BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030778
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
Length = 411
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 94/145 (64%), Gaps = 11/145 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 231 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 289
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 290 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 347
Query: 151 KYLYPRNKKKVN----KEVSGFSLF 171
L + ++K N V+G S F
Sbjct: 348 LRLSRKARQKTNVFAPDYVAGVSPF 372
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
Length = 412
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 11/145 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 291 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 348
Query: 151 KYLYPRNKKKVN----KEVSGFSLF 171
L + ++K N ++G S F
Sbjct: 349 LRLSQKARQKTNVFAPDYIAGVSPF 373
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
Length = 412
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 89/132 (67%), Gaps = 7/132 (5%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ A+ +L EDQ PQ
Sbjct: 291 KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT--EDQRFPQ 348
Query: 151 KYLYPRNKKKVN 162
L + ++K N
Sbjct: 349 LRLSRKARQKTN 360
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
Length = 413
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 11/145 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 233 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 291
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VTV ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 292 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 349
Query: 151 KYLYPRNKKKVN----KEVSGFSLF 171
L + ++K + V+G S F
Sbjct: 350 LRLSRKARQKTDVFAPDYVAGVSPF 374
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
Length = 410
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 11/145 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 230 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 288
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ A+ +L EDQ PQ
Sbjct: 289 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT--EDQRFPQ 346
Query: 151 KYLYPRNKKKVN----KEVSGFSLF 171
L + ++K N ++G S F
Sbjct: 347 LRLSHKARQKTNVFAPDYIAGVSPF 371
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
Length = 403
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 11/145 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 223 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 281
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQ-LPQ 150
TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ AI +L EDQ PQ
Sbjct: 282 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT--EDQRFPQ 339
Query: 151 KYLYPRNKKKVN----KEVSGFSLF 171
L + ++K + ++G S F
Sbjct: 340 LRLSQKARQKTDVFAPDYIAGVSPF 364
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
Length = 388
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
VAC T D++MQNV+LQ+GL L++ G +I+ + R++L+CH CYT+ ++ + FCP CG G
Sbjct: 218 VACATTDFSMQNVLLQIGLNLVSSDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCG-G 276
Query: 95 GTLRKVAVTVGENG--IVLASRRPRITLRGTKFSLPMPQGGRD--AITKNLILREDQ 147
TL K ++ G V + RGTK+SLP P G KN +LREDQ
Sbjct: 277 NTLIKTTCSINSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQ 333
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
Length = 459
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 20/136 (14%)
Query: 32 ESTVACITGDYAMQNVILQMGLRLLA-PGGMQIRQLHRWILKCHACYTI--TAEIG--RI 86
E+ VA TGD+A+QNV LQM L L+ G++I+++ ++L+CHAC+ I + G +
Sbjct: 262 ENQVALATGDFAVQNVALQMNLNLMNFMSGLKIKRIRNYMLRCHACFKIFPLPKDGKPKH 321
Query: 87 FCPKCGNGGTLRKVAVTV-GENGIVLASRRPRITL--RGTKFSLPMP--------QGGRD 135
FC CG GTL + AV+V G V + RG ++S+ P G +
Sbjct: 322 FCASCGGQGTLLRCAVSVDSRTGNVTPHLKSNFQWNNRGNRYSVASPLSKNSQKRYGKKG 381
Query: 136 AI----TKNLILREDQ 147
+ +N+ILREDQ
Sbjct: 382 HVHSKPQENVILREDQ 397
>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=vapC8 PE=3 SV=1
Length = 166
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHAC-YTITAEIGRIFCPKCGN 93
V +T DYA+QNV + +G+R QI + +W+ C C I +EI CP CG+
Sbjct: 95 VVLVTDDYAIQNVAMSLGIRFDGILHRQISKEFKWVKVCRGCGRRIESEI----CPVCGS 150
Query: 94 GGTLRKV 100
+R+V
Sbjct: 151 EAIIRRV 157
>sp|Q05DH4|F16A1_HUMAN Protein FAM160A1 OS=Homo sapiens GN=FAM160A1 PE=2 SV=2
Length = 1040
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 45 QNVILQMGLRLLAP-GGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVT 103
++V+LQ+ LR L P M + Q RW +K CY+++A P C + G + +T
Sbjct: 400 EDVMLQLVLRYLIPCNHMMLSQ--RWAVKERDCYSVSAAKLLALTPVCCSSG----ITLT 453
Query: 104 VG--ENGIVLASR 114
+G E +L S+
Sbjct: 454 LGNQERDYILWSK 466
>sp|Q6Q6R3|CRIP3_MOUSE Cysteine-rich protein 3 OS=Mus musculus GN=Crip3 PE=2 SV=1
Length = 243
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 64 RQLHRWILKCHACYTITA------EIGRIFCPKCGNGGTLRKVAVTVGENGIVL-----A 112
+ HR+ LKC C++I + GR +C K G V +G G L
Sbjct: 23 KNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGPRGVNIGGVGCYLYNLPTP 82
Query: 113 SRRPRITLRGTKFSLPMPQGG 133
RI+L + FS P P+ G
Sbjct: 83 PPASRISLSPSNFSPPRPRTG 103
>sp|O27890|VAPC2_METTH Putative ribonuclease VapC2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=vapC2 PE=3 SV=1
Length = 171
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 5 SKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNV--ILQMGLRLLAPGGMQ 62
S++ +I+ +S D E + LR + TV IT DY +QN IL +G R + G
Sbjct: 75 SESGDIMRLSPTDMEVIGLAVSLRGKDDVTV--ITDDYTIQNTLKILGIGFRSVLTSG-- 130
Query: 63 IRQLHRWILKCHAC---YTITAEIGRIFCPKCGN 93
IR + W C C Y + E C CG+
Sbjct: 131 IRDTYSWRRVCTGCRRVYPLDYEFEE--CEICGS 162
>sp|P57674|VAPC1_THEAC Putative ribonuclease VapC1 OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=vapC1 PE=3 SV=1
Length = 194
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 2 EISSKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGGM 61
E ++K +++++S D + +L + +T DY++QNV + L L
Sbjct: 94 ETAAKTGDLMNLSQTDKD------VLALALQYDATIVTDDYSIQNVASYLNLGFLNANIK 147
Query: 62 QIRQLHRWILKCHACYTITAEIGRIFCPKCGN 93
+I + WI +C C + ++ C CG+
Sbjct: 148 RIDKQIAWIYRCTGCKKVFPGPVKV-CDICGH 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,297,863
Number of Sequences: 539616
Number of extensions: 2490410
Number of successful extensions: 5127
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5101
Number of HSP's gapped (non-prelim): 14
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)