BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030776
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 4/166 (2%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKA 65
+ + VCVTGASGF+ SWLV LL+RGYTV+ATVRDP N K +HL +L A L L+KA
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L +++SCA +++R+
Sbjct: 64 DLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRL 123
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKVCKLNFTIS 171
V TSS G + + E + V DE+ +S+ C+ K+ + +S
Sbjct: 124 VFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWMYFVS 166
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKAN 66
+K CV G +GFVAS LVKLLLQ+GY V TVRDP N K HL EL + L +F+A+
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L +E SF++ + GCD VFH A+PV F S++P+ D++ PA+ G +NV+++C + S+KRV+
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVI 127
Query: 127 LTSSIGAMLLNETPMTPDVVIDETW 151
LTSS A+ +N+ T VV ++ W
Sbjct: 128 LTSSAAAVTINQLDGTGLVVDEKNW 152
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPK-TEHLRELDGATERLHLFKANLL 68
VCVTG +GF+ SW++K LL+ GY+V T+R DP + L L GA+E+LH F A+L
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
SF +A++GC G+FHTASP+ F P+ + V G L +L++C ++KR + T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKVCKLNFTIS 171
SS A+ N V+DE+ +S+ L + K N+ +S
Sbjct: 124 SSGSAVSFNGKDKD---VLDESDWSDVDLLRSVKPFGWNYAVS 163
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 9/149 (6%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
++L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A S+K
Sbjct: 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDE-TW 151
R VLTSS + L+ + P + +DE +W
Sbjct: 126 RFVLTSSTVSALIPK-PNVEGIYLDEKSW 153
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 9/149 (6%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
+ L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A S+K
Sbjct: 68 VEDXLKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDE-TW 151
R VLTSS + L+ + P + +DE +W
Sbjct: 126 RFVLTSSTVSALIPK-PNVEGIYLDEKSW 153
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GASGFV S L+ L RG+ V A VR P K E+ E L + KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--------EHLKVKKADV- 55
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
S D + C G S +NP DI D + L ++ K + R +
Sbjct: 56 --SSLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKKA-GVNRFLXV 110
Query: 129 SSIGAMLL 136
G++ +
Sbjct: 111 GGAGSLFI 118
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELDGATERLHLFKANL 67
K V VTG +GF SWL L + G VK D P P + L+ E H+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMES-HIGDIRD 68
Query: 68 LEEGSFDSAVDGCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
E+ A + VFH A+ P++ LS VMGT+++L + +V +IK VV
Sbjct: 69 FEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNIKAVV 128
Query: 127 LTSS 130
+S
Sbjct: 129 NITS 132
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSS 130
SS
Sbjct: 143 ASS 145
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSS 130
SS
Sbjct: 143 ASS 145
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSS 130
SS
Sbjct: 143 ASS 145
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSS 130
SS
Sbjct: 143 ASS 145
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV L++ GY V V + +S + RE + LH+ L++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV-VVVDNLSSGR----REFVNPSAELHVRD---LKD 54
Query: 71 GSFDSAVDGCDGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
S+ + + G D VFH A+P + LS + V+ T NVL A+ ++ VV S
Sbjct: 55 YSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL-EWARQTGVRTVVFAS 112
Query: 130 S 130
S
Sbjct: 113 S 113
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPNSPKT-EHLRELDGATERLHLFK 64
+ K V VTG +GF WL L G TVK ++ P P E R DG + +
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 65 AN--LLEE-GSFDSAVDGCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
LLE F + VFH A+ P++ LS + + VMGT+ +L + V
Sbjct: 68 DQNKLLESIREFQPEI-----VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
Query: 121 SIKRVVLTSS 130
+K VV +S
Sbjct: 123 GVKAVVNITS 132
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
+ VTG +GF+ S LV L++ GY V RD H+R+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRD--------------- 47
Query: 68 LEEGSFDSAVDGCDGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L++ S+ + + G D VFH A+P + LS + V+ T NVL A+ ++ VV
Sbjct: 48 LKDYSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL-EWARQTGVRTVV 105
Query: 127 LTSS 130
SS
Sbjct: 106 FASS 109
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+G L +++ +R + +R L LD A + +L
Sbjct: 4 KRLLVTGAAG----QLGRVMRERLAPMAEILR------LADLSPLDPAGPNEECVQCDLA 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + ++ V GCDG+ H + + P I+ ++G N L A+ H R+V
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISV---EKPFEQILQGNIIGLYN-LYEAARAHGQPRIVFA 109
Query: 129 SS---IGAMLLNETPMTPDV 145
SS IG E + PDV
Sbjct: 110 SSNHTIGYYPQTER-LGPDV 128
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+G L +++ +R + +R L LD A + +L
Sbjct: 4 KRLLVTGAAG----QLGRVMRERLAPMAEILR------LADLSPLDPAGPNEECVQCDLA 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + ++ V GCDG+ H + + P I+ ++G N L A+ H R+V
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISV---EKPFEQILQGNIIGLYN-LYEAARAHGQPRIVFA 109
Query: 129 SS---IGAMLLNETPMTPDV 145
SS IG E + PDV
Sbjct: 110 SSNHTIGYYPQTER-LGPDV 128
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVR---DPNSPKTEHL----RELDGATERLH 61
K+ +TG +G S+L + LL +GY V +R + N+ + H+ ++ A +LH
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 88
Query: 62 LFKANLLEEGSFDSAVD--GCDGVFHTAS----PVIFLSDNPQADIVDPAVMGTLNVLRS 115
A+L + S +D D V++ A+ V F + AD+V + L +RS
Sbjct: 89 Y--ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 146
Query: 116 CAKVHSIKRVVLTSSIGAMLLNETP 140
+ S + V + + + TP
Sbjct: 147 HT-IDSGRTVKYYQAGSSEMFGSTP 170
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHL 50
V +TG +G S+L + LL++GY V VR N+ + EHL
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHL 69
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL 50
KV +TG +G S+L + LL++GY V R +S TE +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV 43
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
+ VTG +G ++L KLLL++GY V V +S LREL
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL 59
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG+SG + + LV L ++ Y K N ++ ++ G + + L +N E
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKK------NVIASDIVQRDTGGIKFITLDVSNRDE 53
Query: 70 EGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
D AV+ D +FH A + + A + GT N+L AK H +++VV+
Sbjct: 54 ---IDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNIL-EAAKQHRVEKVVI 109
Query: 128 TSSIGAMLLNETPMTP 143
S+IG P TP
Sbjct: 110 PSTIGVF----GPETP 121
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG+SG + + LV L ++ Y K N ++ ++ G + + L +N E
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKK------NVIASDIVQRDTGGIKFITLDVSNRDE 53
Query: 70 EGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
D AV+ D +FH A + + A + GT N+L AK H +++VV+
Sbjct: 54 ---IDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNIL-EAAKQHRVEKVVI 109
Query: 128 TSSIGAMLLNETPMTP 143
S+IG P TP
Sbjct: 110 PSTIGVF----GPETP 121
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
E V VTGA+G V S V L +RGYTV+A+ + + ++LR L GA E L
Sbjct: 149 ERGPVLVTGATGGVGSLAVSXLAKRGYTVEAST--GKAAEHDYLRVL-GAKEVL 199
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
MSG K +TG G ++L KLLL++GY V R + L+EL G +
Sbjct: 1 MSG----KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL-GIENDVK 55
Query: 62 LFKANLLE 69
+ +LLE
Sbjct: 56 IIHMDLLE 63
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
EG + V +TGAS + +LL +GY V RD + L+ L E
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARD-----EKRLQALAAELEGALPLP 56
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP 104
++ EEG + AV + F S ++ +N ++ P
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALV---NNAGVGVMKP 93
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40
++KVV +TGAS + + LV+ R Y V AT R
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSR 60
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 24 LVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA 65
+VKLLL +G V A +D N+P EHL + +G E + L A
Sbjct: 57 IVKLLLAKGADVNARSKDGNTP--EHLAKKNGHHEIVKLLDA 96
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L+ G+ V TV D + E E L
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 59
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAK 118
+++E + D ++H ASP +P + +P +GTLN+L +
Sbjct: 60 HDVVEPLYIE-----VDQIYHLASPA-----SPPNYMYNPIKTLKTNTIGTLNMLGLAKR 109
Query: 119 VHSIKRVVLTSS 130
V + R++L S+
Sbjct: 110 VGA--RLLLAST 119
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG +GF+ S +V L + V V D S E E L KA+L
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNEIV---VIDNLSSGNEEF-----VNEAARLVKADLAA 54
Query: 70 EGSFDSAVDGCDGVFHTAS--PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ D + G + V+H A+ V ++NP +I V+ T +L + K + R+V
Sbjct: 55 DDIKDY-LKGAEEVWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKA-GVSRIVF 111
Query: 128 TSS 130
TS+
Sbjct: 112 TST 114
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GA+G + +Q GY V VRD + +E R H+ ++L
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-------AHVVVGDVL 56
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVM--GTLNVLRSCAKVHSIKRVV 126
+ D V G D V V+ + N D+ VM G N++ + K H + +VV
Sbjct: 57 QAADVDKTVAGQDAVI-----VLLGTRN---DLSPTTVMSEGARNIV-AAMKAHGVDKVV 107
Query: 127 LTSS 130
+S
Sbjct: 108 ACTS 111
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGY 33
+ E K+V VTG +G++ S V L++ GY
Sbjct: 4 QLQSESTSKIVLVTGGAGYIGSHTVVELIENGY 36
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPK 46
V VTG +GF+ S +V+ LL RG V AT + N PK
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK 43
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEH--LRELDG--ATERLHLFKANL- 67
+TGA+GF+ ++L++ L + + +R N + + L+ + E + + +N+
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIE 214
Query: 68 LEEGSFDSAVD-----GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
+ G F+ D D + H + D+ + + V+ V GT++V+R + H+
Sbjct: 215 VIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQHHAR 272
Query: 123 KRVVLTSSIGAML 135
V T S+G
Sbjct: 273 LIYVSTISVGTYF 285
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V V G +GFV S LVK LL+ G V N E + D R + ++ ++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVV--DNLLSAEKINVPDHPAVRFS--ETSITDD 90
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAV---MGTLNVLRSCAKVHSIKRV-- 125
S D D VFH A+ Q+ I DP TL L+ ++ KR+
Sbjct: 91 ALLASLQDEYDYVFHLAT-----YHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 126 VLTSSIGAMLLNET 139
V+ S+ G + +T
Sbjct: 146 VVYSAAGCSIAEKT 159
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ V GA+G S +V +RG+ V A VRDP A +RL A L++E
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK-----------AADRLGATVATLVKE 51
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-- 70
+TGA+GF+ ++L++ L + + +R N E + T F +E
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADN----EEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 71 -------GSFDSAVD-----GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK 118
G F+ D D + H + D+ + + V+ V GT++V+R +
Sbjct: 130 SNIEVIVGDFECXDDVVLPENXDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQ 187
Query: 119 VHSIKRVVLTSSIGAML 135
H+ V T S+G
Sbjct: 188 HHARLIYVSTISVGTYF 204
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT--------E 58
+ KV +TG +GF+ S L++ LL+ + V ++ T H R LD
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLK----LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS 81
Query: 59 RLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNV 112
+ ++ ++A G D V H A+ L P++ I DP + G LN+
Sbjct: 82 NFKFIQGDIRNLDDCNNACAGVDYVLHQAA----LGSVPRS-INDPITSNATNIDGFLNM 136
Query: 113 LRSC--AKVHSIKRVVLTSSIG 132
L + AKV S +S+ G
Sbjct: 137 LIAARDAKVQSFTYAASSSTYG 158
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 1 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 51
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43
V V G +GF+ + L +LL RG+ V R P
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE--------------HLRELDGA 56
+ VTG +GF+ S V+ LL Y P+ P E +L +D A
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAY--------PDVPADEVIVLDSLTYAGNRANLAPVD-A 53
Query: 57 TERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADI-VDPAVMGTLNVLRS 115
RL ++ + G + G D + H A+ A + + V GT +L+
Sbjct: 54 DPRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ- 112
Query: 116 CAKVHSIKRVVLTSS 130
CA + RVV S+
Sbjct: 113 CAVDAGVGRVVHVST 127
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE--------------HLRELDGA 56
+ VTG +GF+ S V+ LL Y P+ P E +L +D A
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAY--------PDVPADEVIVLDSLTYAGNRANLAPVD-A 53
Query: 57 TERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADI-VDPAVMGTLNVLRS 115
RL ++ + G + G D + H A+ A + + V GT +L+
Sbjct: 54 DPRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ- 112
Query: 116 CAKVHSIKRVVLTSS 130
CA + RVV S+
Sbjct: 113 CAVDAGVGRVVHVST 127
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA 37
++ V VTGASG V S V LL + GY V A
Sbjct: 146 QDGEVVVTGASGGVGSTAVALLHKLGYQVAA 176
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L G+ V TV D + E E L
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 81
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLRSCAK 118
+++E + D ++H ASP +P +P +GTLN L +
Sbjct: 82 HDVVEPLYIE-----VDQIYHLASPA-----SPPNYXYNPIKTLKTNTIGTLNXLGLAKR 131
Query: 119 VHSIKRVVLTSS 130
V + R++L S+
Sbjct: 132 VGA--RLLLAST 141
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
++ V +TGA+ + + + L +RG TV VRD + R + G E L +L
Sbjct: 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAA-ARTMAGQVEVRELDLQDL 74
Query: 68 LEEGSFDSAVDGCDGVFHTA 87
F V G D + + A
Sbjct: 75 SSVRRFADGVSGADVLINNA 94
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-----EHLRELDGATER-LHLFK 64
V VTG +G++ S V LL+ GY N+ + E LR + T R + +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 65 ANLLEEGSFDSAVDGCD--GVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
++L++G+ V H A + S D + GT+ +L K H
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLL-EIMKAHG 123
Query: 122 IKRVVLTSS 130
+K +V +SS
Sbjct: 124 VKNLVFSSS 132
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE---RLHLFKANL 67
+ VTGASG V S V LL + GY V A E+L+ L GA+ R ++
Sbjct: 171 IVVTGASGGVGSTAVALLHKLGYQVVAV--SGRESTHEYLKSL-GASRVLPRDEFAESRP 227
Query: 68 LEEGSFDSAVD 78
LE+ + A+D
Sbjct: 228 LEKQVWAGAID 238
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-----EHLRELDGATER-LHLFK 64
V VTG +G++ S V LL+ GY N+ + E LR + T R + +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 65 ANLLEEGSFDSAVDGCD--GVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
++L++G+ V H A + S D + GT+ +L K H
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLL-EIMKAHG 123
Query: 122 IKRVVLTSS 130
+K +V +SS
Sbjct: 124 VKNLVFSSS 132
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYT 34
+++ VTG +GF+ S +VK L +G T
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGIT 72
>pdb|2Z2F|A Chain A, X-Ray Crystal Structure Of Bovine Stomach Lysozyme
Length = 129
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 20 VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN---LLEEGSFDSA 76
+A+WL + Y KAT +P+S T++ +F+ N +G +A
Sbjct: 25 LANWLCLTKWESSYNTKATNYNPSSESTDY-----------GIFQINSKWWCNDGKTPNA 73
Query: 77 VDGC 80
VDGC
Sbjct: 74 VDGC 77
>pdb|1KDA|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 LLQRGYTVKATVRDPNSPKTEHLR--ELDGATERLHLFKANLLEEGS 72
L+++G A V DPN+ +HLR E E+L+++ N + G
Sbjct: 103 LVRQGLAKVAYVYDPNNTHEQHLRKSEAQAKKEKLNIWSENDADSGQ 149
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-----EHLRELDGATER-LHLFK 64
V VTG +G++ S V LL+ GY N+ + E LR + T R + +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 65 ANLLEEGSFDSAVDGCD--GVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
++L++G+ V H A + S D + GT+ +L K H
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLL-EIMKAHG 123
Query: 122 IKRVVLTSS 130
+K +V +SS
Sbjct: 124 VKNLVFSSS 132
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmh In Complex With Nad+
Length = 333
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRE 52
K V +TG G + S + +LLL+RG V + + + + EHL++
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKD 64
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYT 34
++ VTG +GF+ S +VK L +G T
Sbjct: 1 MIIVTGGAGFIGSNIVKALNDKGIT 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,293,149
Number of Sequences: 62578
Number of extensions: 201345
Number of successful extensions: 637
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 76
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)