Query 030780
Match_columns 171
No_of_seqs 178 out of 655
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 100.0 2.9E-33 6.2E-38 226.6 7.1 104 8-111 49-152 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 1.2E-30 2.7E-35 189.6 10.5 92 15-106 3-94 (94)
3 KOG1726 HVA22/DP1 gene product 100.0 1.2E-28 2.7E-33 204.5 11.7 107 17-123 2-111 (225)
4 COG5052 YOP1 Protein involved 99.8 3.3E-21 7.2E-26 154.8 9.5 92 19-110 61-152 (186)
5 KOG1726 HVA22/DP1 gene product 82.8 27 0.00059 29.6 11.0 105 5-110 37-164 (225)
6 smart00648 SWAP Suppressor-of- 61.1 15 0.00033 23.5 3.6 30 129-158 2-31 (54)
7 PF01805 Surp: Surp module; I 56.7 18 0.0004 23.2 3.4 30 129-158 3-32 (55)
8 PF09726 Macoilin: Transmembra 45.5 37 0.0008 33.2 4.9 59 46-104 28-114 (697)
9 PF01372 Melittin: Melittin; 26.0 68 0.0015 18.1 1.9 18 4-21 1-18 (26)
10 CHL00186 psaI photosystem I su 25.2 39 0.00084 20.7 0.9 18 15-32 5-22 (36)
11 PRK11877 psaI photosystem I re 25.1 84 0.0018 19.4 2.4 21 12-32 6-26 (38)
12 PF09119 SicP-binding: SicP bi 22.8 1E+02 0.0022 22.1 2.9 52 104-158 17-68 (81)
13 PF03008 DUF234: Archaea bacte 21.0 96 0.0021 22.1 2.5 40 128-167 18-57 (100)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.9e-33 Score=226.61 Aligned_cols=104 Identities=49% Similarity=0.957 Sum_probs=100.1
Q ss_pred HHHHHHHhchhhhHhHHHhHhhHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHhh
Q 030780 8 FLKVLLKNFDVLAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYAKLIFTCWLV 87 (171)
Q Consensus 8 ~~~~~~~~~~~l~~~~ig~lYPayaS~kal~s~~~~d~~~WL~YWvvy~~~~~~E~~~~~il~wiPfY~~~Kl~fl~wL~ 87 (171)
.+.++++++..++|+++|++||+|+|++|||++++.||+|||+||++||+++++|.+...+++|+|+|+++|++|++||+
T Consensus 49 ~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~ 128 (186)
T KOG1725|consen 49 AVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLV 128 (186)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhhcccccCccc
Q 030780 88 IPQFSGAAYVYEHYLRPFFLNPQT 111 (171)
Q Consensus 88 ~P~~~GA~~iY~~~i~P~l~~~~~ 111 (171)
+|+++||..+|++++||++.+++.
T Consensus 129 lP~~~Ga~~iY~~~vrp~~~~~~~ 152 (186)
T KOG1725|consen 129 LPQFNGAAIIYNHIVRPFFLKHSR 152 (186)
T ss_pred ccCCCCceeeechhhhhhhhhhhh
Confidence 999999999999999999988873
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=1.2e-30 Score=189.55 Aligned_cols=92 Identities=40% Similarity=0.930 Sum_probs=89.1
Q ss_pred hchhhhHhHHHhHhhHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHhhcCCCCcH
Q 030780 15 NFDVLAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGA 94 (171)
Q Consensus 15 ~~~~l~~~~ig~lYPayaS~kal~s~~~~d~~~WL~YWvvy~~~~~~E~~~~~il~wiPfY~~~Kl~fl~wL~~P~~~GA 94 (171)
...+++|+++|++||+|+|+|+++++++++.++||+||+++|+++++|.+++.+++|+|+|+++|+++++||.+|+++||
T Consensus 3 ~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~Ga 82 (94)
T PF03134_consen 3 FIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQGA 82 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCcH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 030780 95 AYVYEHYLRPFF 106 (171)
Q Consensus 95 ~~iY~~~i~P~l 106 (171)
.++|+++++|++
T Consensus 83 ~~iy~~~i~P~~ 94 (94)
T PF03134_consen 83 EYIYDKFIRPFL 94 (94)
T ss_pred HHHHHHHccccC
Confidence 999999999985
No 3
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.96 E-value=1.2e-28 Score=204.55 Aligned_cols=107 Identities=34% Similarity=0.686 Sum_probs=96.5
Q ss_pred hhhhHhHHHhHhhHHHHHHHhhc--CChhhhhhHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHhhcCCCCcH
Q 030780 17 DVLAGPVVSLVYPLYASVRAIET--KSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGA 94 (171)
Q Consensus 17 ~~l~~~~ig~lYPayaS~kal~s--~~~~d~~~WL~YWvvy~~~~~~E~~~~~il~wiPfY~~~Kl~fl~wL~~P~~~GA 94 (171)
.++...++|.+||||+|+|++++ ++..+...|++||||+|+++++|.++|.+++|+|||+++|++|++||..|.++|+
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~ 81 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA 81 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence 35667899999999999999999 6678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCccc-hhhhcccccccc
Q 030780 95 AYVYEHYLRPFFLNPQT-INIWYVPRKKDV 123 (171)
Q Consensus 95 ~~iY~~~i~P~l~~~~~-~~~~~~~~k~~~ 123 (171)
.+||+.++||++.++|. +|...++.|.++
T Consensus 82 ~~vY~~f~~p~ls~~E~eid~~l~~~k~~~ 111 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEEEIDRMLVEAKERV 111 (225)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998875 666555555433
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.85 E-value=3.3e-21 Score=154.83 Aligned_cols=92 Identities=25% Similarity=0.492 Sum_probs=89.3
Q ss_pred hhHhHHHhHhhHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHhhcCCCCcHHHHH
Q 030780 19 LAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGAAYVY 98 (171)
Q Consensus 19 l~~~~ig~lYPayaS~kal~s~~~~d~~~WL~YWvvy~~~~~~E~~~~~il~wiPfY~~~Kl~fl~wL~~P~~~GA~~iY 98 (171)
+..+++|+..|++.|.+++++.++.|++|||+||+|+|+.+++|..+..+++|+|+|+..|.+|++|+..|+|+||..+|
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY 140 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIY 140 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeH
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCcc
Q 030780 99 EHYLRPFFLNPQ 110 (171)
Q Consensus 99 ~~~i~P~l~~~~ 110 (171)
+++++|+..++.
T Consensus 141 ~~~i~p~~s~~~ 152 (186)
T COG5052 141 DDIIAPDVSDHG 152 (186)
T ss_pred HhhccccccHHH
Confidence 999999998774
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=82.83 E-value=27 Score=29.58 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=85.6
Q ss_pred hhhHHHHHHHhchhhhHhHHHhHhhHHHHHHHhh-----c------------------CChhhhhhHHHHHHHHHHHHHH
Q 030780 5 AGSFLKVLLKNFDVLAGPVVSLVYPLYASVRAIE-----T------------------KSPTDDRQWLTYWILYSMITLV 61 (171)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~ig~lYPayaS~kal~-----s------------------~~~~d~~~WL~YWvvy~~~~~~ 61 (171)
|.+++..++-.++.+.-.++. -.|.|.=+|..- + ...+++..-+.+|....++..+
T Consensus 37 ~YWIv~A~~t~~e~~~d~~ls-w~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a 115 (225)
T KOG1726|consen 37 MYWIVFAALTVFETLTDFLLS-WFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAA 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777776666 778888888642 0 1235677889999999999999
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhhcCCCCcHHHHHHHhhcccccCcc
Q 030780 62 ELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNPQ 110 (171)
Q Consensus 62 E~~~~~il~wiPfY~~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~l~~~~ 110 (171)
+.+....+.|-+.|-.=+..+..|...|..+++...++.-..|....+.
T Consensus 116 ~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~ 164 (225)
T KOG1726|consen 116 VSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKK 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccc
Confidence 9999999999999999999999999999999999999999999885554
No 6
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=61.13 E-value=15 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
+++..+.+++.++|++.-+++++.....++
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~ 31 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQ 31 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCC
Confidence 356678889999999877777777655444
No 7
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=56.70 E-value=18 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
+++..+.+++.++|++.-+.++++....++
T Consensus 3 ~~I~~tA~~Va~~G~~fE~~l~~~~~~np~ 32 (55)
T PF01805_consen 3 EIIDKTAEFVAKNGPEFEEKLRERERNNPQ 32 (55)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHTTTSGG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcCCCCC
Confidence 456778889999999877777776655554
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.53 E-value=37 Score=33.16 Aligned_cols=59 Identities=19% Similarity=0.602 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH-----------------------HHHHhhcCC----CCcHHHH
Q 030780 46 RQWLTYWILYSMITLVELTFAKVIE-WIPIWSYAKLI-----------------------FTCWLVIPQ----FSGAAYV 97 (171)
Q Consensus 46 ~~WL~YWvvy~~~~~~E~~~~~il~-wiPfY~~~Kl~-----------------------fl~wL~~P~----~~GA~~i 97 (171)
-..+.+=++.+++.++|.++++-+. ..|+|-+++.+ ++||+++|. |-++.||
T Consensus 28 ~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 28 FLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455555666777777777776554 34887776543 356777775 6778887
Q ss_pred HHHhhcc
Q 030780 98 YEHYLRP 104 (171)
Q Consensus 98 Y~~~i~P 104 (171)
+-.+|..
T Consensus 108 ~~~~~~~ 114 (697)
T PF09726_consen 108 WVQYVWH 114 (697)
T ss_pred HHHHhhh
Confidence 7776653
No 9
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=26.02 E-value=68 Score=18.12 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=10.9
Q ss_pred chhhHHHHHHHhchhhhH
Q 030780 4 GAGSFLKVLLKNFDVLAG 21 (171)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~ 21 (171)
|.|++|++++.-+-.+++
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 456888887765544443
No 10
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=25.23 E-value=39 Score=20.71 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=14.1
Q ss_pred hchhhhHhHHHhHhhHHH
Q 030780 15 NFDVLAGPVVSLVYPLYA 32 (171)
Q Consensus 15 ~~~~l~~~~ig~lYPaya 32 (171)
++-....+++|++.||..
T Consensus 5 ~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 5 NLPSILVPLVGLVFPAIA 22 (36)
T ss_pred cCchhHHhHHHHHHHHHH
Confidence 455667799999999964
No 11
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=25.14 E-value=84 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.3
Q ss_pred HHHhchhhhHhHHHhHhhHHH
Q 030780 12 LLKNFDVLAGPVVSLVYPLYA 32 (171)
Q Consensus 12 ~~~~~~~l~~~~ig~lYPaya 32 (171)
.+.++-.+..+++|++.||..
T Consensus 6 aas~LPsI~VPlVGlvfPai~ 26 (38)
T PRK11877 6 AASWLPWIFVPLVGWVFPAVF 26 (38)
T ss_pred hHHhCchHHHHHHHHHHHHHH
Confidence 345666777899999999964
No 12
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=22.83 E-value=1e+02 Score=22.12 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=28.7
Q ss_pred ccccCccchhhhcccccccccCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 104 PFFLNPQTINIWYVPRKKDVFSRPDDILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 104 P~l~~~~~~~~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
|+|+|.+.+....+..+. ++..-+....+...+++|+++..+++....-+..
T Consensus 17 PLlkN~~AVq~~~e~~~~---~nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~ 68 (81)
T PF09119_consen 17 PLLKNTNAVQKYVENQRV---ENQKTLQVFLEALAERYGEETANKVLDKMDLSGG 68 (81)
T ss_dssp --TT-HHHHHHHHHCS-----S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH---
T ss_pred cccccHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCC
Confidence 777777766543333221 1222345556666779999999999998776543
No 13
>PF03008 DUF234: Archaea bacterial proteins of unknown function; InterPro: IPR004256 This represents a C-terminal domain of unknown function, usually fused to a prokaryotic putative DEXX-box ATPase domain (IPR011579 from INTERPRO) [].
Probab=20.95 E-value=96 Score=22.13 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHhhccccCCCCcccc
Q 030780 128 DDILTAAEKYMEENGTDAFEKLIHRADKSKRNYDHSTYEY 167 (171)
Q Consensus 128 ~d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k~~~~~~~~~ 167 (171)
+.+...+.+.+.++-..+||++.+.........+.-.+.+
T Consensus 18 ~~~~~~i~~~l~~y~g~~fE~i~r~~l~~~~~~~~lp~~~ 57 (100)
T PF03008_consen 18 EAVYEKIKPELNQYMGFAFEEICREYLRRLNRAGKLPFPF 57 (100)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccCCCCce
Confidence 3456677777788888899999998888776655544443
Done!