Query 030775
Match_columns 171
No_of_seqs 112 out of 142
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 99.9 8.6E-22 1.9E-26 148.7 9.6 80 84-165 2-86 (113)
2 PF12680 SnoaL_2: SnoaL-like d 98.2 4.5E-06 9.7E-11 56.7 5.1 60 104-163 16-75 (102)
3 TIGR02096 conserved hypothetic 97.8 0.00013 2.9E-09 53.1 7.4 62 103-164 18-82 (129)
4 cd00781 ketosteroid_isomerase 97.6 0.00034 7.3E-09 50.8 6.8 61 103-163 23-85 (122)
5 PF07366 SnoaL: SnoaL-like pol 97.5 0.00067 1.4E-08 49.9 8.3 64 102-165 17-81 (126)
6 KOG4457 Uncharacterized conser 96.5 0.016 3.5E-07 48.8 8.4 85 79-166 32-125 (202)
7 COG4319 Ketosteroid isomerase 94.1 0.2 4.4E-06 40.3 6.6 58 105-162 32-93 (137)
8 PF13474 SnoaL_3: SnoaL-like d 93.8 0.3 6.5E-06 34.4 6.4 61 103-163 19-83 (121)
9 TIGR02246 conserved hypothetic 93.4 0.75 1.6E-05 32.9 8.0 72 86-158 6-84 (128)
10 PF14534 DUF4440: Domain of un 93.2 0.58 1.3E-05 31.9 6.9 60 103-162 19-80 (107)
11 PF07858 LEH: Limonene-1,2-epo 91.8 0.42 9E-06 37.5 5.2 53 105-157 24-77 (125)
12 cd00531 NTF2_like Nuclear tran 82.3 6.1 0.00013 26.7 5.9 34 103-136 19-57 (124)
13 PRK08241 RNA polymerase factor 81.5 4.7 0.0001 34.7 6.2 78 80-159 211-292 (339)
14 TIGR02960 SigX5 RNA polymerase 78.5 6.1 0.00013 33.6 5.9 74 83-160 204-283 (324)
15 KOG2546 Abl interactor ABI-1, 74.9 1 2.2E-05 42.6 0.2 82 84-168 73-159 (483)
16 PF13577 SnoaL_4: SnoaL-like d 71.5 24 0.00052 25.0 6.7 62 103-164 27-93 (127)
17 COG5485 Predicted ester cyclas 55.8 30 0.00065 27.9 5.0 54 109-164 31-84 (131)
18 PF02136 NTF2: Nuclear transpo 52.2 43 0.00093 23.9 5.1 48 102-151 19-68 (118)
19 PF10766 DUF2592: Protein of u 41.2 24 0.00052 23.2 2.0 21 43-63 18-38 (41)
20 PF10231 DUF2315: Uncharacteri 39.8 9.5 0.00021 30.2 -0.0 23 5-27 3-25 (126)
21 PF12893 Lumazine_bd_2: Putati 37.4 1.6E+02 0.0035 21.3 7.4 81 82-163 3-90 (116)
22 KOG4701 Chitinase [Cell wall/m 32.0 79 0.0017 30.4 4.6 75 53-149 131-214 (568)
23 PRK09636 RNA polymerase sigma 28.4 2.4E+02 0.0052 24.0 6.7 41 99-139 185-235 (293)
24 PF04965 GPW_gp25: Gene 25-lik 27.7 1.9E+02 0.004 20.5 5.1 75 84-163 5-87 (99)
25 cd00780 NTF2 Nuclear transport 26.7 2E+02 0.0043 21.0 5.2 44 103-148 23-67 (119)
26 PF08348 PAS_6: YheO-like PAS 20.7 1.2E+02 0.0027 23.2 3.2 32 124-155 2-34 (118)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.87 E-value=8.6e-22 Score=148.68 Aligned_cols=80 Identities=33% Similarity=0.580 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhhhccccccccccccccceeeeCCCccccchHHHHHH---HHhhcc-ccCCCceEEEEEEecCc-EEEEE
Q 030775 84 DIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRN---LRLLVP-FFEYPSIGLQNIKKVRY-FLQID 158 (171)
Q Consensus 84 ~v~~~Lr~Dy~~~Yfvtg~~t~~iYa~D~~F~DPfn~F~G~d~yk~~---l~~l~~-~f~~prf~L~di~~~~~-~~~lr 158 (171)
+++++||+||+++| +|+++++||++||+|+||+++|+|+++|++| +++++. +|.+++++|+++++.++ .+.+|
T Consensus 2 ~~~~~Lr~D~~~~f--~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~r 79 (113)
T PF10184_consen 2 DVIRTLREDLPRFF--TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRAR 79 (113)
T ss_pred hHHHHHHHHHHHHh--cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEE
Confidence 58999999999886 9999999999999999999999999999999 999998 89999999999999986 99999
Q ss_pred EEEEeee
Q 030775 159 IVFQLIN 165 (171)
Q Consensus 159 W~F~~~~ 165 (171)
|+|.+..
T Consensus 80 W~~~g~~ 86 (113)
T PF10184_consen 80 WRLRGVP 86 (113)
T ss_pred EEEEEEe
Confidence 9998753
No 2
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.15 E-value=4.5e-06 Score=56.74 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=56.3
Q ss_pred cccccccceeeeCCCccccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEEEEEEEe
Q 030775 104 TSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQL 163 (171)
Q Consensus 104 t~~iYa~D~~F~DPfn~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~lrW~F~~ 163 (171)
..++|+|||.|.||....+|.+.|+..++.+...+.+.+++++++...|+.+.++|++++
T Consensus 16 i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 16 IAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADGDRVVVEWTVTG 75 (102)
T ss_dssp HHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcCCEEEEEEEEEE
Confidence 357899999999998899999999999999999899999999999999999999999986
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=97.77 E-value=0.00013 Score=53.14 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=54.1
Q ss_pred ccccccccceeeeCCCc--cccchHHHHHHHHhhccccCCCceEEEEEEecCc-EEEEEEEEEee
Q 030775 103 FTSEIYAEDCIFEDPTI--RFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRY-FLQIDIVFQLI 164 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPfn--~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~-~~~lrW~F~~~ 164 (171)
-..++|+||+.|.||.. ...|++.+++.++.++..+.+.+++++++...++ .+...|++++.
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 82 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGT 82 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeee
Confidence 45789999999999975 4678999999999999999999999999877765 99999998864
No 4
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=97.55 E-value=0.00034 Score=50.83 Aligned_cols=61 Identities=10% Similarity=-0.054 Sum_probs=45.8
Q ss_pred ccccccccceeeeCCCcc--ccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEEEEEEEe
Q 030775 103 FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQL 163 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPfn~--F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~lrW~F~~ 163 (171)
...++|+|||.|.||... ++|++.+++.+..+...+....+........++.+.+.|+++.
T Consensus 23 ~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (122)
T cd00781 23 GIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHGGEAAFAFRVEF 85 (122)
T ss_pred HHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecCCEEEEEEEEEE
Confidence 467899999999999654 9999999999998877655555544444555677766777653
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=97.54 E-value=0.00067 Score=49.92 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=58.9
Q ss_pred cccccccccceeeeCCC-ccccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEEEEEEEeee
Q 030775 102 IFTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQLIN 165 (171)
Q Consensus 102 ~~t~~iYa~D~~F~DPf-n~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~lrW~F~~~~ 165 (171)
+...++|+|||.+.+|. ....|++.|+..+..+...|.+.++++.++...|+.+.++|+++...
T Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~~Gth 81 (126)
T PF07366_consen 17 DALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTFTGTH 81 (126)
T ss_dssp CHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEEEee
Confidence 35678999999999997 78999999999999999999999999999999999999999997654
No 6
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.016 Score=48.76 Aligned_cols=85 Identities=14% Similarity=0.257 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHhhh-hhccccccccccccccceeeeCCCccc--cchHHHHHH---HHhhcc-ccCCCceEEEEEEec
Q 030775 79 VSGIDDIVTILRSDYE-NAYFVTGIFTSEIYAEDCIFEDPTIRF--RGTELYSRN---LRLLVP-FFEYPSIGLQNIKKV 151 (171)
Q Consensus 79 ~~~~~~v~~~Lr~Dy~-~~Yfvtg~~t~~iYa~D~~F~DPfn~F--~G~d~yk~~---l~~l~~-~f~~prf~L~di~~~ 151 (171)
|-+.+-+-+.||+..+ .| -..+.|++|++|+.|.|-..+. +|+..|..- ++.++. ++...+|++.++..-
T Consensus 32 pe~L~~~yerLr~tlPklF---~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h 108 (202)
T KOG4457|consen 32 PEQLEHVYERLRETLPKLF---RRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPH 108 (202)
T ss_pred hHHHHHHHHHHHHHhHHHH---hhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeeccc
Confidence 4567788999999996 55 6789999999999999988766 578888764 555554 567889999999765
Q ss_pred --CcEEEEEEEEEeeeE
Q 030775 152 --RYFLQIDIVFQLINI 166 (171)
Q Consensus 152 --~~~~~lrW~F~~~~~ 166 (171)
+.++.+|||+..+..
T Consensus 109 ~d~~Tvr~RWRv~gvsv 125 (202)
T KOG4457|consen 109 IDEGTVRCRWRVKGVSV 125 (202)
T ss_pred CCCceEEEEEEEecceE
Confidence 478999999877654
No 7
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=94.11 E-value=0.2 Score=40.32 Aligned_cols=58 Identities=9% Similarity=0.254 Sum_probs=48.0
Q ss_pred ccccccceeeeCCC-ccccchHHHHHHHHhhccc-cCCCceEEEEEE--ecCcEEEEEEEEE
Q 030775 105 SEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPF-FEYPSIGLQNIK--KVRYFLQIDIVFQ 162 (171)
Q Consensus 105 ~~iYa~D~~F~DPf-n~F~G~d~yk~~l~~l~~~-f~~prf~L~di~--~~~~~~~lrW~F~ 162 (171)
.+.|+|||.|=||. -.+.|.+.|++++.-++.. -..+.|++.++. .+||.+|..=.++
T Consensus 32 ~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~~~~~ 93 (137)
T COG4319 32 ADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVTALLL 93 (137)
T ss_pred HHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEEEeee
Confidence 45699999999996 8999999999999988864 457889999988 8888887754443
No 8
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=93.80 E-value=0.3 Score=34.45 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred ccccccccceeeeCCC--ccccchHHHHHHHHhhccccCCCceEEEEE--EecCcEEEEEEEEEe
Q 030775 103 FTSEIYAEDCIFEDPT--IRFRGTELYSRNLRLLVPFFEYPSIGLQNI--KKVRYFLQIDIVFQL 163 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPf--n~F~G~d~yk~~l~~l~~~f~~prf~L~di--~~~~~~~~lrW~F~~ 163 (171)
...++|+||+.+-+|. ..++|.+.+++.++..+..+...+++..++ ...++.+++...+..
T Consensus 19 ~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~~~ 83 (121)
T PF13474_consen 19 ALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVTGEFRL 83 (121)
T ss_dssp HHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEEEEEEE
Confidence 6778999999998854 567899999999988776666666666654 445677776665543
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=93.42 E-value=0.75 Score=32.92 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHhhhhhcccccc--ccccccccceeeeC-CCccccchHHHHHHHHhhccccCC---CceEEEEEEecC-cEEEEE
Q 030775 86 VTILRSDYENAYFVTGI--FTSEIYAEDCIFED-PTIRFRGTELYSRNLRLLVPFFEY---PSIGLQNIKKVR-YFLQID 158 (171)
Q Consensus 86 ~~~Lr~Dy~~~Yfvtg~--~t~~iYa~D~~F~D-Pfn~F~G~d~yk~~l~~l~~~f~~---prf~L~di~~~~-~~~~lr 158 (171)
++.|-+.|... +-.+| ...++|++|+.|.+ |...+.|.+.++..++.+...+.. ..++..++...+ +.+...
T Consensus 6 i~~l~~~~~~a-~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~ 84 (128)
T TIGR02246 6 IRALVATWEAA-WAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVH 84 (128)
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEE
Confidence 33344446433 22555 47899999999984 445689999999998766554433 245555665444 454444
No 10
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=93.19 E-value=0.58 Score=31.92 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=42.6
Q ss_pred ccccccccceeeeCCCccccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEE--EEEEE
Q 030775 103 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQI--DIVFQ 162 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPfn~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~l--rW~F~ 162 (171)
...++|+||+.|-.|.....|++.+.+.+.....-....+++..++...++.+.+ +|+++
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~gd~a~~~~~~~~~ 80 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLGDTAVVRGRWTFT 80 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEECCEEEEEEEEEEE
Confidence 5678999999999999989999999888876433334445555666666766443 44444
No 11
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=91.79 E-value=0.42 Score=37.53 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=45.7
Q ss_pred ccccccc-eeeeCCCccccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEE
Q 030775 105 SEIYAED-CIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQI 157 (171)
Q Consensus 105 ~~iYa~D-~~F~DPfn~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~l 157 (171)
..+.++| +|..-|+-..+|+++.++.++.|..-+..-.+++|++...|+.+++
T Consensus 24 ~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg~~Vlt 77 (125)
T PF07858_consen 24 ASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADGDVVLT 77 (125)
T ss_dssp HHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEETTEEEE
T ss_pred HHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecCCEEEE
Confidence 3466899 9999999999999999999999976677788999999998877655
No 12
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=82.31 E-value=6.1 Score=26.73 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.5
Q ss_pred ccccccccceeeeCCC-----ccccchHHHHHHHHhhcc
Q 030775 103 FTSEIYAEDCIFEDPT-----IRFRGTELYSRNLRLLVP 136 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPf-----n~F~G~d~yk~~l~~l~~ 136 (171)
.+..+|++|++|..|. ..+.|++.++..++.+..
T Consensus 19 ~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 57 (124)
T cd00531 19 WLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPF 57 (124)
T ss_pred HHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCC
Confidence 4678999999999998 688999999999888764
No 13
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=81.48 E-value=4.7 Score=34.74 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHhhhhhccccccc--cccccccceeeeCCCcc--ccchHHHHHHHHhhccccCCCceEEEEEEecCcEE
Q 030775 80 SGIDDIVTILRSDYENAYFVTGIF--TSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFL 155 (171)
Q Consensus 80 ~~~~~v~~~Lr~Dy~~~Yfvtg~~--t~~iYa~D~~F~DPfn~--F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~ 155 (171)
.+.++..+++++=|+.+ -.||+ ..++++|||.+.+|-.. ++|.+.+...+..+......+.+.+..+...|+.+
T Consensus 211 ~~~~~~~~~v~~~~~A~--~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAAF--EAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANGQPA 288 (339)
T ss_pred CCChHHHHHHHHHHHHH--hcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCCCeE
Confidence 34455555555544432 25663 56799999999999877 99999999998887543333445555555556666
Q ss_pred EEEE
Q 030775 156 QIDI 159 (171)
Q Consensus 156 ~lrW 159 (171)
.+.+
T Consensus 289 ~~~~ 292 (339)
T PRK08241 289 FAQY 292 (339)
T ss_pred EEEE
Confidence 6543
No 14
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=78.52 E-value=6.1 Score=33.64 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhhhcccccc--ccccccccceeeeCCCcc--ccchHHHHHHHHhh--ccccCCCceEEEEEEecCcEEE
Q 030775 83 DDIVTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLL--VPFFEYPSIGLQNIKKVRYFLQ 156 (171)
Q Consensus 83 ~~v~~~Lr~Dy~~~Yfvtg~--~t~~iYa~D~~F~DPfn~--F~G~d~yk~~l~~l--~~~f~~prf~L~di~~~~~~~~ 156 (171)
++..++|++=|+. |-.|| -..++++|||.|.+|... +.|.+.+...+..+ ...+. .+.+.-+...|+.+.
T Consensus 204 ~~~~~~v~~~~~a--~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~ 279 (324)
T TIGR02960 204 PEEQDLLERYIAA--FESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAA--GMRLLPTIANGQPAA 279 (324)
T ss_pred HHHHHHHHHHHHH--HHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCC--ceeEEEeeecCCceE
Confidence 3444444443332 23666 356899999999999744 99999999888887 44443 444444556677777
Q ss_pred EEEE
Q 030775 157 IDIV 160 (171)
Q Consensus 157 lrW~ 160 (171)
+.|.
T Consensus 280 v~~~ 283 (324)
T TIGR02960 280 AMYM 283 (324)
T ss_pred EEEE
Confidence 7664
No 15
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=74.87 E-value=1 Score=42.63 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=63.0
Q ss_pred HHHHHHHHhhh-hhccccccccccccccceeeeCCCccccchHHHHHHHHhhcc----ccCCCceEEEEEEecCcEEEEE
Q 030775 84 DIVTILRSDYE-NAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVP----FFEYPSIGLQNIKKVRYFLQID 158 (171)
Q Consensus 84 ~v~~~Lr~Dy~-~~Yfvtg~~t~~iYa~D~~F~DPfn~F~G~d~yk~~l~~l~~----~f~~prf~L~di~~~~~~~~lr 158 (171)
.+++.|+...+ .+ --.....+|+.+|.|.+|.+.+++|..|+.|....-. ++.++...+.-+.+.=+..+++
T Consensus 73 ~~l~mL~lQ~~~L~---~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPid~~mLd 149 (483)
T KOG2546|consen 73 HALRMLDLQAPQLR---YMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPIDYSMLD 149 (483)
T ss_pred HHHHHHHHHHHHHH---HHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccccceeee
Confidence 35555555553 33 2234557899999999999999999999998543332 4677888888899988899999
Q ss_pred EEEEeeeEee
Q 030775 159 IVFQLINISW 168 (171)
Q Consensus 159 W~F~~~~~~~ 168 (171)
|.-|-|--+|
T Consensus 150 ~igHGIr~~~ 159 (483)
T KOG2546|consen 150 DIGHGIRGSW 159 (483)
T ss_pred cccccccccc
Confidence 9999997777
No 16
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=71.46 E-value=24 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=42.4
Q ss_pred ccccccccceeeeCCC---ccccchHHHHHHHHhhccccCCCce--EEEEEEecCcEEEEEEEEEee
Q 030775 103 FTSEIYAEDCIFEDPT---IRFRGTELYSRNLRLLVPFFEYPSI--GLQNIKKVRYFLQIDIVFQLI 164 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPf---n~F~G~d~yk~~l~~l~~~f~~prf--~L~di~~~~~~~~lrW~F~~~ 164 (171)
...++|++|+.|.=|- ..+.|.+.+.+++.....-.....- .-+.|...++.+..+|.+...
T Consensus 27 ~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~~~~~~~ 93 (127)
T PF13577_consen 27 EWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVRSYVLAT 93 (127)
T ss_dssp HHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEEEEEEEE
Confidence 5678999999997774 5899999999998886532211111 111234467888888887754
No 17
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=55.80 E-value=30 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=44.0
Q ss_pred ccceeeeCCCccccchHHHHHHHHhhccccCCCceEEEEEEecCcEEEEEEEEEee
Q 030775 109 AEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVRYFLQIDIVFQLI 164 (171)
Q Consensus 109 a~D~~F~DPfn~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~~~~~lrW~F~~~ 164 (171)
.+||.+. ...-.|++.|+.++-.+++-+.+-+|++...-..++++-.|=.|.|-
T Consensus 31 v~~~v~~--ng~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~~~vaarl~Fdct 84 (131)
T COG5485 31 VDGNVMH--NGRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEGDRVAARLTFDCT 84 (131)
T ss_pred CcCeeee--CCceechHHHHHHHHhhHhhCCCcceEEEEEeecCCceEEEEEEccC
Confidence 3444443 24567999999999999999999999999998888888888888763
No 18
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=52.21 E-value=43 Score=23.92 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=36.7
Q ss_pred cccccccccceeeeCCCcc--ccchHHHHHHHHhhccccCCCceEEEEEEec
Q 030775 102 IFTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIKKV 151 (171)
Q Consensus 102 ~~t~~iYa~D~~F~DPfn~--F~G~d~yk~~l~~l~~~f~~prf~L~di~~~ 151 (171)
+.+..+|++|+.+.++... +.|.+.+.+.+..|-..- .++.+.++.-+
T Consensus 19 ~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~q 68 (118)
T PF02136_consen 19 EGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQ 68 (118)
T ss_dssp GGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEE
T ss_pred HHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccc
Confidence 3577899899988888887 999999999988887643 25566655444
No 19
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=41.18 E-value=24 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=16.8
Q ss_pred hhhhhhhhhHHHHHhhhcCCC
Q 030775 43 FLKFAVSGVTELLRLFSSFDK 63 (171)
Q Consensus 43 ~lk~av~g~tEll~~~~~~~~ 63 (171)
+.-++.|||-|++|.+|-.+.
T Consensus 18 ~ilglIyGlGevfN~iS~~Gh 38 (41)
T PF10766_consen 18 LILGLIYGLGEVFNLISKIGH 38 (41)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 455789999999999996554
No 20
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=39.84 E-value=9.5 Score=30.18 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=18.1
Q ss_pred eeccccCCCCCCcceeeeecccc
Q 030775 5 RWFGQTHQSVNRRSILGSIQGTV 27 (171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (171)
-|+|.||..+|.|+|.-.+...+
T Consensus 3 d~igPPd~~SNlRpi~~~~~~nE 25 (126)
T PF10231_consen 3 DWIGPPDPVSNLRPIIFHIPENE 25 (126)
T ss_pred CCcCCCCccCCcceeeccCCCCC
Confidence 59999999999999766554333
No 21
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=37.36 E-value=1.6e+02 Score=21.33 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhh-hhhccccccccccccccceee---eCCCccccchHHHHHHHHhh---ccccCCCceEEEEEEecCcE
Q 030775 82 IDDIVTILRSDY-ENAYFVTGIFTSEIYAEDCIF---EDPTIRFRGTELYSRNLRLL---VPFFEYPSIGLQNIKKVRYF 154 (171)
Q Consensus 82 ~~~v~~~Lr~Dy-~~~Yfvtg~~t~~iYa~D~~F---~DPfn~F~G~d~yk~~l~~l---~~~f~~prf~L~di~~~~~~ 154 (171)
.++|.++|.. | +..|---...+.+++.||+.. .+.-.....++.|.+.++.- .....+....+..|...++.
T Consensus 3 ~~~I~~~v~~-Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~ 81 (116)
T PF12893_consen 3 EAAIEATVQD-YFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDV 81 (116)
T ss_dssp HHHHHHHHHH-HHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTE
T ss_pred HHHHHHHHHH-HHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCE
Confidence 4566676666 5 555433444788999999965 22236677889999888875 34556777888999999988
Q ss_pred EEEEEEEEe
Q 030775 155 LQIDIVFQL 163 (171)
Q Consensus 155 ~~lrW~F~~ 163 (171)
+.++=++.+
T Consensus 82 A~a~v~~~~ 90 (116)
T PF12893_consen 82 ASAKVEYEF 90 (116)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 766655554
No 22
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=32.04 E-value=79 Score=30.38 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred HHHHhhhcCCCC-Ccchhcccccccc-----ccCCHHHHHHHHHHhhh---hhccccccccccccccceeeeCCCccccc
Q 030775 53 ELLRLFSSFDKG-RLDRVSYKQKDEI-----LVSGIDDIVTILRSDYE---NAYFVTGIFTSEIYAEDCIFEDPTIRFRG 123 (171)
Q Consensus 53 Ell~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~v~~~Lr~Dy~---~~Yfvtg~~t~~iYa~D~~F~DPfn~F~G 123 (171)
.|-+.|+++..+ |+-..+-.++.++ .+..-.++...|+.-|. |.||+++ +|.|-|.|-
T Consensus 131 ~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~~~~ysaLA~~L~~~Fa~~~r~yYLsa-------APQCP~PD~------ 197 (568)
T KOG4701|consen 131 QLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGTNTAYSALAKRLLEIFASDPRRYYLSA-------APQCPVPDH------ 197 (568)
T ss_pred HHHHHhcCCccccCcccchhccceeeeeecCCcchHHHHHHHHHHHHccCCceEEecc-------CCCCCCCch------
Confidence 456777754422 3322222233222 35667889999999884 8899888 899999983
Q ss_pred hHHHHHHHHhhccccCCCceEEEEEE
Q 030775 124 TELYSRNLRLLVPFFEYPSIGLQNIK 149 (171)
Q Consensus 124 ~d~yk~~l~~l~~~f~~prf~L~di~ 149 (171)
.|+..+.+.+|+..-|+
T Consensus 198 ---------~~G~aL~~~~fDf~~IQ 214 (568)
T KOG4701|consen 198 ---------TLGKALSENSFDFLSIQ 214 (568)
T ss_pred ---------hhhhhhhccccceEEEE
Confidence 36777777777766654
No 23
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=28.43 E-value=2.4e+02 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.2
Q ss_pred cccc--ccccccccceeee-CCC-------ccccchHHHHHHHHhhccccC
Q 030775 99 VTGI--FTSEIYAEDCIFE-DPT-------IRFRGTELYSRNLRLLVPFFE 139 (171)
Q Consensus 99 vtg~--~t~~iYa~D~~F~-DPf-------n~F~G~d~yk~~l~~l~~~f~ 139 (171)
-.|| -+.++++|||.|. |+- ..+.|.++..+.+..+...+.
T Consensus 185 ~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 185 ASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred HhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 3566 6789999999998 653 346899999988887776543
No 24
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=27.71 E-value=1.9e+02 Score=20.47 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHHHHHHhhh-----hhccccccccccccccceeeeCCCccccchHHHHHHHHhhccccCCCceEEEEEEecC---cEE
Q 030775 84 DIVTILRSDYE-----NAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIKKVR---YFL 155 (171)
Q Consensus 84 ~v~~~Lr~Dy~-----~~Yfvtg~~t~~iYa~D~~F~DPfn~F~G~d~yk~~l~~l~~~f~~prf~L~di~~~~---~~~ 155 (171)
+..+.|+++.+ +..-......++ -+|..|..- +-.-...+++.+...-..| +||+.+.+|.-.. +..
T Consensus 5 ~~~~~I~q~l~~lL~Tr~g~~~~~~~yG--l~d~~~~~~--~~~~~~~i~~~I~~aI~~~-EPRl~~~~V~~~~~~~~~~ 79 (99)
T PF04965_consen 5 SLRESIRQSLEMLLNTRPGERPSRPDYG--LPDLIFEPI--SPDTRQAIRREIREAIQRF-EPRLKVVSVEVEEDDDEDG 79 (99)
T ss_dssp -HHHHHHHHHHHHHT--TTSSTT-TT-S--GGG---S-----HHHHHHHHHHHHHHHHHH--TTEEEEEEEEE-TTGGGT
T ss_pred hHHHHHHHHHHHHHCCCCCccccCcccC--ChhHcCCCC--CHHHHHHHHHHHHHHHHHh-CCcEEEEEEEEEecCCCCC
Confidence 34555555553 332333445555 334444432 3344556666666655545 6999999987665 445
Q ss_pred EEEEEEEe
Q 030775 156 QIDIVFQL 163 (171)
Q Consensus 156 ~lrW~F~~ 163 (171)
.+.++.++
T Consensus 80 ~l~~~I~~ 87 (99)
T PF04965_consen 80 KLTFTISG 87 (99)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55555544
No 25
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=26.67 E-value=2e+02 Score=20.95 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=34.1
Q ss_pred ccccccccceeeeCCC-ccccchHHHHHHHHhhccccCCCceEEEEE
Q 030775 103 FTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEYPSIGLQNI 148 (171)
Q Consensus 103 ~t~~iYa~D~~F~DPf-n~F~G~d~yk~~l~~l~~~f~~prf~L~di 148 (171)
.+..+|.++..|.=+- +...|.+.+...+..|-. .....++.++
T Consensus 23 ~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~--~~~~~~i~~~ 67 (119)
T cd00780 23 GLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF--QKTKHKITTV 67 (119)
T ss_pred HHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC--cceEEEEEEE
Confidence 4578899999999888 999999999999887764 2345555554
No 26
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=20.74 E-value=1.2e+02 Score=23.19 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhccccC-CCceEEEEEEecCcEE
Q 030775 124 TELYSRNLRLLVPFFE-YPSIGLQNIKKVRYFL 155 (171)
Q Consensus 124 ~d~yk~~l~~l~~~f~-~prf~L~di~~~~~~~ 155 (171)
++.|+.++++++..|. +.-+.|||+...+..+
T Consensus 2 L~~y~~l~~~l~~~lG~~~EVVLHDl~~~~~sI 34 (118)
T PF08348_consen 2 LKSYIPLVDFLAATLGPNCEVVLHDLSDPEHSI 34 (118)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEECCCCCCEE
Confidence 5789999999998874 6778899998766554
Done!