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~---gf~C-rCg~~fC~~HR 137 (171)
....|..|.+.+|++ |..| .|...+|..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999998886 7899 59999998644
No 87
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=89 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=18.6
Q ss_pred CCCCcccccccCCCceeeecCccccCC
Q 030770 109 PTRCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
...|..|...+.. ...-.||.+||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (58)
T 2ecj_A 15 EASCSVCLEYLKE-PVIIECGHNFCKA 40 (58)
T ss_dssp CCBCSSSCCBCSS-CCCCSSCCCCCHH
T ss_pred CCCCccCCcccCc-cEeCCCCCccCHH
Confidence 4679999876533 3445799999965
No 88
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=23.45 E-value=43 Score=21.21 Aligned_cols=24 Identities=29% Similarity=1.038 Sum_probs=16.3
Q ss_pred CCCCCcccccccCCCceee-ecCcc-ccC
Q 030770 108 GPTRCLSCNKKVGLTGFKC-KCGST-FCG 134 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~C-rCg~~-fC~ 134 (171)
...+|..|++. .-..| +|..+ ||+
T Consensus 12 ~~~~C~~C~~~---~~~~Cs~C~~v~YCs 37 (60)
T 2od1_A 12 SSESCWNCGRK---ASETCSGCNTARYCG 37 (60)
T ss_dssp CSSCCTTTSSC---CCEECTTTSCCEESS
T ss_pred CCCccccCCCc---ccccCCCCCCeeecC
Confidence 35689999883 34777 67654 665
No 89
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.34 E-value=24 Score=16.99 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=8.4
Q ss_pred ceee-ecCccccCC
Q 030770 123 GFKC-KCGSTFCGI 135 (171)
Q Consensus 123 gf~C-rCg~~fC~~ 135 (171)
.|.| .||..|-..
T Consensus 3 ~~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 3 PYSCSVCGKRFSLK 16 (28)
T ss_dssp SEECSSSCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 4677 477777653
No 90
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.18 E-value=42 Score=21.74 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=19.8
Q ss_pred CCCcccccccCCCceeeecCccccCCcC
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGIHR 137 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~HR 137 (171)
-+|..|++.|....|.=+=|..||..|-
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHH
Confidence 4677888877666676666777887654
No 91
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.14 E-value=29 Score=17.63 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=8.0
Q ss_pred Cceee-ecCccccC
Q 030770 122 TGFKC-KCGSTFCG 134 (171)
Q Consensus 122 ~gf~C-rCg~~fC~ 134 (171)
..|.| .||..|-.
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 35777 37776654
No 92
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=25 Score=22.15 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=12.5
Q ss_pred CCcccccccCCCceeeecCccccCC
Q 030770 111 RCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 111 rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
+|..|++.|....|.=+=|..||..
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1x4k_A 35 ICHRCQQPIGTKSFIPKDNQNFCVP 59 (72)
T ss_dssp CCSSSCCCCCSSSEEEETTEEEEHH
T ss_pred cccccCCccCCCccCccCCeEECHH
Confidence 4556666554444444444455543
No 93
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.69 E-value=29 Score=16.51 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=6.9
Q ss_pred eee-ecCccccCC
Q 030770 124 FKC-KCGSTFCGI 135 (171)
Q Consensus 124 f~C-rCg~~fC~~ 135 (171)
|.| .||..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 566 366666543
No 94
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.56 E-value=23 Score=16.93 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=7.3
Q ss_pred ceee-ecCccccC
Q 030770 123 GFKC-KCGSTFCG 134 (171)
Q Consensus 123 gf~C-rCg~~fC~ 134 (171)
.|.| .||..|-.
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3667 37776653
No 95
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.52 E-value=73 Score=19.96 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCCCCcccccccCCCceeeecCccccCC--cC-CCCCCCCcccchHhhHHHH
Q 030770 108 GPTRCLSCNKKVGLTGFKCKCGSTFCGI--HR-YPEKHDCTFDFKVTGRDAI 156 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~CrCg~~fC~~--HR-~~e~H~C~~Dyk~~~r~~l 156 (171)
....|..|...+.. ...-.||.+||.. .+ +.....|.+--+...++.|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 35679999775532 3445799999975 22 3334567765555444443
No 96
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=22.50 E-value=21 Score=25.36 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.2
Q ss_pred CceeeecCccccC
Q 030770 122 TGFKCKCGSTFCG 134 (171)
Q Consensus 122 ~gf~CrCg~~fC~ 134 (171)
.-+.||||..|--
T Consensus 22 y~ypCrCGd~F~I 34 (89)
T 2jr7_A 22 YFYPCPCGDNFSI 34 (89)
T ss_dssp EEEECTTSSEEEE
T ss_pred EEEcCCCCCEEEE
Confidence 4688999999843
No 97
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.03 E-value=21 Score=22.86 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=3.9
Q ss_pred CCccccccc
Q 030770 111 RCLSCNKKV 119 (171)
Q Consensus 111 rC~~C~kk~ 119 (171)
+|..|++.+
T Consensus 13 ~C~~C~~~I 21 (77)
T 1g47_A 13 TCERCKGGF 21 (77)
T ss_dssp BCSSSCCBC
T ss_pred CchhcCCcc
Confidence 444444443
No 98
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.00 E-value=26 Score=16.90 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=8.1
Q ss_pred ceee-ecCccccCC
Q 030770 123 GFKC-KCGSTFCGI 135 (171)
Q Consensus 123 gf~C-rCg~~fC~~ 135 (171)
.|.| .||..|-..
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 1rik_A 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CEECSSSSCEESCS
T ss_pred CccCCCCCchhCCH
Confidence 3677 477777543
No 99
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.82 E-value=32 Score=17.84 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=7.6
Q ss_pred Cceee-ecCccccC
Q 030770 122 TGFKC-KCGSTFCG 134 (171)
Q Consensus 122 ~gf~C-rCg~~fC~ 134 (171)
..|.| .||..|-.
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elo_A 8 RSYSCPVCEKSFSE 21 (37)
T ss_dssp CCCEETTTTEECSS
T ss_pred CCcCCCCCCCccCC
Confidence 35677 37666643
No 100
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.68 E-value=26 Score=16.86 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=6.5
Q ss_pred eee-ecCccccC
Q 030770 124 FKC-KCGSTFCG 134 (171)
Q Consensus 124 f~C-rCg~~fC~ 134 (171)
|.| .||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 566 36666654
No 101
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.49 E-value=22 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=19.0
Q ss_pred CCcccccccCC--C-ceee-ecCccccCCcCCC
Q 030770 111 RCLSCNKKVGL--T-GFKC-KCGSTFCGIHRYP 139 (171)
Q Consensus 111 rC~~C~kk~gl--~-gf~C-rCg~~fC~~HR~~ 139 (171)
-|..|+|||-. . .+.| +|+..==-.|||.
T Consensus 44 ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RYi 76 (172)
T 3u50_C 44 RCTCQGKSVLKYHGDSFFCESCQQFINPQVHLM 76 (172)
T ss_dssp ECTTSCCCEEEETTTEEEETTTTEECCCEEEEC
T ss_pred hchhhCCEeeeCCCCeEECCCCCCCCCceEEEE
Confidence 46679999952 2 3889 7887712227763
No 102
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=21.17 E-value=43 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.809 Sum_probs=15.8
Q ss_pred CCCCCcccccccCCCceee-ecCcc-ccCC
Q 030770 108 GPTRCLSCNKKVGLTGFKC-KCGST-FCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~C-rCg~~-fC~~ 135 (171)
....|..|++. ....| +|..+ ||+.
T Consensus 8 ~~~~C~~C~~~---~~~~C~~C~~~~YCs~ 34 (52)
T 2jw6_A 8 KEQSCVNCGRE---AMSECTGCHKVNYCST 34 (52)
T ss_dssp ---CCSSSSSS---CSEECTTTCSSEESSH
T ss_pred cCCcCCCCCCC---CcCcCCCCCCEeecCH
Confidence 35689999884 35778 67664 7763
No 103
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.13 E-value=46 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCCCcccccccCCCceee-ecCccccCC--cCCCCCCCCcc
Q 030770 109 PTRCLSCNKKVGLTGFKC-KCGSTFCGI--HRYPEKHDCTF 146 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~C-rCg~~fC~~--HR~~e~H~C~~ 146 (171)
...|..|..-+. ....- .||.+||.. .++.. ..|..
T Consensus 22 ~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 22 LLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIG-TGCPV 60 (117)
T ss_dssp TTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTT-TBCSS
T ss_pred CCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhc-CCCcC
Confidence 357888876443 24444 799999976 33333 55654
No 104
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.08 E-value=44 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=18.7
Q ss_pred CCCCCcccccccCC--------------Cceee-ecCccccCC
Q 030770 108 GPTRCLSCNKKVGL--------------TGFKC-KCGSTFCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl--------------~gf~C-rCg~~fC~~ 135 (171)
.+-.|..|+|.... -.|.| .||..|-..
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 35678888875432 15889 588888643
No 105
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=20.97 E-value=76 Score=20.16 Aligned_cols=26 Identities=23% Similarity=0.675 Sum_probs=18.9
Q ss_pred CCCCcccccccCCCceeee-cCccccCC
Q 030770 109 PTRCLSCNKKVGLTGFKCK-CGSTFCGI 135 (171)
Q Consensus 109 ~~rC~~C~kk~gl~gf~Cr-Cg~~fC~~ 135 (171)
...|..|...+. ....-. ||.+||..
T Consensus 15 ~~~C~IC~~~~~-~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 15 ELLCLICKDIMT-DAVVIPCCGNSYCDE 41 (74)
T ss_dssp GGSCSSSCCCCT-TCEECSSSCCEECTT
T ss_pred CCCCcCCChHHh-CCeEcCCCCCHHHHH
Confidence 457999976442 356666 99999986
No 106
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.92 E-value=27 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=7.5
Q ss_pred CCCCCccccccc
Q 030770 108 GPTRCLSCNKKV 119 (171)
Q Consensus 108 ~~~rC~~C~kk~ 119 (171)
.+..|..|.+..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 456677776643
No 107
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.86 E-value=24 Score=23.37 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=9.4
Q ss_pred CCCCCcccccccC
Q 030770 108 GPTRCLSCNKKVG 120 (171)
Q Consensus 108 ~~~rC~~C~kk~g 120 (171)
.+..|..|.+...
T Consensus 23 ~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 23 GEAVCPTCNVVTR 35 (98)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CCcCCCCCCCChh
Confidence 4577888887665
No 108
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.77 E-value=71 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=17.8
Q ss_pred CCCCCcccccccCCCceeee-cCccc
Q 030770 108 GPTRCLSCNKKVGLTGFKCK-CGSTF 132 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~Cr-Cg~~f 132 (171)
....|..|..-..-.-|.|| |+.+|
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 44578888765544568898 88887
No 109
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.64 E-value=43 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=13.6
Q ss_pred CCCcccccccCCCceeeecCccccC
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCG 134 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~ 134 (171)
-+|..|++.|....|.=+=|..||.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~ 61 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCH 61 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECT
T ss_pred CCCCCCCCccCCCceEeECCEEecc
Confidence 3556666666544454444555554
No 110
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=20.60 E-value=19 Score=31.07 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=21.4
Q ss_pred CCCcccccccCCCceee-ecCccccCCcCCCCCC
Q 030770 110 TRCLSCNKKVGLTGFKC-KCGSTFCGIHRYPEKH 142 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~C-rCg~~fC~~HR~~e~H 142 (171)
.+|..|...-..--+.| .||.+.|+.+++.-.|
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~~~h~~~H 82 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSH 82 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCEEETTTTHHHHH
T ss_pred CCcccccCCCCCCceEeCCCCCCccCCchHHHHH
Confidence 46998965421234889 7999999764443333
No 111
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=28 Score=21.88 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=13.9
Q ss_pred CCCcccccccCCCceeeecCccccCC
Q 030770 110 TRCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 110 ~rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
-+|..|++.|....|.=+=|..||..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVP 59 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHH
Confidence 35566666665544544444555543
No 112
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.49 E-value=35 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.605 Sum_probs=7.7
Q ss_pred Cceee-ecCccccC
Q 030770 122 TGFKC-KCGSTFCG 134 (171)
Q Consensus 122 ~gf~C-rCg~~fC~ 134 (171)
..|.| .||..|-.
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 35777 37666643
No 113
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.46 E-value=30 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=11.4
Q ss_pred CCcccccccCCCceeeecCccccC
Q 030770 111 RCLSCNKKVGLTGFKCKCGSTFCG 134 (171)
Q Consensus 111 rC~~C~kk~gl~gf~CrCg~~fC~ 134 (171)
+|..|++.|....|.=+=|..||.
T Consensus 33 ~C~~C~~~L~~~~~~~~~~~~yC~ 56 (70)
T 2d8z_A 33 VCTACRKQLSGQRFTARDDFAYCL 56 (70)
T ss_dssp BCSSSCCBCTTSCCEESSSSEECH
T ss_pred ccCCCCCcCCcCceEeeCCeEECH
Confidence 455666655443443333344443
No 114
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=88 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=19.1
Q ss_pred CCCCCcccccccCCCceeeecCccccCC
Q 030770 108 GPTRCLSCNKKVGLTGFKCKCGSTFCGI 135 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~gf~CrCg~~fC~~ 135 (171)
....|..|...+.. ...-.||.+||..
T Consensus 19 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 19 EEVICPICLDILQK-PVTIDCGHNFCLK 45 (73)
T ss_dssp CCCBCTTTCSBCSS-EEECTTCCEEEHH
T ss_pred cCCEeccCCcccCC-eEEcCCCChhhHH
Confidence 34689999875532 3444899999976
No 115
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=20.30 E-value=22 Score=24.82 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCCCCcccccccCCC-----ceeee-cCccccCCcCC---CCCCCCcccc
Q 030770 108 GPTRCLSCNKKVGLT-----GFKCK-CGSTFCGIHRY---PEKHDCTFDF 148 (171)
Q Consensus 108 ~~~rC~~C~kk~gl~-----gf~Cr-Cg~~fC~~HR~---~e~H~C~~Dy 148 (171)
.+..|..|++.+-.+ |++|+ |+.+.=..+.. .--..|..+|
T Consensus 34 ~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~ 83 (84)
T 2row_A 34 FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY 83 (84)
T ss_dssp SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence 467899999877543 89996 76654333333 2234555444
No 116
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.28 E-value=26 Score=24.50 Aligned_cols=15 Identities=27% Similarity=0.633 Sum_probs=11.0
Q ss_pred CCceeeecCccccCC
Q 030770 121 LTGFKCKCGSTFCGI 135 (171)
Q Consensus 121 l~gf~CrCg~~fC~~ 135 (171)
..-+.||||..|--.
T Consensus 28 ~y~y~CrCGd~F~it 42 (83)
T 1wge_A 28 TYFYPCPCGDNFAIT 42 (83)
T ss_dssp EEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCEEEEC
Confidence 346889999998543
No 117
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.28 E-value=37 Score=17.36 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=7.9
Q ss_pred Cceee-ecCccccC
Q 030770 122 TGFKC-KCGSTFCG 134 (171)
Q Consensus 122 ~gf~C-rCg~~fC~ 134 (171)
..|.| .||..|-.
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 35777 47776654
No 118
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.66 E-value=22 Score=17.38 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=8.4
Q ss_pred ceee-ecCccccCC
Q 030770 123 GFKC-KCGSTFCGI 135 (171)
Q Consensus 123 gf~C-rCg~~fC~~ 135 (171)
.|.| .||..|-..
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA 15 (29)
Confidence 3677 488777654
No 119
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.15 E-value=28 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=10.2
Q ss_pred CCcccccccCCCceeeecCccccC
Q 030770 111 RCLSCNKKVGLTGFKCKCGSTFCG 134 (171)
Q Consensus 111 rC~~C~kk~gl~gf~CrCg~~fC~ 134 (171)
+|..|++.|....|.=+=|..||.
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~ 59 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCK 59 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECS
T ss_pred ccCCCCCCCCCCCeEeeCCEEECH
Confidence 344555544433333333344443
Done!