Query 030771
Match_columns 171
No_of_seqs 147 out of 977
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_R 60S ribosomal protein L 100.0 1.6E-51 5.6E-56 337.0 14.9 144 1-144 1-145 (188)
2 4a17_N RPL18, 60S ribosomal pr 100.0 3.2E-51 1.1E-55 333.6 11.2 142 1-142 1-144 (181)
3 3izc_R 60S ribosomal protein R 100.0 7.8E-51 2.7E-55 332.5 11.8 144 1-144 1-146 (186)
4 2zkr_o 60S ribosomal protein L 100.0 9.4E-50 3.2E-54 326.8 14.5 143 1-144 1-145 (188)
5 3jyw_O 60S ribosomal protein L 100.0 1.6E-44 5.4E-49 278.2 8.2 119 21-139 1-121 (121)
6 3j21_P 50S ribosomal protein L 100.0 3.7E-43 1.3E-47 269.8 12.3 120 16-139 1-120 (120)
7 1vq8_O 50S ribosomal protein L 100.0 1.6E-38 5.6E-43 242.6 14.6 115 20-139 2-116 (116)
8 3r8s_L 50S ribosomal protein L 99.7 5.2E-19 1.8E-23 139.3 0.2 75 40-120 52-142 (143)
9 3v2d_P 50S ribosomal protein L 99.6 1.5E-17 5E-22 132.0 -0.4 79 40-122 54-148 (150)
10 2zjr_I 50S ribosomal protein L 99.6 8.8E-18 3E-22 133.7 -3.5 80 41-122 53-143 (156)
11 3j21_L 50S ribosomal protein L 99.6 1.3E-15 4.4E-20 120.2 5.6 73 47-121 57-146 (147)
12 1vq8_L 50S ribosomal protein L 99.6 3.4E-16 1.2E-20 125.4 2.0 78 43-123 43-145 (165)
13 2zkr_l 60S ribosomal protein L 99.5 1.6E-15 5.6E-20 119.2 2.4 80 41-122 38-147 (148)
14 3bbo_N Ribosomal protein L15; 99.5 1.3E-16 4.4E-21 135.9 -8.9 81 40-122 117-220 (257)
15 4a17_K L29, RPL27A, 60S riboso 99.4 2.7E-13 9.1E-18 107.2 3.9 74 47-122 54-148 (149)
16 3o58_Y 60S ribosomal protein L 99.1 5.9E-12 2E-16 99.7 0.9 61 59-121 70-147 (149)
17 3iz5_O 60S ribosomal protein L 98.9 5E-12 1.7E-16 99.7 -7.7 71 49-121 54-142 (144)
18 3g2s_A C-terminal fragment of 27.2 16 0.00053 27.9 0.4 40 16-55 54-94 (149)
19 3ldz_A STAM-1, signal transduc 22.8 26 0.00088 26.1 0.9 39 17-55 49-88 (140)
20 3s1b_A Mini-Z; VEGF, cystine k 22.7 60 0.0021 19.0 2.3 19 32-50 8-26 (34)
21 1mhq_A ADP-ribosylation factor 21.2 24 0.00082 26.7 0.4 40 16-55 44-84 (148)
No 1
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=100.00 E-value=1.6e-51 Score=336.97 Aligned_cols=144 Identities=76% Similarity=1.143 Sum_probs=139.2
Q ss_pred CceeeccCCccccCCCCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCC-CcEE
Q 030771 1 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKE-DKIA 79 (171)
Q Consensus 1 mg~~~~~~~~~~~~~rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e-~k~v 79 (171)
|||||.|+++++++.|+.|+||||||++||++|+++||+|++|||++||||||+|+++|+||||++|++++++.| ++++
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Liklyr~larrt~apf~r~V~KRLf~sr~~r~pVnLsrL~r~~k~~e~gk~V 80 (188)
T 3iz5_R 1 MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNIA 80 (188)
T ss_dssp CCSHHHHHHTSCCCCCCCSCCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHSCTTTCCEEEHHHHHTTSCSSSTTCEE
T ss_pred CccccccccccccccCCCCCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCEE
Confidence 999999988999999999999999999999999999999999999999999999999999999999999998544 8899
Q ss_pred EEEeeecCCceeecccCeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEeecCCCc
Q 030771 80 VVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYC 144 (171)
Q Consensus 80 vv~~KVLg~G~lt~v~kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~g~~~~ 144 (171)
|+++||||||+|+++|+++|+|++||++|+++||+|||+|+++|||+++||+|+||+||+||+-+
T Consensus 81 Vv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~~~ 145 (188)
T 3iz5_R 81 VVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPTGENTILLRGPKNA 145 (188)
T ss_dssp EEEEEEECCCCSSCCSSEEEEEEECCHHHHHHHHTTSEEEEEHHHHHHHCTTCCSEEECCCCSSS
T ss_pred EEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEHHHHHHhCCCCCceEEEecCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999854
No 2
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=100.00 E-value=3.2e-51 Score=333.64 Aligned_cols=142 Identities=54% Similarity=0.777 Sum_probs=134.8
Q ss_pred CceeeccCC-ccccCCCCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCC-CcE
Q 030771 1 MGIDLVAGG-KSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKE-DKI 78 (171)
Q Consensus 1 mg~~~~~~~-~~~~~~rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e-~k~ 78 (171)
|||||..++ +++++.|+.|+||||||++||++|+++||+|++|||++||||||+|+++|+||||++|++++++.| +++
T Consensus 1 mgid~~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~~~e~gk~ 80 (181)
T 4a17_N 1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLNETNKEQV 80 (181)
T ss_dssp -CBCCGGGGCCCCCSSCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCCHHHHHSE
T ss_pred CccccccccccccccccCCCCCCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE
Confidence 999998544 489999999999999999999999999999999999999999999999999999999999998434 789
Q ss_pred EEEEeeecCCceeecccCeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEeecCC
Q 030771 79 AVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNAN 142 (171)
Q Consensus 79 vvv~~KVLg~G~lt~v~kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~g~~ 142 (171)
+++++||||||+|+++|+++|+|++||++|+++||+|||+|+++|||+++||+|+||+||+||+
T Consensus 81 vVv~gKVLg~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~ 144 (181)
T 4a17_N 81 IVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKCLTFDQLALKAPTGTNCFLLRAPK 144 (181)
T ss_dssp EEESSEEECCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECHHHHHHHCTTCTTEEEECCCC
T ss_pred EEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEhHHHHHhCCCCCCeEEeeCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 3
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=100.00 E-value=7.8e-51 Score=332.52 Aligned_cols=144 Identities=58% Similarity=0.907 Sum_probs=137.8
Q ss_pred CceeeccCCccccCCCCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccC--CCcE
Q 030771 1 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGK--EDKI 78 (171)
Q Consensus 1 mg~~~~~~~~~~~~~rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~--e~k~ 78 (171)
|||||..+++++++.|+.|+||||||++||++|+++||+|++|||++||||||+|+++|+||||++|++++++. ++++
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~~r~~VnLsrI~r~~k~~g~~g~~ 80 (186)
T 3izc_R 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 80 (186)
T ss_dssp CCSSHHHHHHSCCCCCCCSCCSSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHSCTTTCCEEEHHHHHHHTTTTSSSSCE
T ss_pred CcccccccccccccCCCCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHhCCCcccCcccHHHHHHHhhccCCCCCE
Confidence 99999544889999999999999999999999999999999999999999999999999999999999999854 6889
Q ss_pred EEEEeeecCCceeecccCeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEeecCCCc
Q 030771 79 AVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYC 144 (171)
Q Consensus 79 vvv~~KVLg~G~lt~v~kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~g~~~~ 144 (171)
+++++||||||+|+++++++|+|++||++|+++||+|||+|+++|||+++||+|+||+||+||+-+
T Consensus 81 vVv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~~~ 146 (186)
T 3izc_R 81 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNS 146 (186)
T ss_dssp EEESSEEECCCCSSCCCCEEEEESCCCHHHHHHHHHHSEECCCSHHHHHHSTTTCSEEECCCCSSS
T ss_pred EEEEeEEecCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeccCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999854
No 4
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.4e-50 Score=326.78 Aligned_cols=143 Identities=62% Similarity=0.949 Sum_probs=113.0
Q ss_pred CceeeccCCccccCCCCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhh--ccCCCcE
Q 030771 1 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFM--KGKEDKI 78 (171)
Q Consensus 1 mg~~~~~~~~~~~~~rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~--~~~e~k~ 78 (171)
|||||.| ++++++.|++|+||||||++||++|+++||+|++|||++||||||+|+++|++|||++|++++ ++.++++
T Consensus 1 mg~d~~~-~~~~~~~r~~~~s~n~~l~~Lvk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~i 79 (188)
T 2zkr_o 1 MGVDIRH-NKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT 79 (188)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSE
T ss_pred Cceeeec-CcccccccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcE
Confidence 9999999 558999999999999999999999999999999999999999999999999999999999876 3346678
Q ss_pred EEEEeeecCCceeecccCeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEeecCCCc
Q 030771 79 AVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYC 144 (171)
Q Consensus 79 vvv~~KVLg~G~lt~v~kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~g~~~~ 144 (171)
+++++||||||+|++||+++|+|++||++|+|+||+|||+|+++|||+++||+|+||+||+||+-+
T Consensus 80 iv~~~KVLg~GeL~kvpkLtV~A~~fSksArekIEaAGG~v~~idqla~~~P~G~n~~ll~g~~~~ 145 (188)
T 2zkr_o 80 AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKG 145 (188)
T ss_dssp EEEEEEEECSSCCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEHHHHHHHCTTCCSEEEEC-----
T ss_pred EEeecEEECCceecccCCeEEEEeecCHHHHHHHHHcCCEEEEhHHHHHHCCCCCceEEEecCcch
Confidence 888999999999998889999999999999999999999999999999999999999999999854
No 5
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=100.00 E-value=1.6e-44 Score=278.19 Aligned_cols=119 Identities=63% Similarity=0.977 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhcc--CCCcEEEEEeeecCCceeecccCeE
Q 030771 21 SDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALK 98 (171)
Q Consensus 21 stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~--~e~k~vvv~~KVLg~G~lt~v~kl~ 98 (171)
||||||++|+++|+++||+|++||||+||||||+|+++|++|||++|++++++ .+++++++++||||||+++++++++
T Consensus 1 s~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~~vvv~~KVlg~G~l~~~~kl~ 80 (121)
T 3jyw_O 1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT 80 (121)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSSEEEESSCBCCCSCCCSSSCCC
T ss_pred CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCCEEEEEEEEcCCceEcccCCEE
Confidence 79999999999999999999999999999999999999999999999999873 3677888999999999999999999
Q ss_pred EEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEee
Q 030771 99 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVF 139 (171)
Q Consensus 99 V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~ 139 (171)
|+|++||++|++|||+|||+|+++|||+++||+|+||+||+
T Consensus 81 V~a~~fS~~A~~kIe~AGG~~~~~dql~~~~P~G~~~~llr 121 (121)
T 3jyw_O 81 VAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR 121 (121)
T ss_dssp EECSSBCTTTTTHHHHHTCCBCCSTTHHHHCTTCSSEEEEC
T ss_pred EEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeC
Confidence 99999999999999999999999999999999999999985
No 6
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-43 Score=269.84 Aligned_cols=120 Identities=24% Similarity=0.333 Sum_probs=114.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCCCcEEEEEeeecCCceeeccc
Q 030771 16 RTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVP 95 (171)
Q Consensus 16 rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e~k~vvv~~KVLg~G~lt~v~ 95 (171)
|++++||||||++||++|+++||+|++|||+|+|||||+|+++|++|||++|+++++ +++++++++||||+|+++ +
T Consensus 1 ~~~~~~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~--~g~~i~~~vKVLg~G~l~--~ 76 (120)
T 3j21_P 1 MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYAN--DGEMIVVPGSVLGAGKLE--K 76 (120)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSC--TTCEEEEEEEEECSSCCC--S
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHh--cCCEEEEEEEEcCCCeec--C
Confidence 456789999999999999999999999999999999999999999999999999886 677888899999999999 9
Q ss_pred CeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEee
Q 030771 96 ALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVF 139 (171)
Q Consensus 96 kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~ 139 (171)
+++|+|++||++|+++||+|||+|+++|||+++||+|+||+||+
T Consensus 77 kl~V~a~~fS~~A~ekIe~AGG~v~~~~qL~~~~p~g~~~~l~~ 120 (120)
T 3j21_P 77 KVIVAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME 120 (120)
T ss_dssp CCEEEEEEECHHHHHHHTTTSSCEEESTTHHHHCSSCSSEEECC
T ss_pred CEEEEEeccCHHHHHHHHHcCCEEEEeHHHHHHCCCCCCeEEeC
Confidence 99999999999999999999999999999999999999999974
No 7
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=100.00 E-value=1.6e-38 Score=242.63 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCCCcEEEEEeeecCCceeecccCeEE
Q 030771 20 KSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKV 99 (171)
Q Consensus 20 ~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e~k~vvv~~KVLg~G~lt~v~kl~V 99 (171)
.||||||++||++|+++||+|++|||||+||||++++++|++|||++|+++++ +++++++++||||+|+++ ++++|
T Consensus 2 ~~~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~--~g~~ilv~vKVLg~G~l~--k~l~V 77 (116)
T 1vq8_O 2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ--EDETVVVPGKVLGSGVLQ--KDVTV 77 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCC--TTSEEEEEEEEECCSCCC--SCCEE
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHcc--CCCEEEEEEEEeeCCeec--CCEEE
Confidence 48999999999999999999999999999999988899999999999998876 556667799999999999 99999
Q ss_pred EEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEee
Q 030771 100 TALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVF 139 (171)
Q Consensus 100 ~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~ 139 (171)
+|++||++|+|+||+| |+|+++|||+++||+|+||+||.
T Consensus 78 ~a~~fSk~A~ekIeaA-G~v~~~~~l~~~~p~g~~~~l~~ 116 (116)
T 1vq8_O 78 AAVDFSGTAETKIDQV-GEAVSLEQAIENNPEGSHVRVIR 116 (116)
T ss_dssp EEEEECHHHHHHHHHH-SEEEEHHHHHHHCTTCCSEEECC
T ss_pred EEEecCHHHHHHHHHc-CeEEEhHHHHHHCCCCCCeEEeC
Confidence 9999999999999999 99999999999999999999974
No 8
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.72 E-value=5.2e-19 Score=139.29 Aligned_cols=75 Identities=25% Similarity=0.236 Sum_probs=65.6
Q ss_pred cCChHHHHHHHhhhcC--CCCCCccchHHHHhhhccCCCcEE--------------EEEeeecCCceeecccCeEEEEEe
Q 030771 40 TDSNFNKVILKRLFMS--KVNKPPLSLSRLINFMKGKEDKIA--------------VVVGTVTDDIRAYEVPALKVTALR 103 (171)
Q Consensus 40 t~~pl~rrI~KRlf~~--r~~~~~VNLs~L~~~~~~~e~k~v--------------vv~~KVLg~G~lt~v~kl~V~A~k 103 (171)
-.+|||+|+|||+|+| ++.|.+|||++|+++.. +.+ ..++||||+|+++ .+++|.|++
T Consensus 52 GQ~Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~~----~~I~~~~L~~~glv~~~~~~VKVLg~Gel~--~~l~V~a~~ 125 (143)
T 3r8s_L 52 GQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEG----GVVDLNTLKAANIIGIQIEFAKVILAGEVT--TPVTVRGLR 125 (143)
T ss_dssp TSCCHHHHSCCCCCCCSTGGGEEECCSSSSSCSSS----SEEEHHHHGGGTSSCTTCCEEECCCCSCCC--SCCEEESSC
T ss_pred CCCccEEEccccccCCcccceeEEEEHHHhhhccC----CeecHHHHHHcCccccCCCceEEeeCCccc--ccEEEEEEe
Confidence 4579999999999997 57899999999987632 222 1379999999999 999999999
Q ss_pred cCHHHHHHHHHhCCEEE
Q 030771 104 FTETARARIEKAGGECL 120 (171)
Q Consensus 104 fS~sAreKIekAGGkv~ 120 (171)
||++|+++||+|||+|.
T Consensus 126 ~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 126 VTKGARAAIEAAGGKIE 142 (143)
T ss_dssp CCHHHHHHHHTTTCEEE
T ss_pred cCHHHHHHHHHcCCEEe
Confidence 99999999999999985
No 9
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.63 E-value=1.5e-17 Score=132.00 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=65.2
Q ss_pred cCChHHHHHHHhhhcC-------CCCCCccchHHHHhhhccC-------CCcEE--EEEeeecCCceeecccCeEEEEEe
Q 030771 40 TDSNFNKVILKRLFMS-------KVNKPPLSLSRLINFMKGK-------EDKIA--VVVGTVTDDIRAYEVPALKVTALR 103 (171)
Q Consensus 40 t~~pl~rrI~KRlf~~-------r~~~~~VNLs~L~~~~~~~-------e~k~v--vv~~KVLg~G~lt~v~kl~V~A~k 103 (171)
-.+|||+|+|||+|.| +++|.+|||++|++ +++. +...+ .+++||||+|+++ +++|.|++
T Consensus 54 GQ~Pl~rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~G~I~~~~L~~~glv~~~~~VKvLg~G~l~---~v~V~a~~ 129 (150)
T 3v2d_P 54 GRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FEGEVTPELLVRAGLLKKGYRLKILGEGEAK---PLKVVAHA 129 (150)
T ss_dssp TSCCTTTTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CCSEECHHHHHTTTSSCTTCEEEEECSSCCC---SCEECBSC
T ss_pred CCCccEEEcCccCccCccccccccceEEEEEHHHHhh-cCCcccHHHHHHCCCcccccceEEEecCCcc---cEEEEEEE
Confidence 4579999999999998 57899999999998 4310 00000 1379999999987 99999999
Q ss_pred cCHHHHHHHHHhCCEEEeH
Q 030771 104 FTETARARIEKAGGECLTF 122 (171)
Q Consensus 104 fS~sAreKIekAGGkv~~l 122 (171)
||++|+++||+|||+|+.+
T Consensus 130 ~S~~A~~kIe~aGG~v~~~ 148 (150)
T 3v2d_P 130 FSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp BCHHHHHHHHHTTCBCCBC
T ss_pred cCHHHHHHHHHcCCEEEEe
Confidence 9999999999999999765
No 10
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.62 E-value=8.8e-18 Score=133.69 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=66.8
Q ss_pred CChHHHHHHHhhhcC-CCCCCccchHHHHhhhccC-CCcEE---------EEEeeecCCceeecccCeEEEEEecCHHHH
Q 030771 41 DSNFNKVILKRLFMS-KVNKPPLSLSRLINFMKGK-EDKIA---------VVVGTVTDDIRAYEVPALKVTALRFTETAR 109 (171)
Q Consensus 41 ~~pl~rrI~KRlf~~-r~~~~~VNLs~L~~~~~~~-e~k~v---------vv~~KVLg~G~lt~v~kl~V~A~kfS~sAr 109 (171)
.+|+|||+|||+|++ +..|++|||++|+++.++. +-+.+ ..++||||+|+++ .+++|.|++||++|+
T Consensus 53 Q~Pl~rrlPK~GF~n~~~~~~~VNL~~L~~l~~~~i~~~~L~~~gli~~~~~~vKVLG~G~l~--~~l~Vka~~fSk~A~ 130 (156)
T 2zjr_I 53 RSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEIS--RAVTVHVDAASAAAI 130 (156)
T ss_dssp SSSSTTTSCCCCCCCCCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCCCCSSCCEECCCCCCC--CCCCCCCSEECHHHH
T ss_pred cCCCeEecCCCCCcCCceEEEeechhHHHhhhcCCcCHHHHHhCCcEeccccceEEeeCCccC--cCeEEEEEecCHHHH
Confidence 789999999999997 6779999999999875421 00011 1368999999999 999999999999999
Q ss_pred HHHHHhCCEEEeH
Q 030771 110 ARIEKAGGECLTF 122 (171)
Q Consensus 110 eKIekAGGkv~~l 122 (171)
|+||+|||+|+.+
T Consensus 131 ekIEaAGG~v~~i 143 (156)
T 2zjr_I 131 KAVEAAGGRVVLP 143 (156)
T ss_dssp HHHGGGSCCCCCC
T ss_pred HHHHHcCCEEEEe
Confidence 9999999999653
No 11
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.58 E-value=1.3e-15 Score=120.21 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=61.4
Q ss_pred HHHHhhhcC----CCCCCccchHHHHhhhcc--------CCCcEEEEE-----eeecCCceeecccCeEEEEEecCHHHH
Q 030771 47 VILKRLFMS----KVNKPPLSLSRLINFMKG--------KEDKIAVVV-----GTVTDDIRAYEVPALKVTALRFTETAR 109 (171)
Q Consensus 47 rI~KRlf~~----r~~~~~VNLs~L~~~~~~--------~e~k~vvv~-----~KVLg~G~lt~v~kl~V~A~kfS~sAr 109 (171)
++|||+|++ +++|++|||++|+++.+. .+++..++. +||||+|+|+ .+++|.|..||++|+
T Consensus 57 ~~pK~GF~n~~~~~~~~~~VNL~~L~~l~~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~--~~v~Vka~~fS~~A~ 134 (147)
T 3j21_L 57 HLGKRGFSRPPEVQREVRVVNLKFIDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLT--RPLVIKARAFSPKAE 134 (147)
T ss_dssp CSCCCSCCCCTTTCCCCCEEEHHHHHHTTTTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCS--SCEEEEESEECHHHH
T ss_pred cCCcCCCCccccccceeEEEEHHHHHHHHHHHHHcCcccccCCcceecccccCcEEecCCccC--cCEEEEEEecCHHHH
Confidence 679999986 468999999999987642 123333444 8999999999 999999999999999
Q ss_pred HHHHHhCCEEEe
Q 030771 110 ARIEKAGGECLT 121 (171)
Q Consensus 110 eKIekAGGkv~~ 121 (171)
||||+|||+|+.
T Consensus 135 ekIeaaGG~v~~ 146 (147)
T 3j21_L 135 EKIKAAGGEAVL 146 (147)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHcCCEEEe
Confidence 999999999975
No 12
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.58 E-value=3.4e-16 Score=125.43 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=64.2
Q ss_pred hHHHHHHHhhhcC----CCCCCccchHHHHhhhc-----cC---CCc-EEE------------EEeeecCCceeecccCe
Q 030771 43 NFNKVILKRLFMS----KVNKPPLSLSRLINFMK-----GK---EDK-IAV------------VVGTVTDDIRAYEVPAL 97 (171)
Q Consensus 43 pl~rrI~KRlf~~----r~~~~~VNLs~L~~~~~-----~~---e~k-~vv------------v~~KVLg~G~lt~v~kl 97 (171)
||++ +|||+|++ +..|++|||++|+++.. +. +++ .++ ..+||||+|+|+ +++
T Consensus 43 pl~k-lPK~GF~~~~~~r~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~~~vKVLG~G~l~--k~l 119 (165)
T 1vq8_L 43 NHEP-LGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVR--HEL 119 (165)
T ss_dssp TSCC-SCCCCCCCCGGGCCCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCC--SCC
T ss_pred eeeE-CCCCCCccCCcccceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccCCceEEecCCccC--CCE
Confidence 8888 99999998 26799999999998752 00 222 122 368999999999 999
Q ss_pred EEEEEecCHHHHHHHHHhCCEEEeHH
Q 030771 98 KVTALRFTETARARIEKAGGECLTFD 123 (171)
Q Consensus 98 ~V~A~kfS~sAreKIekAGGkv~~ld 123 (171)
+|.|..||++|+++||+|||+|+++.
T Consensus 120 ~Vka~~fSk~A~ekIeaAGG~v~~i~ 145 (165)
T 1vq8_L 120 TLIADDFSEGAREKVEGAGGSVELTD 145 (165)
T ss_dssp EEEESEECHHHHHHHHHTTCEEEECT
T ss_pred EEEEEecCHHHHHHHHHcCCEEEEee
Confidence 99999999999999999999998763
No 13
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.53 E-value=1.6e-15 Score=119.18 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=54.1
Q ss_pred CChHHHH--------HHHhhhcCC----C-CC-CccchHHHHhhhccCC----Cc-E-----EE-----EEeeecCCcee
Q 030771 41 DSNFNKV--------ILKRLFMSK----V-NK-PPLSLSRLINFMKGKE----DK-I-----AV-----VVGTVTDDIRA 91 (171)
Q Consensus 41 ~~pl~rr--------I~KRlf~~r----~-~~-~~VNLs~L~~~~~~~e----~k-~-----vv-----v~~KVLg~G~l 91 (171)
..|+|++ +|||+|+|. . .| ++|||++|+++.++.. .. . ++ .++||||+|+|
T Consensus 38 q~h~~~~~~k~~p~~lpK~GF~~~~~~~~~~~~~~VNl~~L~~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel 117 (148)
T 2zkr_l 38 MHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKL 117 (148)
T ss_dssp TTTTCSSCTTTC------------------CCCCEEETHHHHHHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCC
T ss_pred CCCCEEeccccCCCcCCCCCcCCCCccccceecceEEHHHHHhhhhcCcEEehhhhccccCCeEeccccCceEEecCCcc
Confidence 4456666 999999983 1 34 8999999998754321 00 1 01 14899999999
Q ss_pred eccc-CeEEEEEecCHHHHHHHHHhCCEEEeH
Q 030771 92 YEVP-ALKVTALRFTETARARIEKAGGECLTF 122 (171)
Q Consensus 92 t~v~-kl~V~A~kfS~sAreKIekAGGkv~~l 122 (171)
+ + +++|.|.+||++|+|+||+|||+|+.+
T Consensus 118 ~--k~~l~Vka~~fSk~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 118 P--KQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp C--SSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred c--cCCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence 9 8 999999999999999999999999764
No 14
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.47 E-value=1.3e-16 Score=135.93 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=66.7
Q ss_pred cCChHHHHHHH-hhhcC-----CCCCCccchHHHHhh-hccC---------CCcEE-------EEEeeecCCceeecccC
Q 030771 40 TDSNFNKVILK-RLFMS-----KVNKPPLSLSRLINF-MKGK---------EDKIA-------VVVGTVTDDIRAYEVPA 96 (171)
Q Consensus 40 t~~pl~rrI~K-Rlf~~-----r~~~~~VNLs~L~~~-~~~~---------e~k~v-------vv~~KVLg~G~lt~v~k 96 (171)
-.+|+|||+|| |||++ +++|.+|||++|+++ +++. +..++ ...+||||+|+++ .+
T Consensus 117 GQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLt--kk 194 (257)
T 3bbo_N 117 GQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELS--KK 194 (257)
T ss_dssp SCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCSCSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCC--SS
T ss_pred CCCcchhhcccccccCCccccCcceeeeEeHHHHhhcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccC--CC
Confidence 45899999999 89986 457999999999974 4311 01111 1368999999999 99
Q ss_pred eEEEEEecCHHHHHHHHHhCCEEEeH
Q 030771 97 LKVTALRFTETARARIEKAGGECLTF 122 (171)
Q Consensus 97 l~V~A~kfS~sAreKIekAGGkv~~l 122 (171)
++|.|++||++|+|+||+|||+|+++
T Consensus 195 LtVkA~~fSksA~eKIEaAGG~v~~i 220 (257)
T 3bbo_N 195 LTIKAGAFSTSAKEKLEYAGCSLIVL 220 (257)
T ss_dssp CCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred eEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999877
No 15
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.36 E-value=2.7e-13 Score=107.22 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHhhhcCC------CCCCccchHHHHhhhcc--------CC-CcEEEE-----EeeecCCcee-ecccCeEEEEEecC
Q 030771 47 VILKRLFMSK------VNKPPLSLSRLINFMKG--------KE-DKIAVV-----VGTVTDDIRA-YEVPALKVTALRFT 105 (171)
Q Consensus 47 rI~KRlf~~r------~~~~~VNLs~L~~~~~~--------~e-~k~vvv-----~~KVLg~G~l-t~v~kl~V~A~kfS 105 (171)
..+|++|++. ..+++|||++|+++.++ .+ +..+++ ++||||+|+| + .+++|.|..||
T Consensus 54 ~fGK~Gfr~~h~~~n~~~~~~VNLdkL~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~--~~v~v~a~~fS 131 (149)
T 4a17_K 54 YYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPN--QPVVVKAKYFS 131 (149)
T ss_dssp CSSCCSCCCSSCCCGGGCCCEEEGGGHHHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCS--SCCEEEESEEC
T ss_pred cCCCCCccCCCccCCcceeeEEEHHHHHHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCC--CCEEEEEeecC
Confidence 4578899862 34689999999877642 12 223444 6999999999 8 89999999999
Q ss_pred HHHHHHHHHhCCEEEeH
Q 030771 106 ETARARIEKAGGECLTF 122 (171)
Q Consensus 106 ~sAreKIekAGGkv~~l 122 (171)
++|+|+||+|||+|+.+
T Consensus 132 ~~A~~kIe~aGG~~~~~ 148 (149)
T 4a17_K 132 KTAERRIVAVGGACVLT 148 (149)
T ss_dssp HHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 99999999999999753
No 16
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=99.14 E-value=5.9e-12 Score=99.73 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCccchHHHHhhhccC----------CCc-EEEE-----EeeecCCcee-ecccCeEEEEEecCHHHHHHHHHhCCEEEe
Q 030771 59 KPPLSLSRLINFMKGK----------EDK-IAVV-----VGTVTDDIRA-YEVPALKVTALRFTETARARIEKAGGECLT 121 (171)
Q Consensus 59 ~~~VNLs~L~~~~~~~----------e~k-~vvv-----~~KVLg~G~l-t~v~kl~V~A~kfS~sAreKIekAGGkv~~ 121 (171)
.++|||++|..+.... +++ .+++ ++||||+|+| + .+++|.|..||++|+|+||+|||+|+.
T Consensus 70 ~~~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~--~~v~Vka~~fS~~A~ekIe~aGG~~~~ 147 (149)
T 3o58_Y 70 KPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN--VPVIVKARFVSKLAEEKIRAAGGVVEL 147 (149)
T ss_dssp CCSTTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCS--CCEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred cceEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCC--CCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 4799999998776421 122 2222 5899999999 8 899999999999999999999999975
No 17
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=98.92 E-value=5e-12 Score=99.67 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=54.3
Q ss_pred HHhhhcC---C---CCCCccchHHHHhhhccC----CCc-EEE-----EEeeecCCcee--ecccCeEEEEEecCHHHHH
Q 030771 49 LKRLFMS---K---VNKPPLSLSRLINFMKGK----EDK-IAV-----VVGTVTDDIRA--YEVPALKVTALRFTETARA 110 (171)
Q Consensus 49 ~KRlf~~---r---~~~~~VNLs~L~~~~~~~----e~k-~vv-----v~~KVLg~G~l--t~v~kl~V~A~kfS~sAre 110 (171)
-|.+|+. . ...++|||++|+++.+.. +++ .++ -++||||+|++ + .+++|.|..||++|+|
T Consensus 54 GK~G~r~~h~~~n~~~~~~VNl~kL~~lv~~~~a~~~~~~~vIDl~~~G~~KvLG~G~l~~~--~~v~Vka~~fS~~A~e 131 (144)
T 3iz5_O 54 GKVGMRYFHRLSNRFHCPAVNVERLWSMVPAEAGAGAGKAPVIDVTQFGYTKVLGKGMLPPE--RPIVVKAKLISKVAEK 131 (144)
T ss_dssp STTCTTSCCCSSCTTSCEEEGGGTSTTCTTSSEEEEECCSCCCSCCEEEESEECHHHHSTTC--TTCCCEECGGGSSCSC
T ss_pred CCCCccCCCccccccccceEEHHHHHHHhHHhhhccCCCceEEEeeccCcEEEeCCCccCCc--cCEEEEEeecCHHHHH
Confidence 3566663 2 234699999998887421 122 222 15899999999 8 9999999999999999
Q ss_pred HHHHhCCEEEe
Q 030771 111 RIEKAGGECLT 121 (171)
Q Consensus 111 KIekAGGkv~~ 121 (171)
|||+|||+|+.
T Consensus 132 kIe~aGG~v~~ 142 (144)
T 3iz5_O 132 KIKAAGGAVLL 142 (144)
T ss_dssp CCSSCCCCCCC
T ss_pred HHHHcCCEEEE
Confidence 99999999864
No 18
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=27.17 E-value=16 Score=27.91 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCCCCCCCHHHHHH-HHHHHHhhhccCChHHHHHHHhhhcC
Q 030771 16 RTAPKSDDIYLKLL-VKLYRFLVRRTDSNFNKVILKRLFMS 55 (171)
Q Consensus 16 rk~~~stN~~L~~L-i~~lk~~ar~t~~pl~rrI~KRlf~~ 55 (171)
+|+..+.||..+.+ +.++....+++|.+|+..|+.|-|.+
T Consensus 54 ~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 54 AHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 34455778887766 56788889999999999999877764
No 19
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.85 E-value=26 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHH-HHHHHHhhhccCChHHHHHHHhhhcC
Q 030771 17 TAPKSDDIYLKLL-VKLYRFLVRRTDSNFNKVILKRLFMS 55 (171)
Q Consensus 17 k~~~stN~~L~~L-i~~lk~~ar~t~~pl~rrI~KRlf~~ 55 (171)
|+..+.||..+.+ +.++....+++|.+|+..|+.|-|.+
T Consensus 49 Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 49 RRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3445567766554 56778889999999998888776664
No 20
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=22.65 E-value=60 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.5
Q ss_pred HHHHhhhccCChHHHHHHH
Q 030771 32 LYRFLVRRTDSNFNKVILK 50 (171)
Q Consensus 32 ~lk~~ar~t~~pl~rrI~K 50 (171)
-|+.+|-.-+-.+|+||+|
T Consensus 8 rykeaaldpnlnlyqriak 26 (34)
T 3s1b_A 8 RYKEAALDPNLNLYQRIAK 26 (34)
T ss_dssp HHHHHHHCSSCCHHHHHHH
T ss_pred HHHHhhcCCChhHHHHHHH
Confidence 4788888888999999998
No 21
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.19 E-value=24 Score=26.68 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHH-HHHHHHhhhccCChHHHHHHHhhhcC
Q 030771 16 RTAPKSDDIYLKLL-VKLYRFLVRRTDSNFNKVILKRLFMS 55 (171)
Q Consensus 16 rk~~~stN~~L~~L-i~~lk~~ar~t~~pl~rrI~KRlf~~ 55 (171)
+|+..+.||..+.+ +.++....+++|.+|+..|+.|-|.+
T Consensus 44 ~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 44 AHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 34455778877655 46777789999999999999887765
Done!