BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030772
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFL|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Zinc
Finger Protein 216
Length = 74
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 110 NRCSFCRKRIGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKS 150
NRC CRK++GLTGF CRC FC LHRYSDKHNC +DYK+
Sbjct: 26 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA 66
>pdb|1WFH|A Chain A, Solution Structrue Of The Zf-An1 Domain From Arabidopsis
Thaliana At2g36320 Protein
Length = 64
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 107 RPANRCSFCRKRIGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQD 154
RP NRC+ CRKR+GLTGF CRC TFC HRY + H C FD+KSAG
Sbjct: 14 RP-NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSG 60
>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis
Thaliana F5o11.17 Protein
Length = 74
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 99 ASSENPEKRPANRCSFCRKRIGLTGFKCRCEQTFCSLHRYSDKHNCVFDYK 149
A+ +P K A RC C K++G+TGFKCRC TFC HRY + H C FD+K
Sbjct: 15 AAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65
>pdb|1WG2|A Chain A, Solution Structure Of Zf-An1 Domain From Arabidopsis
Thaliana
Length = 64
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 107 RPANRCSFCRKRIGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQ 153
RP NRC C K++G+ GFKC+C TFC HRY +KH C FD+K G
Sbjct: 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGS 59
>pdb|1WFF|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Riken
Cdna 2810002d23 Protein
Length = 85
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 105 EKRPANRCSFCRKRIGL-TGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPV 162
+K+ C C K+ GL T F+CRC FC+ HRY++ H C +DYKSAG+ + +ANPV
Sbjct: 21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPV 79
>pdb|2KZY|A Chain A, Solution Nmr Structure Of The Znf216 A20 Zinc Finger
pdb|2L00|A Chain A, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 62
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 14 SHETQNTP--IYCANNCGFFGSANTNNLCSKCYKDYLLKQSKNPNPSPI 60
+ ET TP + C+ CGF+G+ TN +CS CYK++L +Q + SP+
Sbjct: 4 AQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPM 52
>pdb|1X4W|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
Hypothetical Protein Flj13222
Length = 67
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 126 CRCEQTFCSLHRYSDKHNCVFDYKSAG 152
CRC FC LHR ++H+C FD+ G
Sbjct: 35 CRCGYVFCMLHRLPEQHDCTFDHMGRG 61
>pdb|2C7M|A Chain A, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|A Chain A, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|C Chain C, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|E Chain E, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|G Chain G, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|I Chain I, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|K Chain K, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
Length = 74
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 19 NTPIYCANNCGFFGSANTNNLCSKCYKD 46
+ + C CG++G+ CSKC+++
Sbjct: 14 QSDLLCKKGCGYYGNPAWQGFCSKCWRE 41
>pdb|2FID|B Chain B, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|B Chain B, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|D Chain D, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|F Chain F, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
Length = 70
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 19 NTPIYCANNCGFFGSANTNNLCSKCYKD 46
+ + C CG++G+ CSKC+++
Sbjct: 11 QSELLCKKGCGYYGNPAWQGFCSKCWRE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,794,135
Number of Sequences: 62578
Number of extensions: 165579
Number of successful extensions: 303
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 13
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)