Query 030780
Match_columns 171
No_of_seqs 178 out of 655
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 06:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030780.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030780hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dt7b1 a.217.1.1 (B:134-217) 52.6 6.8 0.00049 25.2 3.6 30 129-158 32-61 (84)
2 d1x4oa1 a.217.1.1 (A:8-72) Spl 32.3 17 0.0012 21.9 2.8 31 128-158 11-41 (65)
3 d2dt6a1 a.217.1.1 (A:48-110) S 31.5 21 0.0016 21.4 3.3 30 129-158 4-33 (63)
4 d2hzaa1 a.43.1.3 (A:1-48) Nick 28.0 29 0.0021 19.9 3.3 37 125-161 7-47 (48)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 20.5 27 0.002 17.6 1.8 17 19-35 6-22 (27)
6 d1fmta2 c.65.1.1 (A:1-206) Met 20.0 53 0.0038 23.2 4.1 76 88-163 114-199 (206)
7 d1ug0a_ a.217.1.1 (A:) Splicin 18.2 70 0.0051 20.1 4.0 30 129-158 29-58 (88)
8 d1iiea_ a.109.1.1 (A:) Class I 14.3 41 0.003 21.2 1.9 13 44-56 47-59 (75)
9 d1nekd_ f.21.2.2 (D:) Succinat 12.8 21 0.0015 23.6 0.0 33 73-105 53-85 (113)
10 d1khva_ e.8.1.4 (A:) Viral RNA 12.7 87 0.0063 25.4 4.1 39 131-169 449-487 (497)
No 1
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.56 E-value=6.8 Score=25.21 Aligned_cols=30 Identities=13% Similarity=0.492 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
|++..+++++.++|.+..++++++....++
T Consensus 32 ~iI~~tA~fVa~~G~~fe~~l~~~~~~Np~ 61 (84)
T d2dt7b1 32 DVVKLTAQFVARNGRQFLTQLMQKEQRNYQ 61 (84)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcccCCCc
Confidence 688999999999999877777666555444
No 2
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.26 E-value=17 Score=21.95 Aligned_cols=31 Identities=3% Similarity=0.269 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 128 DDILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 128 ~d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
.+++..+.+++.++|++.-+.+++......+
T Consensus 11 ~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~ 41 (65)
T d1x4oa1 11 KNLAEKLARFIADGGPEVETIALQNNRENQA 41 (65)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhccCCCC
Confidence 4667888899999999866666655444443
No 3
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.47 E-value=21 Score=21.37 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
.++....+++.++|++.-+++++......+
T Consensus 4 ~iI~~tA~fVak~G~~fE~~l~~~e~~np~ 33 (63)
T d2dt6a1 4 NIVDKTASFVARNGPEFEARIRQNEINNPK 33 (63)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHhccCCCc
Confidence 456778889999999866666555444444
No 4
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.95 E-value=29 Score=19.93 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHHhC----HHHHHHHHHHHhhccccCC
Q 030780 125 SRPDDILTAAEKYMEENG----TDAFEKLIHRADKSKRNYD 161 (171)
Q Consensus 125 ~~~~d~~~~~~~~i~~~G----~~a~e~~i~~~~~~~k~~~ 161 (171)
+..++++...++.+++.| +||...+|+....+.+...
T Consensus 7 slp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~~~~~~e 47 (48)
T d2hzaa1 7 TLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQ 47 (48)
T ss_dssp EECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhHhc
Confidence 346788999999999877 6788888887776655443
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.49 E-value=27 Score=17.60 Aligned_cols=17 Identities=18% Similarity=0.381 Sum_probs=12.6
Q ss_pred hhHhHHHhHhhHHHHHH
Q 030780 19 LAGPVVSLVYPLYASVR 35 (171)
Q Consensus 19 l~~~~ig~lYPayaS~k 35 (171)
....+.|+.|.||+.+|
T Consensus 6 i~~tl~glf~aayqqyk 22 (27)
T d2e74g1 6 VFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 34467788998888775
No 6
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=53 Score=23.15 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=44.5
Q ss_pred cCCCCcHHHHHHHhhccccc---C-c---cchhhhcccccccccCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhc---c
Q 030780 88 IPQFSGAAYVYEHYLRPFFL---N-P---QTINIWYVPRKKDVFSRPDDILTAAEKYMEENGTDAFEKLIHRADKS---K 157 (171)
Q Consensus 88 ~P~~~GA~~iY~~~i~P~l~---~-~---~~~~~~~~~~k~~~~~~~~d~~~~~~~~i~~~G~~a~e~~i~~~~~~---~ 157 (171)
+|..+|+.-+...++..--. . | +.+|.+-.-.++.+--..+|......+.+.+.+.+.+.+.++...+. .
T Consensus 114 LP~yRG~~pi~wai~nge~~~GvT~h~i~~~iD~G~Ii~q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~~~~~~ 193 (206)
T d1fmta2 114 LPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKP 193 (206)
T ss_dssp TTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hHhhhhhhhhhhHHHcCCceeceeEEEeccccChHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 68899998888887753210 0 0 12333222222333334455566666667788888888887777543 4
Q ss_pred ccCCCC
Q 030780 158 RNYDHS 163 (171)
Q Consensus 158 k~~~~~ 163 (171)
++|+++
T Consensus 194 ~~Q~~~ 199 (206)
T d1fmta2 194 EVQDET 199 (206)
T ss_dssp BCCCGG
T ss_pred ecCCCC
Confidence 467765
No 7
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.18 E-value=70 Score=20.11 Aligned_cols=30 Identities=7% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccc
Q 030780 129 DILTAAEKYMEENGTDAFEKLIHRADKSKR 158 (171)
Q Consensus 129 d~~~~~~~~i~~~G~~a~e~~i~~~~~~~k 158 (171)
.++..+.+++.++|++.-++++++.....+
T Consensus 29 ~iI~~tA~~Vak~G~~fE~~l~~k~~~np~ 58 (88)
T d1ug0a_ 29 RVIEKLARFVAEGGPELEKVAMEDYKDNPA 58 (88)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhccCCCC
Confidence 567888999999999966666554433333
No 8
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.30 E-value=41 Score=21.21 Aligned_cols=13 Identities=23% Similarity=0.871 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHH
Q 030780 44 DDRQWLTYWILYS 56 (171)
Q Consensus 44 d~~~WL~YWvvy~ 56 (171)
+...|+.+|.+|-
T Consensus 47 ~FEsWM~~WLlFe 59 (75)
T d1iiea_ 47 VFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4688999998864
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=12.83 E-value=21 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHhhccc
Q 030780 73 PIWSYAKLIFTCWLVIPQFSGAAYVYEHYLRPF 105 (171)
Q Consensus 73 PfY~~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~ 105 (171)
|.-..+=+++++-+......|-..|-+.+++|-
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~ 85 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCCh
Confidence 444445555555555556678888888888863
No 10
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=12.74 E-value=87 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHhhccccCCCCccccCC
Q 030780 131 LTAAEKYMEENGTDAFEKLIHRADKSKRNYDHSTYEYDN 169 (171)
Q Consensus 131 ~~~~~~~i~~~G~~a~e~~i~~~~~~~k~~~~~~~~~~~ 169 (171)
+..+-...-.||+|.++++.+...++++..+..-++||.
T Consensus 449 l~~~~~ea~~hg~e~y~~~~~~i~~~~~~~~~~~~~~~~ 487 (497)
T d1khva_ 449 LEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYSYDA 487 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCCCCCCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 444555566799999999999999988888888888763
Done!