Query 030778
Match_columns 171
No_of_seqs 158 out of 302
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2con_A RUH-035 protein, NIN on 100.0 4.3E-35 1.5E-39 211.6 5.3 75 57-132 2-79 (79)
2 2lcq_A Putative toxin VAPC6; P 99.7 1.2E-17 4.2E-22 131.0 4.2 67 32-101 95-162 (165)
3 3irb_A Uncharacterized protein 96.6 0.0011 3.8E-08 51.3 3.1 41 67-111 44-85 (145)
4 2gnr_A Conserved hypothetical 96.5 0.0015 5E-08 50.8 3.0 41 67-111 44-85 (145)
5 2kdx_A HYPA, hydrogenase/ureas 95.5 0.011 3.7E-07 43.9 3.7 31 67-98 70-102 (119)
6 2apo_B Ribosome biogenesis pro 94.5 0.013 4.6E-07 39.8 1.6 26 69-98 5-30 (60)
7 2aus_D NOP10, ribosome biogene 94.5 0.016 5.6E-07 39.4 2.0 26 69-98 4-29 (60)
8 3i8o_A KH domain-containing pr 93.9 0.034 1.2E-06 43.3 2.9 29 32-60 104-132 (142)
9 3a43_A HYPD, hydrogenase nicke 93.5 0.054 1.9E-06 41.5 3.5 31 67-98 67-119 (139)
10 1twf_L ABC10-alpha, DNA-direct 93.0 0.037 1.3E-06 38.4 1.7 32 67-99 25-58 (70)
11 3pwf_A Rubrerythrin; non heme 92.7 0.053 1.8E-06 42.9 2.4 24 71-94 139-162 (170)
12 6rxn_A Rubredoxin; electron tr 92.5 0.051 1.8E-06 34.9 1.7 24 71-94 5-39 (46)
13 4ayb_P DNA-directed RNA polyme 92.3 0.05 1.7E-06 35.5 1.5 31 70-101 3-38 (48)
14 3ix7_A Uncharacterized protein 92.2 0.053 1.8E-06 41.7 1.7 28 32-59 96-123 (134)
15 1lko_A Rubrerythrin all-iron(I 90.6 0.19 6.6E-06 40.0 3.6 27 68-94 153-180 (191)
16 1yuz_A Nigerythrin; rubrythrin 90.1 0.15 5E-06 41.2 2.5 25 70-94 171-195 (202)
17 4rxn_A Rubredoxin; electron tr 88.5 0.2 7E-06 33.1 1.8 25 70-94 3-45 (54)
18 3na7_A HP0958; flagellar bioge 88.1 0.17 5.7E-06 41.8 1.5 33 51-93 189-230 (256)
19 1yk4_A Rubredoxin, RD; electro 87.8 0.31 1.1E-05 31.8 2.4 25 70-94 2-44 (52)
20 1qxf_A GR2, 30S ribosomal prot 87.8 0.26 8.8E-06 34.1 2.0 25 70-94 7-35 (66)
21 1e8j_A Rubredoxin; iron-sulfur 87.6 0.3 1E-05 31.9 2.2 25 70-94 3-45 (52)
22 3cng_A Nudix hydrolase; struct 86.4 0.78 2.7E-05 35.0 4.4 56 72-128 5-70 (189)
23 2jrp_A Putative cytoplasmic pr 86.4 0.4 1.4E-05 34.3 2.5 27 70-100 18-44 (81)
24 1vk6_A NADH pyrophosphatase; 1 86.2 0.35 1.2E-05 40.3 2.4 56 71-129 108-170 (269)
25 1s24_A Rubredoxin 2; electron 85.2 0.47 1.6E-05 34.3 2.3 25 70-94 35-77 (87)
26 2gmg_A Hypothetical protein PF 84.7 0.39 1.3E-05 35.9 1.8 34 65-99 62-97 (105)
27 2v3b_B Rubredoxin 2, rubredoxi 84.7 0.55 1.9E-05 30.9 2.3 25 70-94 3-45 (55)
28 3j20_Y 30S ribosomal protein S 83.7 0.47 1.6E-05 30.6 1.6 9 85-93 37-45 (50)
29 2kn9_A Rubredoxin; metalloprot 83.4 0.62 2.1E-05 33.2 2.3 25 70-94 27-69 (81)
30 3h0g_L DNA-directed RNA polyme 82.8 0.39 1.3E-05 32.8 1.0 31 68-99 19-51 (63)
31 1dx8_A Rubredoxin; electron tr 82.5 0.58 2E-05 32.3 1.8 25 70-94 7-49 (70)
32 3bbo_3 Ribosomal protein L33; 82.1 0.64 2.2E-05 31.9 1.9 14 85-99 49-62 (66)
33 1ryq_A DNA-directed RNA polyme 80.5 1 3.6E-05 31.2 2.5 23 69-94 10-32 (69)
34 3iz6_X 40S ribosomal protein S 79.5 1.4 4.9E-05 31.8 3.1 24 71-94 37-64 (86)
35 2k4x_A 30S ribosomal protein S 79.0 0.72 2.5E-05 30.3 1.3 9 86-94 19-27 (55)
36 3p8b_A DNA-directed RNA polyme 78.8 1.2 4.1E-05 31.9 2.4 33 71-112 24-56 (81)
37 1m2k_A Silent information regu 76.8 1.7 5.8E-05 35.6 3.2 27 68-94 119-151 (249)
38 3j21_g 50S ribosomal protein L 76.6 2 6.8E-05 28.1 2.9 33 65-99 9-41 (51)
39 3v2d_6 50S ribosomal protein L 76.1 1.2 4.1E-05 29.4 1.7 31 68-99 8-50 (54)
40 3r8s_1 50S ribosomal protein L 74.1 1.7 5.7E-05 28.2 2.0 31 68-99 5-47 (50)
41 1k81_A EIF-2-beta, probable tr 73.2 0.86 3E-05 27.5 0.4 24 58-81 9-32 (36)
42 2zjr_1 50S ribosomal protein L 72.4 1.7 5.9E-05 28.6 1.8 31 68-99 9-51 (55)
43 1q14_A HST2 protein; histone d 71.2 1.7 5.8E-05 38.0 2.0 27 68-94 142-180 (361)
44 1yc5_A NAD-dependent deacetyla 71.0 1.9 6.4E-05 35.2 2.1 27 68-94 119-154 (246)
45 3ir9_A Peptide chain release f 71.0 4.1 0.00014 31.7 4.0 28 67-94 75-112 (166)
46 1ma3_A SIR2-AF2, transcription 70.4 2.8 9.6E-05 34.4 3.0 26 68-93 121-155 (253)
47 1gh9_A 8.3 kDa protein (gene M 69.9 1.8 6.2E-05 29.9 1.5 24 69-94 3-29 (71)
48 1q1a_A HST2 protein; ternary c 69.5 2.8 9.4E-05 35.1 2.8 27 68-94 134-172 (289)
49 1ffk_W Ribosomal protein L37AE 68.7 3 0.0001 29.1 2.4 20 84-104 26-45 (73)
50 2zjr_Z 50S ribosomal protein L 67.8 2.4 8.2E-05 28.3 1.7 21 71-93 31-51 (60)
51 1h7b_A Anaerobic ribonucleotid 67.1 1.3 4.4E-05 41.4 0.3 25 70-94 540-567 (605)
52 3u31_A SIR2A, transcriptional 66.9 3.4 0.00012 35.0 2.9 28 68-98 152-192 (290)
53 3j21_i 50S ribosomal protein L 66.3 2 6.7E-05 30.8 1.1 17 85-102 35-51 (83)
54 3axs_A Probable N(2),N(2)-dime 65.9 3.4 0.00012 36.2 2.8 28 67-94 241-272 (392)
55 1vq8_1 50S ribosomal protein L 65.7 2.7 9.2E-05 28.2 1.6 25 70-94 17-42 (57)
56 2dok_A Telomerase-binding prot 65.2 3.7 0.00013 31.8 2.6 27 33-59 151-177 (186)
57 2jne_A Hypothetical protein YF 65.2 4 0.00014 30.3 2.6 42 71-116 49-95 (101)
58 3ga8_A HTH-type transcriptiona 65.0 5.5 0.00019 26.9 3.2 31 140-170 44-77 (78)
59 3iz5_m 60S ribosomal protein L 63.9 2.1 7.3E-05 31.2 0.9 17 85-102 36-52 (92)
60 3glr_A NAD-dependent deacetyla 63.4 4.4 0.00015 34.3 2.9 27 68-94 137-172 (285)
61 3f2b_A DNA-directed DNA polyme 62.8 3.7 0.00013 40.8 2.6 28 70-99 502-539 (1041)
62 1nkw_1 50S ribosomal protein L 62.2 3.6 0.00012 29.4 1.8 31 68-99 36-78 (82)
63 3j20_W 30S ribosomal protein S 62.2 4.6 0.00016 27.5 2.3 26 69-94 14-43 (63)
64 1pft_A TFIIB, PFTFIIBN; N-term 61.9 1.8 6.1E-05 27.0 0.2 7 87-93 7-13 (50)
65 3izc_m 60S ribosomal protein R 61.3 2.5 8.5E-05 30.8 0.9 18 84-102 35-52 (92)
66 3j21_e 50S ribosomal protein L 59.7 3.5 0.00012 28.1 1.4 24 71-94 18-42 (62)
67 3cc2_Z 50S ribosomal protein L 59.6 2.7 9.1E-05 31.9 0.8 18 84-102 59-76 (116)
68 2fiy_A Protein FDHE homolog; F 59.4 4.9 0.00017 34.5 2.5 15 84-98 181-195 (309)
69 3iz5_l 60S ribosomal protein L 59.3 3.7 0.00013 30.0 1.5 25 70-94 16-40 (94)
70 3m7n_A Putative uncharacterize 59.3 2.1 7.3E-05 33.5 0.2 36 65-101 135-171 (179)
71 1twf_I B12.6, DNA-directed RNA 58.9 3.3 0.00011 30.7 1.2 10 85-94 4-13 (122)
72 1l8d_A DNA double-strand break 58.8 2.4 8.2E-05 30.2 0.4 10 85-94 47-56 (112)
73 4a18_A RPL37, ribosomal protei 58.4 3.6 0.00012 30.1 1.3 25 70-94 16-40 (94)
74 1z60_A TFIIH basal transcripti 58.4 3.3 0.00011 27.6 1.0 23 72-94 17-39 (59)
75 2kwq_A Protein MCM10 homolog; 58.0 6.2 0.00021 28.6 2.5 30 71-102 49-81 (92)
76 3h0g_I DNA-directed RNA polyme 57.0 3.3 0.00011 30.4 0.9 10 85-94 4-13 (113)
77 2zkr_2 60S ribosomal protein L 55.9 5.1 0.00017 29.5 1.8 26 69-94 15-40 (97)
78 3v2d_5 50S ribosomal protein L 55.9 5.1 0.00018 26.7 1.7 22 70-93 30-51 (60)
79 4a17_Y RPL37A, 60S ribosomal p 55.8 2.6 9E-05 31.3 0.2 17 85-102 36-52 (103)
80 3qt1_I DNA-directed RNA polyme 55.7 3.4 0.00012 31.4 0.9 10 85-94 24-33 (133)
81 3u5c_b RP61, YS20, 40S ribosom 55.1 5.9 0.0002 28.3 1.9 26 69-94 33-62 (82)
82 3jyw_9 60S ribosomal protein L 54.5 2.3 7.7E-05 29.7 -0.3 17 85-102 26-42 (72)
83 3bvo_A CO-chaperone protein HS 54.4 5.7 0.00019 32.0 2.0 23 71-93 11-35 (207)
84 2xzm_6 RPS27E; ribosome, trans 53.6 6 0.0002 28.2 1.8 25 70-94 32-60 (81)
85 3j21_j 50S ribosomal protein L 53.1 5.3 0.00018 29.1 1.5 18 85-103 8-25 (94)
86 2k2d_A Ring finger and CHY zin 52.6 9.3 0.00032 26.6 2.6 27 70-96 37-66 (79)
87 3lpe_B DNA-directed RNA polyme 52.3 6.2 0.00021 26.3 1.6 21 71-94 2-22 (59)
88 2ftc_P Mitochondrial ribosomal 51.2 5 0.00017 26.0 0.9 31 68-99 9-49 (52)
89 1dl6_A Transcription factor II 50.8 3.6 0.00012 26.9 0.2 9 85-93 30-38 (58)
90 1vq8_3 50S ribosomal protein L 50.0 4.9 0.00017 29.3 0.8 18 85-103 8-25 (92)
91 1j8f_A SIRT2, sirtuin 2, isofo 49.2 11 0.00037 32.2 3.1 27 68-94 157-194 (323)
92 1o4w_A PIN (PILT N-terminus) d 48.5 16 0.00055 26.8 3.6 30 33-62 110-139 (147)
93 3u50_C Telomerase-associated p 48.3 8 0.00027 30.6 1.9 43 68-110 40-88 (172)
94 1nee_A EIF-2-beta, probable tr 47.4 6.3 0.00022 30.3 1.2 24 57-80 110-133 (138)
95 1s5p_A NAD-dependent deacetyla 47.1 8.8 0.0003 31.0 2.0 27 68-94 111-143 (235)
96 3e20_C Eukaryotic peptide chai 46.0 5.1 0.00018 35.8 0.5 29 66-94 333-372 (441)
97 4a18_C 60S ribosomal protein L 45.9 6.1 0.00021 29.5 0.8 18 85-103 9-26 (109)
98 3o9x_A Uncharacterized HTH-typ 45.3 15 0.00052 26.1 2.9 12 86-98 3-14 (133)
99 3fac_A Putative uncharacterize 44.5 6.1 0.00021 28.4 0.6 12 83-94 65-76 (118)
100 2fiy_A Protein FDHE homolog; F 43.4 10 0.00034 32.5 1.9 27 70-97 208-234 (309)
101 1vq8_Z 50S ribosomal protein L 42.3 10 0.00035 26.7 1.5 16 85-101 27-42 (83)
102 1dxg_A Desulforedoxin; non-hem 39.3 23 0.00078 20.8 2.5 20 86-110 7-26 (36)
103 4esj_A Type-2 restriction enzy 39.1 11 0.00037 32.0 1.4 13 86-99 35-47 (257)
104 3vth_A Hydrogenase maturation 38.8 5.7 0.00019 38.0 -0.4 23 72-94 163-192 (761)
105 3riy_A NAD-dependent deacetyla 38.2 18 0.00061 30.0 2.6 14 68-81 132-145 (273)
106 2hf1_A Tetraacyldisaccharide-1 38.1 9 0.00031 26.0 0.6 9 86-94 9-17 (68)
107 2hjh_A NAD-dependent histone d 37.8 15 0.0005 31.7 2.1 26 68-93 159-193 (354)
108 2d74_B Translation initiation 37.0 7.1 0.00024 30.4 -0.0 8 87-94 127-134 (148)
109 2epq_A POZ-, at HOOK-, and zin 36.7 13 0.00045 20.8 1.1 11 71-81 11-21 (45)
110 2e9h_A EIF-5, eukaryotic trans 36.7 13 0.00044 29.2 1.4 24 57-80 111-136 (157)
111 3vk6_A E3 ubiquitin-protein li 35.2 8.1 0.00028 28.5 0.0 31 71-103 23-53 (101)
112 1x6m_A GFA, glutathione-depend 34.5 12 0.0004 29.5 0.9 11 84-94 97-107 (196)
113 3p2a_A Thioredoxin 2, putative 33.8 20 0.00067 25.3 1.9 28 70-98 5-37 (148)
114 2jr6_A UPF0434 protein NMA0874 33.8 9.2 0.00032 25.9 0.1 10 85-94 8-17 (68)
115 2js4_A UPF0434 protein BB2007; 33.5 9.1 0.00031 26.1 0.1 10 85-94 8-17 (70)
116 2x5c_A Hypothetical protein OR 33.4 48 0.0016 24.6 4.0 21 87-110 54-74 (131)
117 1vd4_A Transcription initiatio 33.2 13 0.00044 22.9 0.8 25 70-94 14-48 (62)
118 2owo_A DNA ligase; protein-DNA 33.2 24 0.00083 33.3 2.9 49 48-99 364-417 (671)
119 1weo_A Cellulose synthase, cat 32.8 6.1 0.00021 28.9 -1.0 23 72-94 45-67 (93)
120 2jny_A Uncharacterized BCR; st 32.5 9.7 0.00033 25.8 0.1 10 85-94 10-19 (67)
121 1r8o_B STI, kunitz trypsin inh 31.9 39 0.0013 23.0 3.1 24 84-110 30-53 (71)
122 1ltl_A DNA replication initiat 31.4 44 0.0015 27.4 4.0 30 65-94 129-165 (279)
123 1qyp_A RNA polymerase II; tran 31.3 27 0.00091 22.1 2.1 19 85-104 15-33 (57)
124 2akl_A PHNA-like protein PA012 31.0 15 0.00053 28.4 1.0 24 71-94 28-53 (138)
125 2nn6_I 3'-5' exoribonuclease C 31.0 12 0.00042 30.0 0.5 31 71-102 170-201 (209)
126 3flo_B DNA polymerase alpha ca 30.9 22 0.00075 28.8 2.0 36 59-94 11-58 (206)
127 2a20_A Regulating synaptic mem 29.9 11 0.00036 25.7 -0.1 11 84-94 32-42 (62)
128 2g2k_A EIF-5, eukaryotic trans 29.7 16 0.00055 29.1 0.9 13 66-78 115-127 (170)
129 3qqc_A DNA-directed RNA polyme 29.7 48 0.0016 29.6 4.1 35 68-102 3-40 (436)
130 2k1p_A Zinc finger RAN-binding 29.3 33 0.0011 19.9 2.0 22 72-94 8-29 (33)
131 4iao_A NAD-dependent histone d 28.8 23 0.00078 32.5 1.9 24 69-92 298-330 (492)
132 1wff_A Riken cDNA 2810002D23 p 28.4 22 0.00076 25.3 1.4 27 67-94 22-48 (85)
133 3cw2_K Translation initiation 27.7 5.8 0.0002 30.5 -1.9 23 72-94 105-133 (139)
134 1joc_A EEA1, early endosomal a 26.7 28 0.00095 25.7 1.7 46 40-93 42-93 (125)
135 1ee8_A MUTM (FPG) protein; bet 26.7 30 0.001 28.6 2.1 14 86-101 236-249 (266)
136 4g9i_A Hydrogenase maturation 26.2 12 0.0004 35.9 -0.6 34 71-110 157-197 (772)
137 1vfy_A Phosphatidylinositol-3- 26.0 31 0.001 23.0 1.7 22 72-93 13-35 (73)
138 2lk0_A RNA-binding protein 5; 25.9 38 0.0013 19.4 1.9 22 72-94 7-28 (32)
139 1dvp_A HRS, hepatocyte growth 25.9 28 0.00096 27.5 1.7 23 71-93 162-185 (220)
140 2ayj_A 50S ribosomal protein L 25.9 41 0.0014 22.3 2.2 28 69-98 18-45 (56)
141 3ttc_A HYPF, transcriptional r 25.8 12 0.0004 35.4 -0.6 23 72-94 69-98 (657)
142 1tfi_A Transcriptional elongat 25.7 23 0.00077 22.5 0.9 10 85-94 9-18 (50)
143 2pk7_A Uncharacterized protein 25.3 18 0.00061 24.5 0.4 10 85-94 8-17 (69)
144 2yw8_A RUN and FYVE domain-con 25.1 32 0.0011 23.4 1.7 23 71-93 20-43 (82)
145 2k5c_A Uncharacterized protein 24.4 21 0.00071 25.8 0.6 8 87-94 10-17 (95)
146 1k82_A Formamidopyrimidine-DNA 24.3 32 0.0011 28.4 1.9 16 85-102 240-255 (268)
147 1k3x_A Endonuclease VIII; hydr 24.3 32 0.0011 28.3 1.9 16 85-102 234-249 (262)
148 2xzf_A Formamidopyrimidine-DNA 24.3 32 0.0011 28.4 1.9 15 86-102 243-257 (271)
149 3zyq_A Hepatocyte growth facto 24.0 31 0.0011 27.6 1.7 50 44-93 132-188 (226)
150 3u6p_A Formamidopyrimidine-DNA 24.0 33 0.0011 28.5 1.9 16 85-102 245-260 (273)
151 3t7l_A Zinc finger FYVE domain 23.6 36 0.0012 23.6 1.7 23 71-93 21-44 (90)
152 4bbr_M Transcription initiatio 23.2 21 0.0007 30.6 0.5 25 70-94 21-51 (345)
153 2kn0_A FN14; tweak, TNF recept 23.0 52 0.0018 22.4 2.3 22 71-96 19-40 (66)
154 3h7h_A Transcription elongatio 23.0 21 0.00071 26.9 0.4 25 69-93 15-41 (120)
155 2qjt_B Nicotinamide-nucleotide 22.8 18 0.00063 29.5 0.1 31 98-129 209-239 (352)
156 3f2g_A Alkylmercury lyase; MER 22.7 77 0.0026 25.9 3.8 35 86-131 115-149 (220)
157 2cr8_A MDM4 protein; ZF-ranbp 22.5 43 0.0015 22.0 1.8 22 71-93 12-33 (53)
158 4gop_C Putative uncharacterize 22.5 41 0.0014 29.2 2.3 43 68-110 306-357 (444)
159 3gmt_A Adenylate kinase; ssgci 22.4 41 0.0014 27.3 2.1 29 70-99 131-164 (230)
160 1z2q_A LM5-1; membrane protein 22.0 40 0.0014 22.9 1.7 23 71-93 22-45 (84)
161 2c2l_A CHIP, carboxy terminus 21.7 18 0.00062 28.4 -0.2 9 86-94 244-252 (281)
162 1y02_A CARP2, FYVE-ring finger 21.7 37 0.0013 25.3 1.5 24 70-93 19-43 (120)
163 3iz5_r 60S ribosomal protein L 21.3 44 0.0015 24.6 1.9 18 85-103 9-28 (105)
164 1x4u_A Zinc finger, FYVE domai 20.2 48 0.0017 22.5 1.8 22 72-93 16-38 (84)
165 1x6e_A Zinc finger protein 24; 20.2 57 0.002 19.9 2.1 25 70-94 14-51 (72)
166 3k1f_M Transcription initiatio 20.0 23 0.00078 28.9 0.1 25 70-94 21-51 (197)
No 1
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=100.00 E-value=4.3e-35 Score=211.61 Aligned_cols=75 Identities=35% Similarity=0.821 Sum_probs=71.4
Q ss_pred cCCCCcceeeeeEEEEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEEecc--Ccc-cccccceeecCCCCC
Q 030778 57 APGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLASR--RPR-ITLRGTKFSLPMPQG 132 (171)
Q Consensus 57 s~~g~~I~~~k~wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsvsv~~~G~~~~~~--~~~-~n~RG~~ySlPkpkg 132 (171)
+++|++|+++++|+|||||||+++++|+++|||+|||+ ||+||+|+||+||++++|+ +++ ||+||++||||+|+|
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~-TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPkpkG 79 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNK-TLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGPSSG 79 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEESCSSCCSCSSSCCS-CCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCceEeeeeeeeeeEecccceECCCcccccccccCcc-cceEEEEEECCCCcEEEeccCCccccccCCCCccCCCCCC
Confidence 68999999999999999999999999999999999998 9999999999999988775 578 999999999999997
No 2
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.68 E-value=1.2e-17 Score=131.03 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=59.8
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCCCCcceeeeeEEEEccCccccccccC-ccccCCCCCCCceeEEE
Q 030778 32 ESTVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIG-RIFCPKCGNGGTLRKVA 101 (171)
Q Consensus 32 ~~~va~~TdDyAmQNVllqlGL~~~s~~g~~I~~~k~wvlrC~~C~k~~~~~~-k~fCp~CG~~~TL~Rvs 101 (171)
+.++.++|+||++||||.++||+++++. .+|++++.|.|+|++||+.|+... ..|||.||++ ++|+.
T Consensus 95 ~l~~~lvT~D~~l~~vA~~~Gv~v~~~~-~~i~~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~--~~~~~ 162 (165)
T 2lcq_A 95 ELKGEIFSDDYNVQNIASLLGLRFRTLK-RGIKKVIKWRYVCIGCGRKFSTLPPGGVCPDCGSK--VKLIP 162 (165)
T ss_dssp HHTCCEECCCHHHHHHHHHTTCCEECCS-CCCSSCCCCCEEESSSCCEESSCCGGGBCTTTCCB--EEECC
T ss_pred HhCCeEEcCcHHHHHHHHHCCCeEEchh-hhccccccEEEECCCCCCcccCCCCCCcCCCCCCc--ceeCC
Confidence 4567999999999999999999999998 889999999999999999998543 5799999997 77653
No 3
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.0011 Score=51.25 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=31.2
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCceeEEEEEeC-CCceEE
Q 030778 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVG-ENGIVL 111 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsvsv~-~~G~~~ 111 (171)
+-...||..|++++.. .+.+||.||+. .+.-+. +. ..|++.
T Consensus 44 rL~~~rC~~CG~~~~P-Pr~~Cp~C~s~-~~~~ve--~s~G~GtV~ 85 (145)
T 3irb_A 44 KIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVE--INKDEAYVD 85 (145)
T ss_dssp CCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEE--CCGGGCEEE
T ss_pred eEEEEEeCCCCcEEcC-chhhCcCCCCC-ceeeee--ecCCceEEE
Confidence 4677899999998875 47899999997 777665 33 247653
No 4
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=96.48 E-value=0.0015 Score=50.83 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=31.9
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCceeEEEEEeC-CCceEE
Q 030778 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVG-ENGIVL 111 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsvsv~-~~G~~~ 111 (171)
+-...||..|++++.. .+.+||.||+. .+.-+. +. ..|++.
T Consensus 44 ~L~~~rC~~CG~~~fP-Pr~~Cp~C~s~-~~e~v~--ls~g~GtV~ 85 (145)
T 2gnr_A 44 KIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVE--INKDEAYVD 85 (145)
T ss_dssp CCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEE--CCGGGCEEE
T ss_pred EEEEEEECCCCcEEeC-CCCCCCCCCCC-ccEEEE--ccCCcEEEE
Confidence 4567899999998765 47899999997 787666 55 567763
No 5
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=95.52 E-value=0.011 Score=43.90 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=23.0
Q ss_pred eeEEEEccCccccccccC-cc-ccCCCCCCCcee
Q 030778 67 HRWILKCHACYTITAEIG-RI-FCPKCGNGGTLR 98 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~~~-k~-fCp~CG~~~TL~ 98 (171)
..-.++|..|+..+.... .. .||.||++ .++
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~-~~~ 102 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSK-NVI 102 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSC-CCE
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCC-CcE
Confidence 345799999999876433 34 59999998 444
No 6
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=94.54 E-value=0.013 Score=39.82 Aligned_cols=26 Identities=38% Similarity=0.793 Sum_probs=20.6
Q ss_pred EEEEccCccccccccCccccCCCCCCCcee
Q 030778 69 WILKCHACYTITAEIGRIFCPKCGNGGTLR 98 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~ 98 (171)
-+.+|..|+..+- +..||.||.+ |..
T Consensus 5 ~mr~C~~CgvYTL---k~~CP~CG~~-T~~ 30 (60)
T 2apo_B 5 RMKKCPKCGLYTL---KEICPKCGEK-TVI 30 (60)
T ss_dssp CCEECTTTCCEES---SSBCSSSCSB-CBC
T ss_pred hceeCCCCCCEec---cccCcCCCCc-CCC
Confidence 3568999998765 6789999998 644
No 7
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=94.50 E-value=0.016 Score=39.42 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEEEccCccccccccCccccCCCCCCCcee
Q 030778 69 WILKCHACYTITAEIGRIFCPKCGNGGTLR 98 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~ 98 (171)
-+.+|.+|+..+- +..||.||.+ |..
T Consensus 4 ~mr~C~~Cg~YTL---k~~CP~CG~~-t~~ 29 (60)
T 2aus_D 4 RIRKCPKCGRYTL---KETCPVCGEK-TKV 29 (60)
T ss_dssp CCEECTTTCCEES---SSBCTTTCSB-CEE
T ss_pred cceECCCCCCEEc---cccCcCCCCc-cCC
Confidence 3568999998765 5789999998 643
No 8
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=93.87 E-value=0.034 Score=43.35 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.1
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCCC
Q 030778 32 ESTVACITGDYAMQNVILQMGLRLLAPGG 60 (171)
Q Consensus 32 ~~~va~~TdDyAmQNVllqlGL~~~s~~g 60 (171)
+..+.++|+||.+++||..+|++++.+..
T Consensus 104 ~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 104 ETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 46789999999999999999999988764
No 9
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=93.51 E-value=0.054 Score=41.51 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=22.3
Q ss_pred eeEEEEccCccccccccC----------------------ccccCCCCCCCcee
Q 030778 67 HRWILKCHACYTITAEIG----------------------RIFCPKCGNGGTLR 98 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~~~----------------------k~fCp~CG~~~TL~ 98 (171)
..-+.+|..|+..+.... ..-||.||++ .+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~-~~~ 119 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH-DFE 119 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC-CEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC-ccE
Confidence 345789999998875432 3559999998 443
No 10
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=93.03 E-value=0.037 Score=38.42 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=24.1
Q ss_pred eeEEEEccCccccccc--cCccccCCCCCCCceeE
Q 030778 67 HRWILKCHACYTITAE--IGRIFCPKCGNGGTLRK 99 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~--~~k~fCp~CG~~~TL~R 99 (171)
....|+|..|+..+.. .....||.||++ .|-+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~R-ILyK 58 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHR-ILLK 58 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCC-CCBC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCce-EeEe
Confidence 4678999999987433 345789999997 5543
No 11
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=92.74 E-value=0.053 Score=42.87 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=18.8
Q ss_pred EEccCccccccccCccccCCCCCC
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
++|.-|+.++....-..||+||.+
T Consensus 139 ~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEESCCCSBCTTTCCB
T ss_pred eEeCCCCCeeCCCCCCCCCCCCCC
Confidence 459999998764334689999976
No 12
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=92.50 E-value=0.051 Score=34.94 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEccCccccccc----------cC-ccccCCCCCC
Q 030778 71 LKCHACYTITAE----------IG-RIFCPKCGNG 94 (171)
Q Consensus 71 lrC~~C~k~~~~----------~~-k~fCp~CG~~ 94 (171)
++|..|+.++.. .. .-.||.||.+
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 599999999863 11 1279999975
No 13
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=92.31 E-value=0.05 Score=35.54 Aligned_cols=31 Identities=23% Similarity=0.697 Sum_probs=22.2
Q ss_pred EEEccCccccccc-----cCccccCCCCCCCceeEEE
Q 030778 70 ILKCHACYTITAE-----IGRIFCPKCGNGGTLRKVA 101 (171)
Q Consensus 70 vlrC~~C~k~~~~-----~~k~fCp~CG~~~TL~Rvs 101 (171)
+|+|-.|++.++. ++..-||.||.+ -+.+|.
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr-ii~KvR 38 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK-IIFMVR 38 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCS-CEECCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcE-EEEEec
Confidence 5899999998864 345679999998 665543
No 14
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=92.15 E-value=0.053 Score=41.71 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.0
Q ss_pred CceeeEecchHHHHHHHHHhCceeecCC
Q 030778 32 ESTVACITGDYAMQNVILQMGLRLLAPG 59 (171)
Q Consensus 32 ~~~va~~TdDyAmQNVllqlGL~~~s~~ 59 (171)
+..+.++|.||.+++||..+|++++.++
T Consensus 96 ~~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 96 DLEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred HhCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 4678999999999999999999998654
No 15
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=90.63 E-value=0.19 Score=39.95 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=20.1
Q ss_pred eEEEEccCccccccc-cCccccCCCCCC
Q 030778 68 RWILKCHACYTITAE-IGRIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~-~~k~fCp~CG~~ 94 (171)
.-+++|.-|+.++.. ..-..||.||.+
T Consensus 153 ~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred CceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 336889999998753 123489999986
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=90.12 E-value=0.15 Score=41.23 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
+++|.-|+.++....-..||.||.+
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 6789999998764334689999986
No 17
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=88.51 E-value=0.2 Score=33.11 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=18.4
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 030778 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~-----------------~-k~fCp~CG~~ 94 (171)
+++|..|+-+|... . .-.||.||.+
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 36999999998642 1 1269999975
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.07 E-value=0.17 Score=41.78 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=22.4
Q ss_pred hCceeecCCCCcceeeeeEEEEccCccccccc---------cCccccCCCCC
Q 030778 51 MGLRLLAPGGMQIRQLHRWILKCHACYTITAE---------IGRIFCPKCGN 93 (171)
Q Consensus 51 lGL~~~s~~g~~I~~~k~wvlrC~~C~k~~~~---------~~k~fCp~CG~ 93 (171)
-|+-++++.+. +|.|||-.-++ -...+||+||-
T Consensus 189 ~g~avv~v~~~----------~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgR 230 (256)
T 3na7_A 189 KNTSIVTIKKQ----------ACGGCFIRLNDKIYTEVLTSGDMITCPYCGR 230 (256)
T ss_dssp GGGSEEECBTT----------BCTTTCCBCCHHHHHHHHHSSSCEECTTTCC
T ss_pred CCceEEEeeCC----------ccCCCCeeeCHHHHHHHHCCCCEEECCCCCe
Confidence 46666666543 89999954432 12479999996
No 19
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=87.82 E-value=0.31 Score=31.78 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=18.6
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 030778 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~-----------------~-k~fCp~CG~~ 94 (171)
+++|..|+-+|... . .-.||.||.+
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 47999999998641 1 1269999975
No 20
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=87.78 E-value=0.26 Score=34.12 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=17.1
Q ss_pred EEEccCccccccc----cCccccCCCCCC
Q 030778 70 ILKCHACYTITAE----IGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~----~~k~fCp~CG~~ 94 (171)
.-+|++|+++.-. .+...|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCE
Confidence 4579999876532 235788888874
No 21
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=87.62 E-value=0.3 Score=31.86 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEccCccccccccC------------------ccccCCCCCC
Q 030778 70 ILKCHACYTITAEIG------------------RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~~------------------k~fCp~CG~~ 94 (171)
+++|..|+-+|.... .-.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 378999999986321 1269999975
No 22
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=86.45 E-value=0.78 Score=34.98 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=31.8
Q ss_pred EccCccccccc-------cCccccCCCCCC---CceeEEEEEeCCCceEEeccCcccccccceeecC
Q 030778 72 KCHACYTITAE-------IGRIFCPKCGNG---GTLRKVAVTVGENGIVLASRRPRITLRGTKFSLP 128 (171)
Q Consensus 72 rC~~C~k~~~~-------~~k~fCp~CG~~---~TL~Rvsvsv~~~G~~~~~~~~~~n~RG~~ySlP 128 (171)
.|+.|+..... ..+.+|+.||.. ....-|.+-+..+|.+++.++..... ...|.+|
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~-~g~w~lP 70 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPY-RGKWTLP 70 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSS-TTCEECS
T ss_pred cCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCC-CCeEECc
Confidence 59999965521 236789999921 01223444444578876655443222 3368887
No 23
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=86.42 E-value=0.4 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=21.3
Q ss_pred EEEccCccccccccCccccCCCCCCCceeEE
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGNGGTLRKV 100 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~~~TL~Rv 100 (171)
...|..|.+-+... -|||.||.+ |.+.
T Consensus 18 ~~~C~~C~~~~~~~--afCPeCgq~--Le~l 44 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ--ALCPDCRQP--LQVL 44 (81)
T ss_dssp EEECTTTCCEEEEE--EECSSSCSC--CCEE
T ss_pred ceECccccccCCCc--ccCcchhhH--HHHH
Confidence 45799999987754 499999998 6553
No 24
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=86.23 E-value=0.35 Score=40.28 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=34.2
Q ss_pred EEccCcccccc---ccCccccCCCCCCCceeE----EEEEeCCCceEEeccCcccccccceeecCC
Q 030778 71 LKCHACYTITA---EIGRIFCPKCGNGGTLRK----VAVTVGENGIVLASRRPRITLRGTKFSLPM 129 (171)
Q Consensus 71 lrC~~C~k~~~---~~~k~fCp~CG~~~TL~R----vsvsv~~~G~~~~~~~~~~n~RG~~ySlPk 129 (171)
..|..|+..+. ...+..||.||.. ..-+ |.+-+..+|.+++.+++.+. ...|++|.
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~-~yp~~~~~viv~v~~~~~vLL~rr~~~~--~g~w~lPg 170 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRER-YYPQIAPCIIVAIRRDDSILLAQHTRHR--NGVHTVLA 170 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCE-ECCCCEEEEEEEEEETTEEEEEEETTTC--SSCCBCEE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCE-ecCCCCcEEEEEEEeCCEEEEEEecCCC--CCcEECCc
Confidence 47899986552 1236789999974 3333 33335567787766655432 34688863
No 25
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=85.16 E-value=0.47 Score=34.27 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.7
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 030778 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~-----------------~-k~fCp~CG~~ 94 (171)
+++|..|+-+|... . .-.||.||.+
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 58999999998641 1 1269999976
No 26
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=84.73 E-value=0.39 Score=35.86 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.8
Q ss_pred eeeeEEEEccCcccccc-ccC-ccccCCCCCCCceeE
Q 030778 65 QLHRWILKCHACYTITA-EIG-RIFCPKCGNGGTLRK 99 (171)
Q Consensus 65 ~~k~wvlrC~~C~k~~~-~~~-k~fCp~CG~~~TL~R 99 (171)
++..+-++|..|+..|. ... ...||.|++. .+..
T Consensus 62 ~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe-~Ie~ 97 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFKAEINIPSRCPKCKSE-WIEE 97 (105)
T ss_dssp EEEECCCBBTTTCCBCCCCSSCCSSCSSSCCC-CBCC
T ss_pred EEEEECcChhhCcCeecccCCCCCCCcCCCCC-ccCC
Confidence 67788899999998882 222 3689999997 6554
No 27
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=84.66 E-value=0.55 Score=30.93 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=18.8
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 030778 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~-----------------~-k~fCp~CG~~ 94 (171)
+++|..|+-+|... . .-.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 47999999998641 1 1269999976
No 28
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.68 E-value=0.47 Score=30.63 Aligned_cols=9 Identities=56% Similarity=1.125 Sum_probs=4.6
Q ss_pred ccccCCCCC
Q 030778 85 RIFCPKCGN 93 (171)
Q Consensus 85 k~fCp~CG~ 93 (171)
+..|+.||.
T Consensus 37 R~~C~kCG~ 45 (50)
T 3j20_Y 37 RWACGKCGY 45 (50)
T ss_dssp EEECSSSCC
T ss_pred eEECCCCCC
Confidence 445555553
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=83.42 E-value=0.62 Score=33.20 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=18.9
Q ss_pred EEEccCccccccc-----------------cC-ccccCCCCCC
Q 030778 70 ILKCHACYTITAE-----------------IG-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~-----------------~~-k~fCp~CG~~ 94 (171)
+++|..|+-+|.. .+ .-.||.||.+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5889999999864 11 1269999986
No 30
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.84 E-value=0.39 Score=32.76 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=22.9
Q ss_pred eEEEEccCcccccccc--CccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTITAEI--GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~--~k~fCp~CG~~~TL~R 99 (171)
.-.|+|..|++..... ...-||.||++ .|-|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R-ILyK 51 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHR-VMYK 51 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCC-CCBC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcE-EEEE
Confidence 3469999999876432 25789999998 6644
No 31
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=82.46 E-value=0.58 Score=32.28 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=18.7
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 030778 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~-----------------~-k~fCp~CG~~ 94 (171)
+++|..|+-+|... . .-.||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 47999999998631 1 1269999986
No 32
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=82.07 E-value=0.64 Score=31.92 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=11.7
Q ss_pred ccccCCCCCCCceeE
Q 030778 85 RIFCPKCGNGGTLRK 99 (171)
Q Consensus 85 k~fCp~CG~~~TL~R 99 (171)
+.|||.|... ||.+
T Consensus 49 kKycp~c~kH-tlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKH-TIHG 62 (66)
T ss_dssp CCCCCSSSSC-CCCC
T ss_pred EccCCCCCCe-eeEE
Confidence 5799999997 8754
No 33
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=80.48 E-value=1 Score=31.20 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEccCccccccccCccccCCCCCC
Q 030778 69 WILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
-.+.|.-|..+. ..+.||.||+.
T Consensus 10 ~~~AC~~C~~~~---~~~~CPnC~s~ 32 (69)
T 1ryq_A 10 SEKACRHCHYIT---SEDRCPVCGSR 32 (69)
T ss_dssp -CEEETTTCBEE---SSSSCTTTCCC
T ss_pred hhhhHHhCCccc---cCCcCCCccCC
Confidence 347899999987 35789999986
No 34
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=79.49 E-value=1.4 Score=31.79 Aligned_cols=24 Identities=33% Similarity=0.894 Sum_probs=16.6
Q ss_pred EEccCccccccc----cCccccCCCCCC
Q 030778 71 LKCHACYTITAE----IGRIFCPKCGNG 94 (171)
Q Consensus 71 lrC~~C~k~~~~----~~k~fCp~CG~~ 94 (171)
-+|++|+.++-. .+...|..||.-
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 678888876532 235778888874
No 35
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=78.97 E-value=0.72 Score=30.30 Aligned_cols=9 Identities=67% Similarity=1.855 Sum_probs=5.7
Q ss_pred cccCCCCCC
Q 030778 86 IFCPKCGNG 94 (171)
Q Consensus 86 ~fCp~CG~~ 94 (171)
.|||.||+-
T Consensus 19 ~fCPkCG~~ 27 (55)
T 2k4x_A 19 RFCPRCGPG 27 (55)
T ss_dssp CCCTTTTTT
T ss_pred ccCcCCCCc
Confidence 566666664
No 36
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=78.78 E-value=1.2 Score=31.86 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=22.8
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEEe
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLA 112 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsvsv~~~G~~~~ 112 (171)
..|..|..+... +.||.||+. ++ |-+=.|.+.+
T Consensus 24 rAC~~C~~v~~~---d~CPnCgs~-~~-----T~~w~G~ViI 56 (81)
T 3p8b_A 24 KACRHCHYITSE---DRCPVCGSR-DL-----SEEWFDLVII 56 (81)
T ss_dssp EEETTTCBEESS---SSCTTTCCC-CE-----ESCEEEEEEE
T ss_pred HHHhhCCCccCC---CCCCCCCCC-cc-----CCccceEEEE
Confidence 479999998754 479999996 43 2333476644
No 37
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=76.77 E-value=1.7 Score=35.63 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=19.4
Q ss_pred eEEEEccCccccccccC------ccccCCCCCC
Q 030778 68 RWILKCHACYTITAEIG------RIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~~------k~fCp~CG~~ 94 (171)
-+..+|..|.+.++... ...||.||..
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~ 151 (249)
T 1m2k_A 119 LRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSL 151 (249)
T ss_dssp EEEEEESSSSCEEECSSCCCSSSCCBCSSSSSB
T ss_pred cceeEeCCCCCcccchhhccCCCCCCCCCCCCC
Confidence 45688999998764211 2479999985
No 38
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.63 E-value=2 Score=28.07 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=23.4
Q ss_pred eeeeEEEEccCccccccccCccccCCCCCCCceeE
Q 030778 65 QLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRK 99 (171)
Q Consensus 65 ~~k~wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~R 99 (171)
+...=.+.|+-|+..-+ +.-..|.+||+. .|+-
T Consensus 9 ~r~~~k~iCpkC~a~~~-~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 9 ARIFKKYVCLRCGATNP-WGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp HHSSSEEECTTTCCEEC-TTCSSCSSSSSC-CCEE
T ss_pred HHHhCCccCCCCCCcCC-CCceecCCCCCc-cccc
Confidence 33345678999997643 346889999996 5653
No 39
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=76.12 E-value=1.2 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.708 Sum_probs=21.7
Q ss_pred eEEEEccCcccc-c---cc-------c-CccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTI-T---AE-------I-GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~-~---~~-------~-~k~fCp~CG~~~TL~R 99 (171)
.-.|.|.+|... | .. + -+.|||.|+.. ||.+
T Consensus 8 ~I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kH-tlhk 50 (54)
T 3v2d_6 8 KLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH-TVHR 50 (54)
T ss_dssp EEEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEE-EEEE
T ss_pred eEEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCE-eeEE
Confidence 457999999632 2 11 1 16899999997 8865
No 40
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=74.06 E-value=1.7 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=21.3
Q ss_pred eEEEEccCcccc-c---cc-------cC-ccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTI-T---AE-------IG-RIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~-~---~~-------~~-k~fCp~CG~~~TL~R 99 (171)
.-.|.|.+|... | .. +. +.|||.|+.. ||.+
T Consensus 5 ~I~L~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~kh-tlhk 47 (50)
T 3r8s_1 5 KIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH-VIYK 47 (50)
T ss_dssp EEEEEESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEE-EEEE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCE-eeEE
Confidence 457999999532 2 11 11 6899999997 8764
No 41
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=73.15 E-value=0.86 Score=27.49 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=17.2
Q ss_pred CCCCcceeeeeEEEEccCcccccc
Q 030778 58 PGGMQIRQLHRWILKCHACYTITA 81 (171)
Q Consensus 58 ~~g~~I~~~k~wvlrC~~C~k~~~ 81 (171)
++...+++-+.|.++|.||+...+
T Consensus 9 peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 9 PDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCcEEEEeCCcEEEEhhcCCCccc
Confidence 344455666889999999997654
No 42
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=72.44 E-value=1.7 Score=28.61 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=21.4
Q ss_pred eEEEEccCccccc----cc-------c-CccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTIT----AE-------I-GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~~----~~-------~-~k~fCp~CG~~~TL~R 99 (171)
.-.|.|.+|.... .. + -+.|||.|... ||.+
T Consensus 9 ~I~L~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kH-tlhk 51 (55)
T 2zjr_1 9 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 51 (55)
T ss_pred EEEEEEcccCCeeEeEcccCCCCCcceEEEccCCCCCCE-EeEE
Confidence 5579999996421 11 1 15699999997 8865
No 43
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=71.17 E-value=1.7 Score=38.02 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=19.6
Q ss_pred eEEEEccCccccccc------cC------ccccCCCCCC
Q 030778 68 RWILKCHACYTITAE------IG------RIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~------~~------k~fCp~CG~~ 94 (171)
-+..+|..|.+.+.. +. ...||.||..
T Consensus 142 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~ 180 (361)
T 1q14_A 142 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 180 (361)
T ss_dssp EEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB
T ss_pred ccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE
Confidence 567899999987653 10 1479999985
No 44
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=71.01 E-value=1.9 Score=35.24 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.5
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCC
Q 030778 68 RWILKCHACYTITAEI---------GRIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~---------~k~fCp~CG~~ 94 (171)
-+..+|..|.+.++.. ....||.||..
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ 154 (246)
T 1yc5_A 119 VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL 154 (246)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB
T ss_pred cceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc
Confidence 5668999999876420 13479999985
No 45
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=70.98 E-value=4.1 Score=31.74 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=19.2
Q ss_pred eeEEEEccCccccc----------cccCccccCCCCCC
Q 030778 67 HRWILKCHACYTIT----------AEIGRIFCPKCGNG 94 (171)
Q Consensus 67 k~wvlrC~~C~k~~----------~~~~k~fCp~CG~~ 94 (171)
.+++++|+.|+... .......||.||.+
T Consensus 75 ~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 112 (166)
T 3ir9_A 75 ERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 112 (166)
T ss_dssp EEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred eEEEEECCCCCceeEEEeecChhhcccccccccccCcc
Confidence 36889999998432 01123579999986
No 46
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=70.41 E-value=2.8 Score=34.39 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.9
Q ss_pred eEEEEccCcccccccc---------CccccCCCCC
Q 030778 68 RWILKCHACYTITAEI---------GRIFCPKCGN 93 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~---------~k~fCp~CG~ 93 (171)
-+..+|..|.+.++.. ....||.||.
T Consensus 121 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 121 MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EEEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred cCeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 5668999999876431 1246999998
No 47
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=69.89 E-value=1.8 Score=29.92 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=16.4
Q ss_pred EEEEccCcccccc--c-cCccccCCCCCC
Q 030778 69 WILKCHACYTITA--E-IGRIFCPKCGNG 94 (171)
Q Consensus 69 wvlrC~~C~k~~~--~-~~k~fCp~CG~~ 94 (171)
-+.+|+ |++..- . ....-|| ||..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEE
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCe
Confidence 368999 997642 1 1246799 9974
No 48
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=69.52 E-value=2.8 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.392 Sum_probs=19.6
Q ss_pred eEEEEccCccccccc------c------CccccCCCCCC
Q 030778 68 RWILKCHACYTITAE------I------GRIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~------~------~k~fCp~CG~~ 94 (171)
-+..+|..|.+.+.. + ....||.||..
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~ 172 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 172 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE
Confidence 567899999987642 1 12479999985
No 49
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=68.66 E-value=3 Score=29.05 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=15.7
Q ss_pred CccccCCCCCCCceeEEEEEe
Q 030778 84 GRIFCPKCGNGGTLRKVAVTV 104 (171)
Q Consensus 84 ~k~fCp~CG~~~TL~Rvsvsv 104 (171)
.+..||.||.. .++|+++-+
T Consensus 26 ~ky~C~fCgk~-~vkR~a~GI 45 (73)
T 1ffk_W 26 KKYKCPVCGFP-KLKRASTSI 45 (73)
T ss_pred cCccCCCCCCc-eeEEEEeEE
Confidence 36789999987 899988643
No 50
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=67.84 E-value=2.4 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.880 Sum_probs=14.9
Q ss_pred EEccCccccccccCccccCCCCC
Q 030778 71 LKCHACYTITAEIGRIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~ 93 (171)
-.|+.|+... .....||.||.
T Consensus 31 ~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEE--CTTBCCTTTCB
T ss_pred eECCCCCCEe--CCceEcCCCCc
Confidence 4688888763 34567888884
No 51
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=67.11 E-value=1.3 Score=41.44 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=3.1
Q ss_pred EEEccCcccccccc---CccccCCCCCC
Q 030778 70 ILKCHACYTITAEI---GRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~---~k~fCp~CG~~ 94 (171)
+-+|+.|+.+.... ....||+||++
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 56899999754211 13579999985
No 52
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=66.87 E-value=3.4 Score=35.00 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEccCccccccccC-------------ccccCCCCCCCcee
Q 030778 68 RWILKCHACYTITAEIG-------------RIFCPKCGNGGTLR 98 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~~-------------k~fCp~CG~~~TL~ 98 (171)
-+..+|..|.+.++... ...|| ||.. |+
T Consensus 152 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~--lr 192 (290)
T 3u31_A 152 VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI--FK 192 (290)
T ss_dssp EEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB--EE
T ss_pred cCcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE--EC
Confidence 46789999998764211 24599 9974 55
No 53
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.31 E-value=2 Score=30.78 Aligned_cols=17 Identities=24% Similarity=0.882 Sum_probs=14.3
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
+..||.||.. .++|+++
T Consensus 35 ky~CpfCGk~-~vkR~a~ 51 (83)
T 3j21_i 35 KHTCPVCGRK-AVKRIST 51 (83)
T ss_dssp CBCCSSSCSS-CEEEEET
T ss_pred ccCCCCCCCc-eeEecCc
Confidence 6789999997 8999773
No 54
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=65.89 E-value=3.4 Score=36.19 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=20.4
Q ss_pred eeEEEEccCccccccc----cCccccCCCCCC
Q 030778 67 HRWILKCHACYTITAE----IGRIFCPKCGNG 94 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~----~~k~fCp~CG~~ 94 (171)
..|++.|++|+..... .....||.||++
T Consensus 241 ~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~ 272 (392)
T 3axs_A 241 FGYIQYCFNCMNREVVTDLYKFKEKCPHCGSK 272 (392)
T ss_dssp EEEEEECTTTCCEEEECCGGGCCSBCTTTCSB
T ss_pred cceEEECCCCCCeEeecCCCCCCCcCCCCCCc
Confidence 4788999999854321 124689999987
No 55
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=65.71 E-value=2.7 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEccCccccccccCccccCCCCC-C
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGN-G 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~-~ 94 (171)
--+|.-|++.....-+..|..||. |
T Consensus 17 H~~CrRCG~~syH~qK~~Ca~CGygp 42 (57)
T 1vq8_1 17 HTKCRRCGEKSYHTKKKVCSSCGFGK 42 (57)
T ss_dssp EEECTTTCSEEEETTTTEETTTCTTT
T ss_pred cccccccCChhhhccccccccccCCc
Confidence 357999998877777899999998 6
No 56
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=65.22 E-value=3.7 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.0
Q ss_pred ceeeEecchHHHHHHHHHhCceeecCC
Q 030778 33 STVACITGDYAMQNVILQMGLRLLAPG 59 (171)
Q Consensus 33 ~~va~~TdDyAmQNVllqlGL~~~s~~ 59 (171)
..|+++|.|..|...|...||.++++.
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~~ 177 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDIP 177 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECHH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcHH
Confidence 379999999999999999999987653
No 57
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.16 E-value=4 Score=30.26 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=27.2
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEE--EeC---CCceEEeccCc
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAV--TVG---ENGIVLASRRP 116 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsv--sv~---~~G~~~~~~~~ 116 (171)
..|.+|.+-+.. .-+||.||.+ |.+... .+| .+|.-++++++
T Consensus 49 ~hC~~C~~~f~~--~a~CPdC~q~--LevLkACGAvdYFC~~chgLiSKkR 95 (101)
T 2jne_A 49 ARCRSCGEFIEM--KALCPDCHQP--LQVLKACGAVDYFCQHGHGLISKKR 95 (101)
T ss_dssp EEETTTCCEEEE--EEECTTTCSB--CEEEEETTEEEEEETTTTEEECTTT
T ss_pred EECccccchhhc--cccCcchhhH--HHHHHHhcCcchhhccCCceeecce
Confidence 469999987764 4799999998 766432 122 34455555443
No 58
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=65.02 E-value=5.5 Score=26.94 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=10.8
Q ss_pred CeeecCCCCcc--cccch-hhhhccCCCCCCCcC
Q 030778 140 NLILREDQLPQ--KYLYP-RNKKKVNKEVSGFSL 170 (171)
Q Consensus 140 ~~IL~EDQ~~~--~~~~~-k~~~k~~~~d~dy~~ 170 (171)
.-++..|+... ++... +++-.+.+++|.|+.
T Consensus 44 E~~~~~e~~~~~~~~~~~f~~~vd~~l~~~~~I~ 77 (78)
T 3ga8_A 44 ESIMNKEESDAFMAQVKAFRASVNAETVAPEFIV 77 (78)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CEEECHHHHHHHHHHHHHHHHHHhccCCChHHhh
Confidence 56777777432 22222 333344568888874
No 59
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=63.95 E-value=2.1 Score=31.15 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=14.3
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
+.+||.||.. .++|+++
T Consensus 36 ky~CpfCgk~-~vkR~a~ 52 (92)
T 3iz5_m 36 KYFCEFCGKF-AVKRKAV 52 (92)
T ss_dssp CBCCTTTCSS-CBEEEET
T ss_pred cccCcccCCC-eeEecCc
Confidence 5789999997 8998774
No 60
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=63.37 E-value=4.4 Score=34.30 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCC
Q 030778 68 RWILKCHACYTITAEI---------GRIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~---------~k~fCp~CG~~ 94 (171)
-+..+|..|.+.++.. ....||.||+.
T Consensus 137 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 172 (285)
T 3glr_A 137 FASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172 (285)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB
T ss_pred CCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc
Confidence 4668999999876421 12369999974
No 61
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=62.83 E-value=3.7 Score=40.83 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=20.6
Q ss_pred EEEccCccccc----------cccCccccCCCCCCCceeE
Q 030778 70 ILKCHACYTIT----------AEIGRIFCPKCGNGGTLRK 99 (171)
Q Consensus 70 vlrC~~C~k~~----------~~~~k~fCp~CG~~~TL~R 99 (171)
-|+|+-|.... .+++..-||+||.+ |.|
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~--~~~ 539 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK--YKK 539 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB--CEE
T ss_pred cccCccccccccccccccccccCCccccCcccccc--ccc
Confidence 38999999532 24666789999986 554
No 62
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=62.17 E-value=3.6 Score=29.38 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=21.6
Q ss_pred eEEEEccCcccc-c---cc-------c-CccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTI-T---AE-------I-GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~-~---~~-------~-~k~fCp~CG~~~TL~R 99 (171)
.-.|.|.+|... | .+ . -+.|||.|... ||.+
T Consensus 36 ~I~L~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKH-tlHk 78 (82)
T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 78 (82)
T ss_pred EEEEEEecCCCeeEEEecCCCCCCcceEEEccCCCCCCe-eeEE
Confidence 557999999632 1 11 1 15799999997 8865
No 63
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.16 E-value=4.6 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=17.7
Q ss_pred EEEEccCcccccc---c-cCccccCCCCCC
Q 030778 69 WILKCHACYTITA---E-IGRIFCPKCGNG 94 (171)
Q Consensus 69 wvlrC~~C~k~~~---~-~~k~fCp~CG~~ 94 (171)
..-+|++|+++.- . .+...|..||.-
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 3468999997652 2 236789999873
No 64
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=61.95 E-value=1.8 Score=27.03 Aligned_cols=7 Identities=43% Similarity=1.445 Sum_probs=3.4
Q ss_pred ccCCCCC
Q 030778 87 FCPKCGN 93 (171)
Q Consensus 87 fCp~CG~ 93 (171)
.||.||+
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 3555544
No 65
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=61.26 E-value=2.5 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=14.6
Q ss_pred CccccCCCCCCCceeEEEE
Q 030778 84 GRIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 84 ~k~fCp~CG~~~TL~Rvsv 102 (171)
.+.+||.||.. .++|+++
T Consensus 35 ~ky~CpfCgk~-~vkR~a~ 52 (92)
T 3izc_m 35 ARYDCSFCGKK-TVKRGAA 52 (92)
T ss_dssp SCCCCSSSCSS-CCEEEET
T ss_pred cCCcCCCCCCc-eeeeccc
Confidence 36789999987 8998874
No 66
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.70 E-value=3.5 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.809 Sum_probs=20.6
Q ss_pred EEccCccccccccCccccCCCCC-C
Q 030778 71 LKCHACYTITAEIGRIFCPKCGN-G 94 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~-~ 94 (171)
-+|.-|++.....-+..|..||. |
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGygp 42 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGFGR 42 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCTTT
T ss_pred eeecccCcchhccccccccccCCch
Confidence 47999998877777899999998 5
No 67
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=59.61 E-value=2.7 Score=31.86 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=14.9
Q ss_pred CccccCCCCCCCceeEEEE
Q 030778 84 GRIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 84 ~k~fCp~CG~~~TL~Rvsv 102 (171)
.+.+||.||.. +++|+++
T Consensus 59 akytCPfCGk~-~vKR~av 76 (116)
T 3cc2_Z 59 EDHACPNCGED-RVDRQGT 76 (116)
T ss_dssp SCEECSSSCCE-EEEEEET
T ss_pred cCCcCCCCCCc-eeEecCc
Confidence 36789999997 8999884
No 68
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=59.42 E-value=4.9 Score=34.51 Aligned_cols=15 Identities=33% Similarity=0.848 Sum_probs=10.9
Q ss_pred CccccCCCCCCCcee
Q 030778 84 GRIFCPKCGNGGTLR 98 (171)
Q Consensus 84 ~k~fCp~CG~~~TL~ 98 (171)
.+.+||+||+..++.
T Consensus 181 ~~~~CPvCGs~P~~s 195 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG 195 (309)
T ss_dssp TCSSCTTTCCCEEEE
T ss_pred cCCCCCCCCCcCcee
Confidence 368999999983333
No 69
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=59.33 E-value=3.7 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
--.|..|++.....-+..|..||.|
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYP 40 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSS
T ss_pred cceecCcCchhhhcccccccccCCc
Confidence 4579999988877778999999998
No 70
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=59.26 E-value=2.1 Score=33.50 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=25.3
Q ss_pred eeeeEEEEccCcccc-ccccCccccCCCCCCCceeEEE
Q 030778 65 QLHRWILKCHACYTI-TAEIGRIFCPKCGNGGTLRKVA 101 (171)
Q Consensus 65 ~~k~wvlrC~~C~k~-~~~~~k~fCp~CG~~~TL~Rvs 101 (171)
+.-.-.-+|..|+.. .+......||.||+. -.||||
T Consensus 135 ~lGvv~a~~~~~g~~m~~~~~~~~cp~~g~~-e~RKva 171 (179)
T 3m7n_A 135 EMGVLRALCSNCKTEMVREGDILKCPECGRV-EKRKIS 171 (179)
T ss_dssp TCEEEECBCTTTCCBCEECSSSEECSSSCCE-ECCCBC
T ss_pred CCCEEEecccccCCceEECCCEEECCCCCCE-EEEecc
Confidence 344566789889863 333356789999997 677776
No 71
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=58.92 E-value=3.3 Score=30.75 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.5
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
-.|||.|||-
T Consensus 4 ~~FCp~Cgnl 13 (122)
T 1twf_I 4 FRFCRDCNNM 13 (122)
T ss_dssp CCBCSSSCCB
T ss_pred CCcccccCcc
Confidence 4799999984
No 72
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.84 E-value=2.4 Score=30.22 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=8.0
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
..-||.||++
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 3469999996
No 73
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=58.45 E-value=3.6 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.0
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
--.|..|++.....-+..|..||.|
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 16 HTLCRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp EEECTTTCSEEEETTTTEESSSCGG
T ss_pred cceecCcCchhhhhccccccccCCc
Confidence 4679999988877788999999988
No 74
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=58.37 E-value=3.3 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.0
Q ss_pred EccCccccccccCccccCCCCCC
Q 030778 72 KCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
.|.||.+.+.+.....||+|++.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~ 39 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV 39 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC
T ss_pred cccccCcccCCCccEECCccCcC
Confidence 39999988765444569999873
No 75
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=57.99 E-value=6.2 Score=28.57 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=22.9
Q ss_pred EEccCccccc---cccCccccCCCCCCCceeEEEE
Q 030778 71 LKCHACYTIT---AEIGRIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 71 lrC~~C~k~~---~~~~k~fCp~CG~~~TL~Rvsv 102 (171)
++|. |.+-+ ..++..-|+.||+. -..|+++
T Consensus 49 FkC~-C~~Rt~sl~r~P~~~C~~Cg~~-~wer~~M 81 (92)
T 2kwq_A 49 FKCP-CGNRTISLDRLPKKHCSTCGLF-KWERVGM 81 (92)
T ss_dssp EECT-TSCEEEESSSSCCSCCTTTCSC-CCEEECC
T ss_pred EECC-CCCceeEeeeCCCCCCCCCCCC-ceEEeec
Confidence 7895 98654 44567789999997 6888874
No 76
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.00 E-value=3.3 Score=30.37 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=8.6
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
-.|||.|||-
T Consensus 4 m~FCp~Cgn~ 13 (113)
T 3h0g_I 4 FQYCIECNNM 13 (113)
T ss_dssp CCCCSSSCCC
T ss_pred ceeCcCCCCE
Confidence 3799999996
No 77
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=55.89 E-value=5.1 Score=29.46 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEccCccccccccCccccCCCCCC
Q 030778 69 WILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
=-..|+.|+.-.....+..|.+||.+
T Consensus 15 tH~lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 15 THTLCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp CEECCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCCcCCCCCCccCcCccccCcccCCc
Confidence 34579999987667778999999987
No 78
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=55.89 E-value=5.1 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.951 Sum_probs=14.8
Q ss_pred EEEccCccccccccCccccCCCCC
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGN 93 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~ 93 (171)
+-.|+.|+.... ....||.||.
T Consensus 30 l~~c~~cGe~~~--~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKP--PHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEEC--TTSCCTTTCE
T ss_pred eeECCCCCCeec--ceEEcCCCCc
Confidence 356888887443 3467888884
No 79
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=55.83 E-value=2.6 Score=31.31 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=13.6
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
+.+||.||.. .++|+++
T Consensus 36 ky~CpfCgk~-~vKR~a~ 52 (103)
T 4a17_Y 36 KYGCPFCGKV-AVKRAAV 52 (103)
T ss_dssp CEECTTTCCE-EEEEEET
T ss_pred CCCCCCCCCc-eeeecCc
Confidence 5789999987 8888774
No 80
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=55.71 E-value=3.4 Score=31.44 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.7
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
-.|||.|||-
T Consensus 24 ~~FCPeCgNm 33 (133)
T 3qt1_I 24 FRFCRDCNNM 33 (133)
T ss_dssp CCBCTTTCCB
T ss_pred CeeCCCCCCE
Confidence 5899999994
No 81
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=55.13 E-value=5.9 Score=28.31 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=18.7
Q ss_pred EEEEccCccccccc----cCccccCCCCCC
Q 030778 69 WILKCHACYTITAE----IGRIFCPKCGNG 94 (171)
Q Consensus 69 wvlrC~~C~k~~~~----~~k~fCp~CG~~ 94 (171)
..-+|++|+.+.-. .+...|..||.-
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 34689999976532 336789999974
No 82
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=54.54 E-value=2.3 Score=29.70 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=12.8
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
+..||.||.. .++|+++
T Consensus 26 ky~C~fCgk~-~vkR~a~ 42 (72)
T 3jyw_9 26 RYDCSFCGKK-TVKRGAA 42 (72)
T ss_dssp CBCCSSCCSS-CBSBCSS
T ss_pred CccCCCCCCc-eeEecCC
Confidence 5678888887 7777653
No 83
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=54.43 E-value=5.7 Score=31.96 Aligned_cols=23 Identities=30% Similarity=0.767 Sum_probs=16.8
Q ss_pred EEccCccccc--cccCccccCCCCC
Q 030778 71 LKCHACYTIT--AEIGRIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~--~~~~k~fCp~CG~ 93 (171)
..|..|.... ......||+.||.
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCcccccccccccccccc
Confidence 4699999752 2234689999996
No 84
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=53.57 E-value=6 Score=28.21 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=18.2
Q ss_pred EEEccCccccccc----cCccccCCCCCC
Q 030778 70 ILKCHACYTITAE----IGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~----~~k~fCp~CG~~ 94 (171)
.-+|++|+.+.-. .+...|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 4589999976532 336789999973
No 85
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.14 E-value=5.3 Score=29.10 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=14.8
Q ss_pred ccccCCCCCCCceeEEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAVT 103 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsvs 103 (171)
+-|||.|+.. |+.+|+-+
T Consensus 8 ~tyC~~C~kH-t~HkVt~y 25 (94)
T 3j21_j 8 RTYCPFCKKH-TIHKVERV 25 (94)
T ss_dssp EECCTTTTSC-EEEEECCC
T ss_pred eecCcCCCCC-cceEEEEE
Confidence 5799999997 99888743
No 86
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=52.56 E-value=9.3 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=19.6
Q ss_pred EEEccCccccccccC---ccccCCCCCCCc
Q 030778 70 ILKCHACYTITAEIG---RIFCPKCGNGGT 96 (171)
Q Consensus 70 vlrC~~C~k~~~~~~---k~fCp~CG~~~T 96 (171)
...|.-|.+.+.... ...||.||+-+|
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred EEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 367999998875533 236999998743
No 87
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=52.31 E-value=6.2 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=16.5
Q ss_pred EEccCccccccccCccccCCCCCC
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
..|..|..+... +-||.||+.
T Consensus 2 rAC~~C~~v~~~---~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTND---EICPICHSP 22 (59)
T ss_dssp EEETTTCBEESS---SBCTTTCCB
T ss_pred cccccCCcccCC---CCCCCCCCC
Confidence 469999988644 479999984
No 88
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=51.23 E-value=5 Score=26.02 Aligned_cols=31 Identities=10% Similarity=-0.082 Sum_probs=20.8
Q ss_pred eEEEEccCccccc----cc-----c-CccccCCCCCCCceeE
Q 030778 68 RWILKCHACYTIT----AE-----I-GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 68 ~wvlrC~~C~k~~----~~-----~-~k~fCp~CG~~~TL~R 99 (171)
.-.|.|.+|.... .. + -+.|||.|... ||.+
T Consensus 9 ~i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~kh-tlhk 49 (52)
T 2ftc_P 9 LVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQR-VLFV 49 (52)
T ss_pred EEEEEEecCCCeeEEEecCCCCceeEEEccCCCCCce-EeEE
Confidence 4568999995321 11 1 15699999997 8764
No 89
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.80 E-value=3.6 Score=26.92 Aligned_cols=9 Identities=44% Similarity=1.427 Sum_probs=4.4
Q ss_pred ccccCCCCC
Q 030778 85 RIFCPKCGN 93 (171)
Q Consensus 85 k~fCp~CG~ 93 (171)
..+|..||.
T Consensus 30 e~vC~~CGl 38 (58)
T 1dl6_A 30 DMICPECGL 38 (58)
T ss_dssp CEECTTTCC
T ss_pred eEEeCCCCC
Confidence 345555554
No 90
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=50.01 E-value=4.9 Score=29.25 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=15.2
Q ss_pred ccccCCCCCCCceeEEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAVT 103 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsvs 103 (171)
+-|||.|+.. |+.+|+-+
T Consensus 8 ~tyCp~C~kH-t~HkVtqy 25 (92)
T 1vq8_3 8 NTYCPHCNEH-QEHEVEKV 25 (92)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred cccCCCCCCC-ccEEEEEE
Confidence 5699999997 99988854
No 91
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=49.18 E-value=11 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.1
Q ss_pred eEEEEccC--ccccccc---------cCccccCCCCCC
Q 030778 68 RWILKCHA--CYTITAE---------IGRIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~--C~k~~~~---------~~k~fCp~CG~~ 94 (171)
-+..+|.. |.+.+.. .....||.||..
T Consensus 157 ~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 194 (323)
T 1j8f_A 157 FYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL 194 (323)
T ss_dssp EEEEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCB
T ss_pred cceeecCCCccCccccHHHHHHhhccCCCCCCcCCCCc
Confidence 46688999 9987641 112479999985
No 92
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=48.48 E-value=16 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.2
Q ss_pred ceeeEecchHHHHHHHHHhCceeecCCCCc
Q 030778 33 STVACITGDYAMQNVILQMGLRLLAPGGMQ 62 (171)
Q Consensus 33 ~~va~~TdDyAmQNVllqlGL~~~s~~g~~ 62 (171)
.+.+++|.|..++.++...|++++.+.+.+
T Consensus 110 ~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~~ 139 (147)
T 1o4w_A 110 YGCILITNDKELKRKAKQRGIPVGYLKEDK 139 (147)
T ss_dssp HTCEEECCCHHHHHHHHHTTCCEECCCCCC
T ss_pred hCCEEEECCHHHHHHHHHCCCeEEEecCCc
Confidence 347899999999999999999999987654
No 93
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=48.32 E-value=8 Score=30.59 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=25.9
Q ss_pred eEEEEccCcccccc--ccCccccCCCCCC-CceeE--EEEEe-CCCceE
Q 030778 68 RWILKCHACYTITA--EIGRIFCPKCGNG-GTLRK--VAVTV-GENGIV 110 (171)
Q Consensus 68 ~wvlrC~~C~k~~~--~~~k~fCp~CG~~-~TL~R--vsvsv-~~~G~~ 110 (171)
-|-..|+.|.|.-. ....-+|++||.. ..-.| +++.| |..|.+
T Consensus 40 ~~Y~ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RYil~~~i~D~TG~~ 88 (172)
T 3u50_C 40 LYYYRCTCQGKSVLKYHGDSFFCESCQQFINPQVHLMLRAFVQDSTGTI 88 (172)
T ss_dssp CEEEECTTSCCCEEEETTTEEEETTTTEECCCEEEECEEEEEEETTEEE
T ss_pred EEehhchhhCCEeeeCCCCeEECCCCCCCCCceEEEEEEEEEEeCCCCE
Confidence 45678999996543 2335689999962 12233 34444 445765
No 94
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=47.39 E-value=6.3 Score=30.28 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=15.0
Q ss_pred cCCCCcceeeeeEEEEccCccccc
Q 030778 57 APGGMQIRQLHRWILKCHACYTIT 80 (171)
Q Consensus 57 s~~g~~I~~~k~wvlrC~~C~k~~ 80 (171)
+++...+++-+.|.++|.||+...
T Consensus 110 sPdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 110 RPDTRIIREGRISLLKCEACGAKA 133 (138)
T ss_dssp SCSSCCEEETTTTEEECSTTSCCC
T ss_pred CcCcEEEEcCCeEEEEccCCCCCc
Confidence 556665666666777777776543
No 95
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=47.05 E-value=8.8 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=12.7
Q ss_pred eEEEEccCccccccccC------ccccCCCCCC
Q 030778 68 RWILKCHACYTITAEIG------RIFCPKCGNG 94 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~~~------k~fCp~CG~~ 94 (171)
-+..+|..|.+.++... .--||.||..
T Consensus 111 ~~~~~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~ 143 (235)
T 1s5p_A 111 LLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAP 143 (235)
T ss_dssp EEEEEETTTCCEEECCSCCCSSCCC-------C
T ss_pred ceEEEeCCCCCcccchhhccCCCCCCCCCCCCe
Confidence 56689999998764211 2357788874
No 96
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=45.99 E-value=5.1 Score=35.79 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=3.1
Q ss_pred eeeEEEEccCcccccc----c-------cCccccCCCCCC
Q 030778 66 LHRWILKCHACYTITA----E-------IGRIFCPKCGNG 94 (171)
Q Consensus 66 ~k~wvlrC~~C~k~~~----~-------~~k~fCp~CG~~ 94 (171)
...|++||..|..... . .....||.||.+
T Consensus 333 ~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 372 (441)
T 3e20_C 333 MIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAE 372 (441)
T ss_dssp CEEC----------CCEECSCTTTCCC-------------
T ss_pred cceeEEECCCCceEEEecCccccccccccccccCcccCcc
Confidence 4578899999963321 1 112379999986
No 97
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=45.91 E-value=6.1 Score=29.53 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.0
Q ss_pred ccccCCCCCCCceeEEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAVT 103 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsvs 103 (171)
+-|||.|+.. |+.+|+-+
T Consensus 9 ~tyCpkC~kH-t~HkVtqy 26 (109)
T 4a18_C 9 KTYCKKCNSH-TNHKVSQY 26 (109)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred eecCcCCCCC-cceEEEEe
Confidence 5799999997 99988854
No 98
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=45.27 E-value=15 Score=26.10 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.3
Q ss_pred cccCCCCCCCcee
Q 030778 86 IFCPKCGNGGTLR 98 (171)
Q Consensus 86 ~fCp~CG~~~TL~ 98 (171)
..||.||.. ++.
T Consensus 3 M~Cp~Cg~~-~~~ 14 (133)
T 3o9x_A 3 MKCPVCHQG-EMV 14 (133)
T ss_dssp CBCTTTSSS-BEE
T ss_pred cCCCcCCCC-cee
Confidence 479999986 553
No 99
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=44.51 E-value=6.1 Score=28.36 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=10.0
Q ss_pred cCccccCCCCCC
Q 030778 83 IGRIFCPKCGNG 94 (171)
Q Consensus 83 ~~k~fCp~CG~~ 94 (171)
..+.||+.||.+
T Consensus 65 ~~r~FC~~CGs~ 76 (118)
T 3fac_A 65 AKHWFCRTCGIY 76 (118)
T ss_dssp SEEEEETTTCCE
T ss_pred EeeEECCCCCcc
Confidence 347899999986
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.41 E-value=10 Score=32.52 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEccCccccccccCccccCCCCCCCce
Q 030778 70 ILKCHACYTITAEIGRIFCPKCGNGGTL 97 (171)
Q Consensus 70 vlrC~~C~k~~~~~~k~fCp~CG~~~TL 97 (171)
.+.|.-|+..-. ..+.-||.||+...|
T Consensus 208 ~l~Cs~C~t~W~-~~R~~C~~Cg~~~~l 234 (309)
T 2fiy_A 208 YLSCSLCACEWH-YVRIKCSHCEESKHL 234 (309)
T ss_dssp EEEETTTCCEEE-CCTTSCSSSCCCSCC
T ss_pred EEEeCCCCCEEe-ecCcCCcCCCCCCCe
Confidence 689999998765 358899999996333
No 101
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=42.34 E-value=10 Score=26.70 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=9.2
Q ss_pred ccccCCCCCCCceeEEE
Q 030778 85 RIFCPKCGNGGTLRKVA 101 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvs 101 (171)
+..||.||.. .+.|.+
T Consensus 27 ~y~Cp~CG~~-~v~r~a 42 (83)
T 1vq8_Z 27 DHACPNCGED-RVDRQG 42 (83)
T ss_dssp CEECSSSCCE-EEEEEE
T ss_pred cCcCCCCCCc-ceeccC
Confidence 4467777765 455544
No 102
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=39.26 E-value=23 Score=20.82 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=11.3
Q ss_pred cccCCCCCCCceeEEEEEeCCCceE
Q 030778 86 IFCPKCGNGGTLRKVAVTVGENGIV 110 (171)
Q Consensus 86 ~fCp~CG~~~TL~Rvsvsv~~~G~~ 110 (171)
..|+.|||- |.|..+.+|.+
T Consensus 7 Y~C~~CGni-----vev~~~g~~~l 26 (36)
T 1dxg_A 7 YKCELCGQV-----VKVLEEGGGTL 26 (36)
T ss_dssp EECTTTCCE-----EEEEECCSSCE
T ss_pred EEcCCCCcE-----EEEEeCCCcCE
Confidence 358888874 44434555543
No 103
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=39.15 E-value=11 Score=32.02 Aligned_cols=13 Identities=46% Similarity=1.293 Sum_probs=9.7
Q ss_pred cccCCCCCCCceeE
Q 030778 86 IFCPKCGNGGTLRK 99 (171)
Q Consensus 86 ~fCp~CG~~~TL~R 99 (171)
.+||.||+. .|.+
T Consensus 35 ~yCPnCG~~-~l~~ 47 (257)
T 4esj_A 35 SYCPNCGNN-PLNH 47 (257)
T ss_dssp CCCTTTCCS-SCEE
T ss_pred CcCCCCCCh-hhhh
Confidence 579999986 6754
No 104
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=38.82 E-value=5.7 Score=38.03 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=16.7
Q ss_pred EccCccccccccC-ccc------cCCCCCC
Q 030778 72 KCHACYTITAEIG-RIF------CPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~-k~f------Cp~CG~~ 94 (171)
-|..|.+.|.++. |.| ||.||=.
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCC
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCe
Confidence 4777777776643 666 9999975
No 105
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=38.19 E-value=18 Score=29.98 Aligned_cols=14 Identities=14% Similarity=0.577 Sum_probs=11.1
Q ss_pred eEEEEccCcccccc
Q 030778 68 RWILKCHACYTITA 81 (171)
Q Consensus 68 ~wvlrC~~C~k~~~ 81 (171)
-+..+|..|++.+.
T Consensus 132 ~~~~~C~~C~~~~~ 145 (273)
T 3riy_A 132 LFKTRCTSCGVVAE 145 (273)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CCeeEcCCCCCccc
Confidence 56789999998763
No 106
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.08 E-value=9 Score=26.00 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=6.3
Q ss_pred cccCCCCCC
Q 030778 86 IFCPKCGNG 94 (171)
Q Consensus 86 ~fCp~CG~~ 94 (171)
..||.|+++
T Consensus 9 L~CP~ck~~ 17 (68)
T 2hf1_A 9 LVCPLCKGP 17 (68)
T ss_dssp CBCTTTCCB
T ss_pred eECCCCCCc
Confidence 467777775
No 107
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=37.78 E-value=15 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.1
Q ss_pred eEEEEccCccccccc---------cCccccCCCCC
Q 030778 68 RWILKCHACYTITAE---------IGRIFCPKCGN 93 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~---------~~k~fCp~CG~ 93 (171)
-+..+|..|++.++. .....||.||.
T Consensus 159 l~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 159 FATATCVTCHWNLPGERIFNKIRNLELPLCPYCYK 193 (354)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHH
T ss_pred cCccccCCCCCcCCHHHHHHHhhccCCCcCccccc
Confidence 567899999976532 12357999983
No 108
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=37.02 E-value=7.1 Score=30.40 Aligned_cols=8 Identities=38% Similarity=1.011 Sum_probs=4.4
Q ss_pred ccCCCCCC
Q 030778 87 FCPKCGNG 94 (171)
Q Consensus 87 fCp~CG~~ 94 (171)
-|..||..
T Consensus 127 ~C~ACGa~ 134 (148)
T 2d74_B 127 KCEACGAE 134 (148)
T ss_dssp CCSSSCCC
T ss_pred EecCCCCC
Confidence 35556654
No 109
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.70 E-value=13 Score=20.78 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=7.3
Q ss_pred EEccCcccccc
Q 030778 71 LKCHACYTITA 81 (171)
Q Consensus 71 lrC~~C~k~~~ 81 (171)
+.|.-|.+.+.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 56777776653
No 110
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.68 E-value=13 Score=29.23 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=12.8
Q ss_pred cCCCCcce--eeeeEEEEccCccccc
Q 030778 57 APGGMQIR--QLHRWILKCHACYTIT 80 (171)
Q Consensus 57 s~~g~~I~--~~k~wvlrC~~C~k~~ 80 (171)
+++...++ +-+.|.++|.||+...
T Consensus 111 sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 111 NPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp CSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred CCccEEEEecCCCEEEEEccCCCCCC
Confidence 44544443 4455666666666544
No 111
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.23 E-value=8.1 Score=28.54 Aligned_cols=31 Identities=19% Similarity=0.658 Sum_probs=22.8
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEEE
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAVT 103 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~~TL~Rvsvs 103 (171)
.-|+.|........-..||.|-.+ +.||...
T Consensus 23 vFCydCa~~~~~~~~k~Cp~C~~~--V~rVe~~ 53 (101)
T 3vk6_A 23 VFCYDCAILHEKKGDKMCPGCSDP--VQRIEQC 53 (101)
T ss_dssp EEEHHHHHHHHHTTCCBCTTTCCB--CSEEEEE
T ss_pred cHHHHHHHHHHhccCCCCcCcCCe--eeeeEEe
Confidence 468888876543344689999997 8888864
No 112
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=34.50 E-value=12 Score=29.54 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=9.7
Q ss_pred CccccCCCCCC
Q 030778 84 GRIFCPKCGNG 94 (171)
Q Consensus 84 ~k~fCp~CG~~ 94 (171)
.+.||+.||.+
T Consensus 97 ~r~FC~~CGs~ 107 (196)
T 1x6m_A 97 QRHRCRDCGVH 107 (196)
T ss_dssp EEEEETTTCCE
T ss_pred eeEECCCCCCc
Confidence 47899999997
No 113
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=33.84 E-value=20 Score=25.26 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEccCccccccc-----cCccccCCCCCCCcee
Q 030778 70 ILKCHACYTITAE-----IGRIFCPKCGNGGTLR 98 (171)
Q Consensus 70 vlrC~~C~k~~~~-----~~k~fCp~CG~~~TL~ 98 (171)
+..|++|++.... .....|..||.+ ...
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~-~~~ 37 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHS-LFD 37 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCB-TTC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCc-ccc
Confidence 6789999986532 124569999987 443
No 114
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.83 E-value=9.2 Score=25.95 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=7.4
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (68)
T 2jr6_A 8 ILVCPVTKGR 17 (68)
T ss_dssp CCBCSSSCCB
T ss_pred heECCCCCCc
Confidence 3578888876
No 115
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.48 E-value=9.1 Score=26.11 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=7.5
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (70)
T 2js4_A 8 ILVCPVCKGR 17 (70)
T ss_dssp CCBCTTTCCB
T ss_pred heECCCCCCc
Confidence 3578888886
No 116
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=33.42 E-value=48 Score=24.64 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=14.0
Q ss_pred ccCCCCCCCceeEEEEEeCCCceE
Q 030778 87 FCPKCGNGGTLRKVAVTVGENGIV 110 (171)
Q Consensus 87 fCp~CG~~~TL~Rvsvsv~~~G~~ 110 (171)
-||.||.. -.|++.-..||..
T Consensus 54 kcprcgae---gsvsivetkngyk 74 (131)
T 2x5c_A 54 KCPRCGAE---GSVSIVETKNGYK 74 (131)
T ss_dssp ECTTTSCE---EEEEEEECTTSCE
T ss_pred cCCCCCCc---cceEEEEecCCcE
Confidence 49999986 3456555666643
No 117
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.24 E-value=13 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=17.1
Q ss_pred EEEccCcccccccc----------CccccCCCCCC
Q 030778 70 ILKCHACYTITAEI----------GRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~~----------~k~fCp~CG~~ 94 (171)
-+.|.-|++.+... ..-.|+.||..
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 47899999865321 12469999975
No 118
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=33.24 E-value=24 Score=33.34 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=28.2
Q ss_pred HHHhCcee-----ecCCCCcceeeeeEEEEccCccccccccCccccCCCCCCCceeE
Q 030778 48 ILQMGLRL-----LAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRK 99 (171)
Q Consensus 48 llqlGL~~-----~s~~g~~I~~~k~wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~R 99 (171)
..++||.+ +.-.|..|-++-.-+..-..=......++ ..||.||++ |.|
T Consensus 364 i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~r~~~~~~~~~P-~~CP~Cgs~--l~~ 417 (671)
T 2owo_A 364 IERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFP-THCPVCGSD--VER 417 (671)
T ss_dssp HHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSCBCCCCC-SBCTTTCCB--EEE
T ss_pred HHHcCCCCCCEEEEEECCCcccceeccccccCCCCCccCcCC-CCCCCCCCE--eEE
Confidence 56777775 33458888888776643211111111222 579999997 544
No 119
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.84 E-value=6.1 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.860 Sum_probs=15.2
Q ss_pred EccCccccccccCccccCCCCCC
Q 030778 72 KCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
.|..|+.....-..+-||.|+.+
T Consensus 45 vCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCC
T ss_pred hhHHHHHHHHhccCccccccCCc
Confidence 46666655444456789999876
No 120
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.46 E-value=9.7 Score=25.84 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=7.3
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
...||.|+++
T Consensus 10 iL~CP~ck~~ 19 (67)
T 2jny_A 10 VLACPKDKGP 19 (67)
T ss_dssp CCBCTTTCCB
T ss_pred HhCCCCCCCc
Confidence 3568888876
No 121
>1r8o_B STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=31.89 E-value=39 Score=23.02 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=17.5
Q ss_pred CccccCCCCCCCceeEEEEEeCCCceE
Q 030778 84 GRIFCPKCGNGGTLRKVAVTVGENGIV 110 (171)
Q Consensus 84 ~k~fCp~CG~~~TL~Rvsvsv~~~G~~ 110 (171)
...|||.|+. + .-|-++++++|.-
T Consensus 30 klv~CP~c~~--~-~diGI~~d~~g~r 53 (71)
T 1r8o_B 30 KDVYSSSKGR--D-LDDGIEVNKKKEK 53 (71)
T ss_dssp EEEEECTTSC--E-EEEEEEECTTSCE
T ss_pred EEEECCCCCc--c-cceeEEEeCCCEE
Confidence 3689999843 4 7788888877753
No 122
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.38 E-value=44 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=20.2
Q ss_pred eeeeEEEEccCccccccc-------cCccccCCCCCC
Q 030778 65 QLHRWILKCHACYTITAE-------IGRIFCPKCGNG 94 (171)
Q Consensus 65 ~~k~wvlrC~~C~k~~~~-------~~k~fCp~CG~~ 94 (171)
++..-.++|..|+..... ..-..||.|++.
T Consensus 129 ~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 129 RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 455566999999955321 112469999997
No 123
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=31.28 E-value=27 Score=22.13 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=12.6
Q ss_pred ccccCCCCCCCceeEEEEEe
Q 030778 85 RIFCPKCGNGGTLRKVAVTV 104 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsvsv 104 (171)
..-||+||+. .+.-..+-+
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~ 33 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQT 33 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECC
T ss_pred EeECCCCCCC-EEEEEEeec
Confidence 4569999997 555444433
No 124
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=31.01 E-value=15 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=18.0
Q ss_pred EEccCcccc--ccccCccccCCCCCC
Q 030778 71 LKCHACYTI--TAEIGRIFCPKCGNG 94 (171)
Q Consensus 71 lrC~~C~k~--~~~~~k~fCp~CG~~ 94 (171)
-.|+-|.-. |.+-....||-||..
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 479999843 455557899999974
No 125
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=31.00 E-value=12 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEccCcccccccc-CccccCCCCCCCceeEEEE
Q 030778 71 LKCHACYTITAEI-GRIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 71 lrC~~C~k~~~~~-~k~fCp~CG~~~TL~Rvsv 102 (171)
-+|.....+.+.. ....||.||+. -.||||-
T Consensus 170 A~c~~g~~m~~~~~~~m~cp~cg~~-E~RKva~ 201 (209)
T 2nn6_I 170 AHSESGIQMVPISWCEMQCPKTHTK-EFRKVAR 201 (209)
T ss_dssp CBCSSSCBCEEEETTEEECTTTTCC-BCCCC--
T ss_pred EEcCCCCEEEEccCCEEECCCCCCE-EeeccCC
Confidence 3687744444433 34789999997 7888874
No 126
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=30.86 E-value=22 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=24.7
Q ss_pred CCCcceeeeeEEEEccCcccccc------------ccCccccCCCCCC
Q 030778 59 GGMQIRQLHRWILKCHACYTITA------------EIGRIFCPKCGNG 94 (171)
Q Consensus 59 ~g~~I~~~k~wvlrC~~C~k~~~------------~~~k~fCp~CG~~ 94 (171)
+..+-+....+.++|++|+..+. .....-||+|+..
T Consensus 11 DeeRfr~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~ 58 (206)
T 3flo_B 11 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQL 58 (206)
T ss_dssp CTTTTTTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCB
T ss_pred HHHHhCcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCc
Confidence 34566778899999999975321 1123459999974
No 127
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.91 E-value=11 Score=25.67 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 030778 84 GRIFCPKCGNG 94 (171)
Q Consensus 84 ~k~fCp~CG~~ 94 (171)
...||..||..
T Consensus 32 k~r~CaRCGg~ 42 (62)
T 2a20_A 32 QTKFCARCGGR 42 (62)
T ss_dssp CCEECTTSEEE
T ss_pred CCeeecccCCE
Confidence 35799999987
No 128
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=29.66 E-value=16 Score=29.06 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.1
Q ss_pred eeeEEEEccCccc
Q 030778 66 LHRWILKCHACYT 78 (171)
Q Consensus 66 ~k~wvlrC~~C~k 78 (171)
-+.|.++|.||+.
T Consensus 115 ~r~~~l~C~ACGa 127 (170)
T 2g2k_A 115 KQTIGNSCKACGY 127 (170)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCEEEEEccccCC
Confidence 3444455555443
No 129
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=29.66 E-value=48 Score=29.64 Aligned_cols=35 Identities=31% Similarity=0.735 Sum_probs=24.4
Q ss_pred eEEEEccCccccccc-c--CccccCCCCCCCceeEEEE
Q 030778 68 RWILKCHACYTITAE-I--GRIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 68 ~wvlrC~~C~k~~~~-~--~k~fCp~CG~~~TL~Rvsv 102 (171)
.-+..|..|+.+... . ....|+.|++.+.+.+|.+
T Consensus 3 ~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~i 40 (436)
T 3qqc_A 3 TEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEM 40 (436)
T ss_dssp EEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEE
T ss_pred eEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEc
Confidence 456799999986432 1 1357999998656777754
No 130
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=29.32 E-value=33 Score=19.86 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=15.9
Q ss_pred EccCccccccccCccccCCCCCC
Q 030778 72 KCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
.|.+|+.+... .+..|-.||.+
T Consensus 8 ~C~~C~~~Nfa-~R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWA-RRSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCT-TCSBCSSSCCB
T ss_pred ccCCCCCcccc-ccccccccCCc
Confidence 47888876543 46788888875
No 131
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=28.78 E-value=23 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=16.8
Q ss_pred EEEEccCccccccc---------cCccccCCCC
Q 030778 69 WILKCHACYTITAE---------IGRIFCPKCG 92 (171)
Q Consensus 69 wvlrC~~C~k~~~~---------~~k~fCp~CG 92 (171)
+..+|..|++.++. ..-..||.||
T Consensus 298 ~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 298 ATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp TEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred ceeecCCCCCcCCHHHHHHHHhccCCCCCcccc
Confidence 45799999976542 1124799998
No 132
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.36 E-value=22 Score=25.35 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=18.6
Q ss_pred eeEEEEccCccccccccCccccCCCCCC
Q 030778 67 HRWILKCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 67 k~wvlrC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
+....||..|.+...-+..--|. ||+.
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~Cr-Cg~~ 48 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECR-CGNN 48 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECT-TCCE
T ss_pred cccCccchhhCCeecccCCeEcC-CCCE
Confidence 45668999999865443345684 9874
No 133
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=27.71 E-value=5.8 Score=30.51 Aligned_cols=23 Identities=26% Similarity=0.745 Sum_probs=11.6
Q ss_pred EccCcccccccc------CccccCCCCCC
Q 030778 72 KCHACYTITAEI------GRIFCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~------~k~fCp~CG~~ 94 (171)
.|+.|+..-... ...-|..||..
T Consensus 105 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 105 ECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred ECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 599998643222 23468899986
No 134
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.69 E-value=28 Score=25.70 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCceeecCCCCcceeeeeEE-----EEccCccccccccC-ccccCCCCC
Q 030778 40 GDYAMQNVILQMGLRLLAPGGMQIRQLHRWI-----LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 40 dDyAmQNVllqlGL~~~s~~g~~I~~~k~wv-----lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
.|+.-+|..++|...-. ....|+ ..|..|.+.|.-.. +.-|..||.
T Consensus 42 ~e~g~~~~~lq~~~~~~--------~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 42 QELGRENQSLQIKHTQA--------LNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCC
T ss_pred HHHhhhccccccccccc--------CCCccccCCCCCCCcCcCCccccccccccCCCCCe
Confidence 35655666666543211 112565 47999998776433 567888876
No 135
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.67 E-value=30 Score=28.63 Aligned_cols=14 Identities=29% Similarity=0.892 Sum_probs=11.0
Q ss_pred cccCCCCCCCceeEEE
Q 030778 86 IFCPKCGNGGTLRKVA 101 (171)
Q Consensus 86 ~fCp~CG~~~TL~Rvs 101 (171)
+-||.||.+ +.++.
T Consensus 236 ~pC~~CG~~--I~~~~ 249 (266)
T 1ee8_A 236 LPCPACGRP--VERRV 249 (266)
T ss_dssp SBCTTTCCB--CEEEE
T ss_pred CCCCCCCCE--eeEEE
Confidence 669999986 77766
No 136
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=26.20 E-value=12 Score=35.87 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=21.9
Q ss_pred EEccCccccccccC-cc------ccCCCCCCCceeEEEEEeCCCceE
Q 030778 71 LKCHACYTITAEIG-RI------FCPKCGNGGTLRKVAVTVGENGIV 110 (171)
Q Consensus 71 lrC~~C~k~~~~~~-k~------fCp~CG~~~TL~Rvsvsv~~~G~~ 110 (171)
--|..|.+.|.++. |. -||.||=. |.= .+.+|..
T Consensus 157 ~mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~--l~l----~~~~~~~ 197 (772)
T 4g9i_A 157 PMCDFCRSEYEDPLNRRYHAEPTACPVCGPS--YRL----YTSDGQE 197 (772)
T ss_dssp CCCHHHHHHHHCSSSTTTTCTTCCCTTTSCC--EEE----ESSSCBC
T ss_pred CCChhHHHHhCCCCCCCCcCCCCCCccCCce--EEE----EcCCCCe
Confidence 35888888876644 44 49999965 432 3556654
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=26.01 E-value=31 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.689 Sum_probs=13.2
Q ss_pred EccCccccccccC-ccccCCCCC
Q 030778 72 KCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 72 rC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
.|..|.+.+.-.. +.-|..||.
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCC
T ss_pred cccCCCCccCCccccccCCCCCE
Confidence 5777776664322 456666664
No 138
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=25.93 E-value=38 Score=19.44 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=16.4
Q ss_pred EccCccccccccCccccCCCCCC
Q 030778 72 KCHACYTITAEIGRIFCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~k~fCp~CG~~ 94 (171)
.|..|+.+... .+..|-.||.+
T Consensus 7 ~C~~C~~~Nfa-~r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFR-KRLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEET-TCCBCTTTCCB
T ss_pred CcCcCcCCcCh-hcceecCCCCc
Confidence 58888876543 47889999975
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.86 E-value=28 Score=27.53 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=15.6
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 030778 71 LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
..|..|.+.+.-.. +.-|..||.
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~ 185 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQ 185 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CccCCCCCccCCcccccccCCcCC
Confidence 57889987765432 566777775
No 140
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=25.86 E-value=41 Score=22.31 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEccCccccccccCccccCCCCCCCcee
Q 030778 69 WILKCHACYTITAEIGRIFCPKCGNGGTLR 98 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~k~fCp~CG~~~TL~ 98 (171)
-++.|.-|+.--+. .-.-|-+||+. .|+
T Consensus 18 ~k~ICrkC~ARnp~-~A~~CRKCg~~-~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPI-RATKCRRCHST-NLR 45 (56)
T ss_dssp CCEEETTTCCEECT-TCSSCTTTCCC-CEE
T ss_pred chhhhccccCcCCc-ccccccCCCCC-CCC
Confidence 36889999965544 24679999986 665
No 141
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=25.79 E-value=12 Score=35.36 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=17.7
Q ss_pred EccCccccccccC-cc------ccCCCCCC
Q 030778 72 KCHACYTITAEIG-RI------FCPKCGNG 94 (171)
Q Consensus 72 rC~~C~k~~~~~~-k~------fCp~CG~~ 94 (171)
-|..|.+.|.++. |. -||.||=.
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~ 98 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPY 98 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCC
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCcc
Confidence 5999998887753 43 49999975
No 142
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.67 E-value=23 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.3
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
...||+||++
T Consensus 9 ~~~Cp~Cg~~ 18 (50)
T 1tfi_A 9 LFTCGKCKKK 18 (50)
T ss_dssp CSCCSSSCSS
T ss_pred ccCCCCCCCC
Confidence 4579999987
No 143
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.34 E-value=18 Score=24.55 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.4
Q ss_pred ccccCCCCCC
Q 030778 85 RIFCPKCGNG 94 (171)
Q Consensus 85 k~fCp~CG~~ 94 (171)
...||.|+++
T Consensus 8 iL~CP~ck~~ 17 (69)
T 2pk7_A 8 ILACPICKGP 17 (69)
T ss_dssp TCCCTTTCCC
T ss_pred heeCCCCCCc
Confidence 3568888876
No 144
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=25.06 E-value=32 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=15.6
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 030778 71 LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
..|..|.+.+.-.. +.-|..||.
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCcCCcccCccccccCCCCCC
Confidence 36888887765433 567777775
No 145
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.36 E-value=21 Score=25.84 Aligned_cols=8 Identities=50% Similarity=1.294 Sum_probs=6.8
Q ss_pred ccCCCCCC
Q 030778 87 FCPKCGNG 94 (171)
Q Consensus 87 fCp~CG~~ 94 (171)
-||.||.+
T Consensus 10 ~~PlCG~~ 17 (95)
T 2k5c_A 10 KCPICGSP 17 (95)
T ss_dssp ECSSSCCE
T ss_pred cCCcCCCc
Confidence 49999985
No 146
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.31 E-value=32 Score=28.42 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=12.5
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
.+-||.||.+ +.++.+
T Consensus 240 g~pC~~CG~~--I~~~~~ 255 (268)
T 1k82_A 240 GEPCRVCGTP--IVATKH 255 (268)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred CCCCCCCCCE--eeEEEE
Confidence 3679999986 887774
No 147
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.30 E-value=32 Score=28.27 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=12.3
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
.+-||.||.+ +.++.+
T Consensus 234 g~pC~~CG~~--I~~~~~ 249 (262)
T 1k3x_A 234 GEPCERCGSI--IEKTTL 249 (262)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred cCCCCCCCCE--eEEEEE
Confidence 3569999986 887774
No 148
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=24.25 E-value=32 Score=28.41 Aligned_cols=15 Identities=33% Similarity=0.871 Sum_probs=12.2
Q ss_pred cccCCCCCCCceeEEEE
Q 030778 86 IFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 86 ~fCp~CG~~~TL~Rvsv 102 (171)
+-||.||.+ +.++.+
T Consensus 243 ~pC~~CG~~--I~~~~~ 257 (271)
T 2xzf_A 243 EKCSRCGAE--IQKIKV 257 (271)
T ss_dssp SBCTTTCCB--CEEEEE
T ss_pred CCCCCCCCE--eeEEEE
Confidence 679999986 887774
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.01 E-value=31 Score=27.63 Aligned_cols=50 Identities=18% Similarity=0.445 Sum_probs=25.8
Q ss_pred HHHHHHHhCceeecCC---CC-cceeeeeEE--EEccCccccccccC-ccccCCCCC
Q 030778 44 MQNVILQMGLRLLAPG---GM-QIRQLHRWI--LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 44 mQNVllqlGL~~~s~~---g~-~I~~~k~wv--lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
+-+-|+.-|+.+=+++ .+ .-...-.|+ -.|..|.+.+.-.. +.-|..||.
T Consensus 132 ~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~ 188 (226)
T 3zyq_A 132 TYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQ 188 (226)
T ss_dssp HHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCC
T ss_pred HHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcC
Confidence 4455666677763221 00 001112243 47888887665432 566777765
No 150
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=24.00 E-value=33 Score=28.49 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=12.6
Q ss_pred ccccCCCCCCCceeEEEE
Q 030778 85 RIFCPKCGNGGTLRKVAV 102 (171)
Q Consensus 85 k~fCp~CG~~~TL~Rvsv 102 (171)
.+-||.||.+ +.|+.+
T Consensus 245 g~pC~~CG~~--I~~~~~ 260 (273)
T 3u6p_A 245 GNPCKRCGTP--IEKTVV 260 (273)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred cCCCCCCCCe--EEEEEE
Confidence 3679999986 887764
No 151
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.63 E-value=36 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=14.1
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 030778 71 LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
..|..|.+.+.-.. +.-|..||.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~ 44 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGK 44 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CcCcCCCCcccchhhCccccCCCC
Confidence 35888877665332 456666664
No 152
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=23.24 E-value=21 Score=30.61 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=16.4
Q ss_pred EEEccCccc----ccc--ccCccccCCCCCC
Q 030778 70 ILKCHACYT----ITA--EIGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k----~~~--~~~k~fCp~CG~~ 94 (171)
.++|+.|+. +.. .....+|..||--
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 457999985 222 2346789999963
No 153
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=23.02 E-value=52 Score=22.38 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=16.5
Q ss_pred EEccCccccccccCccccCCCCCCCc
Q 030778 71 LKCHACYTITAEIGRIFCPKCGNGGT 96 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~~~T 96 (171)
+-|..|-.- ..-+||..|.++ |
T Consensus 19 M~Cs~C~~~---p~SdfC~~cps~-t 40 (66)
T 2kn0_A 19 MECSVCKNS---EKSDFCQNCPSK-T 40 (66)
T ss_dssp EESTTCSSC---CCCTTTTTCCCC-S
T ss_pred cccCcCCCC---CCcccccCCCCC-C
Confidence 678888753 345899999887 5
No 154
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.98 E-value=21 Score=26.94 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=17.2
Q ss_pred EEEEccCccccccccC--ccccCCCCC
Q 030778 69 WILKCHACYTITAEIG--RIFCPKCGN 93 (171)
Q Consensus 69 wvlrC~~C~k~~~~~~--k~fCp~CG~ 93 (171)
-...|..|..+..... ..-||.||+
T Consensus 15 ~lrAC~~C~~V~t~~qF~~~gCpnC~~ 41 (120)
T 3h7h_A 15 HLRACLLCSLVKTIDQFEYDGCDNCDA 41 (120)
T ss_dssp TEEEETTTCBEEEHHHHHHHCCTTTHH
T ss_pred cCeeeccCCceechhhccCCCCCCCcc
Confidence 3578999998864320 123999995
No 155
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=22.83 E-value=18 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=17.5
Q ss_pred eEEEEEeCCCceEEeccCcccccccceeecCC
Q 030778 98 RKVAVTVGENGIVLASRRPRITLRGTKFSLPM 129 (171)
Q Consensus 98 ~Rvsvsv~~~G~~~~~~~~~~n~RG~~ySlPk 129 (171)
..|.+.+-.+|.+++.+++... .+..|++|.
T Consensus 209 ~~v~~vv~~~~~vLL~~r~~~~-~~g~w~lPg 239 (352)
T 2qjt_B 209 VTVDALVIVNDHILMVQRKAHP-GKDLWALPG 239 (352)
T ss_dssp EEEEEEEEETTEEEEEEESSSS-STTCEECSE
T ss_pred eEEEEEEEECCEEEEEEEcCCC-CCCeEECCC
Confidence 3455555577887766554322 235688863
No 156
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=22.66 E-value=77 Score=25.92 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=23.1
Q ss_pred cccCCCCCCCceeEEEEEeCCCceEEeccCcccccccceeecCCCC
Q 030778 86 IFCPKCGNGGTLRKVAVTVGENGIVLASRRPRITLRGTKFSLPMPQ 131 (171)
Q Consensus 86 ~fCp~CG~~~TL~Rvsvsv~~~G~~~~~~~~~~n~RG~~ySlPkpk 131 (171)
-.||.||.+ |.++|+.+|... ++..+.+-|++.|.
T Consensus 115 S~Cp~tG~p-----I~ltv~~~~i~~------~~P~~avVs~v~~~ 149 (220)
T 3f2g_A 115 SHCAATGAP-----VSLTVSPSEIQA------VEPAGMAVSLVLPQ 149 (220)
T ss_dssp EECTTTCCE-----EEEEECSSCEEE------EESTTCEEEECCCC
T ss_pred ecCCCCCCe-----EEEEEcCCceee------cCCCceEEEEecCc
Confidence 459999998 777788876542 23445555656554
No 157
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.54 E-value=43 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.679 Sum_probs=16.2
Q ss_pred EEccCccccccccCccccCCCCC
Q 030778 71 LKCHACYTITAEIGRIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~k~fCp~CG~ 93 (171)
..|.-|.+.-+.+ ..+|..|=.
T Consensus 12 WkC~~C~k~N~Pl-~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPS-KRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSS-CCBCTTTCC
T ss_pred eecccccccCCCc-cchhHHHHH
Confidence 3699999776654 468999963
No 158
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=22.45 E-value=41 Score=29.23 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=26.0
Q ss_pred eEEEEccC--cccccccc--CccccCCCCCC--Cc--eeEEEEEeC-CCceE
Q 030778 68 RWILKCHA--CYTITAEI--GRIFCPKCGNG--GT--LRKVAVTVG-ENGIV 110 (171)
Q Consensus 68 ~wvlrC~~--C~k~~~~~--~k~fCp~CG~~--~T--L~Rvsvsv~-~~G~~ 110 (171)
-|-..|+. |.|.-.+. ..-.|++||.. .. .-++++.+. ..|.+
T Consensus 306 ~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~ 357 (444)
T 4gop_C 306 LYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQM 357 (444)
T ss_dssp CEEEECCSTTCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEE
T ss_pred eEEccCCcccCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCE
Confidence 46689998 99765432 24689999942 01 234455554 34665
No 159
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=22.43 E-value=41 Score=27.29 Aligned_cols=29 Identities=7% Similarity=-0.256 Sum_probs=19.5
Q ss_pred EEEccCccccccc---c--CccccCCCCCCCceeE
Q 030778 70 ILKCHACYTITAE---I--GRIFCPKCGNGGTLRK 99 (171)
Q Consensus 70 vlrC~~C~k~~~~---~--~k~fCp~CG~~~TL~R 99 (171)
...|+.|+++|.. + ....|+.||.+ ...|
T Consensus 131 R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~-L~~R 164 (230)
T 3gmt_A 131 RRTHPASGRTYHVKFNPPKVEGKDDVTGEP-LVQR 164 (230)
T ss_dssp EEEETTTTEEEETTTBCCSSTTBCTTTCCB-CBCC
T ss_pred CCcccccCCcccccCCCCCccCcCCCccCc-cccC
Confidence 3569999987732 1 23579999997 4443
No 160
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.01 E-value=40 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=12.6
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 030778 71 LKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 71 lrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
..|..|.+.+.-.. +.-|..||.
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCC
T ss_pred CCCcCcCCccccchhcccccCCCc
Confidence 35777776654332 445555554
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.72 E-value=18 Score=28.38 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=6.9
Q ss_pred cccCCCCCC
Q 030778 86 IFCPKCGNG 94 (171)
Q Consensus 86 ~fCp~CG~~ 94 (171)
.+||.|+.+
T Consensus 244 ~~cP~~~~~ 252 (281)
T 2c2l_A 244 HFNPVTRSP 252 (281)
T ss_dssp SSCTTTCCC
T ss_pred CCCcCCCCC
Confidence 359999886
No 162
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.66 E-value=37 Score=25.27 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=14.0
Q ss_pred EEEccCccccccccC-ccccCCCCC
Q 030778 70 ILKCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 70 vlrC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
...|.+|...+.-.. +.-|..||.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred cCcccCcCCccccccccccCCCCCC
Confidence 357888887664332 455666664
No 163
>3iz5_r 60S ribosomal protein L42 (L44E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_r 2zkr_4 3izc_r 3izs_r 3o58_f 3o5h_f 3u5e_o 3u5i_o 4b6a_o 1s1i_Z 3j0o_F 3j0l_F 3jyw_Z
Probab=21.27 E-value=44 Score=24.65 Aligned_cols=18 Identities=33% Similarity=0.743 Sum_probs=15.0
Q ss_pred cccc--CCCCCCCceeEEEEE
Q 030778 85 RIFC--PKCGNGGTLRKVAVT 103 (171)
Q Consensus 85 k~fC--p~CG~~~TL~Rvsvs 103 (171)
+-|| |.|+.. |+.+|+-+
T Consensus 9 ~tyC~~p~C~kH-t~HkVtqy 28 (105)
T 3iz5_r 9 KTYCKNKECRKH-TLHKVTQY 28 (105)
T ss_dssp EECCCSTTTCSC-EEEEEEEC
T ss_pred eeccCCCCCCCC-ccEEEEEe
Confidence 5799 999998 99988854
No 164
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.20 E-value=48 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.831 Sum_probs=11.9
Q ss_pred EccCccccccccC-ccccCCCCC
Q 030778 72 KCHACYTITAEIG-RIFCPKCGN 93 (171)
Q Consensus 72 rC~~C~k~~~~~~-k~fCp~CG~ 93 (171)
.|..|.+.+.-.. +.-|-.||.
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCC
T ss_pred cCcCcCCccccchhhhhhcCCCc
Confidence 4677766554322 455555554
No 165
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.18 E-value=57 Score=19.91 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.2
Q ss_pred EEEccCccccccc-------------cCccccCCCCCC
Q 030778 70 ILKCHACYTITAE-------------IGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k~~~~-------------~~k~fCp~CG~~ 94 (171)
.+.|.-|.+.+.. .....|+.||..
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 51 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKA 51 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCE
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcc
Confidence 3678888877642 112468888864
No 166
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.00 E-value=23 Score=28.92 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=14.9
Q ss_pred EEEccCccc----ccc--ccCccccCCCCCC
Q 030778 70 ILKCHACYT----ITA--EIGRIFCPKCGNG 94 (171)
Q Consensus 70 vlrC~~C~k----~~~--~~~k~fCp~CG~~ 94 (171)
.++|+.|+. +.. .....+|..||--
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 346888876 222 2335678888863
Done!