BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030782
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 44 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQR 100
A+ Q D+H+L ER RR I++R+K L L+P N K +L ++YI+ LQR
Sbjct: 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81
Query: 101 Q------VEFLSMKLEAVNSRMNL 118
+ +E KLE N + L
Sbjct: 82 EQQRAKDLENRQKKLEHANRHLLL 105
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 46 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ 99
RG+ +H+ E+ R I++++ L+DLV G + K+ VL + I+YI+ LQ
Sbjct: 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQ 56
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 53 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVEFLSMKLE 110
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+V L ++
Sbjct: 8 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 53 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 101
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 16 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINY 94
+Y + R A ++HS E+ RR+K++ + L LVP CN + + K VL + +
Sbjct: 2 EYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH 61
Query: 95 IQSLQ 99
+++L+
Sbjct: 62 MKTLR 66
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 53 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 101
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 7 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 53 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 101
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 5 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 53 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 101
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 6 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
Structure Of Human Clock-bmal1 Basic Helix-loop-helix
Domains With E-box Dna
Length = 73
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 49 ATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQ 99
A ++HS E+ RR+K++ + L LVP CN + + K VL + ++++L+
Sbjct: 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 40 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK-----ALVLDEIINY 94
IHV + +DS +LAERA +S +KI D+ P ++ GK + + EI ++
Sbjct: 259 IHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICHW 317
Query: 95 IQS 97
I +
Sbjct: 318 ISA 320
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 40 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK-----ALVLDEIINY 94
IHV + +DS +LAERA +S +KI D+ P ++ GK + + EI ++
Sbjct: 245 IHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICHW 303
Query: 95 IQS 97
I +
Sbjct: 304 ISA 306
>pdb|1J79|A Chain A, Molecular Structure Of Dihydroorotase: A Paradigm For
Catalysis Through The Use Of A Binuclear Metal Center
pdb|1J79|B Chain B, Molecular Structure Of Dihydroorotase: A Paradigm For
Catalysis Through The Use Of A Binuclear Metal Center
Length = 347
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAPHDFTPLMTCY 79
>pdb|3JZE|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
Length = 372
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + I ++ + + L+AV + + TP + +
Sbjct: 49 MLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCY 104
>pdb|2Z2A|A Chain A, Thr109gly Dihydroorotase From E. Coli
pdb|2Z2A|B Chain B, Thr109gly Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z24|A Chain A, Thr110ser Dihydroorotase From E. Coli
pdb|2Z24|B Chain B, Thr110ser Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2E25|A Chain A, The Crystal Structure Of The T109s Mutant Of E. Coli
Dihydroorotase Complexed With An Inhibitor
5-fluoroorotate
pdb|2Z27|A Chain A, Thr109ser Dihydroorotase From E. Coli
pdb|2Z27|B Chain B, Thr109ser Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z29|A Chain A, Thr109ala Dihydroorotase From E. Coli
pdb|2Z29|B Chain B, Thr109ala Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z26|A Chain A, Thr110ala Dihydroorotase From E. Coli
pdb|2Z26|B Chain B, Thr110ala Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|1XGE|A Chain A, Dihydroorotase From Escherichia Coli: Loop Movement And
Cooperativity Between Subunits
pdb|1XGE|B Chain B, Dihydroorotase From Escherichia Coli: Loop Movement And
Cooperativity Between Subunits
pdb|2EG6|A Chain A, The Crystal Structure Of The Ligand-free Dihydroorotase
From E. Coli
pdb|2EG6|B Chain B, The Crystal Structure Of The Ligand-free Dihydroorotase
From E. Coli
pdb|2EG7|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With Hddp
pdb|2EG7|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With Hddp
pdb|2EG8|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With 5- Fluoroorotic Acid
pdb|2EG8|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With 5- Fluoroorotic Acid
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|3MJM|A Chain A, His257ala Mutant Of Dihydroorotase From E. Coli
pdb|3MJM|B Chain B, His257ala Mutant Of Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z28|A Chain A, Thr109val Dihydroorotase From E. Coli
pdb|2Z28|B Chain B, Thr109val Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z25|A Chain A, Thr110val Dihydroorotase From E. Coli
pdb|2Z25|B Chain B, Thr110val Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|2Z2B|A Chain A, Deletion 107-116 Mutant Of Dihydroorotase From E. Coli
Length = 337
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 70 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 125
+L+ +VP +++ G+A+V+ + + +++ V + L+AV + + TP + +
Sbjct: 24 MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79
>pdb|1A0A|A Chain A, Phosphate System Positive Regulatory Protein Pho4DNA
Complex
pdb|1A0A|B Chain B, Phosphate System Positive Regulatory Protein Pho4DNA
Complex
Length = 63
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 51 DSHSLAERARREKISERMKILQDLVPG------CNKVIGKALVLDEIINYIQSLQ 99
+SH AE+ARR +++ + L L+P + KA ++ YI+ LQ
Sbjct: 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58
>pdb|4GLW|A Chain A, Dna Ligase A In Complex With Inhibitor
pdb|4GLW|B Chain B, Dna Ligase A In Complex With Inhibitor
Length = 305
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 42 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 101
V A+R AT + A + R+ + +K L+ L N A +DEI N+IQ + ++
Sbjct: 205 VVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQE 264
Query: 102 VEFLSMKLEAVNSRMN 117
E L ++ V ++N
Sbjct: 265 RENLPYDIDGVVIKVN 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,225,367
Number of Sequences: 62578
Number of extensions: 139392
Number of successful extensions: 330
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 28
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)