Query 030780
Match_columns 171
No_of_seqs 178 out of 655
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt7_B Splicing factor 3 subun 47.6 19 0.00066 24.8 3.6 39 129-167 33-75 (85)
2 2dt6_A Splicing factor 3 subun 32.9 42 0.0014 21.5 3.3 30 129-158 5-34 (64)
3 2e60_A SFRS8 protein, splicing 23.2 73 0.0025 22.4 3.4 31 128-158 28-58 (101)
4 1ug0_A Splicing factor 4; SURP 19.8 1.3E+02 0.0044 20.4 4.0 30 129-158 29-58 (88)
5 1x4o_A Splicing factor 4; stru 19.1 1E+02 0.0035 20.4 3.2 30 129-158 19-48 (78)
6 1jb0_I Photosystem 1 reaction 19.0 67 0.0023 19.0 2.0 18 15-32 9-26 (38)
7 3qrx_B Melittin; calcium-bindi 17.8 81 0.0028 17.0 2.0 17 4-20 1-17 (26)
8 2kl8_A OR15; structural genomi 16.2 55 0.0019 21.9 1.3 27 142-168 11-38 (85)
9 1iie_A Protein (HLA-DR antigen 14.0 89 0.0031 21.1 1.9 13 44-56 47-59 (75)
10 1fmt_A Methionyl-tRNA FMet for 13.2 2.1E+02 0.0071 23.6 4.4 76 87-163 113-199 (314)
No 1
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=47.65 E-value=19 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.539 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc----cCCCCcccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR----NYDHSTYEY 167 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k----~~~~~~~~~ 167 (171)
+++...++++.++|.+-.+.++++.....+ ..+|+-+.|
T Consensus 33 ~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~y 75 (85)
T 2dt7_B 33 DVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNY 75 (85)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHH
Confidence 788999999999999888888777655555 335555443
No 2
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=32.89 E-value=42 Score=21.46 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
+++....+++.++|++--+++++......+
T Consensus 5 ~iI~ktA~fVarnG~~fE~~l~~~e~~np~ 34 (64)
T 2dt6_A 5 NIVDKTASFVARNGPEFEARIRQNEINNPK 34 (64)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhccCCCC
Confidence 567788899999999887777776655554
No 3
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.23 E-value=73 Score=22.40 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 128 DDILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 128 ~d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
-+++....+++.++|++.-.+++++.....+
T Consensus 28 ~~iI~ktA~fVarnG~~FE~~l~~re~~Np~ 58 (101)
T 2e60_A 28 HAIIERTASFVCRQGAQFEIMLKAKQARNSQ 58 (101)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHTTSCST
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHccccCCC
Confidence 3678888999999998877777766655444
No 4
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=19.76 E-value=1.3e+02 Score=20.44 Aligned_cols=30 Identities=7% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
.++....+++.++|++.-++++++.....|
T Consensus 29 ~iIdktA~fVaknG~~FE~~l~~~e~~Npk 58 (88)
T 1ug0_A 29 RVIEKLARFVAEGGPELEKVAMEDYKDNPA 58 (88)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhcCCCCC
Confidence 567788899999998877777766544443
No 5
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=19.08 E-value=1e+02 Score=20.44 Aligned_cols=30 Identities=3% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
.++....+++.++|++.-+++++......|
T Consensus 19 ~iIdktA~fVaknG~~fE~~l~~~~~~Np~ 48 (78)
T 1x4o_A 19 NLAEKLARFIADGGPEVETIALQNNRENQA 48 (78)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhcCCCCC
Confidence 567788899999998877777776555444
No 6
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=19.00 E-value=67 Score=19.01 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=13.9
Q ss_pred hchhhhHhHHHhHhhHHH
Q 030780 15 NFDVLAGPVVSLVYPLYA 32 (171)
Q Consensus 15 ~~~~l~~~~ig~lYPaya 32 (171)
++-.+..+++|++.||..
T Consensus 9 ~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp THHHHHHHHHHTHHHHHH
T ss_pred hCChhhHhHHHHHHHHHH
Confidence 445567799999999964
No 7
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=17.81 E-value=81 Score=16.95 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=10.2
Q ss_pred chhhHHHHHHHhchhhh
Q 030780 4 GAGSFLKVLLKNFDVLA 20 (171)
Q Consensus 4 ~~~~~~~~~~~~~~~l~ 20 (171)
|.|+.|++++.-+-.++
T Consensus 1 giGa~LKVLa~~LP~li 17 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALI 17 (26)
T ss_pred CchHHHHHHHccchHHH
Confidence 34578888765544443
No 8
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=16.25 E-value=55 Score=21.92 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhhccccC-CCCccccC
Q 030780 142 GTDAFEKLIHRADKSKRNY-DHSTYEYD 168 (171)
Q Consensus 142 G~~a~e~~i~~~~~~~k~~-~~~~~~~~ 168 (171)
..|||||++....++|++- ++-+|..|
T Consensus 11 dleafekalkemirqarkfagtvtytld 38 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQARKFAGTVTYTLD 38 (85)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHhhcceEEEEec
Confidence 3578888888888888753 55566554
No 9
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=13.98 E-value=89 Score=21.13 Aligned_cols=13 Identities=23% Similarity=0.871 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHH
Q 030780 44 DDRQWLTYWILYS 56 (171)
Q Consensus 44 d~~~WL~YWvvy~ 56 (171)
....|+.+|.+|-
T Consensus 47 ~FEsWM~~WLLFe 59 (75)
T 1iie_A 47 VFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4678999998864
No 10
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=13.21 E-value=2.1e+02 Score=23.62 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=43.9
Q ss_pred hcCCCCcHHHHHHHhhcccc--------cCccchhhhcccccccccCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhc--
Q 030780 87 VIPQFSGAAYVYEHYLRPFF--------LNPQTINIWYVPRKKDVFSRPDDILTAAEKYMEENGTDAFEKLIHRADKS-- 156 (171)
Q Consensus 87 ~~P~~~GA~~iY~~~i~P~l--------~~~~~~~~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~a~e~~i~~~~~~-- 156 (171)
.+|.++|+.-+...++.--= .+ +.+|..=.-.++.+--..+|......+.+.+.|.+.+.+.++...+.
T Consensus 113 LLP~yRG~~pi~~Ai~~G~~~tGvTih~~~-~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~ 191 (314)
T 1fmt_A 113 LLPRWRGAAPIQRSLWAGDAETGVTIMQMD-VGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTA 191 (314)
T ss_dssp STTTTBSSCHHHHHHHHTCSEEEEEEEECC-SSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCcCCCCcCHHHHHHHcCCCceEEEEEEEc-ccCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35889999988887765310 00 12222211112222223446666666778888999999988877543
Q ss_pred -cccCCCC
Q 030780 157 -KRNYDHS 163 (171)
Q Consensus 157 -~k~~~~~ 163 (171)
..+|+++
T Consensus 192 ~~~~Q~~~ 199 (314)
T 1fmt_A 192 KPEVQDET 199 (314)
T ss_dssp CCBCCCGG
T ss_pred ceecCCcc
Confidence 3455544
Done!