BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030775
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
 pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
          Length = 504

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 75  DEILVSGIDDIVTILRSDYENAYFVTGIF-TSEIYAED 111
           +++L +G+ D V + RS  +NA  + G+F T+E    D
Sbjct: 441 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 478


>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
           Tuberculosis At 2.8a
 pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
           Tuberculosis At 2.8a
          Length = 546

 Score = 27.7 bits (60), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 75  DEILVSGIDDIVTILRSDYENAYFVTGIF-TSEIYAED 111
           +++L +G+ D V + RS  +NA  + G+F T+E    D
Sbjct: 483 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 520


>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
 pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
          Length = 362

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 25  GTVNDGNKKTNNKTATPQFLKFAVSGVTELLRLFS-SFDKGRLDRVSYKQKDEILVSGID 83
           G+V D   ++NN           VS     +R+ + S   G +  ++Y     I++SGI 
Sbjct: 228 GSVGD---RSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSN---IVMSGIS 281

Query: 84  DIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPT--IRFRGTELY 127
           D   +++ DYE+    TG  T+ +  +D   E  T  +    TE+Y
Sbjct: 282 DYGVVIQQDYEDGK-PTGKPTNGVTIQDVKLESVTGSVDSGATEIY 326


>pdb|2HY5|A Chain A, Crystal Structure Of Dsrefh
 pdb|2HYB|A Chain A, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|D Chain D, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|G Chain G, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|J Chain J, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|M Chain M, Crystal Structure Of Hexameric Dsrefh
 pdb|2HYB|P Chain P, Crystal Structure Of Hexameric Dsrefh
          Length = 130

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 24  QGTVNDGNKKTNNKTATPQFLKFAVSGVTELLRLFSSFDK 63
           +G V++G    N K AT    KF +SG+ +L+      D+
Sbjct: 85  RGIVDEGEASRNGKDATNIHPKFRISGLGQLVEAAIQADR 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,914,481
Number of Sequences: 62578
Number of extensions: 190974
Number of successful extensions: 413
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 8
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)